Psyllid ID: psy4411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYER
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccEEEEEccccHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHcccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccEEEEEccccccHHHHHccccccEEEEEccccccHHHHHHHHHHccccccEEEEEcccHcccHHHHHHHHHcccEEEEEcc
Coil and Loop (DISEMBL)
MMMYSNLIDTVAVLSGYADVIVlrhpepgavkeemgrVNGLTITMvgdlkngrtvHSLARLLTLYDVklnyvsppnlgmpESIQEFVASkgkqqevyer
Flexible Loop (DISEMBL)
MMMYSNLIDTVAVLSGYADVIVLRHpepgavkeemgrvNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVaskgkqqevyer
Low Complexity Region (SEG)
MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYER
Disordered region (IsUnstruct)
***YSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP*************************
Disordered Region (DISOPRED)
*MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK*******
Disordered Region (DISEMBL)
MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF*************
Disordered Region (DISPRO)
****SNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P08955	2225	CAD protein OS=Mesocricet	N/A	N/A	0.939	0.041	0.496	1e-26
P27708	2225	CAD protein OS=Homo sapie	yes	N/A	0.939	0.041	0.488	4e-26
Q91437	2242	CAD protein OS=Squalus ac	N/A	N/A	0.939	0.041	0.488	5e-25
P05990	2224	CAD protein OS=Drosophila	yes	N/A	0.898	0.040	0.495	8e-25
P20054	2225	Protein PYR1-3 OS=Dictyos	yes	N/A	0.929	0.041	0.411	5e-19
P07259	2214	Protein URA2 OS=Saccharom	yes	N/A	0.858	0.038	0.393	5e-16
P77918	308	Aspartate carbamoyltransf	yes	N/A	0.878	0.282	0.394	8e-16
Q09794	2244	Protein ura1 OS=Schizosac	yes	N/A	0.868	0.038	0.381	8e-16
A5EVP6	348	Aspartate carbamoyltransf	yes	N/A	0.939	0.267	0.346	8e-16
Q58976	306	Aspartate carbamoyltransf	yes	N/A	0.929	0.300	0.385	1e-15

>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 78/125 (62%), Gaps = 32/125 (25%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L D+V  +S YADV+VLRHP+PGAV                                +E
Sbjct: 2006 SLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 2065

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+ +FVAS+G +
Sbjct: 2066 ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPSVWDFVASRGTK 2125

Query: 94   QEVYE 98
            QE +E
Sbjct: 2126 QEEFE 2130

This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).
Mesocricetus auratus (taxid: 10036)
EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 3

>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 78/125 (62%), Gaps = 32/125 (25%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L D+V  +S YADV+VLRHP+PGAV                                +E
Sbjct: 2006 SLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 2065

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVAS+G +
Sbjct: 2066 ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTK 2125

Query: 94   QEVYE 98
            QE +E
Sbjct: 2126 QEEFE 2130

This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 3

>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 32/125 (25%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L+D+V  +S Y DV+VLRHPEPGAV                                +E
Sbjct: 2023 SLLDSVQTMSCYVDVVVLRHPEPGAVELAAKHSRKPIINAGDGVGEHPTQALLDIFTIRE 2082

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNG+TITMVGDLK+GRTVHSLA LLTLY V L YV+P NL MP +I  F+AS+G +
Sbjct: 2083 ELGTVNGMTITMVGDLKHGRTVHSLAYLLTLYRVNLRYVTPRNLRMPPNIIRFLASRGIK 2142

Query: 94   QEVYE 98
            QE ++
Sbjct: 2143 QEEFD 2147

This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).

Squalus acanthias (taxid: 7797)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 3

>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 74/121 (61%), Gaps = 32/121 (26%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L D++ V+S YADV+VLRHP PGAV                                +E
Sbjct: 2001 SLEDSIKVVSSYADVVVLRHPSPGAVARAATFSRKPLINAGDGVGEHPTQALLDIFTIRE 2060

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E G VNGLTITMVGDLKNGRTVHSLARLLTLY+V L YV+P +L MP+ + +FV  +G +
Sbjct: 2061 EFGTVNGLTITMVGDLKNGRTVHSLARLLTLYNVNLQYVAPNSLQMPDEVVQFVHQRGVK 2120

Query: 94   Q 94
            Q
Sbjct: 2121 Q 2121

This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 3

>sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1-3 PE=1 SV=3

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 32/124 (25%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            ++ DT+  L  Y D + +RHP  G+V                                +E
Sbjct: 2005 SIADTIQTLESYCDAVCMRHPAVGSVESAIQVAKKPIINAGDGVGEHPTQALLDVFTIRE 2064

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNGLTIT+VGDLK+GRTVHSL RLL  Y VK+NYVSP +L MP  I + +  KG +
Sbjct: 2065 ELGTVNGLTITVVGDLKHGRTVHSLVRLLANYQVKINYVSPSSLSMPTEIIKELNEKGIE 2124

Query: 94   QEVY 97
            Q+ Y
Sbjct: 2125 QKEY 2128

This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 3

>sp|P07259|PYR1_YEAST Protein URA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=URA2 PE=1 SV=5

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 32/117 (27%)

Query: 7    LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
            L DT+  L+ Y+D IV+RH E  +V                                +EE
Sbjct: 1994 LQDTIRTLACYSDAIVMRHSEEMSVHIAAKYSPVPIINGGNGSREHPTQAFLDLFTIREE 2053

Query: 35   MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
            +G VNG+T+T +GDLK+GRTVHSL RLL  Y V++N VSPP L +PE ++E +   G
Sbjct: 2054 IGTVNGITVTFMGDLKHGRTVHSLCRLLMHYQVRINLVSPPELRLPEGLREELRKAG 2110

This protein is a "fusion" protein encoding three enzymatic activities of the pyrimidine pathway (GATase, CPSase, and ATCase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|P77918|PYRB_PYRAB Aspartate carbamoyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pyrB PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 32/119 (26%)

Query: 5   SNLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VK 32
            +L DT+  +  Y DVIV+RHP+ GA                                +K
Sbjct: 88  ESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIK 147

Query: 33  EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
           +E GR++GL I ++GDLK GRTVHSLA  LT YDV+L  +SP  L MP  I E +  KG
Sbjct: 148 KEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG 206

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q09794|PYR1_SCHPO Protein ura1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ura1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 32/118 (27%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
            +L DT+  L  Y D IVLRHP   +                                ++E
Sbjct: 2019 SLADTIRTLGCYGDAIVLRHPSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIRE 2078

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
            E+G VNGLTIT +GDLK GRTVHSLARLL  + V+L+ VSP  L +P+ +++ + + G
Sbjct: 2079 ELGSVNGLTITFIGDLKYGRTVHSLARLLAFWHVELHLVSPEQLALPDDVKDDIRANG 2136

This protein is a "fusion" protein encoding three enzymatic activities of the pyrimidine pathway (GATase, CPSase, and ATCase).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|A5EVP6|PYRB_DICNV Aspartate carbamoyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=pyrB PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 37/130 (28%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVN-------------------------- 39
           +L DT  V++GYADVIV+RHP+ G+V E   ++N                          
Sbjct: 89  SLSDTARVIAGYADVIVMRHPDQGSVAEFASKINVPVINAGDGIGEHPSQALLDYYTINN 148

Query: 40  ----------GLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVA 88
                     G+TI MVGDLKNGRT+HSLA+LL+L+D +   +++P  L  P  + E + 
Sbjct: 149 EFERLKKNIDGMTIAMVGDLKNGRTIHSLAKLLSLFDNIHFRFIAPETLRAPAELLELLR 208

Query: 89  SKGKQQEVYE 98
           S+G   + ++
Sbjct: 209 SRGHDVQEFD 218

Dichelobacter nodosus (strain VCS1703A) (taxid: 246195)

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q58976|PYRB_METJA Aspartate carbamoyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pyrB PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 35/127 (27%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
           +LIDT+ V+SGYAD+IVLRHP  GA +                                 
Sbjct: 85  SLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMR 144

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
           E+GR++G+ I  VGDLK GRTVHSL   L+L++ V++ +VSP  L +P+ I E +  K K
Sbjct: 145 EIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDL--KAK 202

Query: 93  QQEVYER 99
             + YE+
Sbjct: 203 NIKFYEK 209

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
357626884	2861	putative carbamoyl-phosphate synthase la	0.939	0.032	0.56	9e-29
193697813	2235	PREDICTED: CAD protein-like [Acyrthosiph	0.919	0.040	0.544	2e-27
242001442	1136	carbamoyl-phosphate synthase large chain	0.909	0.079	0.516	7e-27
242002962	2251	carbamoyl-phosphate synthase, putative [	0.909	0.039	0.524	1e-26
91090153	2198	PREDICTED: similar to carbamoyl-phosphat	0.888	0.040	0.55	2e-26
383857632	2254	PREDICTED: CAD protein-like [Megachile r	0.919	0.040	0.512	4e-26
157123313	852	carbamoyl-phosphate synthase large chain	0.898	0.104	0.537	4e-26
170041953	2213	carbamoyl-phosphate synthase large chain	0.939	0.042	0.504	8e-26
26369217	234	unnamed protein product [Mus musculus]	0.939	0.397	0.504	1e-25
28175177	793	Cad-pending protein, partial [Mus muscul	0.939	0.117	0.504	2e-25

>gi|357626884|gb|EHJ76789.1| putative carbamoyl-phosphate synthase large chain [Danaus plexippus]

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 81/125 (64%), Gaps = 32/125 (25%)

Query: 7    LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
            L D+V V++ YADV+VLRHPEPGAV                                +EE
Sbjct: 2640 LEDSVTVMASYADVVVLRHPEPGAVTRASRHCRKPIINAGDGVGEHPTQALLDVFTIREE 2699

Query: 35   MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
            +G VNGLTITMVGDLKNGRTVHSLARLLTLY V+L YVSPP LGMP+ I ++VA KG  Q
Sbjct: 2700 IGTVNGLTITMVGDLKNGRTVHSLARLLTLYQVQLQYVSPPGLGMPKHIMDYVAYKGIPQ 2759

Query: 95   EVYER 99
            +VYER
Sbjct: 2760 KVYER 2764

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193697813|ref|XP_001943635.1| PREDICTED: CAD protein-like [Acyrthosiphon pisum]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 78/123 (63%), Gaps = 32/123 (26%)

Query: 7    LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
            L DTV V+SGY DV+V+RHPEPGAV                                +EE
Sbjct: 2017 LQDTVEVMSGYVDVVVMRHPEPGAVGNAARHCRKPILNAGDGTGEHPTQALLDIFTIREE 2076

Query: 35   MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
            +G VNGLTIT+VGDLKNGRTVHSLARLLTLY V L YVSP NLGMP S+ +FVA++G  Q
Sbjct: 2077 IGTVNGLTITLVGDLKNGRTVHSLARLLTLYKVNLQYVSPQNLGMPASVSQFVATRGVPQ 2136

Query: 95   EVY 97
            E +
Sbjct: 2137 ENF 2139

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242001442|ref|XP_002435364.1| carbamoyl-phosphate synthase large chain, putative [Ixodes scapularis] gi|215498694|gb|EEC08188.1| carbamoyl-phosphate synthase large chain, putative [Ixodes scapularis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 82/122 (67%), Gaps = 32/122 (26%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L D++AV++GY+DV+VLRHP+PGAV                                +E
Sbjct: 917  SLEDSIAVMAGYSDVVVLRHPQPGAVMRAAKHCRKPVINAGDGVGEHPTQALLDIYTIRE 976

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNGLT+T+VGDLK+GRTVHSLARLLT YDV+L YV+P NLGMP+S++E VAS+G  
Sbjct: 977  EIGTVNGLTVTLVGDLKHGRTVHSLARLLTHYDVQLRYVAPKNLGMPDSVKELVASRGIP 1036

Query: 94   QE 95
            QE
Sbjct: 1037 QE 1038

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242002962|ref|XP_002422558.1| carbamoyl-phosphate synthase, putative [Pediculus humanus corporis] gi|212505348|gb|EEB09820.1| carbamoyl-phosphate synthase, putative [Pediculus humanus corporis]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 78/122 (63%), Gaps = 32/122 (26%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            +L D++ V++ Y+DV+VLRHPEPGAV                                +E
Sbjct: 2032 SLEDSITVMASYSDVVVLRHPEPGAVGKAAATCRKPLINAGDGVGEHPTQALLDVFTIRE 2091

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNGLTITMVGDLKNGRTVHSLARLLTLY+V+L YVSPP LGMPE +  +V  KG +
Sbjct: 2092 EIGTVNGLTITMVGDLKNGRTVHSLARLLTLYNVQLKYVSPPGLGMPEEVMNYVGEKGIR 2151

Query: 94   QE 95
            QE
Sbjct: 2152 QE 2153

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090153|ref|XP_972190.1| PREDICTED: similar to carbamoyl-phosphate synthase large chain [Tribolium castaneum] gi|270013749|gb|EFA10197.1| hypothetical protein TcasGA2_TC012392 [Tribolium castaneum]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 77/120 (64%), Gaps = 32/120 (26%)

Query: 7    LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
            L D+VAV++GYADV+VLRHP PG+V                                +EE
Sbjct: 1980 LEDSVAVMAGYADVVVLRHPTPGSVMRASHHCRKPLINAGDGVGEHPSQALLDIFTIREE 2039

Query: 35   MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
            +G VNGLTIT+VGDLKNGRTVHSLARLLTLY+V+L YVSPP+L MP  I  FVASKG  Q
Sbjct: 2040 IGTVNGLTITLVGDLKNGRTVHSLARLLTLYNVQLRYVSPPSLKMPSHITSFVASKGIPQ 2099

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857632|ref|XP_003704308.1| PREDICTED: CAD protein-like [Megachile rotundata]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 81/123 (65%), Gaps = 32/123 (26%)

Query: 7    LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
            L D+VAV++GYADV+VLRHPEPGAV                                ++E
Sbjct: 2036 LEDSVAVMAGYADVVVLRHPEPGAVSKAAQHCRKPLLNAGDGVGEHPTQALLDIFTIRDE 2095

Query: 35   MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
            +G VNGLTITMVGDLK+GRTVHSLARLLTLY+V+L YV PP+LGMP+ + ++V+ +G  Q
Sbjct: 2096 IGTVNGLTITMVGDLKHGRTVHSLARLLTLYNVELQYVCPPSLGMPDHVVKYVSERGIPQ 2155

Query: 95   EVY 97
            E +
Sbjct: 2156 EKF 2158

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123313|ref|XP_001660111.1| carbamoyl-phosphate synthase large chain [Aedes aegypti] gi|108874423|gb|EAT38648.1| AAEL009475-PA, partial [Aedes aegypti]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 76/121 (62%), Gaps = 32/121 (26%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
            L D++ V+SGYADV+VLRHPEPGAV                                +E
Sbjct: 633 TLEDSIQVMSGYADVVVLRHPEPGAVARAAHHCRKPLINAGDGVGEHPTQALLDIFTIRE 692

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           E+G VNGLTI MVGDLK+GRTVHSLARLLTLY+V L YV P NLGMP+ + +FV SKG Q
Sbjct: 693 EIGTVNGLTIAMVGDLKHGRTVHSLARLLTLYNVHLYYVCPDNLGMPKDVIQFVKSKGIQ 752

Query: 94  Q 94
           Q
Sbjct: 753 Q 753

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041953|ref|XP_001848709.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus] gi|167865521|gb|EDS28904.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 80/125 (64%), Gaps = 32/125 (25%)

Query: 6    NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
             L D++ V++GY+DV+VLRHPEPGAV                                +E
Sbjct: 1994 TLEDSILVMAGYSDVVVLRHPEPGAVSKAAHHCRKPLINAGDGIGEHPTQALLDIFTIRE 2053

Query: 34   EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
            E+G VNGLTITMVGDLK+GRTVHSLARLLTLY+V + YVSP +LGMPE I + V +KG  
Sbjct: 2054 EIGTVNGLTITMVGDLKHGRTVHSLARLLTLYNVNVRYVSPKSLGMPEKITKLVEAKGIS 2113

Query: 94   QEVYE 98
            Q++Y+
Sbjct: 2114 QKIYD 2118

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|26369217|dbj|BAB26952.2| unnamed protein product [Mus musculus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 32/125 (25%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
           +L D+V  +S YADVIVLRHP+PGAV                                +E
Sbjct: 15  SLADSVQTMSCYADVIVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 74

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+++FVAS+G +
Sbjct: 75  ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPSVRDFVASRGTK 134

Query: 94  QEVYE 98
           QE +E
Sbjct: 135 QEEFE 139

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|28175177|gb|AAH43325.1| Cad-pending protein, partial [Mus musculus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 32/125 (25%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
           +L D+V  +S YADVIVLRHP+PGAV                                +E
Sbjct: 574 SLADSVQTMSCYADVIVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 633

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+++FVAS+G +
Sbjct: 634 ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPSVRDFVASRGTK 693

Query: 94  QEVYE 98
           QE +E
Sbjct: 694 QEEFE 698

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|H7C2E4	293	CAD "CAD protein" [Homo sapien	0.646	0.218	0.656	1.5e-26
RGD|1588606	2225	Cad "carbamoyl-phosphate synth	0.686	0.030	0.661	1.2e-24
UNIPROTKB|P08955	2225	CAD "CAD protein" [Mesocricetu	0.686	0.030	0.661	1.5e-24
UNIPROTKB|F8VPD4	2162	CAD "CAD protein" [Homo sapien	0.686	0.031	0.647	3e-24
UNIPROTKB|P27708	2225	CAD "CAD protein" [Homo sapien	0.686	0.030	0.647	3.2e-24
UNIPROTKB|F1MVC0	2225	CAD "Uncharacterized protein"	0.686	0.030	0.647	4e-24
UNIPROTKB|J9P266	2162	CAD "Uncharacterized protein"	0.686	0.031	0.632	4.8e-24
UNIPROTKB|E2RAV2	2228	CAD "Uncharacterized protein"	0.686	0.030	0.632	5.2e-24
FB|FBgn0003189	2224	r "rudimentary" [Drosophila me	0.646	0.028	0.671	1.7e-23
ZFIN|ZDB-GENE-021030-4	2230	cad "carbamoyl-phosphate synth	0.676	0.030	0.671	1.1e-17

UNIPROTKB|H7C2E4 CAD "CAD protein" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVAS+
Sbjct:    99 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASR 158

Query:    91 GKQQ 94
             G +Q
Sbjct:   159 GTKQ 162

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

RGD|1588606 Cad "carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 45/68 (66%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+ +FVAS+
Sbjct:  2063 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPSSVWDFVASR 2122

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2123 GTKQEEFE 2130

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IDA

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=IDA

GO:0004151 "dihydroorotase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IDA

GO:0006228 "UTP biosynthetic process" evidence=IDA

GO:0006541 "glutamine metabolic process" evidence=IEP

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEP

GO:0007595 "lactation" evidence=IEP

GO:0009790 "embryo development" evidence=IEP

GO:0014075 "response to amine stimulus" evidence=IEP

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0016597 "amino acid binding" evidence=IEA

GO:0017144 "drug metabolic process" evidence=IMP

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0031000 "response to caffeine" evidence=IEP

GO:0031100 "organ regeneration" evidence=IEP

GO:0033574 "response to testosterone stimulus" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0042995 "cell projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEP

UNIPROTKB|P08955 CAD "CAD protein" [Mesocricetus auratus (taxid:10036)]

 Score = 235 (87.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 45/68 (66%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+ +FVAS+
Sbjct:  2063 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPSVWDFVASR 2122

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2123 GTKQEEFE 2130

GO:0002134 "UTP binding" evidence=IDA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IDA

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=IDA

GO:0004151 "dihydroorotase activity" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IC;IDA

GO:0006541 "glutamine metabolic process" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0070335 "aspartate binding" evidence=IDA

UNIPROTKB|F8VPD4 CAD "CAD protein" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVAS+
Sbjct:  2000 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASR 2059

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2060 GTKQEEFE 2067

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

UNIPROTKB|P27708 CAD "CAD protein" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVAS+
Sbjct:  2063 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASR 2122

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2123 GTKQEEFE 2130

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0014075 "response to amine stimulus" evidence=IEA

GO:0031000 "response to caffeine" evidence=IEA

GO:0031100 "organ regeneration" evidence=IEA

GO:0033574 "response to testosterone stimulus" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=ISS;TAS

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS;TAS

GO:0004151 "dihydroorotase activity" evidence=ISS;TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046134 "pyrimidine nucleoside biosynthetic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004672 "protein kinase activity" evidence=ISS

GO:0006541 "glutamine metabolic process" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0018107 "peptidyl-threonine phosphorylation" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=ISS

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=ISS

GO:0070335 "aspartate binding" evidence=ISS

GO:0017144 "drug metabolic process" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0043195 "terminal bouton" evidence=ISS

GO:0042995 "cell projection" evidence=ISS

UNIPROTKB|F1MVC0 CAD "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 231 (86.4 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP  ++ FVAS+
Sbjct:  2063 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPDVRAFVASR 2122

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2123 GTKQEEFE 2130

GO:0019899 "enzyme binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

UNIPROTKB|J9P266 CAD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVA++
Sbjct:  2000 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPSNVRAFVAAR 2059

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2060 GTKQEEFE 2067

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

UNIPROTKB|E2RAV2 CAD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVA++
Sbjct:  2066 IREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPSNVRAFVAAR 2125

Query:    91 GKQQEVYE 98
             G +QE +E
Sbjct:  2126 GTKQEEFE 2133

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

FB|FBgn0003189 r "rudimentary" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE G VNGLTITMVGDLKNGRTVHSLARLLTLY+V L YV+P +L MP+ + +FV  +
Sbjct:  2058 IREEFGTVNGLTITMVGDLKNGRTVHSLARLLTLYNVNLQYVAPNSLQMPDEVVQFVHQR 2117

Query:    91 GKQQ 94
             G +Q
Sbjct:  2118 GVKQ 2121

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=NAS;IMP

GO:0004070 "aspartate carbamoyltransferase activity" evidence=ISS;IDA;IMP

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=IDA;IMP

GO:0004151 "dihydroorotase activity" evidence=ISS;IDA;IMP

GO:0006541 "glutamine metabolic process" evidence=IC;IMP

GO:0070406 "glutamine binding" evidence=IC

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0004087 "carbamoyl-phosphate synthase (ammonia) activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

ZFIN|ZDB-GENE-021030-4 cad "carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 45/67 (67%), Positives = 55/67 (82%)

Query:    31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK 90
             ++EE+G VNG+TITMVGDLK+GRTVHSLARLLT Y + L YV+P NL MP  I +FVASK
Sbjct:  2069 IREELGTVNGMTITMVGDLKHGRTVHSLARLLTQYRITLRYVAPKNLSMPAEIIDFVASK 2128

Query:    91 GKQQEVY 97
             G +QE +
Sbjct:  2129 GIKQEEF 2135

GO:0016743 "carboxyl- or carbamoyltransferase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.3	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
TIGR00670	301	TIGR00670, asp_carb_tr, aspartate carbamoyltransfe	8e-27
PLN02527	306	PLN02527, PLN02527, aspartate carbamoyltransferase	8e-26
COG0540	316	COG0540, PyrB, Aspartate carbamoyltransferase, cat	1e-25
PRK08192	338	PRK08192, PRK08192, aspartate carbamoyltransferase	2e-23
PRK00856	305	PRK00856, pyrB, aspartate carbamoyltransferase cat	7e-22
PRK11891	429	PRK11891, PRK11891, aspartate carbamoyltransferase	8e-20
pfam00185	156	pfam00185, OTCace, Aspartate/ornithine carbamoyltr	9e-10
PRK13376	525	PRK13376, pyrB, bifunctional aspartate carbamoyltr	4e-06
pfam02729	140	pfam02729, OTCace_N, Aspartate/ornithine carbamoyl	7e-06
PLN02342	348	PLN02342, PLN02342, ornithine carbamoyltransferase	5e-04
COG0078	310	COG0078, ArgF, Ornithine carbamoyltransferase [Ami	0.002

>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase

 Score = 99.4 bits (248), Expect = 8e-27
 Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 32/126 (25%)

Query: 6   NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
            L DT+  LSGY D IV+RHP  GA                                + E
Sbjct: 84  TLADTIKTLSGYVDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYE 143

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           E GR++GL I +VGDLK GRTVHSLA  LT + V++  +SP  L MP+ I E + +KG +
Sbjct: 144 EFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIK 203

Query: 94  QEVYER 99
               E 
Sbjct: 204 VRETES 209

Aspartate transcarbamylase (ATCase) is an alternate name.PyrB encodes the catalytic chain of aspartate carbamoyltransferase, an enzyme of pyrimidine biosynthesis, which organizes into trimers. In some species, including E. coli and the Archaea but excluding Bacillus subtilis, a regulatory subunit PyrI is also present in an allosterically regulated hexameric holoenzyme. Several molecular weight classes of ATCase are described in MEDLINE:96303527 and often vary within taxa. PyrB and PyrI are fused in Thermotoga maritima.Ornithine carbamoyltransferases are in the same superfamily and form an outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 301

>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase

 Score = 96.7 bits (241), Expect = 8e-26
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 33/125 (26%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAVKE--------------------------------E 34
           L DT+  + GY+D+IVLRH E GA +                                 E
Sbjct: 86  LEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQRE 145

Query: 35  MGRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           +GR++G+ + +VGDL NGRTV SLA LL  Y DVK+ +V+P  + M + I++++ SKG +
Sbjct: 146 IGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVE 205

Query: 94  QEVYE 98
            E   
Sbjct: 206 WEESS 210

Length = 306

>gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 34/120 (28%)

Query: 6   NLIDTVAVLSGY-ADVIVLRHPEPGA---------------------------------V 31
            L DT+  LS Y  D IV+RHPE GA                                 +
Sbjct: 90  TLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTI 149

Query: 32  KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
           +EE GR++GL I +VGDLK+ R  HS  + L  +  ++  VSP  L  PE I E +  KG
Sbjct: 150 REEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKG 209

Length = 316

>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional

 Score = 90.9 bits (226), Expect = 2e-23
 Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 37/129 (28%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAVKE--EMGRV-------------------------- 38
           L DT  VLS Y+DVI +RHP+ G+VKE  E  RV                          
Sbjct: 90  LYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKE 149

Query: 39  --------NGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVAS 89
                   +G+ I MVGDLK GRTVHSL+RLL +Y +V    VSP  L MP+ +   + +
Sbjct: 150 LAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIEN 209

Query: 90  KGKQQEVYE 98
            G +  + +
Sbjct: 210 AGHKITITD 218

Length = 338

>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit; Provisional

 Score = 86.3 bits (215), Expect = 7e-22
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 34/114 (29%)

Query: 6   NLIDTVAVLSGY-ADVIVLRHPEPGAVK-------------------------------- 32
            L DT+  LS   AD IV+RHP+ GA +                                
Sbjct: 89  TLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIR 148

Query: 33  EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
           EE GR+ GL + +VGD+K+ R   S  + LT    ++  ++PP L +PE + E+
Sbjct: 149 EEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTL-LPEGMPEY 201

Length = 305

>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional

 Score = 81.8 bits (202), Expect = 8e-20
 Identities = 48/125 (38%), Positives = 58/125 (46%), Gaps = 37/125 (29%)

Query: 9   DTVAVLSGYADVIVLRHPEPGAVKE--------------------------------EMG 36
           DT  V+SGY D +V+RHPE G+V E                                E  
Sbjct: 174 DTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFS 233

Query: 37  R----VNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
           R    V+G  I +VGDLK GRTVHSL +LL LY  +K   VSPP L MP  I E ++  G
Sbjct: 234 RLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG 293

Query: 92  KQQEV 96
              E 
Sbjct: 294 HVIEQ 298

Length = 429

>gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

 Score = 51.8 bits (125), Expect = 9e-10
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
          +GL + +VGD K+ R  HSL   L  + +++  V+P  L
Sbjct: 1  DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGL 39

Length = 156

>gnl|CDD|237369 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 43  ITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKG 91
           I +VGDL +GRTVHS    L ++ +VK++ ++P  L MPE   E +   G
Sbjct: 177 IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNG 226

Length = 525

>gnl|CDD|217204 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 9   DTVAVLSGYADVIVLRHPEPGAVKEEMGR------VNGLT 42
           DT  VLS Y D IV+RHP  GA+ EE+ +      +N   
Sbjct: 84  DTARVLSRYVDAIVIRHPSHGAL-EELAKYSSVPVINAGD 122

Length = 140

>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 33/98 (33%)

Query: 9   DTVAVLSGYADVIVLR--------------------------HP-----EPGAVKEEMGR 37
           D   VLS Y D+I+ R                          HP     +   + E +GR
Sbjct: 132 DIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGR 191

Query: 38  VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75
           + G  +  VGD  N   VHS   L  +         P 
Sbjct: 192 LEGTKVVYVGDGNN--IVHSWLLLAAVLPFHFVCACPK 227

Length = 348

>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism]

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 33/116 (28%)

Query: 9   DTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGR 37
           DT  VLS   D I++R      +                               KE  G 
Sbjct: 91  DTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGS 150

Query: 38  VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
           + GL +  VGD  N    +SL        + +   +P        + E      K+
Sbjct: 151 LKGLKLAYVGDGNN--VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKE 204

Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	99.97
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	99.96
PLN02527	306	aspartate carbamoyltransferase	99.96
PRK14805	302	ornithine carbamoyltransferase; Provisional	99.95
PLN02342	348	ornithine carbamoyltransferase	99.95
PRK08192	338	aspartate carbamoyltransferase; Provisional	99.95
PRK04284	332	ornithine carbamoyltransferase; Provisional	99.94
KOG1504|consensus	346		99.94
PRK11891	429	aspartate carbamoyltransferase; Provisional	99.94
PRK02102	331	ornithine carbamoyltransferase; Validated	99.94
PRK01713	334	ornithine carbamoyltransferase; Provisional	99.94
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	99.94
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	99.94
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	99.93
PRK00779	304	ornithine carbamoyltransferase; Provisional	99.93
PRK02255	338	putrescine carbamoyltransferase; Provisional	99.93
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	99.93
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	99.92
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	99.92
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	99.92
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	99.91
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	99.9
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	99.9
PRK14804	311	ornithine carbamoyltransferase; Provisional	99.86
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	99.46
PF02729	142	OTCace_N: Aspartate/ornithine carbamoyltransferase	98.99
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.53
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.46
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.84
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.82
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.08
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	93.04
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	92.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	92.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.76
PRK10717	330	cysteine synthase A; Provisional	92.46
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	92.44
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	92.44
PRK12831	464	putative oxidoreductase; Provisional	92.42
PRK11761	296	cysM cysteine synthase B; Provisional	92.27
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	92.03
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.93
PLN00011	323	cysteine synthase	91.88
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.62
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	91.57
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	91.55
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	91.46
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	91.4
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.37
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	91.24
PRK10637	457	cysG siroheme synthase; Provisional	91.23
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	91.22
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.09
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.84
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.83
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.8
PLN02565	322	cysteine synthase	90.74
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.72
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.57
PRK08246	310	threonine dehydratase; Provisional	90.38
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	90.32
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.3
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.25
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	90.19
TIGR01136	299	cysKM cysteine synthases. This model discriminates	90.14
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	89.96
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.52
PRK07476	322	eutB threonine dehydratase; Provisional	89.3
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.22
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.18
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.06
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.06
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	88.96
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.95
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	88.79
PRK08198	404	threonine dehydratase; Provisional	88.78
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	88.77
PRK06815	317	hypothetical protein; Provisional	88.68
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.51
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.51
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.48
PRK06352	351	threonine synthase; Validated	88.43
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.42
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	88.41
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	88.31
PRK07048	321	serine/threonine dehydratase; Validated	88.29
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	88.19
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.19
PLN02970	328	serine racemase	88.15
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	88.04
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	87.98
PRK07409	353	threonine synthase; Validated	87.97
PRK06381	319	threonine synthase; Validated	87.84
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	87.82
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	87.67
PRK08936	261	glucose-1-dehydrogenase; Provisional	87.62
PRK08329	347	threonine synthase; Validated	87.44
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.43
PRK06608	338	threonine dehydratase; Provisional	87.31
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.16
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.16
PRK07334	403	threonine dehydratase; Provisional	87.16
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.13
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.08
CHL00073	457	chlN photochlorophyllide reductase subunit N	87.04
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	87.03
PRK13243	333	glyoxylate reductase; Reviewed	86.98
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.87
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	86.86
PRK08638	333	threonine dehydratase; Validated	86.74
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.72
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	86.54
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	86.53
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.47
PRK06721	352	threonine synthase; Reviewed	86.3
PRK07591	421	threonine synthase; Validated	86.27
PLN02356	423	phosphateglycerate kinase	86.22
PRK05638	442	threonine synthase; Validated	86.17
PRK06110	322	hypothetical protein; Provisional	85.91
PRK06450	338	threonine synthase; Validated	85.88
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	85.82
PRK08197	394	threonine synthase; Validated	85.82
PLN03013	429	cysteine synthase	85.78
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.65
PRK05479	330	ketol-acid reductoisomerase; Provisional	85.52
PRK06382	406	threonine dehydratase; Provisional	85.46
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	85.38
PRK12779	944	putative bifunctional glutamate synthase subunit b	85.32
PRK14030	445	glutamate dehydrogenase; Provisional	85.3
COG2044	120	Predicted peroxiredoxins [General function predict	85.21
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	85.09
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.89
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	84.88
PRK08526	403	threonine dehydratase; Provisional	84.86
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	84.82
PRK02991	441	D-serine dehydratase; Provisional	84.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	84.64
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	84.64
PRK08813	349	threonine dehydratase; Provisional	84.36
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.36
PRK12480	330	D-lactate dehydrogenase; Provisional	84.27
PRK06436	303	glycerate dehydrogenase; Provisional	84.26
TIGR01279	407	DPOR_bchN light-independent protochlorophyllide re	84.25
PLN02629	387	powdery mildew resistance 5	84.12
PRK06260	397	threonine synthase; Validated	83.99
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	83.7
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	83.66
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	83.42
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	83.38
PRK02842	427	light-independent protochlorophyllide reductase su	83.09
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	82.89
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	82.83
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.81
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.74
PLN02928	347	oxidoreductase family protein	82.72
PRK06487	317	glycerate dehydrogenase; Provisional	82.67
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	82.53
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	82.46
cd01979	396	Pchlide_reductase_N Pchlide_reductase_N: N protein	82.34
PRK09224	504	threonine dehydratase; Reviewed	82.34
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	82.17
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	82.16
PRK08628	258	short chain dehydrogenase; Provisional	82.12
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	81.6
PLN02569	484	threonine synthase	81.54
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	81.1
PRK06932	314	glycerate dehydrogenase; Provisional	81.01
PRK08589	272	short chain dehydrogenase; Validated	80.95
PLN02477	410	glutamate dehydrogenase	80.9
PRK12814	652	putative NADPH-dependent glutamate synthase small	80.85
PLN03139	386	formate dehydrogenase; Provisional	80.82
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.73
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	80.73
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	80.69
PRK06701	290	short chain dehydrogenase; Provisional	80.52
PRK03910	331	D-cysteine desulfhydrase; Validated	80.52
PRK09414	445	glutamate dehydrogenase; Provisional	80.38
PF02729	142	OTCace_N: Aspartate/ornithine carbamoyltransferase	80.07
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.01

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=4.1e-31  Score=199.83  Aligned_cols=96  Identities=24%  Similarity=0.313  Sum_probs=89.9

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      ++++||++|||||||+|+|+|++|++.|+.+                               +|++|.++|+|++|+||+
T Consensus        83 lgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg  162 (310)
T COG0078          83 LGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG  162 (310)
T ss_pred             cCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc
Confidence            4789999999999999999999999999988                               799999999999999999


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ||  |+|||+.++++|||++++++|++|+|+++++++|+    ++|+++++.+
T Consensus       163 NN--v~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~  213 (310)
T COG0078         163 NN--VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE  213 (310)
T ss_pred             ch--HHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence            76  99999999999999999999999999999998865    5688998875

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=99.96  E-value=5.4e-29  Score=188.76  Aligned_cols=98  Identities=49%  Similarity=0.743  Sum_probs=92.0

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd   48 (99)
                      +++|||++|||+|||+|+|+||+||+.|+.+                                +|+||+++|+||+|+||
T Consensus        79 ~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD  158 (301)
T TIGR00670        79 VAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGD  158 (301)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence            4789999999999999999999999999877                                68899999999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.++||+|||+.++++||++|++++|++|++|+++++++++.|+++++++
T Consensus       159 ~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~  208 (301)
T TIGR00670       159 LKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE  208 (301)
T ss_pred             CCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence            98778999999999999999999999999999999999999999988764

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PLN02527 aspartate carbamoyltransferase

Probab=99.96  E-value=2.3e-28  Score=185.59  Aligned_cols=98  Identities=45%  Similarity=0.748  Sum_probs=91.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd   48 (99)
                      +++|||++|||+|||+|+|+||+||+.++.+                                +|++|+++|+||+|+||
T Consensus        80 ~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD  159 (306)
T PLN02527         80 AAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGD  159 (306)
T ss_pred             cCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECC
Confidence            3689999999999999999999999999877                                68899999999999999


Q ss_pred             CCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.|+||+|||+.++++| |++|++++|++|++++++.++++++|+++++++
T Consensus       160 ~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  210 (306)
T PLN02527        160 LANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS  210 (306)
T ss_pred             CCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence            97789999999999998 999999999999999999999999999998765

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=99.95  E-value=2.9e-27  Score=179.40  Aligned_cols=96  Identities=25%  Similarity=0.292  Sum_probs=87.6

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++||+++||+|+|+|++||+.++.+                               +|++|+++|+||+|+||+
T Consensus        77 ~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~  156 (302)
T PRK14805         77 LGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDG  156 (302)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCC
Confidence            4789999999999999999999999999977                               788999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +|  |+|||+.++++||++|++++|++|+|+++++++|    +++|+++++++
T Consensus       157 ~~--v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~  207 (302)
T PRK14805        157 NN--VTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS  207 (302)
T ss_pred             Cc--cHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence            75  9999999999999999999999999999988664    45788887764

>PLN02342 ornithine carbamoyltransferase

Probab=99.95  E-value=5.5e-27  Score=180.82  Aligned_cols=96  Identities=26%  Similarity=0.315  Sum_probs=88.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++||++|||+|+|+||+||+.++.+                               +|++|+++|+||+|+||+
T Consensus       124 ~~kGESl~DTarvLs~y~D~IviR~~~~~~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~  203 (348)
T PLN02342        124 LGKREETRDIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDG  203 (348)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEeCCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCC
Confidence            4689999999999999999999999999877                               688999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCC-eEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK-QQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~-~~~~~~   98 (99)
                      +|  |+|||+.++++||++|++++|++|++++++++++++.|. ++++++
T Consensus       204 ~n--va~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~  251 (348)
T PLN02342        204 NN--IVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN  251 (348)
T ss_pred             ch--hHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence            76  999999999999999999999999999999999988774 777664

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=99.95  E-value=6.8e-27  Score=179.66  Aligned_cols=98  Identities=43%  Similarity=0.720  Sum_probs=89.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHh----cCCCCcEEE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEM----GRVNGLTIT   44 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~----g~l~g~~i~   44 (99)
                      +++|||++|||+|||+|+|+||+||+.++.+                                +|++    |+++|+||+
T Consensus        84 ~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia  163 (338)
T PRK08192         84 LSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIA  163 (338)
T ss_pred             CCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEE
Confidence            4789999999999999999999999999876                                6776    379999999


Q ss_pred             EECCCCCchhHHHHHHHHh-hCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          45 MVGDLKNGRTVHSLARLLT-LYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        45 ~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |+||++|+|++|||+.+++ .+|++|++++|++|+++++++++++++|+++++++
T Consensus       164 ~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  218 (338)
T PRK08192        164 MVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD  218 (338)
T ss_pred             EECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence            9999987899999998766 56999999999999999999999999999998865

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=99.94  E-value=1e-26  Score=178.26  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHH-hcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEE-MGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~-~g~l~g~~i~~vGd   48 (99)
                      +++|||++||++|||+|+|+||+||+.++.+                               +|+ +|.++|+||+||||
T Consensus        84 ~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD  163 (332)
T PRK04284         84 MGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGD  163 (332)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecC
Confidence            4689999999999999999999999999977                               688 69999999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +.| ||+|||+.++++||++|++++|++|+|++++++.++    +.|+++++++
T Consensus       164 ~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  216 (332)
T PRK04284        164 GRN-NVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD  216 (332)
T ss_pred             CCc-chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            855 799999999999999999999999999999986654    6788888764

>KOG1504|consensus

Probab=99.94  E-value=8.5e-28  Score=179.44  Aligned_cols=95  Identities=24%  Similarity=0.387  Sum_probs=88.2

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-CCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-RVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-~l~g~~i~~vGd   48 (99)
                      |+.+||++||+||||+|+|+|++|+++|+++                               +|+|| +++|+|++||||
T Consensus       119 lGvnEs~~DtarVlSsm~d~I~ARV~khsDi~tlak~sSvPiINgL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD  198 (346)
T KOG1504|consen  119 LGVNESLYDTARVLSSMVDIIMARVNKHSDILTLAKYSSVPIINGLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGD  198 (346)
T ss_pred             cccchhhHhHHHHHHHHHHHHHHHHhhhhhHHHHhhccCCceecccccccChHHHHHHHHHHHHHHhccccccEEEEEcc
Confidence            5679999999999999999999999999988                               79996 599999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEE
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVY   97 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~   97 (99)
                      +||  |.|||++++++||+++..++|+||+|+.+++.+|    ++||.++|+.
T Consensus       199 ~NN--vlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eNgsk~elt  249 (346)
T KOG1504|consen  199 GNN--VLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEENGSKFELT  249 (346)
T ss_pred             ccH--HHHHHHHHhhhcceEEEecCCCCCCcchHHHHHHHHHHHhcCCEEEEe
Confidence            998  9999999999999999999999999999998665    4789999875

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=99.94  E-value=1.3e-26  Score=182.61  Aligned_cols=98  Identities=48%  Similarity=0.782  Sum_probs=90.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhc----CCCCcEEE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMG----RVNGLTIT   44 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g----~l~g~~i~   44 (99)
                      +++|||++|||+|||+|+|+||+||+.|+.+                                +|+||    .++|+||+
T Consensus       166 ~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa  245 (429)
T PRK11891        166 MAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIA  245 (429)
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEE
Confidence            4689999999999999999999999999877                                68885    39999999


Q ss_pred             EECCCCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          45 MVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        45 ~vGd~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||||+.|+||+||++.+++++ |++|++++|++|+++++++++++++|+++++++
T Consensus       246 ~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~  300 (429)
T PRK11891        246 LVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD  300 (429)
T ss_pred             EECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence            999998779999999998887 999999999999999999999999999998865

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=99.94  E-value=1.9e-26  Score=176.87  Aligned_cols=97  Identities=25%  Similarity=0.287  Sum_probs=88.3

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++||++|||+|+|+||+||+.++.+                               +|++|.++|+||+||||+
T Consensus        85 ~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~  164 (331)
T PRK02102         85 LGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDG  164 (331)
T ss_pred             CCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            4689999999999999999999999999877                               688999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      .| ||+|||+.++++||++|++++|++|+++++++++++    +.|.++++++
T Consensus       165 ~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  216 (331)
T PRK02102        165 RN-NMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE  216 (331)
T ss_pred             cc-cHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence            65 699999999999999999999999999999887654    4788888764

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=99.94  E-value=2e-26  Score=176.76  Aligned_cols=97  Identities=21%  Similarity=0.237  Sum_probs=87.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-CCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-RVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-~l~g~~i~~vGd   48 (99)
                      +++|||++||+++||+|+|+||+||+.++.+                               +|++| .++|+||+|+||
T Consensus        85 ~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD  164 (334)
T PRK01713         85 IGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGD  164 (334)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECC
Confidence            4689999999999999999999999999977                               68888 799999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +.| +|+|||+.++++||++|++++|++|.|++++++.+    +++|+++++++
T Consensus       165 ~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~  217 (334)
T PRK01713        165 ARN-NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD  217 (334)
T ss_pred             Ccc-CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            866 49999999999999999999999999999887554    45788988765

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=99.94  E-value=2.7e-26  Score=176.26  Aligned_cols=97  Identities=23%  Similarity=0.233  Sum_probs=87.3

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vG   47 (99)
                      +++|||++||++|||+|+|+|++||+.|+.+                               +|+||  +++|+||+|+|
T Consensus        84 ~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vG  163 (336)
T PRK03515         84 IGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAG  163 (336)
T ss_pred             CCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeC
Confidence            4689999999999999999999999999977                               68885  59999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      |+.| ||+|||+.++++||+++++++|++|+|++++++.+    +++|+++++++
T Consensus       164 D~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~  217 (336)
T PRK03515        164 DARN-NMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE  217 (336)
T ss_pred             CCcC-cHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence            9855 69999999999999999999999999999888654    45788888765

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=99.94  E-value=7.6e-26  Score=173.69  Aligned_cols=97  Identities=23%  Similarity=0.245  Sum_probs=86.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vG   47 (99)
                      +++|||++||++|||+|+|+|++||+.++.+                               +|++|  .++|+||+|||
T Consensus        84 ~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vG  163 (334)
T PRK12562         84 IGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAG  163 (334)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEEC
Confidence            4789999999999999999999999999977                               68886  49999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      |+.| ||+|||+.++++||++|++++|++|+|++++++++    ++.|+++++++
T Consensus       164 D~~~-~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  217 (334)
T PRK12562        164 DARN-NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE  217 (334)
T ss_pred             CCCC-CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence            9865 69999999999999999999999999999888654    45688887764

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=99.93  E-value=9.3e-26  Score=171.11  Aligned_cols=96  Identities=23%  Similarity=0.271  Sum_probs=87.6

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +.+|||++||++|||+|+|+|++||+.++.+                               +|++|+++|+||+|+||.
T Consensus        78 ~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~  157 (304)
T TIGR00658        78 LGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDG  157 (304)
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Confidence            4689999999999999999999999999877                               688999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|++++++.+++    ++.|+++++++
T Consensus       158 ~--~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  208 (304)
T TIGR00658       158 N--NVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH  208 (304)
T ss_pred             C--chHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            5  59999999999999999999999999999988776    45788888764

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=99.93  E-value=1.3e-25  Score=170.42  Aligned_cols=96  Identities=28%  Similarity=0.334  Sum_probs=88.0

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +.+|||++||+++||+|+|+|++||+.++.+                               +|++|.++|+||+|+||.
T Consensus        82 ~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~  161 (304)
T PRK00779         82 LGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDG  161 (304)
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCC
Confidence            4689999999999999999999999998877                               688999999999999995


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH-HHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF-VASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~-a~~~g~~~~~~~   98 (99)
                      +  ||+||++.++++||++|++++|++|+++++++++ ++++|+++++++
T Consensus       162 ~--~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~  209 (304)
T PRK00779        162 N--NVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH  209 (304)
T ss_pred             C--ccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence            4  6999999999999999999999999999988877 778899888764

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=99.93  E-value=1.2e-25  Score=172.77  Aligned_cols=96  Identities=23%  Similarity=0.276  Sum_probs=86.5

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc---CCCCcEEEEE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG---RVNGLTITMV   46 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g---~l~g~~i~~v   46 (99)
                      +++|||++||++|||+|+|+|++||+.|+.+                               +|++|   .++|+||+|+
T Consensus        81 ~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~v  160 (338)
T PRK02255         81 LGGHESLEDTARVLSRLVDIIMARVDRHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFV  160 (338)
T ss_pred             CCCCcCHHHHHHHHHHhCcEEEEecCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEE
Confidence            4689999999999999999999999999877                               68885   6999999999


Q ss_pred             CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          47 GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ||++|  |+|||+.++++||++|++++|++|+++++++++++    .+|+++++++
T Consensus       161 GD~~~--v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  214 (338)
T PRK02255        161 GDATQ--VCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD  214 (338)
T ss_pred             CCCch--HHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence            99865  99999999999999999999999999999987765    4688888764

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=99.93  E-value=3.7e-25  Score=177.77  Aligned_cols=98  Identities=31%  Similarity=0.543  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHhhccC--EEEEccCCchh----------------------H--------------------HHHhc
Q psy4411           1 MMMYSNLIDTVAVLSGYAD--VIVLRHPEPGA----------------------V--------------------KEEMG   36 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D--~iv~R~~~~~~----------------------~--------------------~e~~g   36 (99)
                      +++|||++|||+|||+|+|  +|++||+..+.                      +                    +|++|
T Consensus        90 l~kGESl~DTarvLs~y~D~d~IviR~~~~g~~~~~~~~l~~~a~~s~vpVp~VINAgdg~~~HPTQaLaDl~TI~E~~G  169 (525)
T PRK13376         90 FNKQESYTDTFNMLTGYSDYSIFIVRTRLEGVCRLLEEKVSEFASRNGIEVPAFINAGDGKHEHPTQELLDEFTFLEQNN  169 (525)
T ss_pred             CCCCcCHHHHHHHHHHcCCCcEEEEeCCccchhHHHHHHHHHHHHhcCCCcceEEECCCCCCCCchHHHHHHHHHHHHcC
Confidence            5789999999999999999  99999964110                      1                    78898


Q ss_pred             -CCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          37 -RVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        37 -~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                       +++|+||+|+||+.|+||+|||+.++++|| ++|++++|++|+++++++++++++|+++++++
T Consensus       170 ~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~  233 (525)
T PRK13376        170 FDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS  233 (525)
T ss_pred             CCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence             799999999999988899999999999998 99999999999999999999999999998765

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=99.92  E-value=7.6e-25  Score=166.19  Aligned_cols=96  Identities=43%  Similarity=0.614  Sum_probs=88.9

Q ss_pred             CCCCCHHHHHHHHhhc-cCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEEC
Q psy4411           2 MMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMVG   47 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~vG   47 (99)
                      .||||+.||+++|+.| +|+||+||+..++.                                 +|+||.++|+||+++|
T Consensus        86 ~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivG  165 (316)
T COG0540          86 KKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVG  165 (316)
T ss_pred             cccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCCceEECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEc
Confidence            6899999999999999 99999999977654                                 7899999999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      |..||||+||++.++++||.+|.+++|+.+.||+++++.+.+.|..+...
T Consensus       166 DlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~  215 (316)
T COG0540         166 DLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEH  215 (316)
T ss_pred             cccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEe
Confidence            99999999999999999999999999999999999999999887655443

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=99.92  E-value=5.8e-25  Score=166.99  Aligned_cols=81  Identities=38%  Similarity=0.635  Sum_probs=76.0

Q ss_pred             CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vG   47 (99)
                      +++|||++||++|||+| +|+||+||+.|+.+                                +|++|.++|+||+|+|
T Consensus        84 ~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vG  163 (305)
T PRK00856         84 VSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVG  163 (305)
T ss_pred             CCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            36899999999999999 99999999999977                                7889999999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCH
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE   81 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~   81 (99)
                      |+.|+||+|||+.++++||++|++++|++|+|++
T Consensus       164 D~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~  197 (305)
T PRK00856        164 DIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG  197 (305)
T ss_pred             CCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc
Confidence            9987789999999999999999999999998664

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=99.92  E-value=3.7e-24  Score=164.40  Aligned_cols=97  Identities=21%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCCc----------hhH------------------------------HHHhcCC-CC
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPEP----------GAV------------------------------KEEMGRV-NG   40 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~~----------~~~------------------------------~e~~g~l-~g   40 (99)
                      .+|||++||++|||+|+|+|++||+.+          ..+                              +|++|.+ +|
T Consensus        90 ~kgEsl~Dtarvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~~HPtQaLaDl~Ti~e~~g~~~~g  169 (335)
T PRK04523         90 ETEEHIREVARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETITHPCQELAHALALQEHFGTTLRG  169 (335)
T ss_pred             CCCcCHHHHHHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCCCChHHHHHHHHHHHHHhCCccCC
Confidence            589999999999999999999999975          222                              6889999 89


Q ss_pred             cEE--EEECCC--CCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          41 LTI--TMVGDL--KNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i--~~vGd~--~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +||  +|+||+  .||||+|||+.++++||++|++++| ++|++++++++++    +++|+++++++
T Consensus       170 ~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  236 (335)
T PRK04523        170 KKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH  236 (335)
T ss_pred             CEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            998  788864  3678999999999999999999999 9999999998764    46788888764

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=99.91  E-value=1.5e-24  Score=165.07  Aligned_cols=82  Identities=26%  Similarity=0.381  Sum_probs=75.8

Q ss_pred             CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEE
Q psy4411           1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMV   46 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~v   46 (99)
                      +++|||++||+++||+| +|+||+||+.|+.+                                 +|++|+++|+||+|+
T Consensus        84 ~~kgEsl~Dtarvls~y~~D~iv~R~~~~~~~~~~a~~~~~vPvINag~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~v  163 (310)
T PRK13814         84 ISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTII  163 (310)
T ss_pred             CCCCCCHHHHHHHHHHhCCCEEEEeCCchhHHHHHHHhCCCCCeEECCcCCCCCchHHHHHHHHHHHHhCCcCCcEEEEE
Confidence            57899999999999999 69999999998866                                 788999999999999


Q ss_pred             CCCCCchhHHHHHHHHhhCCC-EEEEECCCCCCCCHH
Q psy4411          47 GDLKNGRTVHSLARLLTLYDV-KLNYVSPPNLGMPES   82 (99)
Q Consensus        47 Gd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~~~~~   82 (99)
                      ||++++||+|||+.++++||+ +|++++|++|.|++.
T Consensus       164 GD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~  200 (310)
T PRK13814        164 GDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKV  200 (310)
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCcc
Confidence            999877999999999999999 999999999976543

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=99.90  E-value=2.3e-23  Score=162.95  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=83.3

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCC-----ch----------------------hH--------------------HH
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PG----------------------AV--------------------KE   33 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~----------------------~~--------------------~e   33 (99)
                      +++|||++|||+|||+|+|+||+||+.     +.                      .+                    +|
T Consensus        98 ~~kGEsl~DTarvLs~y~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E  177 (395)
T PRK07200         98 IAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIE  177 (395)
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCCeEEECCCCCCCcHHHHHHHHHHHH
Confidence            478999999999999999999999952     21                      12                    78


Q ss_pred             HhcC---CCCcEEEEECC-----CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH----HHhcCCeEEEEe
Q psy4411          34 EMGR---VNGLTITMVGD-----LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF----VASKGKQQEVYE   98 (99)
Q Consensus        34 ~~g~---l~g~~i~~vGd-----~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~~~~~~~   98 (99)
                      ++|.   ++|+||+|+||     +.++||+||++.++++||++|++++|++|++++++++.    ++++|+++++++
T Consensus       178 ~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~  254 (395)
T PRK07200        178 HFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN  254 (395)
T ss_pred             HhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            8997   88889999876     44457999999999999999999999999999998876    456788898765

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=99.90  E-value=7.5e-23  Score=158.35  Aligned_cols=98  Identities=17%  Similarity=0.264  Sum_probs=81.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCC-----chh--------------------H----------------------HH
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PGA--------------------V----------------------KE   33 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~~--------------------~----------------------~e   33 (99)
                      +++|||++||++|||+|+|+||+||+.     +..                    +                      +|
T Consensus        81 ~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~vPVINa~~~~~HPtQaLaDl~Ti~e  160 (357)
T TIGR03316        81 IGHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQE  160 (357)
T ss_pred             CCCCCCHHHHHHHHHHhCcEEEEeCCCccccccHHHHHHHHhhhhccccccccCCCCEEECCCCCCCchHHHHHHHHHHH
Confidence            478999999999999999999999942     221                    2                      68


Q ss_pred             HhcC---CCCcEEEEEC--CCCCc---hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          34 EMGR---VNGLTITMVG--DLKNG---RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        34 ~~g~---l~g~~i~~vG--d~~n~---rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +||.   ++|+||+++|  |+.+|   ||+|||+.++++||++|++++|++|++++++++.+    +++|+++++++
T Consensus       161 ~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~  237 (357)
T TIGR03316       161 KFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN  237 (357)
T ss_pred             HhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            8996   6789999664  54333   69999999999999999999999999999998765    46788988764

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=99.86  E-value=2.1e-21  Score=147.87  Aligned_cols=91  Identities=20%  Similarity=0.163  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEECCCCC
Q psy4411           5 SNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVGDLKN   51 (99)
Q Consensus         5 Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vGd~~n   51 (99)
                      |+++||+++||+|+|+|++||+.++.+                               +|++|  .++|+||+|+||++ 
T Consensus        85 ~~~~dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~-  163 (311)
T PRK14804         85 SDIDLEARYLSRNVSVIMARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHN-  163 (311)
T ss_pred             ccHHHHHHHHHhcCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCC-
Confidence            789999999999999999999999876                               78899  79999999999954 


Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCC--CHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGM--PESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~--~~~~~~~a~~~g~~~~~~~   98 (99)
                       ||+|||+.++++||++|++++|+++..  .+...+.+++.| .+++++
T Consensus       164 -rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g-~i~~~~  210 (311)
T PRK14804        164 -NVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKG-TLSWEM  210 (311)
T ss_pred             -cHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcC-CeEEEe
Confidence             699999999999999999999999631  122334455555 566543

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=99.46  E-value=1.4e-13  Score=95.76  Aligned_cols=59  Identities=29%  Similarity=0.537  Sum_probs=49.4

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC--HHHHHHH----HhcCCeEEEEe
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP--ESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~--~~~~~~a----~~~g~~~~~~~   98 (99)
                      +|+||+|+|| .++||+|||+.++++||+++++++|+++.++  +++++.+    +++|.++++++
T Consensus         1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~   65 (158)
T PF00185_consen    1 KGLKIAYVGD-GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD   65 (158)
T ss_dssp             TTEEEEEESS-TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred             CCCEEEEECC-CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence            6899999999 6569999999999999999999999996544  4777554    46688888764

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=98.99  E-value=8.9e-10  Score=75.79  Aligned_cols=62  Identities=35%  Similarity=0.567  Sum_probs=49.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||++|||+|+|+||+|++.++.+.+ +......-|.-.|| .+.--+++|+.+++.
T Consensus        78 ~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~-~a~~~~vPVINa~~-~~~HPtQaL~Dl~Ti  139 (142)
T PF02729_consen   78 LGKGESLEDTARVLSRYVDAIVIRHPSHGALEE-LAEHSSVPVINAGD-DHEHPTQALADLFTI  139 (142)
T ss_dssp             TTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHH-HHHHCSSEEEEEEE-SSBSHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHhhheEEEEeccchHHHH-HHHhccCCeEcCcC-CCCChHHHHHHHHHH
Confidence            468999999999999999999999999998844 33344677877787 333488999887764

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.53  E-value=0.044  Score=35.10  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      +++|+++.++|.++   ++..-+..+...|.++++++|+.
T Consensus         4 ~l~~~~vlVvGgG~---va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGP---VAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESH---HHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECCch
Confidence            58899999999954   99999999999999999999974

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.46  E-value=0.21  Score=36.00  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA   88 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~   88 (99)
                      +++|+++++||-+.   ++..-+..+...|.++++++|+   +.+++.+.++
T Consensus         6 ~l~gk~vlVvGgG~---va~rk~~~Ll~~ga~VtVvsp~---~~~~l~~l~~   51 (205)
T TIGR01470         6 NLEGRAVLVVGGGD---VALRKARLLLKAGAQLRVIAEE---LESELTLLAE   51 (205)
T ss_pred             EcCCCeEEEECcCH---HHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHH
Confidence            48899999999875   8999899999999999999995   3355544443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.84  E-value=0.32  Score=34.89  Aligned_cols=47  Identities=21%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS   89 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~   89 (99)
                      +++|+++.++|.+.   ++...+..+...|.++++++|+   +.+++.+.+.+
T Consensus         7 ~l~~k~vLVIGgG~---va~~ka~~Ll~~ga~V~VIs~~---~~~~l~~l~~~   53 (202)
T PRK06718          7 DLSNKRVVIVGGGK---VAGRRAITLLKYGAHIVVISPE---LTENLVKLVEE   53 (202)
T ss_pred             EcCCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEcCC---CCHHHHHHHhC
Confidence            58999999999965   9999999999999999999983   44555444443

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.82  E-value=0.35  Score=35.69  Aligned_cols=46  Identities=9%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA   88 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~   88 (99)
                      .++|+++..||.+.   |+-.=+..+.++|.+|++++|+   +.+++.+.++
T Consensus        22 ~~~~~~VLVVGGG~---VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~   67 (223)
T PRK05562         22 LSNKIKVLIIGGGK---AAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKK   67 (223)
T ss_pred             ECCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHh
Confidence            37789999999976   8888888889999999999996   4566655444

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.08  E-value=0.46  Score=28.54  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=38.5

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC---CHHH----HHHHHhcCCeEEE
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM---PESI----QEFVASKGKQQEV   96 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~---~~~~----~~~a~~~g~~~~~   96 (99)
                      +++++|.+.   ++-.++..++.+|.+++++.+...-+   +++.    .+.+++.|+++..
T Consensus         1 ~vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~   59 (80)
T PF00070_consen    1 RVVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT   59 (80)
T ss_dssp             EEEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence            588999865   88899999999999999999865533   4554    3446677766543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=93.04  E-value=0.63  Score=34.90  Aligned_cols=56  Identities=29%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH----HHhcCCeEEEE
Q psy4411          33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF----VASKGKQQEVY   97 (99)
Q Consensus        33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~~~~~~   97 (99)
                      -+.|+|.|++|.++||..    +-|++.+++.++.+++++     ++++.+++.    |++.|.+++.+
T Consensus        38 ~~~gdL~gk~il~lGDDD----LtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~i~~~   97 (243)
T PF01861_consen   38 AERGDLEGKRILFLGDDD----LTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLPIEAV   97 (243)
T ss_dssp             HHTT-STT-EEEEES-TT-----HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT--EEEE
T ss_pred             HhcCcccCCEEEEEcCCc----HHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCceEEE
Confidence            345889999999999965    478888888888887774     688887765    45667776543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=92.92  E-value=0.95  Score=32.63  Aligned_cols=58  Identities=17%  Similarity=0.124  Sum_probs=43.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.+.+.+|+-...   ||...|++.+|..+|++++++.|++.  ++.-.+.++..|+++...+
T Consensus        46 g~~~~~~vv~~ss---GN~g~alA~~a~~~g~~~~v~~p~~~--~~~~~~~~~~~Ga~v~~~~  103 (244)
T cd00640          46 GKLPKGVIIESTG---GNTGIALAAAAARLGLKCTIVMPEGA--SPEKVAQMRALGAEVVLVP  103 (244)
T ss_pred             CCCCCCEEEEeCC---cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence            3333445444433   34899999999999999999999875  5666778888898887654

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=92.76  E-value=0.66  Score=36.78  Aligned_cols=56  Identities=11%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC---CCCCHHHHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN---LGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~---~~~~~~~~~~a~~~g~~~~~   96 (99)
                      ..|++++.+|.++   ++-.++..+.++|.+|+++....   +......++.+++.|+++..
T Consensus       270 ~~gk~VvVIGgG~---~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~  328 (449)
T TIGR01316       270 YAGKSVVVIGGGN---TAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF  328 (449)
T ss_pred             cCCCeEEEECCCH---HHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence            3578999999874   89999999999999999998753   22334455678888887753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.76  E-value=0.26  Score=34.04  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      +++|++|.++|-+.   ++...+..+...|.++++++|+
T Consensus        10 ~l~~~~vlVvGGG~---va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         10 NLHNKVVVIIGGGK---IAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             EcCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcCc
Confidence            58999999999865   9999999999999999999985

>PRK10717 cysteine synthase A; Provisional

Probab=92.46  E-value=0.49  Score=36.01  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||.+.|++.+|+++|++++++.|++.  ++.-++.++..|+++..++
T Consensus        72 sGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~~~~~GA~V~~~~  117 (330)
T PRK10717         72 AGNTGIGLALVAAARGYKTVIVMPETQ--SQEKKDLLRALGAELVLVP  117 (330)
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Confidence            345999999999999999999999874  5667788899999987664

>TIGR01139 cysK cysteine synthase A

Probab=92.44  E-value=1  Score=33.65  Aligned_cols=55  Identities=18%  Similarity=0.120  Sum_probs=41.0

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .|.+|+-.-.+   |.+.|++..++++|++++++.|++.  ++.-++..+..|+++..+.
T Consensus        56 ~g~~vv~aSsG---N~g~alA~~a~~~Gl~~~i~vp~~~--~~~k~~~~~~~GA~v~~~~  110 (298)
T TIGR01139        56 PGKTIVEPTSG---NTGIALAMVAAARGYKLILTMPETM--SIERRKLLKAYGAELVLTP  110 (298)
T ss_pred             CCCEEEEeCCC---hhHHHHHHHHHHcCCeEEEEeCCcc--CHHHHHHHHHcCCEEEEEC
Confidence            44555333333   4899999999999999999999874  3455677888898887653

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=92.44  E-value=0.61  Score=33.96  Aligned_cols=49  Identities=20%  Similarity=0.272  Sum_probs=40.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG   91 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g   91 (99)
                      +++|+++++||-+.   |+.==+..+...|.++++++|+-   .+++...+++.+
T Consensus         9 ~l~~k~VlvvGgG~---va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~   57 (210)
T COG1648           9 DLEGKKVLVVGGGS---VALRKARLLLKAGADVTVVSPEF---EPELKALIEEGK   57 (210)
T ss_pred             EcCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcC
Confidence            58999999999876   88778889999999999999976   566666555544

>PRK12831 putative oxidoreductase; Provisional

Probab=92.42  E-value=0.81  Score=36.56  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCCH--HHHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMPE--SIQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~--~~~~~a~~~g~~~~~   96 (99)
                      ..|++|+++|.++   ++-..+..+.++|.+|++++.... +++.  ..++.+++.|+.+..
T Consensus       279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~  337 (464)
T PRK12831        279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL  337 (464)
T ss_pred             cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence            4678999999975   899999999999999999987543 2333  334557777877653

>PRK11761 cysM cysteine synthase B; Provisional

Probab=92.27  E-value=0.98  Score=34.07  Aligned_cols=55  Identities=16%  Similarity=0.245  Sum_probs=42.8

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .|.+|+-.-.   ||.+.|++..|+++|++++++.|+..  ++.-++.++..|+++...+
T Consensus        62 ~g~~vv~aSs---GN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~v~~~~  116 (296)
T PRK11761         62 PGDTLIEATS---GNTGIALAMIAAIKGYRMKLIMPENM--SQERRAAMRAYGAELILVP  116 (296)
T ss_pred             CCCEEEEeCC---ChHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence            3456655433   34899999999999999999999864  5666788888999887664

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=92.03  E-value=0.93  Score=31.74  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++.+|..+.  |.+.+..++..-|+.|+++....
T Consensus        27 L~~~~~~l~Gk~v~VvGrs~~--VG~Pla~lL~~~~atVt~~h~~T   70 (160)
T PF02882_consen   27 LEYYGIDLEGKKVVVVGRSNI--VGKPLAMLLLNKGATVTICHSKT   70 (160)
T ss_dssp             HHHTT-STTT-EEEEE-TTTT--THHHHHHHHHHTT-EEEEE-TTS
T ss_pred             HHhcCCCCCCCEEEEECCcCC--CChHHHHHHHhCCCeEEeccCCC
Confidence            45555 799999999999887  99999999999999999998765

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.93  E-value=2  Score=32.87  Aligned_cols=41  Identities=12%  Similarity=0.160  Sum_probs=35.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .++++ +++|++++.+|.++.  |.+-++.++..-|+.|+++.-
T Consensus       148 L~~~~i~l~Gk~vvVvGrs~~--VG~Pla~lL~~~gAtVtv~hs  189 (285)
T PRK14191        148 LKHYHIEIKGKDVVIIGASNI--VGKPLAMLMLNAGASVSVCHI  189 (285)
T ss_pred             HHHhCCCCCCCEEEEECCCch--hHHHHHHHHHHCCCEEEEEeC
Confidence            45555 699999999999887  999999999999999999864

>PLN00011 cysteine synthase

Probab=91.88  E-value=0.66  Score=35.39  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||.+.|++.+++++|++++++.|+..  ++.-++.++..|+.+..++
T Consensus        76 SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~i~~~GA~V~~~~  122 (323)
T PLN00011         76 TAGNTGIGLACIGAARGYKVILVMPSTM--SLERRIILRALGAEVHLTD  122 (323)
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Confidence            4445999999999999999999999874  4666778888898887653

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.62  E-value=1.4  Score=33.67  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|.++-  |.+-++.++...|+.|+++.-..
T Consensus       149 L~~~~i~l~Gk~vvViGrs~i--VGkPla~lL~~~~atVt~~hs~t  192 (285)
T PRK14189        149 LESIGIPLRGAHAVVIGRSNI--VGKPMAMLLLQAGATVTICHSKT  192 (285)
T ss_pred             HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEecCCC
Confidence            45555 799999999999886  89999999999999999987543

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=91.57  E-value=0.78  Score=34.15  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=38.5

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||.++|++..|+++|++++++.|+.  .++.-++.++..|+++..++
T Consensus        60 SsGN~g~alA~~a~~~G~~~~i~vp~~--~~~~k~~~~~~~Ga~v~~~~  106 (291)
T cd01561          60 TSGNTGIGLAMVAAAKGYRFIIVMPET--MSEEKRKLLRALGAEVILTP  106 (291)
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEECCC--CCHHHHHHHHHcCCEEEEeC
Confidence            344599999999999999999999986  45666678888899887654

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=1.1  Score=34.26  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHHHhc
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFVASK   90 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a~~~   90 (99)
                      .+++++|+.+|.++   .+-.+++.+++++-+|++++. +.|...+..+++++++
T Consensus       140 ~~~~k~v~ViGgG~---sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~  191 (305)
T COG0492         140 FFKGKDVVVIGGGD---SAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKN  191 (305)
T ss_pred             cccCCeEEEEcCCH---HHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhc
Confidence            37788999999865   788999999999999999988 4677778888888877

>TIGR01138 cysM cysteine synthase B

Probab=91.46  E-value=1.5  Score=32.87  Aligned_cols=54  Identities=17%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |.+|+-...   ||.+.|++..|+++|++++++.|+..  ++.-.+.++..|+++..++
T Consensus        59 g~~vv~aSs---GN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~v~~v~  112 (290)
T TIGR01138        59 GDVLIEATS---GNTGIALAMIAALKGYRMKLLMPDNM--SQERKAAMRAYGAELILVT  112 (290)
T ss_pred             CCEEEEECC---ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence            445555333   34899999999999999999999874  4556677888999887653

Alternate name: O-acetylserine (thiol)-lyase

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=91.40  E-value=1.3  Score=33.76  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=42.9

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.+|+-.+.+   |...|++.+|+++|++++++.|+.  .++.-++.++..|+++....
T Consensus        51 ~~~vv~aSsG---N~g~alA~~a~~~G~~~~iv~p~~--~~~~k~~~l~~~GA~v~~~~  104 (316)
T cd06448          51 CVHVVCSSGG---NAGLAAAYAARKLGVPCTIVVPES--TKPRVVEKLRDEGATVVVHG  104 (316)
T ss_pred             CCeEEEeCCc---HHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            4566666653   389999999999999999999986  45666788888999887653

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.37  E-value=1.7  Score=33.24  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=38.2

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.+|.++-  |.+-+..++.+-|+.|++|....-
T Consensus       148 L~~~~i~l~Gk~vvVvGrS~i--VGkPla~lL~~~~atVtichs~T~  192 (284)
T PRK14170        148 IKSTGTQIEGKRAVVIGRSNI--VGKPVAQLLLNENATVTIAHSRTK  192 (284)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            45566 799999999999887  999999999999999999998663

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=91.24  E-value=0.72  Score=34.81  Aligned_cols=46  Identities=20%  Similarity=0.081  Sum_probs=38.4

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...|++.+++.+|++++++.|++.  ++.-++.++..|+++..++
T Consensus        78 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~GA~Vi~~~  123 (324)
T cd01563          78 TGNTSASLAAYAARAGIKCVVFLPAGK--ALGKLAQALAYGATVLAVE  123 (324)
T ss_pred             CCHHHHHHHHHHHHcCCceEEEEeCCC--CHHHHHHHHHcCCEEEEEC
Confidence            345999999999999999999999886  5666677888899887654

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK10637 cysG siroheme synthase; Provisional

Probab=91.23  E-value=0.94  Score=36.29  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA   88 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~   88 (99)
                      +++|+++.+||-+.   |+--=+..+..+|.++++++|+   +.+++.+.++
T Consensus         9 ~l~~~~vlvvGgG~---vA~rk~~~ll~~ga~v~visp~---~~~~~~~l~~   54 (457)
T PRK10637          9 QLRDRDCLLVGGGD---VAERKARLLLDAGARLTVNALA---FIPQFTAWAD   54 (457)
T ss_pred             EcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHh
Confidence            58999999999975   8888888888899999999995   4566654443

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=91.22  E-value=0.8  Score=34.03  Aligned_cols=53  Identities=15%  Similarity=0.244  Sum_probs=41.4

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .+|+..+.   ||...|++..|+++|++++++.|++.  +++-++.++..|.++..++
T Consensus        66 ~~iv~~ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~Ga~vi~~~  118 (304)
T cd01562          66 KGVVAASA---GNHAQGVAYAAKLLGIPATIVMPETA--PAAKVDATRAYGAEVVLYG  118 (304)
T ss_pred             CcEEEECC---CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence            44555543   45999999999999999999999875  4556677888898887654

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.09  E-value=2  Score=32.76  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=38.0

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.+|..+-  |.+-++.++..-|+.|++|+...-
T Consensus       147 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~atVtichs~T~  191 (282)
T PRK14169        147 LDAYDIDVAGKRVVIVGRSNI--VGRPLAGLMVNHDATVTIAHSKTR  191 (282)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEECCCCC
Confidence            45555 799999999999887  999999999999999999987654

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.84  E-value=2.2  Score=32.64  Aligned_cols=44  Identities=14%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .|+++ +++|++++.+|.++-  |.+-+..++.+-|+.|++|....-
T Consensus       148 l~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~AtVtichs~T~  192 (282)
T PRK14182        148 LDEARVDPKGKRALVVGRSNI--VGKPMAMMLLERHATVTIAHSRTA  192 (282)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            45555 699999999999887  999999999999999999988654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.83  E-value=2.2  Score=32.54  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=37.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .|+++ +++|++++.+|..+-  |.+-+..++..-|+.|++|.-...
T Consensus       149 L~~~~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~AtVt~chs~T~  193 (278)
T PRK14172        149 IKSLNIDIEGKEVVVIGRSNI--VGKPVAQLLLNENATVTICHSKTK  193 (278)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            45555 699999999999887  999999999999999999986553

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.80  E-value=1.5  Score=35.26  Aligned_cols=57  Identities=12%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      ..++|++|+.+-...-  -.--|+..+...|++|.+++|.-+..++++.+.+.+.|+.+
T Consensus        44 ~pl~G~~i~~~~Hl~~--~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v  100 (425)
T PRK05476         44 KPLKGARIAGCLHMTI--QTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPV  100 (425)
T ss_pred             CCCCCCEEEEEEeccc--cHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceE
Confidence            5699999999987654  34467778888999999999988889999998888888664

>PLN02565 cysteine synthase

Probab=90.74  E-value=1  Score=34.46  Aligned_cols=44  Identities=18%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |.+.|++..+..+|..++++.|++  .++.-++.++..|+++..+.
T Consensus        77 N~g~alA~~a~~~G~~~~ivvp~~--~~~~k~~~i~~~GA~V~~~~  120 (322)
T PLN02565         77 NTGIGLAFMAAAKGYKLIITMPAS--MSLERRIILLAFGAELVLTD  120 (322)
T ss_pred             hHHHHHHHHHHHcCCeEEEEeCCC--CcHHHHHHHHHcCCEEEEeC
Confidence            499999999999999999999987  56677788888898887653

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.72  E-value=1.6  Score=33.56  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .++++ +++|++|+++|-++.  |.+-++..+.+-|.+|+++.-
T Consensus       150 L~~~~i~l~Gk~V~vIG~s~i--vG~PmA~~L~~~gatVtv~~~  191 (301)
T PRK14194        150 LEDTCGDLTGKHAVVIGRSNI--VGKPMAALLLQAHCSVTVVHS  191 (301)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEECC
Confidence            45566 799999999999876  999999999999999999954

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.57  E-value=1.6  Score=33.33  Aligned_cols=43  Identities=9%  Similarity=0.196  Sum_probs=36.8

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ .++|++++.+|.+..  |.+.++.++...|++|+++.-..
T Consensus       149 l~~~~i~l~Gk~vvVIGrs~~--VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        149 LKHADIDLEGKNAVVIGRSHI--VGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             HHHcCCCCCCCEEEEECCCch--hHHHHHHHHHHCCCeEEEEeCCc
Confidence            45555 799999999999886  99999999999999999998643

>PRK08246 threonine dehydratase; Provisional

Probab=90.38  E-value=0.98  Score=34.26  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||.+.|++..|+++|++++++.|++  .++.-++.++..|+++..++
T Consensus        77 GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  121 (310)
T PRK08246         77 GNAGLAVAYAAAALGVPATVFVPET--APPAKVARLRALGAEVVVVG  121 (310)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHCCCEEEEeC
Confidence            4599999999999999999999987  44556678888898887653

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.32  E-value=1.4  Score=30.09  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++++|..+.  +..-++..+.+-|++++++.-..
T Consensus        19 l~~~~~~~~gk~v~VvGrs~~--vG~pla~lL~~~gatV~~~~~~t   62 (140)
T cd05212          19 LNKEGVRLDGKKVLVVGRSGI--VGAPLQCLLQRDGATVYSCDWKT   62 (140)
T ss_pred             HHHcCCCCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEeCCCC
Confidence            34555 799999999999886  99999999999999999998543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.30  E-value=0.65  Score=32.31  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .+.|+||+++|=++   +.+..+..+.-|||+|....|..
T Consensus        33 ~l~g~tvgIiG~G~---IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   33 ELRGKTVGIIGYGR---IGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             -STTSEEEEESTSH---HHHHHHHHHHHTT-EEEEEESSC
T ss_pred             ccCCCEEEEEEEcC---CcCeEeeeeecCCceeEEecccC
Confidence            59999999999854   99999999999999999999844

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.25  E-value=2.5  Score=32.34  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=37.8

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.+|..+.  |.+-+..++..-|+.|++|+...-
T Consensus       146 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~aTVtichs~T~  190 (287)
T PRK14173        146 LKHYGIPLAGKEVVVVGRSNI--VGKPLAALLLREDATVTLAHSKTQ  190 (287)
T ss_pred             HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEeCCCCC
Confidence            45566 799999999999887  999999999999999999987553

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=90.19  E-value=1.8  Score=34.06  Aligned_cols=53  Identities=23%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      |.+|+-.   ..||.+.|++.+|+++|++++++.|+.  .+++-++..+..|+++..+
T Consensus        62 g~~vv~~---ssGN~g~alA~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~v~~~  114 (454)
T TIGR01137        62 GDTIIEP---TSGNTGIGLALVAAIKGYKCIIVLPEK--MSNEKVDVLKALGAEIVRT  114 (454)
T ss_pred             CCEEEEe---CCcHHHHHHHHHHHHcCCeEEEEeCCC--cCHHHHHHHHHCCCEEEEc
Confidence            4455544   334599999999999999999999986  3455667778888887654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR01136 cysKM cysteine synthases

Probab=90.14  E-value=2.3  Score=31.84  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||.+.|++..++.+|++.+++-|+.  .++.-++.++..|+++...
T Consensus        67 GN~g~alA~~a~~~G~~~~i~vp~~--~~~~k~~~~~~~GA~v~~~  110 (299)
T TIGR01136        67 GNTGIALAMVAAAKGYKLILTMPET--MSLERRKLLRAYGAELILT  110 (299)
T ss_pred             ChHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHcCCEEEEe
Confidence            3489999999999999999999987  3455567788888888764

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=89.96  E-value=0.6  Score=31.15  Aligned_cols=40  Identities=20%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECC
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSP   74 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P   74 (99)
                      ++.+++++++++.++|-+.   ++++.+..+...|.+ ++++.-
T Consensus         4 ~~~~~~l~~~~vlviGaGg---~ar~v~~~L~~~g~~~i~i~nR   44 (135)
T PF01488_consen    4 KKKFGDLKGKRVLVIGAGG---AARAVAAALAALGAKEITIVNR   44 (135)
T ss_dssp             CTHHSTGTTSEEEEESSSH---HHHHHHHHHHHTTSSEEEEEES
T ss_pred             HHhcCCcCCCEEEEECCHH---HHHHHHHHHHHcCCCEEEEEEC
Confidence            4568899999999999865   999999999999975 888875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.52  E-value=3.2  Score=31.95  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=38.1

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .|+++ +++|++++.+|..+-  |.+-+..++..-|+.|++|+...-
T Consensus       149 L~~~~i~l~Gk~vvVIGrS~i--VGkPla~lL~~~~atVtv~hs~T~  193 (297)
T PRK14186        149 LRSQQIDIAGKKAVVVGRSIL--VGKPLALMLLAANATVTIAHSRTQ  193 (297)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            45566 799999999999887  999999999999999999987653

>PRK07476 eutB threonine dehydratase; Provisional

Probab=89.30  E-value=1.4  Score=33.43  Aligned_cols=46  Identities=11%  Similarity=0.165  Sum_probs=37.3

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...|++..++++|++++++.|+..  ++.-.+.++..|+++..+.
T Consensus        75 sGN~g~alA~~a~~~G~~~~i~vp~~~--~~~k~~~~~~~GA~V~~~~  120 (322)
T PRK07476         75 TGNHGRALAYAARALGIRATICMSRLV--PANKVDAIRALGAEVRIVG  120 (322)
T ss_pred             CChHHHHHHHHHHHhCCCEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Confidence            345999999999999999999999764  4555677888898887653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.22  E-value=3.2  Score=31.69  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|.++-  |.+-++.++..-|+.|++|.-..
T Consensus       148 L~~~~i~l~Gk~vvViGrS~~--VG~Pla~lL~~~~AtVti~hs~T  191 (281)
T PRK14183        148 LEEYEIDVKGKDVCVVGASNI--VGKPMAALLLNANATVDICHIFT  191 (281)
T ss_pred             HHHcCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCC
Confidence            45555 799999999999887  99999999988899999887544

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.18  E-value=3.2  Score=31.95  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=35.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~   76 (99)
                      .|+++ .++|++++.+|..+-  |.+-++.++.+-    ++.|++|.-..
T Consensus       148 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~aTVtvchs~T  195 (297)
T PRK14167        148 LAAAGVDTEGADVVVVGRSDI--VGKPMANLLIQKADGGNATVTVCHSRT  195 (297)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--cHHHHHHHHhcCccCCCCEEEEeCCCC
Confidence            45666 799999999999887  999999988876    79999987644

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.06  E-value=3.2  Score=31.81  Aligned_cols=43  Identities=19%  Similarity=0.238  Sum_probs=36.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++.+|-++.  |.+-++.++...|+.|++|.-..
T Consensus       155 l~~~~i~l~Gk~vvViGrs~i--VGkPla~lL~~~~atVtv~hs~T  198 (287)
T PRK14176        155 LEEYGVDIEGKNAVIVGHSNV--VGKPMAAMLLNRNATVSVCHVFT  198 (287)
T ss_pred             HHHcCCCCCCCEEEEECCCcc--cHHHHHHHHHHCCCEEEEEeccC
Confidence            45555 699999999999887  99999999999999999998643

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.06  E-value=3.7  Score=31.32  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+.  +.+-++.++...|.+|+++.-..
T Consensus       143 l~~~~i~l~Gk~V~ViGrs~~--vGrpla~lL~~~~atVtv~hs~t  186 (279)
T PRK14178        143 LHEYKISIAGKRAVVVGRSID--VGRPMAALLLNADATVTICHSKT  186 (279)
T ss_pred             HHHcCCCCCCCEEEEECCCcc--ccHHHHHHHHhCCCeeEEEecCh
Confidence            45555 799999999999876  99999999999999999988643

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=88.96  E-value=1.7  Score=32.66  Aligned_cols=47  Identities=11%  Similarity=0.011  Sum_probs=34.4

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||..+|++.+|+.+|++++++.|+...+. .-...++..|+.+.+.
T Consensus        65 ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~~Ga~v~~v  111 (311)
T TIGR01275        65 IQSNHARATALAAKKLGLDAVLVLREKEELN-GNLLLDKLMGAETRVY  111 (311)
T ss_pred             chhHHHHHHHHHHHHhCCceEEEecCCccCC-CCHHHHHHcCCEEEEE
Confidence            3456999999999999999999999864322 2223356778877654

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.95  E-value=3.8  Score=31.39  Aligned_cols=43  Identities=16%  Similarity=0.219  Sum_probs=36.1

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+-  |.+-++.++.+-    ++.|++|.-..
T Consensus       144 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~AtVtvchs~T  191 (287)
T PRK14181        144 LKYYEIPLHGRHVAIVGRSNI--VGKPLAALLMQKHPDTNATVTLLHSQS  191 (287)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHhCcCCCCCEEEEeCCCC
Confidence            45555 799999999999887  999999999887    79999987644

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=88.79  E-value=1  Score=33.13  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=36.7

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||.+.+++.+|+.+|++++++.|+.  .++.-.+.++..|+++..+
T Consensus        65 GN~g~a~A~~a~~~g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~  108 (306)
T PF00291_consen   65 GNHGRALAYAAARLGLKCTIVVPED--VSPEKLKQMRALGAEVILV  108 (306)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEETT--SHHHHHHHHHHTTCEEEEE
T ss_pred             CCceehhhhhhhhccccceeeeccc--cccccccceeeecceEEEc
Confidence            3599999999999999999999988  5556667788889877654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>PRK08198 threonine dehydratase; Provisional

Probab=88.78  E-value=2.6  Score=32.93  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      +.+|+-...   ||.+.+++..|+++|++++++-|+..  ++.-++.++..|+++..+
T Consensus        70 ~~~vv~aSs---GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~Vi~~  122 (404)
T PRK08198         70 ARGVVAASA---GNHAQGVAYAASLLGIKATIVMPETA--PLSKVKATRSYGAEVVLH  122 (404)
T ss_pred             CCEEEEECC---CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEE
Confidence            445655554   34899999999999999999999874  455567788889888665

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=88.77  E-value=1.5  Score=34.31  Aligned_cols=47  Identities=15%  Similarity=0.112  Sum_probs=39.0

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...|++..|+.+|++++++.|+.  .++.-.+.++..|+++...+
T Consensus       118 SsGN~G~alA~~a~~~G~~~~ivvp~~--~~~~k~~~lr~~GA~Vi~~~  164 (368)
T PLN02556        118 TSGNMGISLAFMAAMKGYKMILTMPSY--TSLERRVTMRAFGAELVLTD  164 (368)
T ss_pred             CCchHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            445599999999999999999999986  55666678888999987653

>PRK06815 hypothetical protein; Provisional

Probab=88.68  E-value=1.6  Score=33.09  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||.+.+++..|+++|++++++.|+..  ++.-++.++..|+++..++
T Consensus        76 sGN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~V~~~~  121 (317)
T PRK06815         76 SGNHGQGVALAAKLAGIPVTVYAPEQA--SAIKLDAIRALGAEVRLYG  121 (317)
T ss_pred             CChHHHHHHHHHHHhCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence            345999999999999999999999774  4556677888899887654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.51  E-value=3.5  Score=31.53  Aligned_cols=42  Identities=14%  Similarity=0.187  Sum_probs=34.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++++ +++|++++++|-.+-  |..-++..+.+-|.+|+++..+
T Consensus       149 L~~~~i~l~Gk~v~vIG~S~i--vG~Pla~lL~~~gatVtv~~s~  191 (284)
T PRK14179        149 FREYNVELEGKHAVVIGRSNI--VGKPMAQLLLDKNATVTLTHSR  191 (284)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--CcHHHHHHHHHCCCEEEEECCC
Confidence            45555 699999999999775  8888888888999999998543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.51  E-value=3.2  Score=31.71  Aligned_cols=43  Identities=16%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+-  |.+-++.++..-|+.|++|....
T Consensus       149 L~~~~i~l~Gk~vvViGrS~i--VG~Pla~lL~~~~atVt~chs~t  192 (284)
T PRK14190        149 LKEYNIDISGKHVVVVGRSNI--VGKPVGQLLLNENATVTYCHSKT  192 (284)
T ss_pred             HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEEeCCc
Confidence            45555 799999999999887  99999999999999999987643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.48  E-value=2.6  Score=33.74  Aligned_cols=57  Identities=12%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      .+|+|.+|+.+-...-  -.--|+..+...|++|.++++.-+..++++.+.+.+.|+.+
T Consensus        32 ~p~~g~~i~~~~hl~~--~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v   88 (413)
T cd00401          32 KPLKGARIAGCLHMTV--QTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPV   88 (413)
T ss_pred             CCCCCCEEEEEEcchH--HHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceE
Confidence            4699999999987653  34467777888899999999877888999998888888765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06352 threonine synthase; Validated

Probab=88.43  E-value=1.6  Score=33.77  Aligned_cols=46  Identities=17%  Similarity=0.047  Sum_probs=36.2

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||...+++..++++|++++++-|+.. .++.-++.++..|+++..+
T Consensus        83 sGN~G~AlA~~aa~~G~~~~ivvp~~~-~~~~k~~~~~a~GA~V~~~  128 (351)
T PRK06352         83 TGNTSAAAAAYATRAGLKAYIVIPEGK-VALGKLAQAVMYGADIISI  128 (351)
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEEeCCC-CcHHHHHHHHhcCCEEEEE
Confidence            345899999999999999999999865 3455556677888887654

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.42  E-value=4.1  Score=31.16  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .|+++ +++|++++.+|..+-  |.+-+..++..-|+.|++|....-
T Consensus       150 l~~y~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~atVt~chs~T~  194 (284)
T PRK14177        150 LKEYGIDVTGKNAVVVGRSPI--LGKPMAMLLTEMNATVTLCHSKTQ  194 (284)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            45555 799999999999887  999999999999999999997553

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=88.41  E-value=2.2  Score=31.24  Aligned_cols=35  Identities=23%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      .++.+++|++.|-++   |.+.++..+..+|++++-++
T Consensus        27 ~~l~~~~v~I~G~G~---VG~~~a~~L~~~g~~vv~v~   61 (227)
T cd01076          27 IGLAGARVAIQGFGN---VGSHAARFLHEAGAKVVAVS   61 (227)
T ss_pred             CCccCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence            469999999999643   99999999999999998554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=88.31  E-value=1.7  Score=33.60  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .|+-...   ||.++|++..|+++|++.+++-|+..  ++.-++.++..|+++..+
T Consensus        50 ~vv~aSs---GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~  100 (380)
T TIGR01127        50 GVVAASA---GNHAQGVAYAAKKFGIKAVIVMPESA--PPSKVKATKSYGAEVILH  100 (380)
T ss_pred             EEEEECC---CHHHHHHHHHHHHcCCCEEEEEcCCC--cHHHHHHHHHCCCEEEEE
Confidence            3444444   34899999999999999999999864  455567788888888654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK07048 serine/threonine dehydratase; Validated

Probab=88.29  E-value=1.7  Score=32.88  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=37.0

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||.+.+++..++.+|++++++.|+..  ++.-++.++..|+++..++
T Consensus        81 GN~g~alA~~a~~~G~~~~vvvp~~~--~~~k~~~~~~~GAeV~~~~  125 (321)
T PRK07048         81 GNHAQAIALSARLLGIPATIVMPQDA--PAAKVAATRGYGGEVVTYD  125 (321)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence            45999999999999999999999763  4556677888898887653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=88.19  E-value=1.8  Score=33.22  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=29.5

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      ++|++|+++|-++   +.++++..+...|+++++..++
T Consensus         1 l~~kkIgiIG~G~---mG~AiA~~L~~sG~~Viv~~~~   35 (314)
T TIGR00465         1 LKGKTVAIIGYGS---QGHAQALNLRDSGLNVIVGLRK   35 (314)
T ss_pred             CCcCEEEEEeEcH---HHHHHHHHHHHCCCeEEEEECc
Confidence            5789999999754   9999999999999988766553

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.19  E-value=3.8  Score=31.32  Aligned_cols=43  Identities=19%  Similarity=0.174  Sum_probs=36.8

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++.+|.++-  |.+-++.++...|+.|++|.-..
T Consensus       150 l~~~~i~l~Gk~vvViGrs~i--VG~Pla~lL~~~~atVtv~hs~T  193 (285)
T PRK10792        150 LERYGIDTYGLNAVVVGASNI--VGRPMSLELLLAGCTVTVCHRFT  193 (285)
T ss_pred             HHHcCCCCCCCEEEEECCCcc--cHHHHHHHHHHCCCeEEEEECCC
Confidence            45555 799999999999887  99999999999999999998643

>PLN02970 serine racemase

Probab=88.15  E-value=1.8  Score=33.13  Aligned_cols=46  Identities=24%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...|++..|+.+|++++++-|+..  ++.-.+.++..|+++..++
T Consensus        83 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~Vi~~~  128 (328)
T PLN02970         83 SGNHAAALALAAKLRGIPAYIVVPKNA--PACKVDAVIRYGGIITWCE  128 (328)
T ss_pred             CcHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhcCCEEEEeC
Confidence            345999999999999999999999874  4555567788888887653

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=88.04  E-value=4.4  Score=31.24  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=37.1

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+-  |.+-+..++..-|+.|++|.-..
T Consensus       158 L~~~~i~l~Gk~vvVIGRS~i--VGkPla~lL~~~~ATVtvchs~T  201 (299)
T PLN02516        158 LSRSGIPIKGKKAVVVGRSNI--VGLPVSLLLLKADATVTVVHSRT  201 (299)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCC
Confidence            34555 799999999999887  99999999999999999998754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=87.98  E-value=3  Score=30.05  Aligned_cols=55  Identities=13%  Similarity=0.084  Sum_probs=40.6

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHHHHhc-CCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEFVASK-GKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~a~~~-g~~~~   95 (99)
                      ..+++++++|.+.   ++-.++..++..+.+++++.+. .+...+.+.+.+++. |+++.
T Consensus       139 ~~~~~v~ViG~G~---~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~  195 (300)
T TIGR01292       139 FKNKEVAVVGGGD---SAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL  195 (300)
T ss_pred             cCCCEEEEECCCh---HHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence            3578999999865   6666677778889999998873 455667777778776 76654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07409 threonine synthase; Validated

Probab=87.97  E-value=1.7  Score=33.42  Aligned_cols=48  Identities=15%  Similarity=0.042  Sum_probs=37.5

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++..++.+|++++++-|++. +++.-++.++..|+.+.+++
T Consensus        85 SsGN~g~alA~~a~~~G~~~~ivvP~~~-~~~~k~~~~~~~GA~Vi~~~  132 (353)
T PRK07409         85 STGNTSASAAAYAARAGLKAFVLIPEGK-IALGKLAQAVMYGAEIIQID  132 (353)
T ss_pred             CCcHHHHHHHHHHHHcCCCEEEEEcCCC-CchhhHHHHHhcCCEEEEEC
Confidence            3445899999999999999999999875 34444566677888887654

>PRK06381 threonine synthase; Validated

Probab=87.84  E-value=2.9  Score=31.54  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=37.7

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...|++..|+.+|++++++-|+..  ++.-++.++..|+++..+.
T Consensus        71 sGN~g~alA~~aa~~G~~~~ivvp~~~--~~~~~~~l~~~GA~V~~~~  116 (319)
T PRK06381         71 CGNYGASIAYFARLYGLKAVIFIPRSY--SNSRVKEMEKYGAEIIYVD  116 (319)
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHcCCEEEEcC
Confidence            345999999999999999999999864  5566677888898887653

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=87.82  E-value=2.5  Score=33.93  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=37.7

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||...|++..++.+|++++++-|++  .++.-++.++..|+.+.++.
T Consensus       161 GN~G~slA~~Aa~lG~~~~IvmP~~--a~~~K~~~ir~~GAeVv~~~  205 (431)
T TIGR02035       161 GNLGLSIGIISAALGFQVTVHMSAD--AKQWKKDKLRSKGVTVVEYE  205 (431)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            3499999999999999999999987  56666677888898887653

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=87.67  E-value=3  Score=31.37  Aligned_cols=49  Identities=8%  Similarity=-0.011  Sum_probs=35.7

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCC------HHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMP------ESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~------~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...|++.+|+.+|++++++.|+.....      +.-...++..|.++..++
T Consensus        61 s~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~  115 (307)
T cd06449          61 IQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVS  115 (307)
T ss_pred             chhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEEC
Confidence            3456999999999999999999999764311      122345677788776553

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=87.62  E-value=3.6  Score=29.36  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=32.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      ..++++++.++|-...  +..+++..++..|.++++++..
T Consensus         3 ~~~~~k~~lItGa~~g--IG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          3 SDLEGKVVVITGGSTG--LGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             cCCCCCEEEEeCCCCh--HHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999998664  9999999999999999887663

>PRK08329 threonine synthase; Validated

Probab=87.44  E-value=3.6  Score=31.69  Aligned_cols=52  Identities=12%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .+|+....+   |.+.|++..++++|++++++.|+.  .++.-+..++..|+++...
T Consensus       105 ~~vv~aSsG---N~g~alA~~aa~~G~~~~v~vp~~--~~~~k~~~~~~~GA~v~~v  156 (347)
T PRK08329        105 NEVVIDSSG---NAALSLALYSLSEGIKVHVFVSYN--ASKEKISLLSRLGAELHFV  156 (347)
T ss_pred             CEEEEECCC---cHHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHHcCCEEEEE
Confidence            455555543   489999999999999999999986  4555567778888888665

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.43  E-value=4.6  Score=31.09  Aligned_cols=44  Identities=16%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.+|..+.  |.+-++.++..-    ++.|++|+-+.-
T Consensus       152 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~atVtv~hs~T~  200 (297)
T PRK14168        152 LVRSGVETSGAEVVVVGRSNI--VGKPIANMMTQKGPGANATVTIVHTRSK  200 (297)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--ccHHHHHHHHhcccCCCCEEEEecCCCc
Confidence            35555 799999999999887  999999888876    789999876543

>PRK06608 threonine dehydratase; Provisional

Probab=87.31  E-value=2.1  Score=32.97  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||...+++..|+.+|++++++-|+..  ++.-++.++..|+++..+
T Consensus        79 SsGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~l~~~GA~V~~~  124 (338)
T PRK06608         79 STGNHGQAVAYASKLFGIKTRIYLPLNT--SKVKQQAALYYGGEVILT  124 (338)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEE
Confidence            3456999999999999999999999874  556667788889988765

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.16  E-value=4.1  Score=31.25  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      .|+++ +++|++|+++|....  +.+-++..+.+-|.+|+++.
T Consensus       149 l~~~~i~~~Gk~V~viGrs~~--mG~PmA~~L~~~g~tVtv~~  189 (296)
T PRK14188        149 LRRVHGDLSGLNAVVIGRSNL--VGKPMAQLLLAANATVTIAH  189 (296)
T ss_pred             HHHhCCCCCCCEEEEEcCCcc--hHHHHHHHHHhCCCEEEEEC
Confidence            35544 799999999998776  99999999999999999995

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.16  E-value=5.2  Score=30.74  Aligned_cols=44  Identities=11%  Similarity=0.148  Sum_probs=36.1

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.+|..+-  |.+-+..++..-    ++.|++|.-...
T Consensus       148 L~~~~i~l~GK~vvViGrS~i--VGkPla~lL~~~~~~~~aTVtvchs~T~  196 (293)
T PRK14185        148 LKRYHIETSGKKCVVLGRSNI--VGKPMAQLMMQKAYPGDCTVTVCHSRSK  196 (293)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHcCCCCCCCEEEEecCCCC
Confidence            45555 699999999999887  999888888775    799999986554

>PRK07334 threonine dehydratase; Provisional

Probab=87.16  E-value=2.1  Score=33.64  Aligned_cols=45  Identities=16%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||...+++..|+.+|++++++.|++.  ++.-++.++..|+++..++
T Consensus        80 GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~v~~~~  124 (403)
T PRK07334         80 GNHAQGVAYHAQRLGIPATIVMPRFT--PTVKVERTRGFGAEVVLHG  124 (403)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEEC
Confidence            44899999999999999999999875  3555577888899887653

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.13  E-value=5.3  Score=30.65  Aligned_cols=43  Identities=12%  Similarity=0.204  Sum_probs=36.8

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      ++++ +++|++++.+|..+-  |.+-+..++..-|+.|++|.-+..
T Consensus       151 ~~y~i~l~GK~vvViGrS~i--VGkPla~lL~~~~ATVtichs~T~  194 (288)
T PRK14171        151 KKYEPNLTGKNVVIIGRSNI--VGKPLSALLLKENCSVTICHSKTH  194 (288)
T ss_pred             HHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence            4444 699999999999887  999999999988999999987654

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.08  E-value=5.7  Score=30.37  Aligned_cols=43  Identities=9%  Similarity=0.111  Sum_probs=36.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++.+|-++.  |.+-++.++..-|+.|++|.-..
T Consensus       148 L~~y~i~l~Gk~vvVvGrS~i--VGkPla~lL~~~~atVt~chs~T  191 (282)
T PRK14166        148 LKAYEIDLEGKDAVIIGASNI--VGRPMATMLLNAGATVSVCHIKT  191 (282)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCC
Confidence            45555 699999999999887  99999999998999999998644

>CHL00073 chlN photochlorophyllide reductase subunit N

Probab=87.04  E-value=2.2  Score=34.71  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++|+|++|+||..   -+.|++..+..+||+++.++-+
T Consensus       311 ~L~GKrvai~Gdp~---~~i~LarfL~elGmevV~vgt~  346 (457)
T CHL00073        311 LVRGKSVFFMGDNL---LEISLARFLIRCGMIVYEIGIP  346 (457)
T ss_pred             HHCCCEEEEECCCc---HHHHHHHHHHHCCCEEEEEEeC
Confidence            48999999999965   7899999999999998877643

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=87.03  E-value=2.5  Score=32.16  Aligned_cols=47  Identities=13%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...|++..++.+|++++++.|+..  ++.-++.++..|+++..++
T Consensus        74 SsGN~g~alA~~a~~~G~~~~v~~p~~~--~~~k~~~~~~~GA~V~~~~  120 (317)
T TIGR02991        74 STGNHGRALAYAAAEEGVRATICMSELV--PQNKVDEIRRLGAEVRIVG  120 (317)
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEcCCCC--CHHHHHHHHHcCCEEEEeC
Confidence            3456999999999999999999999874  4555677788888887653

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK13243 glyoxylate reductase; Reviewed

Probab=86.98  E-value=1.5  Score=33.68  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       147 ~L~gktvgIiG~G~---IG~~vA~~l~~~G~~V~~~d~~  182 (333)
T PRK13243        147 DVYGKTIGIIGFGR---IGQAVARRAKGFGMRILYYSRT  182 (333)
T ss_pred             CCCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            48899999999854   9999999999999999988873

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.87  E-value=4.1  Score=31.20  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=36.4

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhh----CCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTL----YDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~----~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+-  |.+-+..++..    -+++|+++....
T Consensus       148 L~~~~i~l~Gk~vvViGrS~i--VG~Pla~lL~~~~~~~~AtVt~~hs~t  195 (286)
T PRK14184        148 LERYGLSPAGKKAVVVGRSNI--VGKPLALMLGAPGKFANATVTVCHSRT  195 (286)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHhCCcccCCCEEEEEeCCc
Confidence            45555 799999999999887  99999999988    789999998654

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=86.86  E-value=2.4  Score=33.27  Aligned_cols=45  Identities=13%  Similarity=0.095  Sum_probs=36.4

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||.+.|++..++++|++.+++-|+.  .++.-++.++..|+++..++
T Consensus       103 GN~g~a~A~~Aa~~G~~~~I~vP~~--~~~~k~~~i~~~GAeVi~v~  147 (376)
T TIGR01747       103 GNHGRGVAWAAQQLGQKAVVYMPKG--SAQERVENILNLGAECTITD  147 (376)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEEC
Confidence            3499999999999999999999986  34555677778888876653

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK08638 threonine dehydratase; Validated

Probab=86.74  E-value=2.3  Score=32.67  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||...|++..|+.+|++++++.|+..  ++.-++.++..|+++..+
T Consensus        84 GN~g~alA~~aa~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~  127 (333)
T PRK08638         84 GNHAQGVALSCALLGIDGKVVMPKGA--PKSKVAATCGYGAEVVLH  127 (333)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEeCCCC--cHHHHHHHHHcCCEEEEE
Confidence            34999999999999999999999874  455567788888888654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.72  E-value=4.3  Score=32.09  Aligned_cols=55  Identities=20%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC-CC--CHHHHHHHHhcCCeEEE
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL-GM--PESIQEFVASKGKQQEV   96 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~-~~--~~~~~~~a~~~g~~~~~   96 (99)
                      .+.+|+++|.++   ++-.++..+.++|. +|+++..... .+  .+...+.+++.|+++..
T Consensus       272 ~g~~VvViGgG~---~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~  330 (457)
T PRK11749        272 VGKRVVVIGGGN---TAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW  330 (457)
T ss_pred             CCCeEEEECCCH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence            578999999864   88888888899998 8999987432 22  34456778888877653

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=86.54  E-value=1.6  Score=34.52  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.+.++..+..||+++...-|+
T Consensus       113 ~l~gktvGIIG~G~---IG~~va~~l~a~G~~V~~~Dp~  148 (381)
T PRK00257        113 DLAERTYGVVGAGH---VGGRLVRVLRGLGWKVLVCDPP  148 (381)
T ss_pred             CcCcCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCc
Confidence            59999999999865   9999999999999999999874

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=86.53  E-value=1.8  Score=32.99  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+..+..+.-|||+|....|.
T Consensus       142 ~L~gktvGIiG~G~---IG~~vA~~~~~fgm~V~~~d~~  177 (311)
T PRK08410        142 EIKGKKWGIIGLGT---IGKRVAKIAQAFGAKVVYYSTS  177 (311)
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHhhcCCEEEEECCC
Confidence            48999999999864   9999999999999999988874

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.47  E-value=6.2  Score=30.34  Aligned_cols=43  Identities=14%  Similarity=0.168  Sum_probs=37.0

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+-  |.+-+..++..-|+.|++|+-..
T Consensus       151 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~aTVt~chs~T  194 (294)
T PRK14187        151 IKTITRNLSGSDAVVIGRSNI--VGKPMACLLLGENCTVTTVHSAT  194 (294)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--chHHHHHHHhhCCCEEEEeCCCC
Confidence            34455 799999999999887  99999999999999999998754

>PRK06721 threonine synthase; Reviewed

Probab=86.30  E-value=2.8  Score=32.36  Aligned_cols=47  Identities=19%  Similarity=0.121  Sum_probs=37.1

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...+++..++++|++++++-|++- .++.-.+.++..|+++..++
T Consensus        83 sGN~G~alA~~aa~~G~~~~vvvp~~~-~~~~k~~~~~~~GA~V~~~~  129 (352)
T PRK06721         83 TGNTSASAAAYAARLGMKCIIVIPEGK-IAHGKLAQAVAYGAEIISIE  129 (352)
T ss_pred             CcHHHHHHHHHHHHCCCcEEEEECCCC-CCHHHHHHHHHcCCEEEEEC
Confidence            445899999999999999999999864 34455566788898887653

>PRK07591 threonine synthase; Validated

Probab=86.27  E-value=3.5  Score=32.72  Aligned_cols=47  Identities=11%  Similarity=0.029  Sum_probs=37.5

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...|++..++++|++++++.|++  .++.-+..++..|+++...+
T Consensus       144 SsGN~g~alA~~aa~~Gl~~~I~vP~~--~~~~k~~~~~~~GA~Vi~v~  190 (421)
T PRK07591        144 STGNLANSVAAHAARAGLDSCVFIPAD--LEAGKIVGTLVYGPTLVAVD  190 (421)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEEC
Confidence            345699999999999999999999986  44555577788888886653

>PLN02356 phosphateglycerate kinase

Probab=86.22  E-value=2.4  Score=34.09  Aligned_cols=46  Identities=24%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||.+.|++.+|+.+|++++++.|+..  +++-.+.++..|+++...
T Consensus       111 SSGN~g~alA~~aa~~G~~~~ivvP~~~--s~~K~~~ir~~GAeVi~v  156 (423)
T PLN02356        111 SAGSTAISLATVAPAYGCKCHVVIPDDV--AIEKSQILEALGATVERV  156 (423)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEECCCC--cHHHHHHHHHcCCEEEEE
Confidence            3345899999999999999999999864  455567888899998765

>PRK05638 threonine synthase; Validated

Probab=86.17  E-value=2.3  Score=33.85  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=37.6

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||.+.|++..++++|++++++-|+.  .++.-++.++..|+++...
T Consensus       119 SsGN~g~alA~~aa~~G~~~~i~vp~~--~~~~k~~~~~~~GA~vi~v  164 (442)
T PRK05638        119 SDGNAAASVAAYSARAGKEAFVVVPRK--VDKGKLIQMIAFGAKIIRY  164 (442)
T ss_pred             CCChHHHHHHHHHHHcCCCEEEEEeCC--CCHHHHHHHHhcCcEEEEE
Confidence            345699999999999999999999986  4555567788888888654

>PRK06110 hypothetical protein; Provisional

Probab=85.91  E-value=3  Score=31.71  Aligned_cols=45  Identities=13%  Similarity=0.017  Sum_probs=36.2

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||...|++..|+++|++++++.|+..  ++.-.+..+..|+++..+
T Consensus        78 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~i~~~GA~V~~~  122 (322)
T PRK06110         78 RGNHGQSVAFAARRHGLAATIVVPHGN--SVEKNAAMRALGAELIEH  122 (322)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEEEE
Confidence            456999999999999999999999875  334446678888888655

>PRK06450 threonine synthase; Validated

Probab=85.88  E-value=2.8  Score=32.42  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=37.1

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||...|++..++.+|++.+++-|++  .++.-+++++..|+++...
T Consensus       106 GN~g~slA~~aa~~G~~~~i~vP~~--~~~~k~~~i~~~GA~vi~v  149 (338)
T PRK06450        106 GNAGASIAAYGAAAGIEVKIFVPET--ASGGKLKQIESYGAEVVRV  149 (338)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEE
Confidence            4599999999999999999999987  5666667788889888654

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=85.82  E-value=2.8  Score=33.43  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||...|++..++.+|++++++-|++  .++.-++..+..|+++..+
T Consensus       142 sGN~G~alA~~a~~~G~~~~IvvP~~--~~~~K~~~ira~GAeVv~v  186 (404)
T cd06447         142 TGNLGLSIGIMAAALGFKVTVHMSAD--AKQWKKDKLRSKGVTVVEY  186 (404)
T ss_pred             ccHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHCCCEEEEE
Confidence            34599999999999999999999987  5666667788888888665

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK08197 threonine synthase; Validated

Probab=85.82  E-value=2.8  Score=32.87  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=36.2

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||...|++..++++|++++++.|++.  ++.-+++++..|+++...
T Consensus       136 GN~g~alA~~aa~~G~~~~v~vp~~~--~~~k~~~~~~~GA~Vi~v  179 (394)
T PRK08197        136 GNAGAAWAAYAARAGIRATIFMPADA--PEITRLECALAGAELYLV  179 (394)
T ss_pred             cHHHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEE
Confidence            45999999999999999999999864  444567788888887654

>PLN03013 cysteine synthase

Probab=85.78  E-value=2.8  Score=33.79  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||...+++..++.+|.+++++-|+.  .+++-++.++..|+++...+
T Consensus       184 GN~G~ALA~~a~~~G~~~~VvvP~~--~s~~K~~~ira~GAeVi~v~  228 (429)
T PLN03013        184 GNTGIGLAFIAASRGYRLILTMPAS--MSMERRVLLKAFGAELVLTD  228 (429)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHcCCEEEEEC
Confidence            3499999999999999999999987  56777788888998887653

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.65  E-value=7.5  Score=29.73  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=36.4

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhh--CCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTL--YDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~--~G~~v~~~~P~~   76 (99)
                      .++++ +++|++++.+|..+.  |.+-+..++.+  -++.|++|.-+.
T Consensus       149 l~~~~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~~~atVtvchs~T  194 (284)
T PRK14193        149 LRRYDVELAGAHVVVIGRGVT--VGRPIGLLLTRRSENATVTLCHTGT  194 (284)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHhhccCCCEEEEeCCCC
Confidence            45555 699999999999887  99999999988  689999998654

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=85.52  E-value=2.7  Score=32.68  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      ..+++++|+++|=++   +.++++..+...|+++++..++
T Consensus        13 ~~L~gktIgIIG~Gs---mG~AlA~~L~~sG~~Vvv~~r~   49 (330)
T PRK05479         13 SLIKGKKVAIIGYGS---QGHAHALNLRDSGVDVVVGLRE   49 (330)
T ss_pred             hhhCCCEEEEEeeHH---HHHHHHHHHHHCCCEEEEEECC
Confidence            458899999999864   9999999999999998876553

>PRK06382 threonine dehydratase; Provisional

Probab=85.46  E-value=2.5  Score=33.25  Aligned_cols=44  Identities=14%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||.+.+++.+|+++|++.+++.|+..  ++.-.+.++..|+++.++
T Consensus        82 GN~g~a~A~aa~~~G~~~~ivmp~~~--~~~k~~~~~~~GA~Vv~~  125 (406)
T PRK06382         82 GNHAQGVAYAASINGIDAKIVMPEYT--IPQKVNAVEAYGAHVILT  125 (406)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHcCCEEEEE
Confidence            45899999999999999999999875  344456678888888654

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=85.38  E-value=2  Score=34.01  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=32.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.+-++..+..|||++....|+
T Consensus       113 ~L~gktvGIIG~G~---IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        113 SLHDRTVGIVGVGN---VGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CcCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCc
Confidence            58999999999865   9999999999999999999874

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=85.32  E-value=4.2  Score=35.70  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCC--HHHHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMP--ESIQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~--~~~~~~a~~~g~~~~~   96 (99)
                      ..|++|+.||.++   ++-..+..+.++|.+|++++.... ++|  +..++.+.+.|+++..
T Consensus       445 ~~Gk~VvVIGGG~---tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~  503 (944)
T PRK12779        445 VKGKEVFVIGGGN---TAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV  503 (944)
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence            3689999999975   999999999999999999986542 233  2334556677877644

>PRK14030 glutamate dehydrogenase; Provisional

Probab=85.30  E-value=3.2  Score=33.67  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=37.2

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEE--------ECCCCCCCC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNY--------VSPPNLGMP   80 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~--------~~P~~~~~~   80 (99)
                      ++.| +++|+||++-|-+|   |....+..+..+|++++.        ..|.|+.++
T Consensus       220 ~~~g~~l~g~~vaIQGfGn---VG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~  273 (445)
T PRK14030        220 ETKGIDIKGKTVAISGFGN---VAWGAATKATELGAKVVTISGPDGYIYDPDGISGE  273 (445)
T ss_pred             HHcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHH
Confidence            4445 59999999999754   999999999999999999        578887653

>COG2044 Predicted peroxiredoxins [General function prediction only]

Probab=85.21  E-value=3.2  Score=28.01  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             ECCCCCchhHHHHHH--HHhhCCCEEEEEC-----------------CCCCCCCHHHHHHHHhcCCeEEEEeC
Q psy4411          46 VGDLKNGRTVHSLAR--LLTLYDVKLNYVS-----------------PPNLGMPESIQEFVASKGKQQEVYER   99 (99)
Q Consensus        46 vGd~~n~rv~~Sl~~--~~~~~G~~v~~~~-----------------P~~~~~~~~~~~~a~~~g~~~~~~~~   99 (99)
                      .|+.+.-|..+.|..  +++.+|.+++++-                 ++++.+..++.++|.++|+++-.|+.
T Consensus        11 ~G~~~~~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~   83 (120)
T COG2044          11 SGPNNPERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQ   83 (120)
T ss_pred             cCCCCHHHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcc
Confidence            377665566666554  4556787877654                 46777888999999999999887763

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=85.09  E-value=2.9  Score=33.06  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=35.6

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||.+.|++..|+++|++++++-|+..  ++.-++.++..|+.+..+
T Consensus       122 GN~g~alA~~aa~~Gi~~~IvvP~~~--~~~K~~~ir~~GAeVi~~  165 (396)
T TIGR03528       122 GNHGRGVAWAANQLGQKSVVYMPKGS--AQIRLENIRAEGAECTIT  165 (396)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEEeCCC--cHHHHHHHHhcCCEEEEE
Confidence            35999999999999999999999864  455556677888877655

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.89  E-value=5.5  Score=31.85  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      .+|+|++|+.+-...-  -.--++..+...|++|.+++-.-+..++++.+.+.+.|+.+
T Consensus        28 ~pl~G~~i~~~~hl~~--~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v   84 (406)
T TIGR00936        28 KPLKGARIAACLHVTV--ETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPV   84 (406)
T ss_pred             CCCCCCEEEEEEechH--HHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceE
Confidence            5699999999987643  33456677788899999997766888899988888888765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=84.88  E-value=3.2  Score=32.72  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||...|++..|+++|++++++-|+..  ++.-++.++..|+++..+
T Consensus       123 SsGN~g~alA~~a~~~G~~~~Ivvp~~~--~~~k~~~i~~~GA~Vi~v  168 (399)
T PRK08206        123 TDGNHGRGVAWAAQQLGQKAVIYMPKGS--SEERVDAIRALGAECIIT  168 (399)
T ss_pred             CCcHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEe
Confidence            3445999999999999999999999874  344455677778877654

>PRK08526 threonine dehydratase; Provisional

Probab=84.86  E-value=3.2  Score=32.89  Aligned_cols=46  Identities=15%  Similarity=0.115  Sum_probs=36.4

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||.+++++..|+++|++.+++-|+..  |+.-++..+..|+++..+
T Consensus        75 SaGNhg~avA~aa~~~Gi~~~IvmP~~~--p~~k~~~~r~~GA~Vv~~  120 (403)
T PRK08526         75 SAGNHAQGVAISAKKFGIKAVIVMPEAT--PLLKVSGTKALGAEVILK  120 (403)
T ss_pred             CccHHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHhCCCEEEEE
Confidence            3445999999999999999999999875  444446678888887654

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=84.82  E-value=4.5  Score=29.39  Aligned_cols=36  Identities=28%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+++|++|++.|=++   |.+.++..+...|..++.++-
T Consensus        19 ~~l~g~~vaIqGfGn---VG~~~a~~L~~~G~~vV~vsD   54 (217)
T cd05211          19 DSLEGLTVAVQGLGN---VGWGLAKKLAEEGGKVLAVSD   54 (217)
T ss_pred             CCcCCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEEc
Confidence            579999999999654   999999999999988777763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK02991 D-serine dehydratase; Provisional

Probab=84.73  E-value=3.4  Score=33.28  Aligned_cols=44  Identities=14%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||...|++.+++.+|++.+++-|++  .++.-++.++..|+++..+
T Consensus       166 GN~G~alA~aA~~~G~~~tIvvP~~--a~~~K~~~ir~~GAeVi~~  209 (441)
T PRK02991        166 GNLGLSIGIMSAALGFKVTVHMSAD--ARQWKKDKLRSHGVTVVEY  209 (441)
T ss_pred             cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEE
Confidence            3489999999999999999999976  5666667788888888665

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=84.64  E-value=4.3  Score=34.36  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCCCC-CCCH--HHHHHHHhcCCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPPNL-GMPE--SIQEFVASKGKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~~~-~~~~--~~~~~a~~~g~~~~   95 (99)
                      ..|++|+++|.++   ++-..+..+.++|.+ |+++..... +++.  ..++.+++.|+++.
T Consensus       568 ~~gk~VvVIGgG~---~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~  626 (752)
T PRK12778        568 KFGKKVAVVGGGN---TAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFL  626 (752)
T ss_pred             cCCCcEEEECCcH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEE
Confidence            4578999999975   888899999999987 999987542 2332  33456777887764

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=84.64  E-value=5.5  Score=30.42  Aligned_cols=48  Identities=8%  Similarity=0.014  Sum_probs=34.6

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCC------CHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGM------PESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~------~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||.++|++..|+++|++++++.|+....      ++.-+...+..|+++...
T Consensus        75 s~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v  128 (337)
T TIGR01274        75 IQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD  128 (337)
T ss_pred             CcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence            345699999999999999999999875421      123334567778877654

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>PRK08813 threonine dehydratase; Provisional

Probab=84.36  E-value=3.7  Score=32.09  Aligned_cols=45  Identities=20%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||...|++..|+.+|++.+++-|+.  .++.-++.++..|+.+..+
T Consensus        89 sGN~G~alA~aa~~~Gi~~~IvvP~~--~~~~K~~~i~~~GAeVv~~  133 (349)
T PRK08813         89 AGNHAQGVAWSAYRLGVQAITVMPHG--APQTKIAGVAHWGATVRQH  133 (349)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEE
Confidence            34599999999999999999999986  4556667778888877654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.36  E-value=5  Score=31.81  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      .+++++++++|-+.   +..+.+..+...|.+|+++-....+..+...+.+++.|+.+.
T Consensus        13 ~~~~~~v~viG~G~---~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~   68 (480)
T PRK01438         13 DWQGLRVVVAGLGV---SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR   68 (480)
T ss_pred             CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence            47789999999865   777888999999999988754332233344566777787764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.27  E-value=2.3  Score=32.73  Aligned_cols=36  Identities=11%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=++   +.++++..+..+|++|....|.
T Consensus       143 ~l~g~~VgIIG~G~---IG~~vA~~L~~~G~~V~~~d~~  178 (330)
T PRK12480        143 PVKNMTVAIIGTGR---IGAATAKIYAGFGATITAYDAY  178 (330)
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEeCC
Confidence            47889999999865   9999999999999999988863

>PRK06436 glycerate dehydrogenase; Provisional

Probab=84.26  E-value=2.5  Score=32.23  Aligned_cols=36  Identities=8%  Similarity=0.087  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=++   +.+.++..+.-||+++....|.
T Consensus       119 ~L~gktvgIiG~G~---IG~~vA~~l~afG~~V~~~~r~  154 (303)
T PRK06436        119 LLYNKSLGILGYGG---IGRRVALLAKAFGMNIYAYTRS  154 (303)
T ss_pred             CCCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            58999999999865   8899999999999999998873

>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit

Probab=84.25  E-value=6.8  Score=30.87  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=31.6

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      ..+.|+++++.||..   .+.|+...+..+||+++.++.+
T Consensus       270 ~~l~Gkrv~i~gd~~---~~~~l~~~L~elGm~~v~~~t~  306 (407)
T TIGR01279       270 QLLRGKKIFFFGDNL---LELPLARFLKRCGMEVVECGTP  306 (407)
T ss_pred             HhcCCCEEEEECCch---HHHHHHHHHHHCCCEEEEecCC
Confidence            348999999999965   7889999999999999888763

This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.

>PLN02629 powdery mildew resistance 5

Probab=84.12  E-value=0.98  Score=35.98  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             hcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411          35 MGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus        35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +..++|++++||||.-+-|-..||+.+++.
T Consensus       115 Le~~RgKrl~FVGDSL~RNQ~eSLvClL~~  144 (387)
T PLN02629        115 LLKMKGKTVMFVGDSLGRNQWESLICLISS  144 (387)
T ss_pred             HHHhcCCeEEEeccccchhHHHHHHHHhhc
Confidence            345899999999997665789999999877

>PRK06260 threonine synthase; Validated

Probab=83.99  E-value=3.5  Score=32.34  Aligned_cols=47  Identities=17%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||.+.|++..++++|++++++.|++. .++.-+.+++..|+++...
T Consensus       122 SsGN~g~alA~~aa~~G~~~~i~vP~~~-~~~~k~~~~~~~GA~vi~v  168 (397)
T PRK06260        122 STGNTSASLAAYAARAGLKCYVLLPAGK-VALGKLAQALLHGAKVLEV  168 (397)
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEEEeCCC-ccHHHHHHHHhcCCEEEEE
Confidence            4456999999999999999999999873 3444445566778877654

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=83.70  E-value=6.6  Score=29.95  Aligned_cols=49  Identities=8%  Similarity=-0.008  Sum_probs=33.1

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCC------CHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGM------PESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~------~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||.++|++.+|+++|++++++-|+....      .+.-+...+..|+++..++
T Consensus        76 s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~  130 (337)
T PRK12390         76 VQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVP  130 (337)
T ss_pred             CccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeC
Confidence            445699999999999999999996543211      0112234566788877653

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=83.66  E-value=3.1  Score=30.29  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV   72 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~   72 (99)
                      +++|++++.+|.++-  |.+-++.++..-|+.|++|
T Consensus        59 ~l~GK~vvVIGrS~i--VGkPla~lL~~~~AtVti~   92 (197)
T cd01079          59 RLYGKTITIINRSEV--VGRPLAALLANDGARVYSV   92 (197)
T ss_pred             CCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEE
Confidence            699999999999887  9999999999999999999

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=83.42  E-value=11  Score=26.47  Aligned_cols=37  Identities=11%  Similarity=0.030  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      +++|+++.+.|-...  +...++..++.-|.+|++++..
T Consensus         2 ~~~~k~vlItGas~g--IG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTG--LGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEcCc
Confidence            378899999998654  9999999999999999988753

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=83.38  E-value=7  Score=32.54  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=40.3

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCC---CCCCHHHHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPN---LGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~---~~~~~~~~~~a~~~g~~~~~   96 (99)
                      ..|++|+++|.++   ++-..+..+.++|. +|+++....   +...+..++.+++.|+++..
T Consensus       466 ~~gk~VvVIGgG~---~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~  525 (654)
T PRK12769        466 TAGLNVVVLGGGD---TAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEF  525 (654)
T ss_pred             CCCCeEEEECCcH---HHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEe
Confidence            4678999999754   88888888888996 688876432   32345566778888887653

>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional

Probab=83.09  E-value=7.6  Score=30.76  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P   74 (99)
                      ..+.|+++++.||..   .+.|++..+.. +||+++.++.
T Consensus       286 ~~l~Gkrvai~g~~~---~~~~la~~L~eelGm~~v~v~t  322 (427)
T PRK02842        286 ELLRGKRVFFLPDSQ---LEIPLARFLSRECGMELVEVGT  322 (427)
T ss_pred             hhcCCcEEEEECCch---hHHHHHHHHHHhCCCEEEEeCC
Confidence            348999999999865   78899999999 9999998876

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.00  E-value=4.8  Score=31.49  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=39.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      ++++++++++|-+.   +..+.+..++..|.+|+++.+...+.-++..+++.+.|.++
T Consensus         2 ~~~~k~v~iiG~g~---~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~   56 (450)
T PRK14106          2 ELKGKKVLVVGAGV---SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIEL   56 (450)
T ss_pred             CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEE
Confidence            36789999999654   77899999999999999998854322233334455556554

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=82.89  E-value=3.9  Score=32.77  Aligned_cols=46  Identities=11%  Similarity=0.044  Sum_probs=36.2

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||...|++.+|+++|++++++-|+. +...+.-....+..|+++..+
T Consensus       136 GN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~  182 (427)
T PRK12391        136 GQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPS  182 (427)
T ss_pred             hHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEE
Confidence            3489999999999999999999963 444555556778889888765

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=82.83  E-value=4  Score=32.58  Aligned_cols=45  Identities=7%  Similarity=-0.057  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEEEE
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      |...|++.+|+++|++++++-|+. +...+.-....+..|+++..+
T Consensus       128 N~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~  173 (419)
T TIGR01415       128 QWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPS  173 (419)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEE
Confidence            489999999999999999999974 333444456678888888655

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.81  E-value=5.5  Score=30.43  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++.+|-.+-  |.+-++.++..-|+.|++|.-..
T Consensus       149 L~~y~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~ATVt~chs~T  192 (282)
T PRK14180        149 LREYGIKTEGAYAVVVGASNV--VGKPVSQLLLNAKATVTTCHRFT  192 (282)
T ss_pred             HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEEcCCC
Confidence            45555 799999999999887  99999999998899999998644

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.74  E-value=9.9  Score=28.22  Aligned_cols=58  Identities=9%  Similarity=0.015  Sum_probs=40.1

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      .+++|+++.+.|-...  +.+.++..+++-|.++++..-..-...+++.+.+++.|.++.
T Consensus         8 ~~l~~k~~lVTGas~g--IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~   65 (306)
T PRK07792          8 TDLSGKVAVVTGAAAG--LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAV   65 (306)
T ss_pred             cCCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEE
Confidence            4688999999998765  999999999999999988754221122334444555555443

>PLN02928 oxidoreductase family protein

Probab=82.72  E-value=3.1  Score=32.24  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+..+..+.-|||+|....|.
T Consensus       156 ~l~gktvGIiG~G~---IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        156 TLFGKTVFILGYGA---IGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHHhhCCCEEEEECCC
Confidence            48999999999864   9999999999999999998763

>PRK06487 glycerate dehydrogenase; Provisional

Probab=82.67  E-value=3.2  Score=31.68  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+..+..+.-|||+|....|.
T Consensus       145 ~l~gktvgIiG~G~---IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        145 ELEGKTLGLLGHGE---LGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHhhCCCEEEEECCC
Confidence            48899999999864   9999999999999999988764

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.53  E-value=3.3  Score=32.84  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+..+..+..|||+|....|.
T Consensus       148 ~L~gktvGIiG~G~---IG~~vA~~~~~fGm~V~~~d~~  183 (409)
T PRK11790        148 EVRGKTLGIVGYGH---IGTQLSVLAESLGMRVYFYDIE  183 (409)
T ss_pred             cCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            48999999999864   9999999999999999998874

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=82.46  E-value=5  Score=31.83  Aligned_cols=44  Identities=16%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .++++ +++|++++.||..+-  |.+-+..++.+-|+.|++|+-+.-
T Consensus       222 L~~y~i~l~GK~vvVIGRS~i--VGkPLa~LL~~~~ATVTicHs~T~  266 (364)
T PLN02616        222 LHRYNVEIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSRTK  266 (364)
T ss_pred             HHHhCCCCCCCEEEEECCCcc--ccHHHHHHHHHCCCeEEEeCCCCC
Confidence            34455 699999999999887  999999999999999999987654

>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase

Probab=82.34  E-value=3.1  Score=32.58  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      ..+.|+++++.||..   .+.|+...+..+||+++.++.
T Consensus       272 ~~l~Gkrv~i~g~~~---~~~~la~~L~elGm~vv~~~t  307 (396)
T cd01979         272 DLLRGKSIFFMGDNL---LEIPLARFLTRCGMIVVEVGT  307 (396)
T ss_pred             HhhcCCEEEEECCch---HHHHHHHHHHHCCCEEEeeCC
Confidence            458999999999964   689999999999999988865

Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.

>PRK09224 threonine dehydratase; Reviewed

Probab=82.34  E-value=4.8  Score=32.82  Aligned_cols=44  Identities=18%  Similarity=0.189  Sum_probs=35.2

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ||.+++++..|+++|++.+++-|+.  .|+.-++.++..|+++..+
T Consensus        77 GNha~avA~aa~~lGi~~~IvmP~~--tp~~K~~~~r~~GA~Vi~~  120 (504)
T PRK09224         77 GNHAQGVALSAARLGIKAVIVMPVT--TPDIKVDAVRAFGGEVVLH  120 (504)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEE
Confidence            4599999999999999999999975  3444456778888887654

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=82.17  E-value=1.6  Score=30.36  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             hhccCEEEEccCCchhH---------------------HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          15 SGYADVIVLRHPEPGAV---------------------KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        15 s~y~D~iv~R~~~~~~~---------------------~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +.-+|+|+.|...-..+                     ..... -.+.+|+++|-.+   ....+..+...||+++....
T Consensus        32 ~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~-~~~~~Iavv~~~~---~~~~~~~~~~ll~~~i~~~~  107 (176)
T PF06506_consen   32 SEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAK-KYGPKIAVVGYPN---IIPGLESIEELLGVDIKIYP  107 (176)
T ss_dssp             TTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCC-CCTSEEEEEEESS----SCCHHHHHHHHT-EEEEEE
T ss_pred             hcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHH-hcCCcEEEEeccc---ccHHHHHHHHHhCCceEEEE
Confidence            34489999997754444                     12222 4458999999755   33556666677788887776


Q ss_pred             CCCCCCCHHHHHHHHhcCCeE
Q psy4411          74 PPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        74 P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      -...+=-+..++++++.|.+.
T Consensus       108 ~~~~~e~~~~i~~~~~~G~~v  128 (176)
T PF06506_consen  108 YDSEEEIEAAIKQAKAEGVDV  128 (176)
T ss_dssp             ESSHHHHHHHHHHHHHTT--E
T ss_pred             ECCHHHHHHHHHHHHHcCCcE
Confidence            544321123455666666554

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>TIGR00260 thrC threonine synthase

Probab=82.16  E-value=7.2  Score=29.40  Aligned_cols=47  Identities=13%  Similarity=0.034  Sum_probs=36.2

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...+++..++++|++++++.|++. .++.-+...+..|+++..++
T Consensus        79 sGN~g~a~A~~a~~~g~~~~v~~p~~~-~s~~k~~~~~~~GA~Vi~~~  125 (328)
T TIGR00260        79 TGNTGAAAAAYAGKAGVKVVILYPAGK-ISLGKLAQALGYNAEVVAID  125 (328)
T ss_pred             CcHHHHHHHHHhccCCCcEEEEECCCC-CCHHHHHHHHhcCcEEEEec
Confidence            445999999999999999999999873 23555566677888876553

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>PRK08628 short chain dehydrogenase; Provisional

Probab=82.12  E-value=10  Score=26.78  Aligned_cols=37  Identities=5%  Similarity=-0.007  Sum_probs=31.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      +++|+++.+.|-...  +...++..+++.|.++++++-+
T Consensus         4 ~l~~~~ilItGasgg--iG~~la~~l~~~G~~v~~~~r~   40 (258)
T PRK08628          4 NLKDKVVIVTGGASG--IGAAISLRLAEEGAIPVIFGRS   40 (258)
T ss_pred             CcCCCEEEEeCCCCh--HHHHHHHHHHHcCCcEEEEcCC
Confidence            578899999997554  9999999999999998887753

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=81.60  E-value=4.9  Score=32.82  Aligned_cols=45  Identities=18%  Similarity=0.159  Sum_probs=35.5

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||.+++++.+|+++|++.+++-|+..  |+.-++.++..|+++..+
T Consensus        73 aGNha~~vA~aa~~~Gi~~~IvmP~~t--p~~Kv~~~r~~GA~Vvl~  117 (499)
T TIGR01124        73 AGNHAQGVAFSAARLGLKALIVMPETT--PDIKVDAVRGFGGEVVLH  117 (499)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEe
Confidence            345999999999999999999999763  344456677888887654

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PLN02569 threonine synthase

Probab=81.54  E-value=6.2  Score=32.17  Aligned_cols=47  Identities=11%  Similarity=0.022  Sum_probs=36.8

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||...|++..++.+|++++++.|++. +++.-+.+++..|+.+...
T Consensus       194 SSGN~GaAlAayaa~~Gl~~~I~vP~~~-~~~~k~~qi~a~GA~Vi~v  240 (484)
T PLN02569        194 STGDTSAALSAYCAAAGIPSIVFLPADK-ISIAQLVQPIANGALVLSI  240 (484)
T ss_pred             CCcHHHHHHHHHHHhcCCeEEEEEcCCC-CCHHHHHHHHhcCCEEEEE
Confidence            3455899999999999999999999864 4545556677778777554

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=81.10  E-value=4.6  Score=31.66  Aligned_cols=46  Identities=7%  Similarity=-0.172  Sum_probs=34.5

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCC-HHHHHHHHhcCCeEEEEe
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMP-ESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~~~a~~~g~~~~~~~   98 (99)
                      |...+++..|+++|++++++-|+.-.+. +.-+...+..|+++..++
T Consensus       109 N~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~  155 (385)
T TIGR00263       109 QHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT  155 (385)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence            3899999999999999999999752121 123456788898887653

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=81.01  E-value=3.8  Score=31.27  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+..+..+.-|||+|....|.
T Consensus       144 ~l~gktvgIiG~G~---IG~~va~~l~~fg~~V~~~~~~  179 (314)
T PRK06932        144 DVRGSTLGVFGKGC---LGTEVGRLAQALGMKVLYAEHK  179 (314)
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHhcCCCEEEEECCC
Confidence            48899999999864   8999999999999999887763

>PRK08589 short chain dehydrogenase; Validated

Probab=80.95  E-value=9.9  Score=27.46  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=38.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      +.++++++.+.|-...  +.+.++..++.-|.++++++..  +..++..+.+++.+.++
T Consensus         2 ~~l~~k~vlItGas~g--IG~aia~~l~~~G~~vi~~~r~--~~~~~~~~~~~~~~~~~   56 (272)
T PRK08589          2 KRLENKVAVITGASTG--IGQASAIALAQEGAYVLAVDIA--EAVSETVDKIKSNGGKA   56 (272)
T ss_pred             CCCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeCc--HHHHHHHHHHHhcCCeE
Confidence            3577889999998664  9999999999999999988754  22233334444444443

>PLN02477 glutamate dehydrogenase

Probab=80.90  E-value=6.6  Score=31.45  Aligned_cols=38  Identities=26%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +++| +++|++|++.|-++   |.+.++..+...|++++-++
T Consensus       198 ~~~g~~l~g~~VaIqGfGn---VG~~~A~~L~e~GakVVaVs  236 (410)
T PLN02477        198 AEHGKSIAGQTFVIQGFGN---VGSWAAQLIHEKGGKIVAVS  236 (410)
T ss_pred             HHcCCCccCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEE
Confidence            4455 59999999999644   99999999999999998554

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=80.85  E-value=9.1  Score=32.02  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC-CCC--HHHHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL-GMP--ESIQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~-~~~--~~~~~~a~~~g~~~~~   96 (99)
                      ..|++|+++|.++   ++-.++..+.++|. +|+++.+... .++  +..++++.+.|+++..
T Consensus       321 ~~gk~VvVIGgG~---~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~  380 (652)
T PRK12814        321 HPGKKVVVIGGGN---TAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE  380 (652)
T ss_pred             cCCCeEEEECCCH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence            4679999999875   88888888899996 6999887543 232  3344556667777643

>PLN03139 formate dehydrogenase; Provisional

Probab=80.82  E-value=3.3  Score=32.87  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++|++|+++|=   ||+.+..+..+..||+++....|.
T Consensus       196 ~L~gktVGIVG~---G~IG~~vA~~L~afG~~V~~~d~~  231 (386)
T PLN03139        196 DLEGKTVGTVGA---GRIGRLLLQRLKPFNCNLLYHDRL  231 (386)
T ss_pred             CCCCCEEEEEee---cHHHHHHHHHHHHCCCEEEEECCC
Confidence            489999999995   359999999999999999887663

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.73  E-value=3.7  Score=33.52  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+.|+||+++|=++   +.++++..+..|||++....|
T Consensus       135 ~l~gktvgIiG~G~---IG~~vA~~l~~fG~~V~~~d~  169 (525)
T TIGR01327       135 ELYGKTLGVIGLGR---IGSIVAKRAKAFGMKVLAYDP  169 (525)
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECC
Confidence            48899999999865   999999999999999999887

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=80.73  E-value=9  Score=30.50  Aligned_cols=56  Identities=9%  Similarity=0.020  Sum_probs=37.8

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCCCCCHH-------------HHHHHHhcCCeEEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNLGMPES-------------IQEFVASKGKQQEV   96 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~~~~~-------------~~~~a~~~g~~~~~   96 (99)
                      ..+++|++||.++   ++-.++..+.+.|. +|+...+......+.             .++.+++.|+.+..
T Consensus       279 ~~gk~VvVIGgG~---~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~  348 (471)
T PRK12810        279 AKGKHVVVIGGGD---TGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF  348 (471)
T ss_pred             CCCCEEEEECCcH---HHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe
Confidence            4578999999975   88888877788886 788766543322221             35667777766643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=80.69  E-value=13  Score=26.43  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=31.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++++++.+.|-...  +...++..++..|.++.+++-.
T Consensus        12 ~l~~k~vlItGas~g--IG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         12 SLDGKVAIVTGGNTG--LGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             cCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence            578899999998665  9999999999999998887653

>PRK06701 short chain dehydrogenase; Provisional

Probab=80.52  E-value=13  Score=27.43  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.++++++.+.|....  +..+++..+++.|.++.+++-.
T Consensus        41 ~~~~~~k~iLItGasgg--IG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         41 SGKLKGKVALITGGDSG--IGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             ccCCCCCEEEEeCCCcH--HHHHHHHHHHHCCCEEEEEeCC
Confidence            35688899999997665  9999999999999999888654

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=80.52  E-value=4.5  Score=30.81  Aligned_cols=48  Identities=8%  Similarity=-0.051  Sum_probs=35.2

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCC------HHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMP------ESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~------~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...+++.+|+.+|.+++++.|+.....      +.-...++..|+++....
T Consensus        74 ~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~  127 (331)
T PRK03910         74 QSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVP  127 (331)
T ss_pred             hhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeC
Confidence            346999999999999999999999765321      122345677888876553

>PRK09414 glutamate dehydrogenase; Provisional

Probab=80.38  E-value=5.8  Score=32.14  Aligned_cols=38  Identities=13%  Similarity=0.100  Sum_probs=32.6

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      ++++ +++|+||++.|=++   |...++..+..+|++|+.++
T Consensus       224 ~~~~~~l~g~rVaIqGfGn---VG~~~A~~L~~~GakVVavs  262 (445)
T PRK09414        224 KARGDSFEGKRVVVSGSGN---VAIYAIEKAQQLGAKVVTCS  262 (445)
T ss_pred             HhcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence            3444 59999999999854   99999999999999999885

>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=80.07  E-value=6.4  Score=26.79  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM   79 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~   79 (99)
                      ..++|++++.+=.-+.-|+-.|+-.++.++|.+++...|....+
T Consensus        35 ~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~   78 (142)
T PF02729_consen   35 QLLKGKTVALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSL   78 (142)
T ss_dssp             TTTTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSST
T ss_pred             ccCCCCEEEEEecCCCchhhhhHHHhhhcceeEEEEECcccccC
Confidence            35999999988766666899999999999999999999987766

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.01  E-value=3.3  Score=31.37  Aligned_cols=42  Identities=12%  Similarity=0.114  Sum_probs=35.4

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++++ .++|++++.+|-+.-  +.+.++.++...|++|+++.-+
T Consensus       150 L~~~~i~l~Gk~vvViG~gg~--vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        150 LKAYNIELAGKHAVVVGRSAI--LGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             HHHcCCCCCCCEEEEECCcHH--HHHHHHHHHHhCCCEEEEEeCC
Confidence            34454 699999999999875  9999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1ml4_A	308	The Pala-Liganded Aspartate Transcarbamoylase Catal		6e-17
2rgw_A	306	Catalytic Subunit Of M. Jannaschii Aspartate Transc		9e-17
2be7_A	326	Crystal Structure Of The Unliganded (T-State) Aspar		2e-14
1ezz_A	310	Crystal Structure Of E. Coli Aspartate Transcarbamo		2e-13
1sku_A	310	E. Coli Aspartate Transcarbamylase 240's Loop Mutan		2e-13
1raa_A	310	Crystal Structure Of Ctp-Ligated T State Aspartate		2e-13
3mpu_A	310	Crystal Structure Of The C47aA241C DISULFIDE-Linked		2e-13
1d09_A	310	Aspartate Transcarbamoylase Complexed With N-Phosph		2e-13
1tth_A	310	Aspartate Transcarbamoylase Catalytic Chain Mutant		2e-13
2a0f_A	310	Structure Of D236a Mutant E. Coli Aspartate Transca		2e-13
1ekx_A	311	The Isolated, Unregulated Catalytic Trimer Of Aspar		2e-13
1xjw_A	310	The Structure Of E. Coli Aspartate Transcarbamoylas		2e-13
1at1_A	310	Crystal Structures Of Phosphonoacetamide Ligated T		3e-13
1acm_A	310	Arginine 54 In The Active Site Of Escherichia Coli		3e-13
4e2f_I	310	Crystal Structure Of E. Coli Aspartate Transcarbamo		6e-13
9atc_A	310	Atcase Y165f Mutant Length = 310		8e-13
2atc_A	305	Crystal And Molecular Structures Of Native And Ctp-		1e-12
1i5o_A	310	Crystal Structure Of Mutant R105a Of E. Coli Aspart		1e-12
3lxm_A	335	2.00 Angstrom Resolution Crystal Structure Of A Cat		1e-11
1pg5_A	299	Crystal Structure Of The Unligated (t-state) Aspart		2e-07
2be9_A	300	Crystal Structure Of The Ctp-Liganded (T-State) Asp		2e-07
3d6n_B	291	Crystal Structure Of Aquifex Dihydroorotase Activat		3e-04

>pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic Subunit From Pyrococcus Abyssi Length = 308

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 32/119 (26%)
Query: 5   SNLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VK 32
            +L DT+  +  Y DVIV+RHP+ GA                                +K
Sbjct: 88  ESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIK 147
Query: 33  EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
           +E GR++GL I ++GDLK GRTVHSLA  LT YDV+L  +SP  L MP  I E +  KG
Sbjct: 148 KEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG 206

>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate Transcarbamoylase Length = 306

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 35/127 (27%)
Query: 6   NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
           +LIDT+ V+SGYAD+IVLRHP  GA +                                 
Sbjct: 85  SLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMR 144
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
           E+GR++G+ I  VGDLK GRTVHSL   L+L++ V++ +VSP  L +P+ I E +  K K
Sbjct: 145 EIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDL--KAK 202
Query: 93  QQEVYER 99
             + YE+
Sbjct: 203 NIKFYEK 209

>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate Transcarbamoylase Of The Psychrophilic Bacterium Moritella Profunda Length = 326

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 33/110 (30%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
           L D+++V+S YAD  V+RHP+ GA +                                E 
Sbjct: 105 LADSISVISSYADAFVMRHPQEGAARLASEFSNVPVINGGDGSNQHPTQTLLDLFSIYET 164
Query: 35  MGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESI 83
            GR++ L I  VGDLK GRTVHSLA+ L  +D  K ++++P  L MPE I
Sbjct: 165 QGRLDNLNIAFVGDLKYGRTVHSLAQALAKFDGCKFHFIAPDALAMPEYI 214

>pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase P268a Mutant In The T-State Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant (K244n) Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate Transcarbamoylase At 2.5 Angstroms Resolution: Implications For Atcase Mutants And The Mechanism Of Negative Cooperativity Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E. Coli Aspartate Transcarbamoylase Holoenzyme Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With N-Phosphonacetyl-L- Aspartate (Pala) Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 +++
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MPE I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206

>pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate) (Pala) Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate Transcarbamoylase In Presence Of Phosphonoacetamide At 2.90 A Resolution Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate Transcarbamoylase Complexed With Bisubstrate Analog Pala (N-(Phosphonacetyl)-L-Aspartate) Length = 311

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 89  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 148
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 149 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 207

>pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a Mutant In The R-State Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTATLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And Phosphonoacetamide And Malonate Ligated R States Of Aspartate Carbamoyltransferase At 2.8-Angstroms Resolution And Neutral PH Length = 310

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 +++
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MPE I + +  KG
Sbjct: 148 TEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206

>pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli Aspartate Transcarbamoylase Is Critical For Catalysis: A Site-Specific Mutagenesis, Nmr And X-Ray Crystallography Study Length = 310

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 +++
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MPE I + +  KG
Sbjct: 148 TEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206

>pdb|4E2F|I Chain I, Crystal Structure Of E. Coli Aspartate Transcarbamoylase K164eE239K Mutant In An Intermediate State Length = 310

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDL+ GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLEYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|9ATC|A Chain A, Atcase Y165f Mutant Length = 310

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKFGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And Ctp-Liganded Aspartate Carbamoyltransferase From Escherichia Coli Length = 305

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L +T++V+S Y D IV+RHP+ GA                                 +++
Sbjct: 88  LANTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR+N L + MVGDLK GRTVHSL + L  +D  +  +++P  L MPE I + +  KG
Sbjct: 148 TEGRLNNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206

>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate Transcarbamoylase Length = 310

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 34/119 (28%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+ HP+ GA                                 ++E
Sbjct: 88  LADTISVISTYVDAIVMAHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206

>pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From Yersinia Pestis Co92 Length = 335

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 34/126 (26%)
Query: 7   LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
           L DT++V+S Y D IV+RHP+ GA                                 ++E
Sbjct: 113 LADTMSVISTYVDAIVMRHPQEGASRLAAQFSGNVPIVNAGDGANQHPTQTLLDLFTIQE 172
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
             GR++ + I MVGDLK GRTVHSL + L  ++     +++P  L MP  I + +  K  
Sbjct: 173 TQGRLDNINIAMVGDLKYGRTVHSLTQALAKFNGNHFFFIAPDALAMPAYILQMLEEKEI 232
Query: 93  QQEVYE 98
           +  ++E
Sbjct: 233 EYSLHE 238

>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate Transcarbamoylase From The Extremely Thermophilic Archaeon Sulfolobus Acidocaldarius Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 32/104 (30%)
Query: 6   NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
           NL DT+ +L+ Y+D IV+RH   GA                                + +
Sbjct: 83  NLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINK 142
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
               ++GL   ++GDLK  RTV+SL R+LT +  KL Y+  P L
Sbjct: 143 HFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQL 186

>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate Transcarbamoylase From The Extremely Thermophilic Archaeon Sulfolobus Acidocaldarius Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 32/104 (30%)
Query: 6   NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
           NL DT+ +L+ Y+D IV+RH   GA                                + +
Sbjct: 84  NLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINK 143
Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
               ++GL   ++GDLK  RTV+SL R+LT +  KL Y+  P L
Sbjct: 144 HFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQL 187

>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 291

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 24  RHPEPG-----AVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG 78
           +HP  G      +KE  G V  L +  VGD+K+ R   S A LL ++  K+    P  L 
Sbjct: 125 QHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTL- 183
Query: 79  MPESIQEF 86
           +P  ++ F
Sbjct: 184 IPRDVEVF 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	5e-38
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	4e-37
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	7e-37
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	2e-32
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	2e-10
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	3e-10

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Length = 308

 Score =  128 bits (323), Expect = 5e-38
 Identities = 47/125 (37%), Positives = 60/125 (48%), Gaps = 32/125 (25%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
           L DT+  +  Y DVIV+RHP+ GA                                 K+E
Sbjct: 90  LRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKE 149

Query: 35  MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
            GR++GL I ++GDLK GRTVHSLA  LT YDV+L  +SP  L MP  I E +  KG + 
Sbjct: 150 FGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKV 209

Query: 95  EVYER 99
                
Sbjct: 210 VETTT 214

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Length = 310

 Score =  125 bits (317), Expect = 4e-37
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 34/127 (26%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAV---------------------------------KE 33
           L DT++V+S Y D IV+RHP+ GA                                  +E
Sbjct: 88  LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
             GR++ L + MVGDLK GRTVHSL + L  +D  +  +++P  L MP+ I + +  KG 
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGI 207

Query: 93  QQEVYER 99
              ++  
Sbjct: 208 AWSLHSS 214

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A Length = 306

 Score =  124 bits (315), Expect = 7e-37
 Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 33/126 (26%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
           LIDT+ V+SGYAD+IVLRHP  GA                                   E
Sbjct: 86  LIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMRE 145

Query: 35  MGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQ 93
           +GR++G+ I  VGDLK GRTVHSL   L+L++ V++ +VSP  L +P+ I E + +K  +
Sbjct: 146 IGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIK 205

Query: 94  QEVYER 99
               E 
Sbjct: 206 FYEKES 211

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* Length = 299

 Score =  113 bits (285), Expect = 2e-32
 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 36/126 (28%)

Query: 7   LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
           L DT+ +L+ Y+D IV+RH   GA                                  + 
Sbjct: 84  LADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKH 143

Query: 35  MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNY-VSPPNLGMPESIQEFVASKGKQ 93
              ++GL   ++GDLK  RTV+SL R+LT +  KL Y +SP  L   + I +        
Sbjct: 144 FNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILD---ELNYP 200

Query: 94  QEVYER 99
            +  E 
Sbjct: 201 VKEVEN 206

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} Length = 291

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 35/114 (30%)

Query: 7   LIDTVAVLSGY-ADVIVLRHPEPGA---------------------------------VK 32
             DT+    G   D +V R P                                     +K
Sbjct: 79  FFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIK 138

Query: 33  EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
           E  G V  L +  VGD+K+ R   S A LL ++  K+    P  L +P  ++ F
Sbjct: 139 EHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTL-IPRDVEVF 191

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A Length = 304

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 34/109 (31%)

Query: 7   LIDTVAVLSGY-ADVIVLRHPEPGA--------------------------------VKE 33
           L DT+  L     DV V+RH E                                   + E
Sbjct: 81  LYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYE 140

Query: 34  EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPES 82
           E     GLT+++ GD+K+ R   S A +LT    ++ +  P      E 
Sbjct: 141 EFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEW-QDEE 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	99.97
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	99.97
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	99.96
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	99.96
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	99.96
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	99.96
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	99.96
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	99.96
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	99.96
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	99.96
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	99.96
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	99.96
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	99.96
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	99.96
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	99.95
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	99.95
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	99.95
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	99.95
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	99.95
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	99.95
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	99.95
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	99.95
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	99.94
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	99.94
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	99.93
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	99.91
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	99.9
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	99.89
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	99.85
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.46
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.29
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	91.33
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	91.14
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	90.77
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	90.44
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	90.37
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	90.34
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	89.89
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	89.83
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	89.82
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.75
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	89.65
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	89.41
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	89.21
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	89.17
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	89.13
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	89.12
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	89.09
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	88.85
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	88.67
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	88.45
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	88.29
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	88.25
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	88.23
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	88.04
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	87.62
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	87.61
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	87.5
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	87.42
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	87.38
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	87.18
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	87.05
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	87.04
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	87.01
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	86.88
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	86.85
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	86.84
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	86.81
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	86.78
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	86.75
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	86.71
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	86.64
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	86.38
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	86.25
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	86.22
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	86.15
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	86.05
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	86.02
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	86.02
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	85.99
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	85.69
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	85.66
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	85.56
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	85.4
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	85.32
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	85.31
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	85.27
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	85.22
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	85.18
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	85.13
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	85.09
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	85.07
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	85.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.9
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	84.77
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	84.61
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	84.58
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	84.56
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	84.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	84.38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	84.32
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	84.3
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	84.25
2q5c_A	196	NTRC family transcriptional regulator; structural	84.11
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	84.08
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	83.94
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	83.84
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	83.8
2pju_A	225	Propionate catabolism operon regulatory protein; s	83.33
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	83.28
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	83.13
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	83.11
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.88
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	82.6
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	82.32
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	82.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	82.25
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	82.24
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	82.16
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	82.15
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	81.74
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	81.71
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	81.66
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	81.56
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	81.49
3l07_A	285	Bifunctional protein fold; structural genomics, ID	81.3
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	81.29
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	81.28
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	81.28
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	81.14
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	80.91
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	80.6
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	80.27
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	80.2
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	80.14
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	80.04

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=99.97  E-value=6.7e-31  Score=198.51  Aligned_cols=98  Identities=48%  Similarity=0.774  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd   48 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                                +|++|+++|+||+||||
T Consensus        80 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD  159 (306)
T 4ekn_B           80 VAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGD  159 (306)
T ss_dssp             SSSSCCHHHHHHHHHHHCSEEEEECSSTTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESC
T ss_pred             CCCCCCHHHHHHHHHHhCcEEEEEcCChHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcC
Confidence            4789999999999999999999999999877                                78999999999999999


Q ss_pred             CCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ++||||+|||+.++++| |++|++++|++|+|++++++.++++|+++++++
T Consensus       160 ~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  210 (306)
T 4ekn_B          160 LKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKE  210 (306)
T ss_dssp             TTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred             CCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEc
Confidence            98889999999999999 999999999999999999999999999998764

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=99.97  E-value=3.7e-31  Score=200.06  Aligned_cols=98  Identities=48%  Similarity=0.730  Sum_probs=92.9

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd   48 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                                +|++|+++|+||+||||
T Consensus        84 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD  163 (308)
T 1ml4_A           84 VKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGD  163 (308)
T ss_dssp             GGGTCCHHHHHHHHTTTCSEEEEEESSTTHHHHHHHTCSSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESC
T ss_pred             ccCCCCHHHHHHHHHHhCcEEEEecCChhHHHHHHHhCCCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            3689999999999999999999999999977                                78999999999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ++||||+|||+.++++||++|++++|++|+|++++++.++++|+++++++
T Consensus       164 ~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  213 (308)
T 1ml4_A          164 LKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETT  213 (308)
T ss_dssp             TTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred             CCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence            98889999999999999999999999999999999999999999988764

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=99.96  E-value=3.3e-30  Score=195.03  Aligned_cols=98  Identities=40%  Similarity=0.681  Sum_probs=92.3

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~vG   47 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                                 +|++|+++|+||+|+|
T Consensus        82 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG  161 (310)
T 3csu_A           82 GKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVG  161 (310)
T ss_dssp             CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEES
T ss_pred             hccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence            4789999999999999999999999988866                                 7899999999999999


Q ss_pred             CCCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          48 DLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |++||||+|||+.++++| |++|++++|++|+|++++++.++++|+++++++
T Consensus       162 D~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  213 (310)
T 3csu_A          162 DLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHS  213 (310)
T ss_dssp             CTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECS
T ss_pred             CCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEc
Confidence            998889999999999999 999999999999999999999999999987754

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=99.96  E-value=1.7e-29  Score=190.35  Aligned_cols=95  Identities=34%  Similarity=0.501  Sum_probs=86.2

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd   48 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                                +|++|+++|+||+|+||
T Consensus        78 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD  157 (299)
T 1pg5_A           78 VAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGD  157 (299)
T ss_dssp             ---CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEEC
T ss_pred             ccCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECC
Confidence            4689999999999999999999999999977                                78999999999999999


Q ss_pred             CCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.||||+|||+.++++| |++|++++|++|+|++++   ++++|+++++++
T Consensus       158 ~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~---~~~~g~~~~~~~  205 (299)
T 1pg5_A          158 LKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEI---LDELNYPVKEVE  205 (299)
T ss_dssp             CSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHH---HTTCCSCEEEES
T ss_pred             CCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHH---HHHcCCeEEEeC
Confidence            98889999999999999 999999999999999887   567888887754

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=99.96  E-value=2.9e-29  Score=189.63  Aligned_cols=97  Identities=25%  Similarity=0.276  Sum_probs=88.6

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++|+++|+||+|+||+
T Consensus        78 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~  157 (307)
T 2i6u_A           78 LGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDG  157 (307)
T ss_dssp             GGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHhhCCCCEEcCCCCCcCccHHHHHHHHHHHHhCCcCCeEEEEECCC
Confidence            3689999999999999999999999999977                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                       ++||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       158 -~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~  209 (307)
T 2i6u_A          158 -ANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTA  209 (307)
T ss_dssp             -TSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             -CcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence             34899999999999999999999999999998877665    7888888764

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=99.96  E-value=3.9e-29  Score=190.17  Aligned_cols=97  Identities=20%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++|+++|+||+|+||+
T Consensus        97 ~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~  176 (325)
T 1vlv_A           97 LGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDT  176 (325)
T ss_dssp             TTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHCSCEEESCCSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCT
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC
Confidence            4789999999999999999999999999877                               789999999999999997


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      . +||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       177 ~-~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~  228 (325)
T 1vlv_A          177 R-NNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTS  228 (325)
T ss_dssp             T-SHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEES
T ss_pred             C-cCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            3 3899999999999999999999999999998876665    7898888764

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=99.96  E-value=4.6e-29  Score=189.10  Aligned_cols=96  Identities=25%  Similarity=0.328  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++|+++|+||+|+||+
T Consensus        85 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~  164 (315)
T 1pvv_A           85 LRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDG  164 (315)
T ss_dssp             TTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC
T ss_pred             CCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC
Confidence            4789999999999999999999999999977                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       165 ~--rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~  215 (315)
T 1pvv_A          165 N--NVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLH  215 (315)
T ss_dssp             C--HHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             c--chHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            3  799999999999999999999999999998876665    7898888764

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=99.96  E-value=4.8e-29  Score=188.46  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCC-CcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVN-GLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~-g~~i~~vGd   48 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++|+++ |+||+||||
T Consensus        75 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD  154 (307)
T 3tpf_A           75 LSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGD  154 (307)
T ss_dssp             TTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESC
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHHHhCCCCEEeCCCCCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Confidence            4789999999999999999999999999877                               78999999 999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ++  ||+|||+.++++||++|++++|++|+|++++++.++    ++|+++++++
T Consensus       155 ~~--~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~  206 (307)
T 3tpf_A          155 SN--NMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY  206 (307)
T ss_dssp             SS--HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             CC--ccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            75  599999999999999999999999999999877665    7888888765

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=99.96  E-value=5.1e-29  Score=190.18  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-CCCCcEEEEECC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-RVNGLTITMVGD   48 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-~l~g~~i~~vGd   48 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++| +++|+||+|+||
T Consensus        84 ~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVINa~~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD  163 (335)
T 1dxh_A           84 IGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGD  163 (335)
T ss_dssp             BTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESC
T ss_pred             CcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecC
Confidence            4689999999999999999999999999977                               78999 999999999999


Q ss_pred             CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +.| ||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       164 ~~~-~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~  216 (335)
T 1dxh_A          164 ARN-NMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTE  216 (335)
T ss_dssp             CSS-HHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             Ccc-chHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            833 899999999999999999999999999998877665    7898888765

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=99.96  E-value=6.9e-29  Score=189.33  Aligned_cols=97  Identities=23%  Similarity=0.238  Sum_probs=88.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHH-hc-CCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEE-MG-RVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~-~g-~l~g~~i~~vG   47 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|+ +| +++|+||+|||
T Consensus        83 ~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vG  162 (333)
T 1duv_G           83 IGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAG  162 (333)
T ss_dssp             BTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHSSCEEESCCSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEES
T ss_pred             CcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHhCCCCeEcCCCCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEEC
Confidence            4689999999999999999999999999877                               788 89 99999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      |+.| ||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       163 D~~~-~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~  216 (333)
T 1duv_G          163 DARN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTE  216 (333)
T ss_dssp             CTTS-HHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CCcc-chHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            9833 899999999999999999999999999998877665    7898988765

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=99.96  E-value=1.1e-28  Score=187.63  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=85.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++|+++|+||+||||+
T Consensus        87 ~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~  166 (323)
T 3gd5_A           87 VGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDG  166 (323)
T ss_dssp             ----CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            4689999999999999999999999999877                               789999999999999999


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       167 ~--rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~  217 (323)
T 3gd5_A          167 N--NVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILR  217 (323)
T ss_dssp             C--HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             C--cHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEC
Confidence            3  799999999999999999999999999999887665    5688888765

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=99.96  E-value=6.5e-29  Score=188.69  Aligned_cols=96  Identities=22%  Similarity=0.361  Sum_probs=88.2

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||+|||+|+|+||+||+.|+.+                               +|++|+++|+||+||||+
T Consensus        85 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~  164 (321)
T 1oth_A           85 LGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG  164 (321)
T ss_dssp             BTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc
Confidence            4689999999999999999999999999977                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|+|++++++.++    ++|+++++++
T Consensus       165 ~--~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~  215 (321)
T 1oth_A          165 N--NILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTN  215 (321)
T ss_dssp             S--HHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             h--hhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            6  599999999999999999999999999999887655    5788888764

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=99.96  E-value=7.3e-29  Score=189.62  Aligned_cols=96  Identities=26%  Similarity=0.307  Sum_probs=85.6

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++|+++|+||+||||+
T Consensus       109 ~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~  188 (340)
T 4ep1_A          109 MGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDG  188 (340)
T ss_dssp             ----CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            4689999999999999999999999999877                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|+|++++++.++    +.|+++++++
T Consensus       189 ~--nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~  239 (340)
T 4ep1_A          189 N--NVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILH  239 (340)
T ss_dssp             C--HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEES
T ss_pred             c--hhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence            4  699999999999999999999999999999887765    6798888765

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=99.96  E-value=1.2e-28  Score=189.52  Aligned_cols=97  Identities=27%  Similarity=0.352  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++|+++|+||+|+||+
T Consensus       106 ~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~  185 (359)
T 2w37_A          106 LGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDG  185 (359)
T ss_dssp             TTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT
T ss_pred             CCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHHhCCCCEEcCCCCCCCccHHHHHHHHHHHHhCCcCCeEEEEECCC
Confidence            4789999999999999999999999999977                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      .| ||+|||+.++++||++|++++|++|+|+++++++++    ++|+++++++
T Consensus       186 ~~-rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~  237 (359)
T 2w37_A          186 RN-NVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITD  237 (359)
T ss_dssp             TS-HHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             cc-chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            33 899999999999999999999999999998877665    7898888765

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=99.95  E-value=1.9e-28  Score=188.73  Aligned_cols=97  Identities=22%  Similarity=0.236  Sum_probs=89.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+|++||+.++.+                               +|++|+++|+||+||||+
T Consensus       110 ~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD~  189 (365)
T 4amu_A          110 MGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDY  189 (365)
T ss_dssp             CSSSSCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSSCTTCEEEEESST
T ss_pred             CCCCcCHHHHHHHHHhhCcEEEEecCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            5799999999999999999999999999877                               789999999999999999


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCC--CHHHHHHH----HhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGM--PESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~--~~~~~~~a----~~~g~~~~~~~   98 (99)
                      .| ||+|||+.++++||++|++++|++|+|  ++++++++    +++|+++++++
T Consensus       190 ~n-nva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~  243 (365)
T 4amu_A          190 KN-NVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFST  243 (365)
T ss_dssp             TS-HHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEES
T ss_pred             Cc-chHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence            76 799999999999999999999999999  99988765    56788888765

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=99.95  E-value=1.7e-28  Score=186.83  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=85.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-------CCCCcE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-------RVNGLT   42 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-------~l~g~~   42 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++|       +++|+|
T Consensus        84 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~  163 (328)
T 3grf_A           84 VGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIK  163 (328)
T ss_dssp             -----CHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCC
T ss_pred             CCCCCCHHHHHHHHHhhCCEEEEecCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCccccccccCCcE
Confidence            4689999999999999999999999999877                               78899       899999


Q ss_pred             EEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC--CCHHHHHHHHh------cCCeEEEEe
Q psy4411          43 ITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG--MPESIQEFVAS------KGKQQEVYE   98 (99)
Q Consensus        43 i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~--~~~~~~~~a~~------~g~~~~~~~   98 (99)
                      |+||||+.| ||+|||+.++++||++|++++|++|+  |++++++++++      +|+++++++
T Consensus       164 va~vGD~~~-~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~  226 (328)
T 3grf_A          164 FAYCGDSMN-NVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFH  226 (328)
T ss_dssp             EEEESCCSS-HHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred             EEEeCCCCc-chHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEc
Confidence            999999966 89999999999999999999999999  99999877664      688888765

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=99.95  E-value=3.8e-28  Score=185.64  Aligned_cols=96  Identities=22%  Similarity=0.298  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHh--c-CCCCcEEEEE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEM--G-RVNGLTITMV   46 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~--g-~l~g~~i~~v   46 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++  | +++|+||+||
T Consensus       102 l~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~v  181 (339)
T 4a8t_A          102 LGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFV  181 (339)
T ss_dssp             SSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEE
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhCCCCEEECCCCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEE
Confidence            4789999999999999999999999999877                               7889  8 8999999999


Q ss_pred             CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          47 GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ||++  ||+|||+.++++||++|++++|++|+|+++++++++    +.|+++++++
T Consensus       182 GD~~--rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~  235 (339)
T 4a8t_A          182 GDAT--QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTD  235 (339)
T ss_dssp             SSCC--HHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             CCCc--hhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence            9993  799999999999999999999999999999987754    5688888765

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=99.95  E-value=5.2e-28  Score=185.78  Aligned_cols=96  Identities=22%  Similarity=0.298  Sum_probs=87.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHh--c-CCCCcEEEEE
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEM--G-RVNGLTITMV   46 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~--g-~l~g~~i~~v   46 (99)
                      +++|||++|||||||+|+|+||+||+.++.+                               +|++  | +++|+||+||
T Consensus        80 l~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~v  159 (355)
T 4a8p_A           80 LGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFV  159 (355)
T ss_dssp             BTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEE
T ss_pred             CCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEE
Confidence            4689999999999999999999999999877                               7889  8 8999999999


Q ss_pred             CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          47 GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ||++  ||+|||+.++++||++|++++|++|+|+++++++++    +.|+++++++
T Consensus       160 GD~~--rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~  213 (355)
T 4a8p_A          160 GDAT--QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTD  213 (355)
T ss_dssp             SCCC--HHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred             CCCc--hhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence            9993  799999999999999999999999999999987654    5688888765

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=99.95  E-value=9.5e-28  Score=184.23  Aligned_cols=96  Identities=25%  Similarity=0.339  Sum_probs=85.4

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCC-----------
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRV-----------   38 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l-----------   38 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|+||.+           
T Consensus       105 l~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVINag~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~  184 (353)
T 3sds_A          105 LGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSL  184 (353)
T ss_dssp             -CCSSCHHHHHHHHHTSCSEEEEECSSHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHTC--------CTTCC
T ss_pred             ccCCccHHHHHHHHHHhcCEEEEEeCChHHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHhCCCccccccccccc
Confidence            4689999999999999999999999999877                               7899986           


Q ss_pred             --CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh------cCCeEEEEe
Q psy4411          39 --NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS------KGKQQEVYE   98 (99)
Q Consensus        39 --~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~------~g~~~~~~~   98 (99)
                        +|+||+||||++|  |+|||+.++++||++|++++|++|++|+++++++++      +|+.+++++
T Consensus       185 ~l~glkva~vGD~~n--va~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~  250 (353)
T 3sds_A          185 GLEGLKIAWVGDANN--VLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTT  250 (353)
T ss_dssp             SCTTCEEEEESCCCH--HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEES
T ss_pred             ccCCCEEEEECCCch--HHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEEC
Confidence              9999999999975  999999999999999999999999999999887764      477887764

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.95  E-value=1e-28  Score=186.85  Aligned_cols=94  Identities=22%  Similarity=0.368  Sum_probs=84.5

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +++|||++|||||||+|+|+||+||+.|+.+                               +|++|+++|+||+||||+
T Consensus        84 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~  163 (309)
T 4f2g_A           84 LGRGEPVEDSAQVISRMVDIIMIRTFEQDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDA  163 (309)
T ss_dssp             ETBEECHHHHHHHHHHHCSEEEEECSCHHHHHHHHHTCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEecCCHHHHHHHHHhCCCCEEECCCCccCcHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            3689999999999999999999999999877                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +  ||+|||+.++++||++|++++|++|+|+++++  ++++|+++++++
T Consensus       164 ~--~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~--~~~~g~~v~~~~  208 (309)
T 4f2g_A          164 N--NMLYTWIQAARILDFKLQLSTPPGYALDAKLV--DAESAPFYQVFD  208 (309)
T ss_dssp             C--HHHHHHHHHHHHHTCEEEEECCGGGCCCGGGS--CGGGGGGEEECS
T ss_pred             c--chHHHHHHHHHHcCCEEEEECCcccCCCHHHH--HHHcCCeEEEEc
Confidence            5  59999999999999999999999999999875  345677776653

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.95  E-value=2e-27  Score=179.22  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=79.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      ++||||++||||+||+|+|+||+||+.++.+                               +|++|+++|+||+|+||+
T Consensus        84 ~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~ia~vGD~  163 (301)
T 2ef0_A           84 IGEREPVRDVAKNLERFVEGIAARVFRHETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDG  163 (301)
T ss_dssp             TTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC
T ss_pred             cCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHHHHCCCCEEeCCCCccCchHHHHHHHHHHHHhCCcCCcEEEEECCC
Confidence            4789999999999999999999999999977                               789999999999999998


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV   87 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a   87 (99)
                      +  ||+|||+.++++||++|++++|++|+|++++++++
T Consensus       164 ~--rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~  199 (301)
T 2ef0_A          164 N--NVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRA  199 (301)
T ss_dssp             C--HHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHH
T ss_pred             c--hhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhc
Confidence            3  79999999999999999999999999999887765

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=99.94  E-value=3e-27  Score=181.66  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vG   47 (99)
                      +++|||++||||+||+|+|+||+||+.++.+                               +|+++  .++|++|+|||
T Consensus       109 ~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~la~~s~vPVING~g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vG  188 (358)
T 4h31_A          109 IGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLG  188 (358)
T ss_dssp             BTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHSSSCEEESCCSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEES
T ss_pred             ccCccchhHHHHHhhccCceeEecccchhHHHHhhhhccCceECCCCcCCCchHHHHHHHHHHHHhcCCCcCceEEEecC
Confidence            4789999999999999999999999999877                               67776  79999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      |+.| ||+|||+.++++||++|++++|++|+|++++++.++    ++|+++++++
T Consensus       189 D~~~-~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~  242 (358)
T 4h31_A          189 DARN-NVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTE  242 (358)
T ss_dssp             CTTS-HHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             CCCc-ccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceecc
Confidence            9865 899999999999999999999999999999987654    6799998765

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=99.94  E-value=7e-27  Score=176.45  Aligned_cols=80  Identities=30%  Similarity=0.436  Sum_probs=76.0

Q ss_pred             CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEEC
Q psy4411           1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVG   47 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vG   47 (99)
                      +++|||++|||||||+| +|+||+||+.|+.+                                +|++|+++|+||+|||
T Consensus        75 ~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vG  154 (304)
T 3r7f_A           75 VQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHG  154 (304)
T ss_dssp             SCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred             CCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence            47899999999999999 99999999998866                                7899999999999999


Q ss_pred             CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC
Q psy4411          48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP   80 (99)
Q Consensus        48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~   80 (99)
                      |++|+||+|||+.++++||++|++++|++|+|+
T Consensus       155 D~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~  187 (304)
T 3r7f_A          155 DIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE  187 (304)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT
T ss_pred             CCCCcchHHHHHHHHHHcCCEEEEECCCccCcc
Confidence            999889999999999999999999999999884

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=99.93  E-value=1e-25  Score=169.27  Aligned_cols=81  Identities=30%  Similarity=0.427  Sum_probs=74.5

Q ss_pred             CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEE
Q psy4411           1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMV   46 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~v   46 (99)
                      ++||||++||||+||+| +|+||+||+.++.+                                 +|++|+++|+||+|+
T Consensus        73 ~~kgEsl~DTarvls~~~~D~iviR~~~~~~~~~~la~~~~vPVINAG~g~~~HPtQaLaDl~Ti~e~~g~l~gl~va~v  152 (291)
T 3d6n_B           73 TVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYV  152 (291)
T ss_dssp             CCTTCCHHHHHHHHHHTTCSEEEEEESSCCCSCHHHHHTCSSEEEEEEETTTBCHHHHHHHHHHHHHHHSCCTTCEEEEE
T ss_pred             ccCCCcHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHhCCCCEEeCccCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEE
Confidence            47899999999999999 59999999987743                                 789999999999999


Q ss_pred             CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCH
Q psy4411          47 GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE   81 (99)
Q Consensus        47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~   81 (99)
                      ||..++||+|||+.++++||++|++++|++|.|++
T Consensus       153 GDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~  187 (291)
T 3d6n_B          153 GDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD  187 (291)
T ss_dssp             SCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT
T ss_pred             CCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch
Confidence            99766789999999999999999999999998776

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=99.91  E-value=2e-24  Score=168.01  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=81.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCC-----ch---------------------h-H--------------------HH
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PG---------------------A-V--------------------KE   33 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~---------------------~-~--------------------~e   33 (99)
                      +++|||++|||||||+|+|+||+||+.     |.                     . +                    +|
T Consensus       102 l~kGEsl~DTarvLs~y~D~IviRh~~~~g~~~~~~~~la~~~~~~~~~~v~~~~~PVINal~d~~HPtQaLaDl~TI~E  181 (399)
T 3q98_A          102 IAHGETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLRE  181 (399)
T ss_dssp             --CCTTHHHHHHHTCTTEEEEEEEECCCCCC---HHHHHHHHHHHHHHTTSCSSCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhhCcEEEEeccccCCcchHHHHHHHHHhhhhcccccccCCCcEEeCCCCCcCcHHHHHHHHHHHH
Confidence            478999999999999999999999862     21                     1 2                    78


Q ss_pred             HhcC---CCCcEEEEECCCCC-----chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          34 EMGR---VNGLTITMVGDLKN-----GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        34 ~~g~---l~g~~i~~vGd~~n-----~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      ++|+   ++|+||+|+||..+     .||+|||+.++++||++|++++|++|+|++++++.+    +++|+++++++
T Consensus       182 ~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~  258 (399)
T 3q98_A          182 HFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVT  258 (399)
T ss_dssp             HHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             HhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence            8997   68899999976322     279999999999999999999999999999988765    46799988765

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=99.90  E-value=4.2e-24  Score=166.97  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCC-----ch---------------------h-H--------------------HH
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PG---------------------A-V--------------------KE   33 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~---------------------~-~--------------------~e   33 (99)
                      +++|||++|||+|||+|+|+||+||+.     |+                     . +                    +|
T Consensus        99 ~~kGEsl~DTarvLs~y~D~IviRh~~~~g~~~~~~~~lA~~~~~~~~~~~~~~~~PVINa~~~~~HPtQaLaDl~TI~E  178 (418)
T 2yfk_A           99 ISHGETVRETANMISFMADIIGIRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIH  178 (418)
T ss_dssp             ----CHHHHHHHHTTTTEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHTTSCSSCCEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHhCcEEEEecccccCcchHHHHHHHHHHHhhhcccccCCCCeEEeCCCCccChHHHHHHHHHHHH
Confidence            468999999999999999999999973     21                     1 2                    78


Q ss_pred             HhcC---CCCcEEEEECCCCC-----chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          34 EMGR---VNGLTITMVGDLKN-----GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        34 ~~g~---l~g~~i~~vGd~~n-----~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      ++|+   ++|+||+||||...     .||+|||+.++++||++|++++|++|+|+|++++.|+    +.|+++++++
T Consensus       179 ~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~  255 (418)
T 2yfk_A          179 EFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTN  255 (418)
T ss_dssp             HTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEES
T ss_pred             HhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence            8998   78999999964211     1599999999999999999999999999999887644    5788888764

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=99.89  E-value=1.8e-23  Score=159.03  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             CCCCHHHHHHHHhhccCEEEEccC----------CchhH-------------------------------HHHhc--CCC
Q psy4411           3 MYSNLIDTVAVLSGYADVIVLRHP----------EPGAV-------------------------------KEEMG--RVN   39 (99)
Q Consensus         3 ~~Es~~Dta~vls~y~D~iv~R~~----------~~~~~-------------------------------~e~~g--~l~   39 (99)
                      +|||++|||+|||+|+|+|++||+          .++.+                               +|++|  +++
T Consensus        89 kgEsl~DTarvLs~y~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~  168 (324)
T 1js1_X           89 KPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPK  168 (324)
T ss_dssp             CCEEHHHHHHHHHHTCSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHHHHHHCSSSSCE
T ss_pred             CCCCHHHHHHHHHHhCcEEEEecccccccccccccchHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHcCCCCee
Confidence            899999999999999999999999          87766                               78899  899


Q ss_pred             CcEEEE-----ECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHH
Q psy4411          40 GLTITM-----VGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQ   84 (99)
Q Consensus        40 g~~i~~-----vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~   84 (99)
                       ++|+|     +|| +  ||+|||+.++++||++|++++|++|+|+++++
T Consensus       169 -l~ia~a~~~~vGD-~--rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~  214 (324)
T 1js1_X          169 -VVMTWAPHPRPLP-Q--AVPNSFAEWMNATDYEFVITHPEGYELDPKFV  214 (324)
T ss_dssp             -EEEECCCCSSCCC-S--HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHH
T ss_pred             -EEEEEEcccccCC-c--chHHHHHHHHHHCCCEEEEeCCcccCCChhhc
Confidence             99999     999 3  79999999999999999999999999998774

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=99.85  E-value=4.7e-21  Score=147.02  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCC----------chhH------------------------------HHHhcC--CC
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPE----------PGAV------------------------------KEEMGR--VN   39 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~----------~~~~------------------------------~e~~g~--l~   39 (99)
                      .++||++||+++||+|+|+|++|++.          ++.+                              +|+||.  ++
T Consensus       110 ~k~Es~~DTarvls~y~D~iviR~~~~~~~~~~~~~~~~~~~~a~~~~vPVIN~g~~~HPtQaL~Dl~Ti~e~~G~~dl~  189 (359)
T 3kzn_A          110 DTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLR  189 (359)
T ss_dssp             SCCEEHHHHHHHHHHHCSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSSCCHHHHHHHHHHHHHHHTSSCCT
T ss_pred             cccchHHHHHHHHhccCcEEEEEccccccchhcchhhHHHHHHHHhCCCcccCcccccCchHHHHHHHHHHHHcCCcccc
Confidence            47899999999999999999999764          3333                              789996  88


Q ss_pred             CcEEEEEC----CCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHH----HHhcCCeEEEEe
Q psy4411          40 GLTITMVG----DLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEF----VASKGKQQEVYE   98 (99)
Q Consensus        40 g~~i~~vG----d~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~----a~~~g~~~~~~~   98 (99)
                      |++++++|    |..++||+||++.++++||+++++++|+ +|.|+++++++    ++++|.++++++
T Consensus       190 g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  257 (359)
T 3kzn_A          190 GKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSH  257 (359)
T ss_dssp             TCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred             CCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCccccc
Confidence            99998884    5557799999999999999999999995 89899988766    456788888764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.46  E-value=0.11  Score=36.99  Aligned_cols=52  Identities=15%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ   93 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~   93 (99)
                      -+++|+++.+||-+.   ++.+-+..+...|.++++++|+   +.+++.+.+++.++.
T Consensus        27 l~L~gk~VLVVGgG~---va~~ka~~Ll~~GA~VtVvap~---~~~~l~~l~~~~~i~   78 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGT---IATRRIKGFLQEGAAITVVAPT---VSAEINEWEAKGQLR   78 (223)
T ss_dssp             ECCTTCCEEEECCSH---HHHHHHHHHGGGCCCEEEECSS---CCHHHHHHHHTTSCE
T ss_pred             EEcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHcCCcE
Confidence            469999999999864   9999999999999999999995   556665555544443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.29  E-value=0.52  Score=32.52  Aligned_cols=55  Identities=11%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      .+.+++++++|.+.   ++-.++..++.+| +++++.+....+++.+.+.+++.|+++.
T Consensus       138 ~~~~~~v~vvG~G~---~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~gv~i~  192 (297)
T 3fbs_A          138 ELDQGKIGVIAASP---MAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAARGVRVE  192 (297)
T ss_dssp             GGTTCEEEEECCST---THHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHTTCEEE
T ss_pred             hhcCCEEEEEecCc---cHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHCCcEEE
Confidence            35789999999865   7778888888899 9999998777788888888999998764

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=91.33  E-value=0.69  Score=33.52  Aligned_cols=54  Identities=19%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |.+|+-.+.   ||...+++.+++++|++++++-|++  .++.-++.++..|+++....
T Consensus        61 g~~vv~~ss---GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~Ga~v~~~~  114 (303)
T 2v03_A           61 GDVLIEATS---GNTGIALAMIAALKGYRMKLLMPDN--MSQERRAAMRAYGAELILVT  114 (303)
T ss_dssp             TCEEEEECS---SHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECC---cHHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            356666654   3489999999999999999999987  55666677888898887654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=91.14  E-value=1.3  Score=32.66  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .|+++ ++|++++.+|-++.  +.+.++..+...|++|+++.-.
T Consensus       143 L~~~~-l~Gk~vvVvG~s~i--VG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          143 MDYYG-YHENTVTIVNRSPV--VGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             HHHHT-CCSCEEEEECCCTT--THHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHhC-cCCCEEEEEcCChH--HHHHHHHHHHHCCCeEEEEeCC
Confidence            56677 99999999998776  8999999999999999999753

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=90.77  E-value=0.53  Score=34.40  Aligned_cols=56  Identities=11%  Similarity=0.004  Sum_probs=42.3

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .+|+-.|. ..||...+++.+|+++|++++++-|+.. .++.-++.++..|+++...+
T Consensus        71 ~~vv~~G~-ssGN~g~alA~~a~~~G~~~~iv~p~~~-~~~~k~~~~~~~GA~v~~~~  126 (325)
T 1j0a_A           71 DVVITVGA-VHSNHAFVTGLAAKKLGLDAILVLRGKE-ELKGNYLLDKIMGIETRVYD  126 (325)
T ss_dssp             SEEEEECC-TTCHHHHHHHHHHHHTTCEEEEEEESCC-CSCHHHHHHHHTTCEEEEES
T ss_pred             CEEEEcCC-cchHHHHHHHHHHHHhCCcEEEEECCCC-CCCchHHHHHHCCCEEEEeC
Confidence            35555543 3346999999999999999999999875 24455577888898887654

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=90.44  E-value=0.58  Score=33.84  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++.+++++|++++++.|++  .++.-++.++..|+.+...+
T Consensus        69 ssGN~g~a~A~~a~~~G~~~~i~~p~~--~~~~k~~~~~~~Ga~V~~~~  115 (304)
T 1ve1_A           69 TSGNTGIGLAMIAASRGYRLILTMPAQ--MSEERKRVLKAFGAELVLTD  115 (304)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEEEETT--CCHHHHHHHHHTTCEEEEEC
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHHcCCEEEEEC
Confidence            455699999999999999999999987  45666677888899887654

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=90.37  E-value=0.53  Score=34.24  Aligned_cols=54  Identities=9%  Similarity=0.082  Sum_probs=41.4

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +.+|+-.+.   ||...+++.+++++|++++++-|++  .++.-++.++..|+++...+
T Consensus        54 ~~~vv~~ss---GN~g~alA~~a~~~G~~~~i~~p~~--~~~~k~~~~~~~Ga~V~~~~  107 (318)
T 2rkb_A           54 CRHLVCSSG---GNAGIAAAYAARKLGIPATIVLPES--TSLQVVQRLQGEGAEVQLTG  107 (318)
T ss_dssp             CCEEEECCC---SHHHHHHHHHHHHHTCCEEEEECTT--CCHHHHHHHHHTTCEEEECC
T ss_pred             CCEEEEECC---chHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHhcCCEEEEEC
Confidence            345544444   4599999999999999999999987  45666677888898886643

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=90.34  E-value=0.61  Score=34.05  Aligned_cols=46  Identities=17%  Similarity=0.309  Sum_probs=38.0

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...+++.+++++|++++++-|+..  ++.-++.++..|+++..++
T Consensus        82 sGN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~~  127 (323)
T 1v71_A           82 SGNHAQAIALSAKILGIPAKIIMPLDA--PEAKVAATKGYGGQVIMYD  127 (323)
T ss_dssp             SSHHHHHHHHHHHHTTCCEEEEEETTC--CHHHHHHHHHTTCEEEEEC
T ss_pred             CCcHHHHHHHHHHHcCCCEEEECCCCC--cHHHHHHHHHcCCEEEEEC
Confidence            356999999999999999999999874  4555677888899887654

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=89.89  E-value=0.58  Score=33.97  Aligned_cols=47  Identities=15%  Similarity=0.124  Sum_probs=38.2

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++.+++++|++++++-|++  .++.-++.++..|+++....
T Consensus        74 ssGN~g~alA~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~Ga~v~~~~  120 (313)
T 2q3b_A           74 TSGNTGIALAMVCAARGYRCVLTMPET--MSLERRMLLRAYGAELILTP  120 (313)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHCCCEEEEeC
Confidence            445699999999999999999999987  45566677888898887653

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=89.83  E-value=0.9  Score=33.36  Aligned_cols=59  Identities=27%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             hcCCC-CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          35 MGRVN-GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        35 ~g~l~-g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .|.++ +.+|+-...   ||.+++++.+++++|++++++-|++  .++.-++.++..|+++....
T Consensus        67 ~g~l~~~~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  126 (325)
T 3dwg_A           67 DGLLRPGATILEPTS---GNTGISLAMAARLKGYRLICVMPEN--TSVERRQLLELYGAQIIFSA  126 (325)
T ss_dssp             TTCCCTTCEEEEECS---SHHHHHHHHHHHHHTCEEEEEEESS--SCHHHHHHHHHHTCEEEEEC
T ss_pred             cCCCCCCCEEEEeCC---cHHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHCCCEEEEEC
Confidence            34443 345555443   4599999999999999999999987  45555677788898887653

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=89.82  E-value=0.51  Score=34.32  Aligned_cols=53  Identities=19%  Similarity=0.176  Sum_probs=41.0

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .+|+-.+.   ||...+++.+++++|++++++-|++  .++.-++.++..|+++....
T Consensus        63 ~~vv~~ss---GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~v~~~~  115 (316)
T 1y7l_A           63 KEIVDATS---GNTGIALAYVAAARGYKITLTMPET--MSLERKRLLCGLGVNLVLTE  115 (316)
T ss_dssp             CEEEESCC---SHHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEeCC---cHHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHcCCEEEEeC
Confidence            45544443   4599999999999999999999987  55666677888898887653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.75  E-value=0.96  Score=34.89  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=38.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK   92 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~   92 (99)
                      +++|++|.++|-+.   ++.+-+..+...|.+|++++|+   +.+++.+.+++.++
T Consensus         9 ~l~~~~vlVvGgG~---va~~k~~~L~~~ga~V~vi~~~---~~~~~~~l~~~~~i   58 (457)
T 1pjq_A            9 QLRDRDCLIVGGGD---VAERKARLLLEAGARLTVNALT---FIPQFTVWANEGML   58 (457)
T ss_dssp             CCBTCEEEEECCSH---HHHHHHHHHHHTTBEEEEEESS---CCHHHHHHHTTTSC
T ss_pred             ECCCCEEEEECCCH---HHHHHHHHHHhCcCEEEEEcCC---CCHHHHHHHhcCCE
Confidence            57899999999864   9999999999999999999995   34555444333333

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=89.65  E-value=0.61  Score=34.02  Aligned_cols=46  Identities=20%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .||...+++.+++++|++++++-|++  .++.-++.++..|+++...+
T Consensus        75 sGN~g~alA~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  120 (322)
T 1z7w_A           75 SGNTGVGLAFTAAAKGYKLIITMPAS--MSTERRIILLAFGVELVLTD  120 (322)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHcCCEEEEeC
Confidence            45699999999999999999999987  45666677888898887653

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=89.41  E-value=0.75  Score=34.13  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .+|+-.+.   ||.+++++.+|+++|++++++-|++  .++.-++.++..|+++....
T Consensus        77 ~~vv~~Ss---GNhg~a~A~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~v~  129 (346)
T 3l6b_A           77 KAVVTHSS---GNHGQALTYAAKLEGIPAYIVVPQT--APDCKKLAIQAYGASIVYCE  129 (346)
T ss_dssp             SCEEEECS---SHHHHHHHHHHHHTTCCEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEeCC---CHHHHHHHHHHHHhCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEC
Confidence            34444443   4599999999999999999999987  45555677888898886653

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=89.21  E-value=0.61  Score=33.81  Aligned_cols=47  Identities=11%  Similarity=0.092  Sum_probs=38.6

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++.+++++|++++++-|++  .++.-++.++..|+++...+
T Consensus        72 SsGN~g~a~A~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  118 (303)
T 1o58_A           72 TSGNMGIAIAMIGAKRGHRVILTMPET--MSVERRKVLKMLGAELVLTP  118 (303)
T ss_dssp             CSSHHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CchHHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            445699999999999999999999987  45666677888898887653

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=89.17  E-value=0.65  Score=33.61  Aligned_cols=47  Identities=19%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++.+|+++|++++++-|++  .++.-++.++..|+++....
T Consensus        72 ssGN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~v~~~~  118 (308)
T 2egu_A           72 TSGNTGIGLAMVAAAKGYKAVLVMPDT--MSLERRNLLRAYGAELVLTP  118 (308)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEEESC--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence            445699999999999999999999987  35556677888898887653

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=89.13  E-value=0.99  Score=33.40  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             hcCCC-CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          35 MGRVN-GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        35 ~g~l~-g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .|.++ |.+|+-.+.   ||...+++.+++++|++++++-|++  .++.-++.++..|+.+....
T Consensus        72 ~g~~~~g~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  131 (343)
T 2pqm_A           72 DGRLKPGMEIIESTS---GNTGIALCQAGAVFGYRVNIAMPST--MSVERQMIMKAFGAELILTE  131 (343)
T ss_dssp             HTSSCTTCEEEEECS---SHHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             cCCCCCCCEEEEECC---cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEC
Confidence            34433 346655555   3489999999999999999999987  45666677888898887653

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=89.12  E-value=0.7  Score=34.14  Aligned_cols=45  Identities=22%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ||..++++.+|+++|++++++-|++  .++.-++.++..|+++...+
T Consensus        81 GN~g~alA~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~  125 (334)
T 3tbh_A           81 GNTGVSLAHLGAIRGYKVIITMPES--MSLERRCLLRIFGAEVILTP  125 (334)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEC
Confidence            4599999999999999999999987  45555677888898887653

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=89.09  E-value=2  Score=32.06  Aligned_cols=44  Identities=14%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .++.+ +++|++++.+|-.+-  |.+-++.++..-++.|++|+-..-
T Consensus       170 L~~~~i~l~Gk~vvViGRS~i--VGkPla~LL~~~~ATVTi~Hs~T~  214 (303)
T 4b4u_A          170 LKENNIEIAGKHAVVVGRSAI--LGKPMAMMLLQANATVTICHSRTQ  214 (303)
T ss_dssp             HHHTTCCCTTCEEEEECCCTT--THHHHHHHHHHTTCEEEEECTTCS
T ss_pred             HHHHCCCCCCCEEEEEecccc--ccchHHHHHHhcCCEEEEecCCCC
Confidence            34555 799999999999887  999999999999999999987654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=88.85  E-value=2.2  Score=31.52  Aligned_cols=41  Identities=17%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .|+.+ +++|++++.+|-++.  +.+.++.++...|++|+++.-
T Consensus       152 L~~~~i~l~Gk~vvVvGrs~i--VG~plA~lL~~~gAtVtv~hs  193 (286)
T 4a5o_A          152 LASTGADLYGMDAVVVGASNI--VGRPMALELLLGGCTVTVTHR  193 (286)
T ss_dssp             HHHTTCCCTTCEEEEECTTST--THHHHHHHHHHTTCEEEEECT
T ss_pred             HHHhCCCCCCCEEEEECCCch--hHHHHHHHHHHCCCeEEEEeC
Confidence            34554 699999999998776  899999999999999999964

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=88.67  E-value=1.2  Score=31.42  Aligned_cols=55  Identities=7%  Similarity=0.015  Sum_probs=42.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~   95 (99)
                      ..+++++++|.+.   ++-.++..++.+|.+++++.+.. +..++.+.+.+++.|+++.
T Consensus       153 ~~~~~v~viG~G~---~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~  208 (319)
T 3cty_A          153 FKGKRVVTIGGGN---SGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYI  208 (319)
T ss_dssp             GBTSEEEEECCSH---HHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEECCCH---HHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEE
Confidence            4568999999754   77778888889999999998754 4456777788888887763

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=88.45  E-value=1  Score=32.98  Aligned_cols=36  Identities=11%  Similarity=0.188  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       121 ~l~g~~vgIIG~G~---IG~~~A~~l~~~G~~V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGE---IGTRVGKILAALGAQVRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCST---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEccCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            58899999999754   9999999999999999988763

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=88.29  E-value=0.95  Score=34.17  Aligned_cols=46  Identities=11%  Similarity=0.058  Sum_probs=37.4

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||..++++.+++++|++.+++-|++  .++.-++.++..|+.+...
T Consensus       119 SsGNhg~a~A~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~Vv~v  164 (398)
T 4d9i_A          119 TDGNHGRGVAWAAQQLGQNAVIYMPKG--SAQERVDAILNLGAECIVT  164 (398)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEEEECTT--CCHHHHHHHHTTTCEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEeCC--CCHHHHHHHHHcCCEEEEE
Confidence            344599999999999999999999986  4566667788888888654

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=88.25  E-value=0.79  Score=34.30  Aligned_cols=52  Identities=17%  Similarity=0.147  Sum_probs=40.3

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .+|+-.+.   ||...+++.+++++|++++++-|++  .++.-++.++..|+++...
T Consensus        94 ~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~Vv~v  145 (364)
T 4h27_A           94 AHFVCSSS---GNAGMAAAYAARQLGVPATIVVPGT--TPALTIERLKNEGATVKVV  145 (364)
T ss_dssp             CEEEECCS---SHHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEeCC---ChHHHHHHHHHHHhCCceEEEECCC--CCHHHHHHHHHcCCEEEEE
Confidence            34444444   4589999999999999999999987  4566667788889888654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=88.04  E-value=2.7  Score=31.12  Aligned_cols=43  Identities=14%  Similarity=0.091  Sum_probs=36.2

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++.+ +++|++++.+|-++.  |.+.++..+...|++|+++.-..
T Consensus       150 l~~~~i~l~gk~vvVIG~s~i--VG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          150 LERYNIDTFGLNAVVIGASNI--VGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             HHHTTCCCTTCEEEEECCCTT--THHHHHHHHHTTTCEEEEECSSC
T ss_pred             HHHcCCCCCCCEEEEECCChH--HHHHHHHHHHHCCCeEEEEeCCc
Confidence            34554 799999999999876  89999999999999999997433

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=87.62  E-value=1  Score=33.79  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=40.4

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .+|+-.+.   ||...+++.+|+++|++++++-|++.  ++.-++.++..|+++...
T Consensus        94 ~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~  145 (372)
T 1p5j_A           94 AHFVCSSA---GNAGMAAAYAARQLGVPATIVVPGTT--PALTIERLKNEGATCKVV  145 (372)
T ss_dssp             CEEEECCS---SHHHHHHHHHHHHHTCCEEEEECTTC--CHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEeCC---CHHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHhcCCEEEEE
Confidence            44444444   45999999999999999999999873  566667788889888654

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=87.61  E-value=1.3  Score=32.71  Aligned_cols=48  Identities=17%  Similarity=0.060  Sum_probs=38.8

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++..++++|++++++-|++. .++.-++.++..|+++...+
T Consensus        84 SsGN~g~alA~~a~~~G~~~~iv~p~~~-~~~~k~~~~~~~GA~V~~v~  131 (351)
T 3aey_A           84 STGNTAASAAAYAARAGILAIVVLPAGY-VALGKVAQSLVHGARIVQVE  131 (351)
T ss_dssp             CSSHHHHHHHHHHHHHTSEEEEEEETTC-SCHHHHHHHHHTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEECCCC-CCHHHHHHHHHcCCEEEEEC
Confidence            4567999999999999999999999874 45555677888898886654

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=87.50  E-value=1  Score=33.15  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=40.5

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC-----CC----HHHHHHHHhcCCeEEEEe
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG-----MP----ESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~-----~~----~~~~~~a~~~g~~~~~~~   98 (99)
                      +|+-.|. ..||.+.+++.+|+++|++++++-|+...     ..    ..-++.++..|+++...+
T Consensus        69 ~vv~~G~-ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~  133 (341)
T 1f2d_A           69 HLVSIGG-RQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE  133 (341)
T ss_dssp             EEEEEEE-TTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECC
T ss_pred             EEEEcCC-cchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeC
Confidence            5554554 33469999999999999999999997663     11    224566788888887653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=87.42  E-value=0.46  Score=34.79  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=33.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      +++|++|.+||.+.   ++.+.+..+...|.+|++++|+.
T Consensus        10 ~l~~k~VLVVGgG~---va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGE---VGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESH---HHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcH---HHHHHHHHHHhCCCEEEEEcCCC
Confidence            58899999999865   99999999999999999999954

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=87.38  E-value=0.87  Score=33.35  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+..+|++|....|.
T Consensus       139 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~d~~  174 (307)
T 1wwk_A          139 ELEGKTIGIIGFG---RIGYQVAKIANALGMNILLYDPY  174 (307)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCceEEEEccC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            5889999999975   49999999999999999988874

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=87.18  E-value=0.56  Score=33.95  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=37.6

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      +.+|+-.+   .||...+++.+++++|++++++-|++.  ++.-++.++..|.++..
T Consensus        65 ~~~vv~~s---sGN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~  116 (311)
T 1ve5_A           65 PKGLLAVS---SGNHAQGVAYAAQVLGVKALVVMPEDA--SPYKKACARAYGAEVVD  116 (311)
T ss_dssp             CCCEEEEC---SSHHHHHHHHHHHHHTCCEEEECCCC----CCHHHHHHHTTCEEEC
T ss_pred             CCeEEEEC---CCcHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEE
Confidence            34455444   345999999999999999999999874  33345667777887754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=87.05  E-value=3  Score=30.76  Aligned_cols=42  Identities=14%  Similarity=0.195  Sum_probs=35.3

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC--CCEEEEECCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY--DVKLNYVSPP   75 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~--G~~v~~~~P~   75 (99)
                      .++.+ +++|++++.+|-++.  |.+.++..+...  |.+|+++.-.
T Consensus       149 l~~~~i~l~gk~vvVvG~s~i--VG~p~A~lL~~~g~~atVtv~h~~  193 (281)
T 2c2x_A          149 LRRYDISIAGAHVVVIGRGVT--VGRPLGLLLTRRSENATVTLCHTG  193 (281)
T ss_dssp             HHHTTCCCTTCEEEEECCCTT--THHHHHHHHTSTTTCCEEEEECTT
T ss_pred             HHHcCCCCCCCEEEEECCCcH--HHHHHHHHHhcCCCCCEEEEEECc
Confidence            35556 799999999998776  889999999999  8999999643

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=87.04  E-value=1.5  Score=32.63  Aligned_cols=47  Identities=13%  Similarity=0.054  Sum_probs=38.0

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||...+++..++++|++++++-|++. .++.-++.++..|+++...
T Consensus        92 SsGN~g~alA~~a~~~G~~~~i~~p~~~-~~~~k~~~~~~~GA~v~~v  138 (360)
T 2d1f_A           92 STGNTSASAAAYAARAGITCAVLIPQGK-IAMGKLAQAVMHGAKIIQI  138 (360)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEEEECSSC-CCHHHHHHHHHTTCEEEEB
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEEEcCCC-CCHHHHHHHHHcCCEEEEE
Confidence            4556999999999999999999999874 4555567788888887654

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=87.01  E-value=1.6  Score=32.15  Aligned_cols=48  Identities=13%  Similarity=0.046  Sum_probs=38.5

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ..||...+++..++++|++++++-|++. .++.-++.++..|+++...+
T Consensus        86 SsGN~g~alA~~a~~~G~~~~i~~p~~~-~~~~k~~~~~~~GA~v~~v~  133 (352)
T 2zsj_A           86 STGNTSASAAAYAARAGLRAYVLLPKGA-VAIGKLSQAMIYGAKVLAIQ  133 (352)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEEEEEGGG-CCHHHHHHHHHTTCEEEEES
T ss_pred             CCchHHHHHHHHHHhcCCcEEEEECCCC-CCHHHHHHHHHcCCEEEEEC
Confidence            4567999999999999999999999863 45555677888888886553

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=86.88  E-value=1.2  Score=34.30  Aligned_cols=52  Identities=13%  Similarity=0.041  Sum_probs=40.2

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      +|+-...+   |...|++..++++|++++++-|++  .++.-++.++..|+++..++
T Consensus       162 ~vv~aSsG---Nhg~avA~~aa~~G~~~~Ivmp~~--~~~~k~~~~r~~GA~Vv~v~  213 (442)
T 3ss7_X          162 SIAVGSTG---NLGLSIGIMSARIGFKVTVHMSAD--ARAWKKAKLRSHGVTVVEYE  213 (442)
T ss_dssp             EEEEECSS---HHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEES
T ss_pred             EEEEECCC---HHHHHHHHHHHHhCCcEEEEECCC--CCHHHHHHHHHCCCEEEEEC
Confidence            55544443   489999999999999999999986  45556677888898886653

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=86.85  E-value=1.1  Score=32.93  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+..+|++|....|.
T Consensus       139 ~l~g~~vgIIG~G---~IG~~~A~~l~~~G~~V~~~d~~  174 (313)
T 2ekl_A          139 ELAGKTIGIVGFG---RIGTKVGIIANAMGMKVLAYDIL  174 (313)
T ss_dssp             CCTTCEEEEESCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEeeC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            5889999999975   49999999999999999988874

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=86.84  E-value=2.1  Score=32.36  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             HHhc--CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          33 EEMG--RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        33 e~~g--~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +.+|  +++|++|+++|-+   +|....+..+..+|++|+++-
T Consensus       164 ~~~G~~~L~GktV~V~G~G---~VG~~~A~~L~~~GakVvv~D  203 (364)
T 1leh_A          164 EAFGSDSLEGLAVSVQGLG---NVAKALCKKLNTEGAKLVVTD  203 (364)
T ss_dssp             HHHSSCCCTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEEC
T ss_pred             hhccccCCCcCEEEEECch---HHHHHHHHHHHHCCCEEEEEc
Confidence            3357  6999999999974   399999999999999988553

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=86.81  E-value=1.4  Score=32.80  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=39.5

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      +|+-.+.   ||..++++.+++++|++++++-|+.  .++.-.+.++..|+++...
T Consensus       110 ~vv~ass---GN~g~a~A~aa~~~G~~~~iv~P~~--~~~~k~~~~~~~GA~V~~v  160 (366)
T 3iau_A          110 GVITASA---GNHAQGVALAGQRLNCVAKIVMPTT--TPQIKIDAVRALGGDVVLY  160 (366)
T ss_dssp             CEEEECS---SHHHHHHHHHHHHTTCCEEEEECTT--CCHHHHHHHHHTTCEEEEC
T ss_pred             EEEEeCC---CHHHHHHHHHHHHhCCceEEEeCCC--CCHHHHHHHHHCCCeEEEE
Confidence            4544444   4599999999999999999999985  4565667788888887654

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=86.78  E-value=1.1  Score=34.72  Aligned_cols=53  Identities=15%  Similarity=0.132  Sum_probs=41.1

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .+|+-.+.   ||.+++++.+++++|++++++-|+.  .++.-++.++..|+++...+
T Consensus       176 ~~VV~aSs---GNhG~AlA~aAa~~Gl~~~IvmP~~--~s~~k~~~~r~~GAeVv~v~  228 (430)
T 4aec_A          176 SVLVEPTS---GNTGIGLAFIAASRGYRLILTMPAS--MSMERRVLLKAFGAELVLTD  228 (430)
T ss_dssp             CEEEEECS---SHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             cEEEEECC---CHHHHHHHHHHHHhCCEEEEEEcCC--CCHHHHHHHHHCCCEEEEEC
Confidence            34444444   3599999999999999999999987  45666677888899887653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=86.75  E-value=2.2  Score=33.28  Aligned_cols=36  Identities=14%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      ..+.|++|+++|-+   ++.++.+..+..||++|.++-|
T Consensus       207 ~~L~GktVgIiG~G---~IG~~vA~~Lka~Ga~Viv~D~  242 (436)
T 3h9u_A          207 VMIAGKTACVCGYG---DVGKGCAAALRGFGARVVVTEV  242 (436)
T ss_dssp             CCCTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcccCCEEEEEeeC---HHHHHHHHHHHHCCCEEEEECC
Confidence            35899999999954   4999999999999999988776

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=86.71  E-value=1.2  Score=32.94  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             chhHHHHHHHHhhCCCEEEEECCCCCCCC-H-----HHHHHHHhcCCeEEEE
Q psy4411          52 GRTVHSLARLLTLYDVKLNYVSPPNLGMP-E-----SIQEFVASKGKQQEVY   97 (99)
Q Consensus        52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~-~-----~~~~~a~~~g~~~~~~   97 (99)
                      ||.+.+++.+|+++|++++++-|+..... +     .-++.++..|+++..+
T Consensus        92 GN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~  143 (342)
T 4d9b_A           92 SNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMC  143 (342)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEEC
T ss_pred             cHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEE
Confidence            35999999999999999999999776432 1     2345577788887665

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=86.64  E-value=0.94  Score=33.20  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+.   +.++++..+..||++|....|.
T Consensus       119 ~l~g~tvGIIGlG~---IG~~vA~~l~~~G~~V~~~dr~  154 (290)
T 3gvx_A          119 LLYGKALGILGYGG---IGRRVAHLAKAFGMRVIAYTRS  154 (290)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHHHTCEEEEECSS
T ss_pred             eeecchheeeccCc---hhHHHHHHHHhhCcEEEEEecc
Confidence            48899999999854   9999999999999999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=86.38  E-value=2.9  Score=29.12  Aligned_cols=55  Identities=11%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~   95 (99)
                      +.+++++++|.+.   ++-.++..++.+|.+++++.+.. +...+...+.+++.|+.+.
T Consensus       152 ~~~~~v~vvG~g~---~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~~gv~~~  207 (332)
T 3lzw_A          152 FAGRRVAILGGGD---SAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVL  207 (332)
T ss_dssp             GBTCEEEEECSSH---HHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHHSSCEEE
T ss_pred             cCCCEEEEECCCH---hHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhcCCeEEE
Confidence            4678999999754   77888888899999999998743 3345566677888887663

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=86.25  E-value=1.3  Score=32.34  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC------HHHHHHHHhcCCeEEEE
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP------ESIQEFVASKGKQQEVY   97 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~------~~~~~~a~~~g~~~~~~   97 (99)
                      +|+-.|- ..||...+++.+++++|++++++.|+.....      ..-++.++..|+++...
T Consensus        69 ~vv~~Ga-ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~  129 (338)
T 1tzj_A           69 TLVSIGG-IQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV  129 (338)
T ss_dssp             EEEEEEE-TTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEEC
T ss_pred             EEEEcCC-chhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEe
Confidence            4544443 3346999999999999999999999876322      12446677788887654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=86.22  E-value=1.2  Score=33.15  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       137 ~l~g~tvGIIGlG~---IG~~vA~~l~~~G~~V~~~dr~  172 (324)
T 3hg7_A          137 GLKGRTLLILGTGS---IGQHIAHTGKHFGMKVLGVSRS  172 (324)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccceEEEEEECH---HHHHHHHHHHhCCCEEEEEcCC
Confidence            58899999999864   9999999999999999998764

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=86.15  E-value=1.6  Score=33.78  Aligned_cols=58  Identities=19%  Similarity=0.101  Sum_probs=42.6

Q ss_pred             hcCCC-CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          35 MGRVN-GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        35 ~g~l~-g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .|.++ +.+|+-...+   |...+++.+++++|++++++-|+.  .++.-++.++..|+.+...
T Consensus       155 ~G~l~~g~tVV~aSsG---N~G~AlA~aaa~~Gi~~~IvmP~~--~s~~k~~~l~~~GAeVv~v  213 (435)
T 1jbq_A          155 DGTLKPGDTIIEPTSG---NTGIGLALAAAVRGYRCIIVMPEK--MSSEKVDVLRALGAEIVRT  213 (435)
T ss_dssp             HTCSCTTCEEEEECSS---HHHHHHHHHHHHHTCEEEEEECSC--CCHHHHHHHHHTTCEEEEC
T ss_pred             cCCCCCCCEEEEeCCC---HHHHHHHHHHHHcCCeEEEEeCCC--CCHHHHHHHHhCCCEEEEe
Confidence            45444 3455444443   489999999999999999999987  4555667788888888654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=86.05  E-value=1.1  Score=32.84  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+..+|+++....|.
T Consensus       141 ~l~g~~vgIIG~G---~IG~~~A~~l~~~G~~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMG---RIGQAVAKRALAFGMRVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            4888999999975   49999999999999999988774

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=86.02  E-value=1.1  Score=33.04  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+.|++|+++|=++   +.++++..+..+|++|....|
T Consensus       143 ~l~g~~vgIIG~G~---IG~~~A~~l~~~G~~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGS---IGQALAKRAQGFDMDIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEECS
T ss_pred             CCCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECC
Confidence            48899999999754   999999999999999998877

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=86.02  E-value=1  Score=34.19  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+.   +.++++..+..||++|....|.
T Consensus       173 ~l~gktvGIIGlG~---IG~~vA~~l~~fG~~V~~~d~~  208 (365)
T 4hy3_A          173 LIAGSEIGIVGFGD---LGKALRRVLSGFRARIRVFDPW  208 (365)
T ss_dssp             CSSSSEEEEECCSH---HHHHHHHHHTTSCCEEEEECSS
T ss_pred             ccCCCEEEEecCCc---ccHHHHHhhhhCCCEEEEECCC
Confidence            47899999999754   9999999999999999998874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=85.99  E-value=0.84  Score=33.92  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .+.|+||+++|=+   ++.++++..+..||++|....|..
T Consensus       142 ~l~g~tvGIIG~G---~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          142 GLDNATVGFLGMG---AIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             CSTTCEEEEECCS---HHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             ccCCCEEEEEeeC---HHHHHHHHHHHHCCCEEEEECCCC
Confidence            3789999999975   499999999999999999988743

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=85.69  E-value=1.2  Score=33.53  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+.|+||+++|=+.   +.++++..+..||++|....|
T Consensus       157 ~l~g~tvGIIGlG~---IG~~vA~~l~~~G~~V~~~d~  191 (352)
T 3gg9_A          157 VLKGQTLGIFGYGK---IGQLVAGYGRAFGMNVLVWGR  191 (352)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECS
T ss_pred             cCCCCEEEEEeECH---HHHHHHHHHHhCCCEEEEECC
Confidence            48899999999754   999999999999999998877

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=85.66  E-value=0.68  Score=35.36  Aligned_cols=39  Identities=23%  Similarity=0.183  Sum_probs=33.4

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      ++++ .+.|+||+++|=+   ++.++++..+..||++|....|
T Consensus       108 r~~~~~l~g~tvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~  147 (380)
T 2o4c_A          108 EVRGADLAERTYGVVGAG---QVGGRLVEVLRGLGWKVLVCDP  147 (380)
T ss_dssp             HHHTCCGGGCEEEEECCS---HHHHHHHHHHHHTTCEEEEECH
T ss_pred             hhhhcccCCCEEEEEeCC---HHHHHHHHHHHHCCCEEEEEcC
Confidence            3445 6999999999954   4999999999999999998876

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=85.56  E-value=1.2  Score=33.03  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+..+|++|....|.
T Consensus       143 ~l~g~~vgIIG~G---~iG~~vA~~l~~~G~~V~~~d~~  178 (333)
T 2d0i_A          143 SLYGKKVGILGMG---AIGKAIARRLIPFGVKLYYWSRH  178 (333)
T ss_dssp             CSTTCEEEEECCS---HHHHHHHHHHGGGTCEEEEECSS
T ss_pred             CCCcCEEEEEccC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            5899999999975   49999999999999999988774

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=85.40  E-value=0.96  Score=33.96  Aligned_cols=36  Identities=14%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+.   +.++++..+..||++|....|.
T Consensus       145 ~l~gktvgIiGlG~---IG~~vA~~l~~~G~~V~~~d~~  180 (343)
T 2yq5_A          145 EIYNLTVGLIGVGH---IGSAVAEIFSAMGAKVIAYDVA  180 (343)
T ss_dssp             CGGGSEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCCeEEEEecCH---HHHHHHHHHhhCCCEEEEECCC
Confidence            37899999999754   9999999999999999998874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=85.32  E-value=3.5  Score=28.63  Aligned_cols=54  Identities=11%  Similarity=0.034  Sum_probs=40.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHh-cCCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVAS-KGKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~-~g~~~   94 (99)
                      ..+++|+++|.+.   ++-.++..++++|.+++++.+.. +..++++.+.+.+ .|+++
T Consensus       141 ~~~~~v~VvG~G~---~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v  196 (311)
T 2q0l_A          141 YKNKEVAVLGGGD---TAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEF  196 (311)
T ss_dssp             GTTSEEEEECCSH---HHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEE
Confidence            3578999999764   77888888899999999998854 4456677777764 56544

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=85.31  E-value=1.1  Score=33.24  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+   ++.++++..+..||++|....|.
T Consensus       142 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~d~~  177 (333)
T 1dxy_A          142 ELGQQTVGVMGTG---HIGQVAIKLFKGFGAKVIAYDPY  177 (333)
T ss_dssp             CGGGSEEEEECCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEECcC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            4889999999974   49999999999999999998874

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=85.27  E-value=1.2  Score=33.04  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       134 ~l~gktvGIiGlG~---IG~~vA~~l~~~G~~V~~~dr~  169 (324)
T 3evt_A          134 TLTGQQLLIYGTGQ---IGQSLAAKASALGMHVIGVNTT  169 (324)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCeEEEECcCH---HHHHHHHHHHhCCCEEEEECCC
Confidence            58899999999864   9999999999999999988763

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=85.22  E-value=1.3  Score=33.17  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      ++.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       165 ~l~g~tvGIIG~G~---IG~~vA~~l~~~G~~V~~~d~~  200 (347)
T 1mx3_A          165 RIRGETLGIIGLGR---VGQAVALRAKAFGFNVLFYDPY  200 (347)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEECTT
T ss_pred             CCCCCEEEEEeECH---HHHHHHHHHHHCCCEEEEECCC
Confidence            58999999999754   9999999999999999988874

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=85.18  E-value=1.7  Score=32.23  Aligned_cols=52  Identities=12%  Similarity=-0.008  Sum_probs=40.0

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .+|+-...+   |...+++.+|+++|++.+++-|+.  .++.-++.++..|+++.+.
T Consensus        88 ~~Vv~aSsG---N~g~alA~~aa~~G~~~~IvmP~~--~~~~k~~~~~~~GA~Vv~v  139 (344)
T 3vc3_A           88 TTLIEPTSG---NMGISMAFMAAMKGYKMVLTMPSY--TSLERRVTMRAFGAELILT  139 (344)
T ss_dssp             CEEEEECSS---HHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEeCCc---HHHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHHcCCEEEEE
Confidence            345544443   489999999999999999999986  4555567788889988765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=85.13  E-value=1.5  Score=32.43  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|-+   ++.++++..+..+|++|....|.
T Consensus       147 ~l~g~~vgIIG~G---~iG~~iA~~l~~~G~~V~~~d~~  182 (334)
T 2dbq_A          147 DVYGKTIGIIGLG---RIGQAIAKRAKGFNMRILYYSRT  182 (334)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEccC---HHHHHHHHHHHhCCCEEEEECCC
Confidence            4889999999964   49999999999999999988874

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=85.09  E-value=1.3  Score=33.10  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+   ++.++++..+..||++|....|.
T Consensus       162 ~l~g~tvgIIGlG---~IG~~vA~~l~~~G~~V~~~d~~  197 (335)
T 2g76_A          162 ELNGKTLGILGLG---RIGREVATRMQSFGMKTIGYDPI  197 (335)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCcCEEEEEeEC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            5899999999974   49999999999999999988873

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=85.07  E-value=1.3  Score=33.28  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       168 ~l~gktiGIIGlG~---IG~~vA~~l~~~G~~V~~~dr~  203 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQ---IGRALASRAEAFGMSVRYWNRS  203 (340)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEECSS
T ss_pred             cccCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEcCC
Confidence            58899999999854   9999999999999999988763

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=85.00  E-value=1.3  Score=33.30  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+   ++.++++..+..||++|....|.
T Consensus       170 ~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~dr~  205 (345)
T 4g2n_A          170 GLTGRRLGIFGMG---RIGRAIATRARGFGLAIHYHNRT  205 (345)
T ss_dssp             CCTTCEEEEESCS---HHHHHHHHHHHTTTCEEEEECSS
T ss_pred             ccCCCEEEEEEeC---hhHHHHHHHHHHCCCEEEEECCC
Confidence            4889999999975   49999999999999999998874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.90  E-value=1.2  Score=31.95  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++++++|-+   ++.+..+..+..+|+++.++.|.
T Consensus       152 ~l~g~~v~IiG~G---~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLG---RVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCS---HHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEeeC---HHHHHHHHHHHhCCCEEEEEECC
Confidence            6899999999964   49999999999999999888773

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=84.77  E-value=3.9  Score=31.29  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCCC-CC--HHHHHHHHhcCCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNLG-MP--ESIQEFVASKGKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~-~~--~~~~~~a~~~g~~~~   95 (99)
                      ..|++|+++|.++   ++-..+..+.++|. +|+++...... ++  +.-++.+++.|+++.
T Consensus       262 ~~gk~VvVIGgG~---~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~  320 (456)
T 2vdc_G          262 AAGKHVVVLGGGD---TAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFI  320 (456)
T ss_dssp             CCCSEEEEECSSH---HHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEECCCh---hHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEE
Confidence            5689999999864   88888888889997 69999875432 32  333566788887764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=84.58  E-value=3.4  Score=29.07  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHh-cCCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVAS-KGKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~-~g~~~   94 (99)
                      ..+++++++|.+.   ++-.++..++.+|.+++++.+.. +.+++.+.+.+.+ .|+++
T Consensus       150 ~~~~~v~VvG~G~---~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i  205 (325)
T 2q7v_A          150 YKGKKVVVIGGGD---AAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKF  205 (325)
T ss_dssp             GTTCEEEEECCSH---HHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceE
Confidence            4578999999864   77788888889999999999754 4456667676654 46554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=84.56  E-value=3.3  Score=28.77  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=39.8

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHHHHh-cCCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEFVAS-KGKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~a~~-~g~~~   94 (99)
                      ..+++|+++|.+.   ++-.++..++.+|.+++++.+. .+..++.+.+.+++ .|+++
T Consensus       142 ~~~~~v~VvG~G~---~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v  197 (310)
T 1fl2_A          142 FKGKRVAVIGGGN---SGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDI  197 (310)
T ss_dssp             GBTCEEEEECCSH---HHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEE
Confidence            4578999999864   7777888888899999999874 33445666666776 46554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=84.47  E-value=1.4  Score=33.68  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.++++..+..|||+|...-|.
T Consensus       142 el~gktlGiIGlG~---IG~~vA~~l~~~G~~V~~~d~~  177 (404)
T 1sc6_A          142 EARGKKLGIIGYGH---IGTQLGILAESLGMYVYFYDIE  177 (404)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCCEEEEEeECH---HHHHHHHHHHHCCCEEEEEcCC
Confidence            48999999999854   9999999999999999998874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=84.38  E-value=3.1  Score=32.42  Aligned_cols=60  Identities=25%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             HHhcCCC-CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          33 EEMGRVN-GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        33 e~~g~l~-g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ++.|.++ |.+|+-.   ..||.+.+++.+|+++|++++++-|+.  .++.-++.++..|+.+..+
T Consensus       105 ~~~g~~~~g~~vv~~---ssGN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~v~~~  165 (527)
T 3pc3_A          105 EEQGLLKPGYTIIEP---TSGNTGIGLAMACAVKGYKCIIVMPEK--MSNEKVSALRTLGAKIIRT  165 (527)
T ss_dssp             HHHTCCCTTCEEEEE---CSSHHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEE
T ss_pred             HHcCCCCCCCEEEEe---CCCHHHHHHHHHHHHhCCeEEEEEcCC--CCHHHHHHHHHCCCEEEEe
Confidence            3345443 3455432   344599999999999999999999985  5566667788889888665

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=84.32  E-value=1.6  Score=32.47  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+. .+|++|....|.
T Consensus       160 ~l~g~~vgIIG~G---~IG~~vA~~l~~~~G~~V~~~d~~  196 (348)
T 2w2k_A          160 NPRGHVLGAVGLG---AIQKEIARKAVHGLGMKLVYYDVA  196 (348)
T ss_dssp             CSTTCEEEEECCS---HHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCCEEEEEEEC---HHHHHHHHHHHHhcCCEEEEECCC
Confidence            4889999999974   49999999999 999999988774

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=84.30  E-value=4.2  Score=30.16  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=40.6

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC----CCHHH----HHHHHhcCCeEEE
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG----MPESI----QEFVASKGKQQEV   96 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~----~~~~~----~~~a~~~g~~~~~   96 (99)
                      .+++++++|.+.   +.-.++..++++|.+|+++.+....    +++++    .+.+++.|+++..
T Consensus       144 ~~~~vvViGgG~---~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~  206 (408)
T 2gqw_A          144 PQSRLLIVGGGV---IGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF  206 (408)
T ss_dssp             TTCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCeEEEECCCH---HHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEe
Confidence            478999999864   7888888899999999999875432    34544    3446677877654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=84.25  E-value=3.7  Score=31.26  Aligned_cols=55  Identities=11%  Similarity=0.032  Sum_probs=40.2

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHHH----HHHHhcCCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~~----~~a~~~g~~~~   95 (99)
                      ..+++++++|.+.   +.-.++..++.+|.+|+++.+...    .+++++.    +.+++.|+++.
T Consensus       192 ~~~~~vvVIGgG~---ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~  254 (490)
T 2bc0_A          192 KDIKRVAVVGAGY---IGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLA  254 (490)
T ss_dssp             TTCCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             cCCceEEEECCCH---HHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEE
Confidence            4578999999864   888888889999999999986433    2345543    44567787664

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=84.11  E-value=0.83  Score=31.46  Aligned_cols=82  Identities=12%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             HHHHhhccCEEEEccCCchhH---------------------HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEE
Q psy4411          11 VAVLSGYADVIVLRHPEPGAV---------------------KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKL   69 (99)
Q Consensus        11 a~vls~y~D~iv~R~~~~~~~---------------------~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v   69 (99)
                      |+-+..=+|+|+.|...-..+                     ....... +.+|+++|-.+   +...+-.++..||+++
T Consensus        45 a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~-~~kIavvg~~~---~~~~~~~~~~ll~~~i  120 (196)
T 2q5c_A           45 AFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRF-GNELALIAYKH---SIVDKHEIEAMLGVKI  120 (196)
T ss_dssp             HHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGG-CSEEEEEEESS---CSSCHHHHHHHHTCEE
T ss_pred             HHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhh-CCcEEEEeCcc---hhhHHHHHHHHhCCce
Confidence            333433478998887654444                     1122222 34999999744   5666777888899998


Q ss_pred             EEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          70 NYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        70 ~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      ........+=-+..++++++.|.+.-+
T Consensus       121 ~~~~~~~~~e~~~~i~~l~~~G~~vvV  147 (196)
T 2q5c_A          121 KEFLFSSEDEITTLISKVKTENIKIVV  147 (196)
T ss_dssp             EEEEECSGGGHHHHHHHHHHTTCCEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence            888775543334567778888876643

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=84.08  E-value=1.2  Score=32.93  Aligned_cols=36  Identities=17%  Similarity=0.021  Sum_probs=31.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=+   ++.++++..+..||++|....|.
T Consensus       143 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~d~~  178 (331)
T 1xdw_A          143 EVRNCTVGVVGLG---RIGRVAAQIFHGMGATVIGEDVF  178 (331)
T ss_dssp             CGGGSEEEEECCS---HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEECcC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            3788999999974   49999999999999999988763

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=83.94  E-value=3.5  Score=28.49  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhc-CCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASK-GKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~-g~~~   94 (99)
                      ..+++++++|.+.   +.-.++..+..+|.+++++.+.. +..++++.+.+.+. |+++
T Consensus       152 ~~~~~v~vvG~G~---~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~  207 (323)
T 3f8d_A          152 FKNRVVAVIGGGD---SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEF  207 (323)
T ss_dssp             GTTCEEEEECCSH---HHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEE
Confidence            5678999999754   77778888888999999999854 34456676766654 6554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=83.84  E-value=1.5  Score=32.88  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       161 ~l~gktvGIIG~G~---IG~~vA~~l~~~G~~V~~~dr~  196 (351)
T 3jtm_A          161 DLEGKTIGTVGAGR---IGKLLLQRLKPFGCNLLYHDRL  196 (351)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHGGGCCEEEEECSS
T ss_pred             cccCCEEeEEEeCH---HHHHHHHHHHHCCCEEEEeCCC
Confidence            48999999999754   9999999999999999888764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=83.80  E-value=1.3  Score=32.85  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=++   +.++++..+..||++|....|.
T Consensus       143 ~l~g~~vgIiG~G~---IG~~~A~~l~~~G~~V~~~d~~  178 (333)
T 1j4a_A          143 EVRDQVVGVVGTGH---IGQVFMQIMEGFGAKVITYDIF  178 (333)
T ss_dssp             CGGGSEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCCCEEEEEccCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            47889999999754   9999999999999999988874

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=83.33  E-value=0.72  Score=32.75  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             cCEEEEccCCchhH---------------------HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          18 ADVIVLRHPEPGAV---------------------KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        18 ~D~iv~R~~~~~~~---------------------~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      +|+|+.|...-..+                     ....... +.+|++||-.+   +...+-.++..||+++.......
T Consensus        64 ~dVIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~-~~kIavVg~~~---~~~~~~~i~~ll~~~i~~~~~~~  139 (225)
T 2pju_A           64 CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAKAGKL-TSSIGVVTYQE---TIPALVAFQKTFNLRLDQRSYIT  139 (225)
T ss_dssp             CSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHTTCT-TSCEEEEEESS---CCHHHHHHHHHHTCCEEEEEESS
T ss_pred             CeEEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHHHHhh-CCcEEEEeCch---hhhHHHHHHHHhCCceEEEEeCC
Confidence            78999997755544                     1222232 35999999744   67788888899999988877654


Q ss_pred             CCCCHHHHHHHHhcCCeEEE
Q psy4411          77 LGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        77 ~~~~~~~~~~a~~~g~~~~~   96 (99)
                      .+=-+..++++++.|.+.-+
T Consensus       140 ~ee~~~~i~~l~~~G~~vVV  159 (225)
T 2pju_A          140 EEDARGQINELKANGTEAVV  159 (225)
T ss_dssp             HHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEE
Confidence            43234556777888876643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=83.28  E-value=7  Score=30.48  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=47.0

Q ss_pred             HHHhc---CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          32 KEEMG---RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        32 ~e~~g---~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      +|+|+   +|+|.+|+-+=...-  -.--|++.+..+|++|+.++..-|...+++.+.+.+.|+.+
T Consensus        32 r~~~~~~~pl~g~ri~~~lh~~~--~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~gi~v   95 (436)
T 3h9u_A           32 RREYGPSKPLKGAKIAGCLHMTM--QTAVLIETLVELGAEVRWASCNIFSTQDHAAAAIAKRGIPV   95 (436)
T ss_dssp             HHHHTTTCTTTTCEEEEESCCSH--HHHHHHHHHHHTTCEEEEECSSTTTCCHHHHHHHHHTTCCE
T ss_pred             HHHHhccCCCCCCEEEEEeccHH--HHHHHHHHHHHcCCEEEEecCCCCCCcHHHHHHHHhcCCeE
Confidence            55554   599999998766442  33457777888999999999888988888888777778654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=83.13  E-value=1.5  Score=32.44  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....+.
T Consensus       136 ~l~g~tvGIiG~G~---IG~~vA~~l~~~G~~V~~~dr~  171 (315)
T 3pp8_A          136 TREEFSVGIMGAGV---LGAKVAESLQAWGFPLRCWSRS  171 (315)
T ss_dssp             CSTTCCEEEECCSH---HHHHHHHHHHTTTCCEEEEESS
T ss_pred             CcCCCEEEEEeeCH---HHHHHHHHHHHCCCEEEEEcCC
Confidence            48899999999864   9999999999999999988653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=83.11  E-value=5  Score=27.96  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCCHHHHHHHHhc-CCeEE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMPESIQEFVASK-GKQQE   95 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~~~~~~a~~~-g~~~~   95 (99)
                      ..+++++++|-+.   ++-.++..++.+|.+++++.+... ...+.+.+.+.+. |+++.
T Consensus       171 ~~~~~v~vvG~G~---~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~  227 (338)
T 3itj_A          171 FRNKPLAVIGGGD---SACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEIL  227 (338)
T ss_dssp             GTTSEEEEECSSH---HHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEe
Confidence            5678999999754   788888888999999999998543 3456667777665 76553

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.88  E-value=1.7  Score=31.28  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++++++|-+   ++.+..+..+..+|++|++..|.
T Consensus       154 ~l~g~~v~IiG~G---~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLG---RTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCS---HHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEccc---HHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999964   49999999999999999988773

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=82.60  E-value=4.3  Score=28.52  Aligned_cols=54  Identities=11%  Similarity=0.052  Sum_probs=38.5

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHH----hcCCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVA----SKGKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~----~~g~~~   94 (99)
                      +.+++|+++|.+.   ++-.++..++..|.+++++.+.. +.+.++..+.++    +.|+++
T Consensus       150 ~~~~~v~viG~G~---~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v  208 (335)
T 2zbw_A          150 FQGKRVLIVGGGD---SAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEV  208 (335)
T ss_dssp             GTTCEEEEECSSH---HHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEE
T ss_pred             cCCCEEEEECCCH---HHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEE
Confidence            4678999999864   77788888888999999998854 434455444443    446654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=82.32  E-value=3.6  Score=30.59  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+++|++++.+|-++.  +.+.++..+...|++|+++.-
T Consensus       161 i~l~Gk~vvVIG~s~i--VG~p~A~lL~~~gAtVtv~~~  197 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNI--VGAPVAALLMKENATVTIVHS  197 (300)
T ss_dssp             CCCTTCEEEEECCCTT--THHHHHHHHHHTTCEEEEECT
T ss_pred             CCCCCCEEEEECCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence            4799999999998776  899999999999999999874

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=82.25  E-value=8  Score=30.47  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             HHHhc---CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          32 KEEMG---RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        32 ~e~~g---~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      +|+|+   +|+|.+|+-+=...-  -.--|++.+..+|++|+.++..-|...+++.+.+.+.|+.+
T Consensus        34 r~~~~~~kPl~G~rI~~~lH~t~--~TavlietL~a~GAev~~~~cN~~STqd~~aaal~~~gi~v   97 (464)
T 3n58_A           34 REEFGKSQPLKGARISGSLHMTI--QTAVLIETLKVLGAEVRWASCNIFSTQDHAAAAIAATGTPV   97 (464)
T ss_dssp             HHHHTTTCTTTTCEEEEESCCSH--HHHHHHHHHHHTTCEEEEECSSTTCCCHHHHHHHHHTTCCE
T ss_pred             HHHHhccCCCCCCEEEEEEecHH--HHHHHHHHHHHcCCeEEEecCCCCCCcHHHHHHHHhcCCeE
Confidence            56664   599999998766442  33467778888999999999988988888887777777654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=82.25  E-value=6.5  Score=27.22  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHH
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQE   85 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~   85 (99)
                      .++++++++|.+.   ++--++..++++|.+|+++.... ..++++...
T Consensus       150 ~~~~~vvViGgG~---ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~  195 (314)
T 4a5l_A          150 FRNKVLMVVGGGD---AAMEEALHLTKYGSKVIILHRRDAFRASKTMQE  195 (314)
T ss_dssp             GTTSEEEEECSSH---HHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHH
T ss_pred             cCCCeEEEECCCh---HHHHHHHHHHHhCCeeeeecccccccccchhhh
Confidence            5678999999865   88899999999999999998533 334444433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=82.24  E-value=1.7  Score=34.27  Aligned_cols=36  Identities=8%  Similarity=0.046  Sum_probs=32.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++++++|=+   ++.++.+..+..||++|++..|.
T Consensus       254 ~l~GktVgIIG~G---~IG~~vA~~l~~~G~~Viv~d~~  289 (479)
T 1v8b_A          254 LISGKIVVICGYG---DVGKGCASSMKGLGARVYITEID  289 (479)
T ss_dssp             CCTTSEEEEECCS---HHHHHHHHHHHHHTCEEEEECSC
T ss_pred             ccCCCEEEEEeeC---HHHHHHHHHHHhCcCEEEEEeCC
Confidence            6999999999953   59999999999999999998874

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=82.16  E-value=1.6  Score=32.49  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++|+++|=++   +.+.++..+..+|++|.+..|.
T Consensus       161 ~l~g~~vgIIG~G~---iG~~vA~~l~~~G~~V~~~dr~  196 (333)
T 3ba1_A          161 KFSGKRVGIIGLGR---IGLAVAERAEAFDCPISYFSRS  196 (333)
T ss_dssp             CCTTCCEEEECCSH---HHHHHHHHHHTTTCCEEEECSS
T ss_pred             ccCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCC
Confidence            58899999999754   9999999999999999988764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=82.15  E-value=2  Score=33.21  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.++++..+..|||+|....|.
T Consensus       153 el~gktvGIIGlG~---IG~~vA~~l~~~G~~V~~yd~~  188 (416)
T 3k5p_A          153 EVRGKTLGIVGYGN---IGSQVGNLAESLGMTVRYYDTS  188 (416)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCCEEEEEeeCH---HHHHHHHHHHHCCCEEEEECCc
Confidence            48899999999754   9999999999999999998874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=81.74  E-value=2.1  Score=29.80  Aligned_cols=59  Identities=17%  Similarity=0.235  Sum_probs=40.5

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      -+++|+++.+.|-..-  +.+.++..++..|.+|++++-..-+..+.+.+.+++.|.++..
T Consensus        25 m~l~~k~vlITGas~g--IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~   83 (271)
T 4iin_A           25 MQFTGKNVLITGASKG--IGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAV   83 (271)
T ss_dssp             CCCSCCEEEETTCSSH--HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCEEEEECCCcH--HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEE
Confidence            4588999999997654  9999999999999999888753222222333444455555443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=81.71  E-value=1.6  Score=32.19  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=+   ++.+.++..+..+|++|....|.
T Consensus       152 ~l~g~~vgIIG~G---~iG~~iA~~l~~~G~~V~~~d~~  187 (330)
T 2gcg_A          152 GLTQSTVGIIGLG---RIGQAIARRLKPFGVQRFLYTGR  187 (330)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHGGGTCCEEEEESS
T ss_pred             CCCCCEEEEECcC---HHHHHHHHHHHHCCCEEEEECCC
Confidence            4789999999974   39999999999999999888763

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=81.66  E-value=2.2  Score=31.36  Aligned_cols=49  Identities=14%  Similarity=0.124  Sum_probs=36.0

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ   93 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~   93 (99)
                      +++.+|+++|-++   +..+++..+...|.++++..+..    +...+.+++.|..
T Consensus        14 l~~~~I~IIG~G~---mG~alA~~L~~~G~~V~~~~~~~----~~~~~~a~~~G~~   62 (338)
T 1np3_A           14 IQGKKVAIIGYGS---QGHAHACNLKDSGVDVTVGLRSG----SATVAKAEAHGLK   62 (338)
T ss_dssp             HHTSCEEEECCSH---HHHHHHHHHHHTTCCEEEECCTT----CHHHHHHHHTTCE
T ss_pred             hcCCEEEEECchH---HHHHHHHHHHHCcCEEEEEECCh----HHHHHHHHHCCCE
Confidence            6678999999754   99999999999999988877642    2223445555543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=81.56  E-value=2  Score=32.80  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|.
T Consensus       188 ~l~gktvGIIGlG~---IG~~vA~~l~a~G~~V~~~d~~  223 (393)
T 2nac_A          188 DLEAMHVGTVAAGR---IGLAVLRRLAPFDVHLHYTDRH  223 (393)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHGGGTCEEEEECSS
T ss_pred             cCCCCEEEEEeECH---HHHHHHHHHHhCCCEEEEEcCC
Confidence            48999999999854   9999999999999999988764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=81.49  E-value=6.9  Score=29.21  Aligned_cols=54  Identities=7%  Similarity=-0.010  Sum_probs=39.3

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHHH----HHHHhcCCeEE
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~~----~~a~~~g~~~~   95 (99)
                      .+.+++++|.+.   +.-.++..++++|.+++++.+...    .+++++.    +.+++.|+++.
T Consensus       148 ~~~~vvIiG~G~---~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~  209 (447)
T 1nhp_A          148 EVNNVVVIGSGY---IGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIA  209 (447)
T ss_dssp             TCCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEE
T ss_pred             CCCeEEEECCCH---HHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEE
Confidence            678999999865   788888999999999999976432    2345543    34556776654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=81.30  E-value=3.8  Score=30.24  Aligned_cols=38  Identities=13%  Similarity=0.085  Sum_probs=33.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+++|++++.+|-++.  +.+.++.++...|++|+++.-.
T Consensus       157 i~l~Gk~vvVIG~s~i--VG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          157 IKTEGAYAVVVGASNV--VGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             CCCTTCEEEEECCCTT--THHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCEEEEECCCch--hHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999998776  8999999999999999998643

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=81.29  E-value=2.4  Score=33.66  Aligned_cols=42  Identities=17%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      |.+++++.+|+++|++.+++-|++.  ++.-++.++..|+.+..
T Consensus        89 Nhg~avA~aa~~lGi~~~IvmP~~~--p~~Kv~~~r~~GAeVvl  130 (514)
T 1tdj_A           89 NHAQGVAFSSARLGVKALIVMPTAT--ADIKVDAVRGFGGEVLL  130 (514)
T ss_dssp             SSHHHHHHHHHHTTCCEEEECCSSC--CHHHHHHHHHHSCEEEC
T ss_pred             HHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHCCCEEEE
Confidence            4899999999999999999999873  44555667777887754

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=81.28  E-value=4.2  Score=31.76  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +++| +++|++|++.|.++   |....+..+..+|.+++-++
T Consensus       227 ~~~g~~l~g~~vaVqGfGn---VG~~~a~~L~e~GakvVavs  265 (440)
T 3aog_A          227 EKIGLQVEGARVAIQGFGN---VGNAAARAFHDHGARVVAVQ  265 (440)
T ss_dssp             HHHTCCSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred             HhcCCCccCCEEEEeccCH---HHHHHHHHHHHCCCEEEEEE
Confidence            3455 68999999999754   99999999999999998444

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=81.28  E-value=1.3  Score=33.85  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      .+.|+||+++|=++   +.++++..+..||++|....|
T Consensus       116 ~l~gktvGIIGlG~---IG~~vA~~l~a~G~~V~~~d~  150 (381)
T 3oet_A          116 SLRDRTIGIVGVGN---VGSRLQTRLEALGIRTLLCDP  150 (381)
T ss_dssp             CGGGCEEEEECCSH---HHHHHHHHHHHTTCEEEEECH
T ss_pred             ccCCCEEEEEeECH---HHHHHHHHHHHCCCEEEEECC
Confidence            69999999999754   999999999999999999876

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=81.14  E-value=3.9  Score=30.19  Aligned_cols=38  Identities=11%  Similarity=0.098  Sum_probs=33.6

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+++|++++.+|-++.  +.+.++.++...|++|+++.-.
T Consensus       156 i~l~Gk~vvVvGrs~i--VG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNI--VGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             CCCTTCEEEEECCCTT--THHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCEEEEECCCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence            3699999999998776  8999999999999999999743

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=80.91  E-value=5.5  Score=28.30  Aligned_cols=36  Identities=11%  Similarity=0.079  Sum_probs=28.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      +.+++|+++|-+.   ++-.++..++.+|.+|+++.+..
T Consensus       164 ~~~~~vvVvG~G~---~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          164 FNKGQYVVIGGNE---SGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             SCSSEEEEECCSH---HHHHHHHHHHHTTCEEEEECC--
T ss_pred             cCCCEEEEECCCc---CHHHHHHHHHhcCCeEEEEecCC
Confidence            5678999999754   77788888889999999998743

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=80.60  E-value=8.2  Score=26.92  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411          33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA   88 (99)
Q Consensus        33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~   88 (99)
                      ++.+.++|+++.+.|-..++-+.+.++..+++.|.+|.+++-..   .++.++.+.
T Consensus        19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~---~~~~~~~l~   71 (280)
T 3nrc_A           19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ---FKDRVEKLC   71 (280)
T ss_dssp             ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT---CHHHHHHHH
T ss_pred             CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch---HHHHHHHHH
Confidence            34567899999999965333599999999999999999887644   334444443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=80.27  E-value=2.9  Score=31.96  Aligned_cols=34  Identities=9%  Similarity=-0.137  Sum_probs=29.5

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      +.+.||+++|-+   ++....+..+..+|++|+++-+
T Consensus       182 v~~~kV~ViG~G---~iG~~aa~~a~~lGa~V~v~D~  215 (381)
T 3p2y_A          182 VKPASALVLGVG---VAGLQALATAKRLGAKTTGYDV  215 (381)
T ss_dssp             ECCCEEEEESCS---HHHHHHHHHHHHHTCEEEEECS
T ss_pred             cCCCEEEEECch---HHHHHHHHHHHHCCCEEEEEeC
Confidence            578999999985   4999999999999999887655

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=80.20  E-value=2.3  Score=31.94  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~   75 (99)
                      .+.|+||+++|=+   ++.++++..+..||++ |....+.
T Consensus       161 ~l~g~tvgIIG~G---~IG~~vA~~l~~~G~~~V~~~d~~  197 (364)
T 2j6i_A          161 DIEGKTIATIGAG---RIGYRVLERLVPFNPKELLYYDYQ  197 (364)
T ss_dssp             CSTTCEEEEECCS---HHHHHHHHHHGGGCCSEEEEECSS
T ss_pred             cCCCCEEEEECcC---HHHHHHHHHHHhCCCcEEEEECCC
Confidence            5899999999975   4999999999999997 9888763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=80.14  E-value=5.5  Score=27.91  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHH-HhcCCeE
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFV-ASKGKQQ   94 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a-~~~g~~~   94 (99)
                      ..+++|+++|.+.   ++-.++..++.+|.+++++.+.. +.+.+.+.+++ ++.|+++
T Consensus       157 ~~~~~v~VvG~G~---~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i  212 (333)
T 1vdc_A          157 FRNKPLAVIGGGD---SAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDV  212 (333)
T ss_dssp             GTTSEEEEECCSH---HHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             cCCCeEEEECCCh---HHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeE
Confidence            4578999999864   77888888889999999998854 33445555444 4566554

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=80.04  E-value=3  Score=29.07  Aligned_cols=58  Identities=16%  Similarity=0.129  Sum_probs=38.9

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      ++++|+++.+.|-..  -+.+.++..++..|.+|.++.-..-+..+.+.+++++.|.++.
T Consensus        14 ~~l~~k~~lVTGas~--gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (270)
T 3is3_A           14 GRLDGKVALVTGSGR--GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAI   71 (270)
T ss_dssp             TCCTTCEEEESCTTS--HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCcCCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEE
Confidence            458899999999765  4999999999999999988643221112233444445554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1ml4a2	157	c.78.1.1 (A:152-308) Aspartate carbamoyltransferas	6e-11
d1pg5a2	153	c.78.1.1 (A:147-299) Aspartate carbamoyltransferas	1e-10
d1ekxa2	160	c.78.1.1 (A:151-310) Aspartate carbamoyltransferas	4e-09
d1duvg2	183	c.78.1.1 (G:151-333) Ornithine transcarbamoylase {	5e-07
d1dxha2	185	c.78.1.1 (A:151-335) Ornithine transcarbamoylase {	2e-06
d1otha2	170	c.78.1.1 (A:185-354) Ornithine transcarbamoylase {	3e-05
d1pvva1	150	c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Ar	6e-05
d1pvva2	163	c.78.1.1 (A:151-313) Ornithine transcarbamoylase {	1e-04
d1vlva2	161	c.78.1.1 (A:153-313) Ornithine transcarbamoylase {	1e-04

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 157

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 53.3 bits (127), Expect = 6e-11
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query: 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV 96
          R++GL I ++GDLK GRTVHSLA  LT YDV+L  +SP  L MP  I E +  KG +   
Sbjct: 1  RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVE 60

Query: 97 Y 97
           
Sbjct: 61 T 61

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 153

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 52.5 bits (125), Expect = 1e-10
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE 81
          ++GL   ++GDLK  RTV+SL R+LT +  KL Y+  P L    
Sbjct: 1  IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRAR 44

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (115), Expect = 4e-09
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLN-YVSPPNLGMPESIQEFVASKGKQQE 95
          R++ L + MVGDLK GRTVHSL + L  +D     +++P  L MP+ I + +  KG    
Sbjct: 1  RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 60

Query: 96 VYE 98
          ++ 
Sbjct: 61 LHS 63

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 5e-07
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
          N +T+   GD +N    +S+     L  + L  V+P       ++     +  +Q 
Sbjct: 4  NEMTLVYAGDARN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQN 58

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Length = 185

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
          + ++   +GD +N    +SL  +     + +   +P  L
Sbjct: 4  HDISYAYLGDARN-NMGNSLLLIGAKLGMDVRIAAPKAL 41

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
           GLT++ +GD  N   +HS+      + + L   +P       S+ + 
Sbjct: 3  KGLTLSWIGDGNN--ILHSIMMSAAKFGMHLQAATPKGYEPDASVTKL 48

>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 150

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.3 bits (86), Expect = 6e-05
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 1   MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLAR 60
           +     + DT  VLS Y D I+ R  +   V++         I  + D  +     +LA 
Sbjct: 84  LRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSH--PCQALAD 141

Query: 61  LLTLYDVK 68
            +T+++ K
Sbjct: 142 YMTIWEKK 149

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 163

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
          + G+ +  VGD  N    HSL    T     +   +P      E + ++      +
Sbjct: 2  IKGVKVVYVGDGNN--VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE 55

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} Length = 161

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.4 bits (83), Expect = 1e-04
 Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
          G+ +  +GD +N     SL        +      P  L     + + 
Sbjct: 3  GVKVVFMGDTRN-NVATSLMIACAKMGMNFVACGPEELKPRSDVFKR 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	99.93
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	99.69
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	99.65
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	99.64
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	99.63
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	99.6
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	99.57
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	99.53
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	99.52
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	99.45
d1ekxa1	150	Aspartate carbamoyltransferase catalytic subunit {	98.98
d1ml4a1	150	Aspartate carbamoyltransferase catalytic subunit {	98.98
d1pvva1	150	Ornithine transcarbamoylase {Archaeon Pyrococcus f	98.91
d1pg5a1	146	Aspartate carbamoyltransferase catalytic subunit {	98.8
d1js1x1	163	Transcarbamylase-like protein {Bacteroides fragili	98.74
d1dxha1	150	Ornithine transcarbamoylase {Pseudomonas aeruginos	98.71
d1duvg1	150	Ornithine transcarbamoylase {Escherichia coli [Tax	98.71
d1vlva1	152	Ornithine transcarbamoylase {Thermotoga maritima [	98.7
d1otha1	151	Ornithine transcarbamoylase {Human (Homo sapiens)	98.69
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	98.63
d2at2a1	144	Aspartate carbamoyltransferase catalytic subunit {	98.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.48
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.66
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.58
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.05
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.82
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.26
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.96
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.7
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.41
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.14
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.1
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.81
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.59
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.46
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.38
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.36
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.25
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.22
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.19
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.18
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.86
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.73
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.05
d1jf8a_	130	Arsenate reductase ArsC {Staphylococcus aureus [Ta	89.43
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.41
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.24
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.24
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.15
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.01
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.61
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.29
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.1
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.03
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.41
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	87.39
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.11
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.99
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.66
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	86.62
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	86.37
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.72
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.52
d2ioja1	120	Hypothetical protein AF1212 {Archaeoglobus fulgidu	84.82
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.74
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	84.64
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.64
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	84.61
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	84.6
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	84.47
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.19
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	83.9
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.49
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	83.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	83.45
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.32
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	81.97
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.4
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.35
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.27
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	80.9
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.61
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	80.41
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	80.34

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-25  Score=166.68  Aligned_cols=96  Identities=42%  Similarity=0.728  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHHhhccCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEECCC
Q psy4411           3 MYSNLIDTVAVLSGYADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMVGDL   49 (99)
Q Consensus         3 ~~Es~~Dta~vls~y~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~vGd~   49 (99)
                      +|||++||++|||+|+|+|++|++.++.+                                 +|++|+++|+||+|+||.
T Consensus        84 kgEsi~Dt~~vls~~~d~iv~R~~~~~~~~~~~~~~~~vPVINAg~~~~~HP~Q~LaD~~Ti~e~~g~l~~~~i~~vGD~  163 (310)
T d1tuga1          84 KGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL  163 (310)
T ss_dssp             TSCCHHHHHHHHTTTCSEEEEEESSBTHHHHHTTTCTTSCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCT
T ss_pred             CCccHHHhhhHhhhcchheeeechhhhhhHHHHHhccCccEEECCCCcccchHHHHHHHHHHHHHcCCcccceEEEEecc
Confidence            78999999999999999999999988755                                 789999999999999999


Q ss_pred             CCchhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          50 KNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .++||+||++.++++|| +++++++|++|++++++++.++++|.++++++
T Consensus       164 ~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  213 (310)
T d1tuga1         164 KYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHS  213 (310)
T ss_dssp             TTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEES
T ss_pred             ccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeee
Confidence            88899999999999995 89999999999999999999999999988764

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=2.7e-17  Score=110.53  Aligned_cols=62  Identities=50%  Similarity=0.727  Sum_probs=58.5

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .++|+||+||||+.||||+|||+.++++||+++++++|++|.+++++.+.+++++.++++++
T Consensus         1 kl~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~   62 (157)
T d1ml4a2           1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETT   62 (157)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred             CcCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeec
Confidence            47999999999999999999999999999999999999999999999999999999988764

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=1.5e-16  Score=110.03  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=54.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~   98 (99)
                      .|+|+||+||||+.| ||+|||+.++++||++|++++|++|+|+++++++++    ++|.++++++
T Consensus         2 ~l~~lkia~vGD~~n-nV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (185)
T d1dxha2           2 PLHDISYAYLGDARN-NMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTE   66 (185)
T ss_dssp             CGGGCEEEEESCCSS-HHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             CCCCCEEEEEcCCcc-hHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEe
Confidence            589999999999855 799999999999999999999999999999988765    4688887764

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.7e-16  Score=106.22  Aligned_cols=62  Identities=39%  Similarity=0.701  Sum_probs=57.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      .++|+||+|+||++||||+|||+.++++|| ..+++++|+++.+++.+.+.++++|.++++++
T Consensus         1 kl~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~   63 (160)
T d1ekxa2           1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHS   63 (160)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhcccccccc
Confidence            378999999999999999999999999996 78899999999999999999999999988764

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.1e-16  Score=108.04  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +++++||+||||+.| ||+|||+.++++||++|++++|++|+|++++.+.+    +.+|.++++++
T Consensus         2 ~~~~l~i~~vGD~~n-nv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~   66 (183)
T d1duvg2           2 AFNEMTLVYAGDARN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTE   66 (183)
T ss_dssp             CGGGCEEEEESCTTS-HHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CcCCCEEEEEcCCcc-HHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEe
Confidence            689999999999855 89999999999999999999999999999987665    46788887764

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=1.2e-15  Score=102.99  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH----HHhcCCeEEEEe
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF----VASKGKQQEVYE   98 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~~~~~~~   98 (99)
                      |+|+||+||||+.| ||+||++.++++||+++++++|++|+|++++.++    +++.+.++++++
T Consensus         1 l~g~ki~~vGD~~n-nV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~   64 (161)
T d1vlva2           1 LKGVKVVFMGDTRN-NVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTS   64 (161)
T ss_dssp             STTCEEEEESCTTS-HHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEES
T ss_pred             CCCCEEEEEcCCcc-HHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEe
Confidence            68999999999844 8999999999999999999999999999988765    446788887764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=4.4e-15  Score=100.66  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=52.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh----cCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS----KGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~----~g~~~~~~~   98 (99)
                      +++|+||+||||++  ||+|||+.++++||++|++++|++|.|++++++.+++    .+..+++++
T Consensus         1 sl~gl~Ia~VGD~~--nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (163)
T d1pvva2           1 TIKGVKVVYVGDGN--NVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLH   64 (163)
T ss_dssp             CCTTCEEEEESCCC--HHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             CcCCCEEEEECCCc--HHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEec
Confidence            48999999999965  5999999999999999999999999999999877653    466776653

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.53  E-value=3.7e-15  Score=100.14  Aligned_cols=59  Identities=34%  Similarity=0.481  Sum_probs=49.1

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |+|+||+||||++||||+|||+.++++||+++++++|+++.++++..  ..+.|.++++++
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~   59 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEI--LDELNYPVKEVE   59 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHH--HTTCCSCEEEES
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhh--cccCCCeEEEEe
Confidence            68999999999999999999999999999999888888777665432  456677777654

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.5e-15  Score=99.59  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=52.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE   98 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~   98 (99)
                      +++|+||+||||++  ||+||++.++++||+++++++|+++.|++++.+.+    .++|.++++++
T Consensus         1 sl~gl~I~~vGD~~--nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~   64 (170)
T d1otha2           1 SLKGLTLSWIGDGN--NILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTN   64 (170)
T ss_dssp             CCTTCEEEEESCSS--HHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             CCCCCEEEEEcCch--hHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEc
Confidence            58999999999985  59999999999999999999999999999887654    46688887764

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=2e-14  Score=96.73  Aligned_cols=46  Identities=28%  Similarity=0.474  Sum_probs=43.1

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHH
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI   83 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~   83 (99)
                      ++|+||+||||.+||||+|||+.++++||+++++++|++|.++++.
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~   46 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENT   46 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccc
Confidence            5899999999999999999999999999999999999999887654

>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=7e-10  Score=74.33  Aligned_cols=63  Identities=32%  Similarity=0.482  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      .+|||++||+++|++|+|+||+|++.++.+.+-........|.-.||+.+.--++.|+.+++.
T Consensus        83 ~kgEsl~Dt~~~l~~~~d~iv~R~~~~~~~~~~~~~~~~vpVINAg~~~~~HPtQaL~D~~Ti  145 (150)
T d1ekxa1          83 KKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTI  145 (150)
T ss_dssp             HSCCCHHHHHHHHTTTCSEEEEEESSTTHHHHHHTTSTTSCEEEEEETTSCCHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHhhccceEEEEecccchhhhhhhhccCcCEEECCCCCCCchHHHHHHHHHH
Confidence            378999999999999999999999999987543222234566666765543499999988764

>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.98  E-value=3.6e-10  Score=75.64  Aligned_cols=62  Identities=32%  Similarity=0.491  Sum_probs=49.0

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      .+|||++||++|||+|+|+|++|++.+..+++ +....++-|.-.||+.+.--++.|+.+++.
T Consensus        84 ~kgEsi~Dta~vls~~~d~iv~R~~~~~~~~~-~~~~~~~PvINag~~~~~HPtQ~L~D~~Ti  145 (150)
T d1ml4a1          84 KKGESLRDTIKTVEQYCDVIVIRHPKEGAARL-AAEVAEVPVINAGDGSNQHPTQTLLDLYTI  145 (150)
T ss_dssp             GGTCCHHHHHHHHTTTCSEEEEEESSTTHHHH-HHHTCSSCEEEEEETTSCCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHhhhcccchhhhh-hcccCCeeEEECCCCCCCChHHHHHHHHHH
Confidence            58999999999999999999999999998744 344556677776765433388999888764

>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.91  E-value=1.9e-09  Score=72.10  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||+++||+|+|+|++|++.|+.+++ +.....+-|.- |++.++-..++|+.+++.
T Consensus        84 ~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~-~a~~~~~pvIN-g~~~~~HPtQaL~D~~Ti  145 (150)
T d1pvva1          84 LRRGETIADTARVLSRYVDAIMARVYDHKDVED-LAKYATVPVIN-GLSDFSHPCQALADYMTI  145 (150)
T ss_dssp             TTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHH-HHHHCSSCEEE-EECSSCCHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHcCCCeeeeeccChhHHHH-HHHhcCCCEEe-CCCCCCCcHHHHHHHHHH
Confidence            468999999999999999999999999998744 33333444443 544333388999888764

>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.80  E-value=3.5e-09  Score=70.31  Aligned_cols=63  Identities=27%  Similarity=0.441  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||+++|++|+|+|++|++.+..+++ +.......|.-.||+.++--+++|+.+++.
T Consensus        78 ~~kgEs~~Dt~~~l~~~~d~iv~R~~~~~~~~~-~~~~~~vpvINag~~~~~HP~Q~L~D~~Ti  140 (146)
T d1pg5a1          78 VAKGENLADTIRMLNNYSDGIVMRHKYDGASRF-ASEISDIPVINAGDGKHEHPTQAVIDIYTI  140 (146)
T ss_dssp             ---CCCHHHHHHHHHHHCSEEEEEESSBTHHHH-HHHHCSSCEEEEEETTTBCHHHHHHHHHHH
T ss_pred             ccCcccHHHHHhHhhhcCCeEEEEecccccchh-hhccCCccEEECCCCCCCCccHHHHHHHHH
Confidence            358999999999999999999999999988733 222344566666765544489999988764

>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=98.74  E-value=4.9e-09  Score=71.04  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCCchhH---------HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAV---------KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~~~~~---------~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      .+|||++||++|||+|+|+|++|++.|...         .+.+....++-|.- |++...--++.|+.+++.
T Consensus        88 ~kgEs~~Dt~~vls~~~D~iviR~~~~~~~~~~~~~~~~~~~~a~~s~vPVIN-g~~~~~HPtQ~L~Dl~Ti  158 (163)
T d1js1x1          88 DKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFS-MEAATRHPLQSFADLITI  158 (163)
T ss_dssp             SCCEEHHHHHHHHHHTCSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEE-SSCSSCCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhCcEEEEecccccchhhhhhhhhHHHHHHHhCCCCEEc-CCCCCCchHHHHHHHHHH
Confidence            589999999999999999999999988642         23333333444444 665544488888887764

>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.71  E-value=1.7e-08  Score=67.27  Aligned_cols=62  Identities=24%  Similarity=0.281  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||+++||+|+|+|++|++.++.+.+ +......-|.- |++.+.--++.|+.+++.
T Consensus        84 ~~kgEs~~Dt~~~ls~~~d~iviR~~~~~~~~~-~~~~~~iPVIN-g~~~~~HPtQ~L~D~~Ti  145 (150)
T d1dxha1          84 IGHKESMKDTARVLGRMYDAIEYRGFKQEIVEE-LAKFAGVPVFN-GLTDEYHPTQMLADVLTM  145 (150)
T ss_dssp             BTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHH-HHHHSSSCEEE-EECSSCCHHHHHHHHHHH
T ss_pred             cccCcchhhhhhhhhcccceEEEEecchhHHHH-HHHhcCCcEEe-CCCCCCChHHHHHHHHHH
Confidence            368999999999999999999999999998833 22233344443 544433488999888764

>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=8.7e-09  Score=68.68  Aligned_cols=62  Identities=23%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||+++|++|+|+|++|++.|+.+++- .....+-|.- |+.+..--++.|+.+++.
T Consensus        83 ~~kgEs~~Dt~~~ls~~~d~iv~R~~~~~~~~~~-~~~~~~pviN-g~~~~~HPtQ~L~Dl~Ti  144 (150)
T d1duvg1          83 IGHKESIKDTARVLGRMYDGIQYRGYGQEIVETL-AEYASVPVWN-GLTNEFHPTQLLADLLTM  144 (150)
T ss_dssp             BTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHH-HHHHSSCEEE-SCCSSCCHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHhcCceEEEecccccchhhc-ccccceeEEc-CCCCCCChhHHHHHHHHH
Confidence            3689999999999999999999999999988432 2212233333 655443488988888764

>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=1e-08  Score=68.50  Aligned_cols=62  Identities=24%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      +.+|||++||+++||+|+|+|++|++.++.+.+- .....+-|.- ||+.+.--++.|+.+++.
T Consensus        85 ~~~gEs~~Dt~~~ls~~~d~iv~R~~~~~~~~~~-a~~~~~PviN-g~~~~~HPtQ~L~D~~Ti  146 (152)
T d1vlva1          85 LGAKESLEDTARVLGRMVDAIMFRGYKQETVEKL-AEYSGVPVYN-GLTDEFHPTQALADLMTI  146 (152)
T ss_dssp             TTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHH-HHHHCSCEEE-SCCSSCCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHhhccccEEEEecCccceeee-ccccceeEEe-CCCCCCCchHHHHHHHHH
Confidence            3689999999999999999999999999988432 2222233433 765543488999888764

>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.2e-08  Score=68.14  Aligned_cols=61  Identities=26%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      .+|||++||++|||+|+|+|++|++.++.+.+ +.....+-|.- |++...-.++.|+.+++.
T Consensus        86 ~kgEs~~Dt~~~ls~~~D~ivir~~~~~~~~~-~a~~~~~PvIN-~~~~~~HPtQ~L~D~~Ti  146 (151)
T d1otha1          86 GVNESLTDTARVLSSMADAVLARVYKQSDLDT-LAKEASIPIIN-GLSDLYHPIQILADYLTL  146 (151)
T ss_dssp             TTTBCHHHHHHHHHHHCSEEEEECSCHHHHHH-HHHHCSSCEEE-SCCSSCCHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHhcCCeEEEEecccccccc-cccccCccEEe-CCCCCcChHHHHHHHHHH
Confidence            58999999999999999999999999998833 22223344444 433333488998887764

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=98.63  E-value=1.4e-08  Score=68.39  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=37.0

Q ss_pred             cEEEEEC--CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHH
Q psy4411          41 LTITMVG--DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE   85 (99)
Q Consensus        41 ~~i~~vG--d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~   85 (99)
                      ..+.|++  -+.|.+|+||++.++++||++++++||++|.|++++..
T Consensus         6 ~~~~~~~h~~~~~~~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~   52 (161)
T d1js1x2           6 VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVG   52 (161)
T ss_dssp             EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHT
T ss_pred             EEEEeccCCCCCccHHHHHHHHHHHHcCCEEEEECCcccCCCHHHhC
Confidence            3455554  34555899999999999999999999999999988753

>d2at2a1 c.78.1.1 (A:1-144) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=3.5e-07  Score=60.28  Aligned_cols=62  Identities=29%  Similarity=0.329  Sum_probs=48.4

Q ss_pred             CCCCCHHHHHHHHhhc-cCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411           2 MMYSNLIDTVAVLSGY-ADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL   64 (99)
Q Consensus         2 ~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~   64 (99)
                      .+||+++||++++++| +|++++|++.++.+.+ +.....+-|.-.||+.+..-+++++.+++.
T Consensus        76 ~~gEs~~d~~~~l~~~~~d~iv~R~~~~~~~~~-~a~~~~vPvINag~~~~~HP~Q~LaD~~Ti  138 (144)
T d2at2a1          76 QKGETLYDTIRTLESIGVDVCVIRHSEDEYYEE-LVSQVNIPILNAGDGCGQHPTQSLLDLMTI  138 (144)
T ss_pred             ccchHHHHHHHHHhhcceeEEEeeccccccccc-ccccCceeEEECCCCCCCchHHHHHHHHHH
Confidence            5799999999999775 8999999999987744 344445566666876544589999988775

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.48  E-value=0.0048  Score=37.46  Aligned_cols=51  Identities=14%  Similarity=0.053  Sum_probs=41.0

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ   93 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~   93 (99)
                      +++|++|.++|-+.   ++..-+..+...|+++++++|+.   .++..+.+++.+.+
T Consensus         9 ~l~~k~vlVvG~G~---va~~ka~~ll~~ga~v~v~~~~~---~~~~~~~~~~~~i~   59 (113)
T d1pjqa1           9 QLRDRDCLIVGGGD---VAERKARLLLEAGARLTVNALTF---IPQFTVWANEGMLT   59 (113)
T ss_dssp             CCBTCEEEEECCSH---HHHHHHHHHHHTTBEEEEEESSC---CHHHHHHHTTTSCE
T ss_pred             EeCCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEeccC---ChHHHHHHhcCCce
Confidence            68999999999865   99999999999999999999843   45665555554443

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.66  E-value=0.03  Score=35.03  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHHHHhcC
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEFVASKG   91 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~a~~~g   91 (99)
                      ++|++|+.+|.++   .+--+++.++++--+|+++++. .+..++...+++++++
T Consensus        32 frgk~V~VvGgGd---sA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~   83 (130)
T d1vdca2          32 FRNKPLAVIGGGD---SAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNP   83 (130)
T ss_dssp             GTTSEEEEECCSH---HHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCT
T ss_pred             hCCCEEEEEcCch---HHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCC
Confidence            7899999999965   7888888899999999999985 5677888888888764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.033  Score=34.43  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=42.6

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHHHhcC
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFVASKG   91 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a~~~g   91 (99)
                      ++|++|+.+|.++   .+--++..++++.-+|++++. +.+..++...+++++++
T Consensus        28 ~~gk~V~VvGgG~---sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~   79 (126)
T d1fl2a2          28 FKGKRVAVIGGGN---SGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLK   79 (126)
T ss_dssp             GBTCEEEEECCSH---HHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCT
T ss_pred             cCCceEEEEeCCH---HHHHHHHhhhccCCceEEEeccccccccccccccccccc
Confidence            8899999999855   777788888999999999987 46778888888888764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.065  Score=32.98  Aligned_cols=49  Identities=8%  Similarity=0.097  Sum_probs=40.8

Q ss_pred             CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHHHh
Q psy4411          38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFVAS   89 (99)
Q Consensus        38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a~~   89 (99)
                      ++|++|+.+|.++   .+--++..++++.-+|+++++ +.+..++...+.+++
T Consensus        25 ~~~k~V~VvGgGd---sA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~   74 (126)
T d1trba2          25 YRNQKVAVIGGGN---TAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMD   74 (126)
T ss_dssp             GTTSEEEEECSSH---HHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHH
T ss_pred             hCCCEEEEECCCH---HHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHH
Confidence            6899999999965   788888889999999999998 467777777776653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0092  Score=37.65  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++|++++++|.+.   ++-.-+..+...|+++++++|+
T Consensus        10 ~l~gkrvLViGgG~---va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGE---VGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESH---HHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence            58999999999965   9999999999999999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.17  Score=30.67  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHHHH----HHhcCCeEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQEF----VASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~~~----a~~~g~~~~   95 (99)
                      ++++++|-+.   +.=-++..++.+|.+++++.....   .+++++.+.    ++++|+++.
T Consensus        24 ~~~vIiG~G~---ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~   82 (122)
T d1v59a2          24 KRLTIIGGGI---IGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK   82 (122)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCc---hHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEE
Confidence            6999999876   888999999999999999986432   235565444    456787664

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.96  E-value=0.23  Score=29.47  Aligned_cols=53  Identities=11%  Similarity=0.175  Sum_probs=39.6

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHH----HHHHhcCCeEEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQ----EFVASKGKQQEV   96 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~----~~a~~~g~~~~~   96 (99)
                      ++++++|-+.   +.-.++..++.+|.+++++.....   .+++++.    +.++++|+++..
T Consensus        23 ~~v~IiGgG~---ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~   82 (117)
T d1ebda2          23 KSLVVIGGGY---IGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT   82 (117)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCc---cceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEc
Confidence            6999999976   889999999999999999875332   2355543    445677877643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.22  Score=29.74  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHH----HHHHhcCCeEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~----~~a~~~g~~~~   95 (99)
                      ++++++|-+.   +.-.++..++.+|.+++++.....   .+++++.    +.++++|+++.
T Consensus        22 ~~vvIiGgG~---ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~   80 (116)
T d1gesa2          22 ERVAVVGAGY---IGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH   80 (116)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEE
T ss_pred             CEEEEECCCh---hhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEE
Confidence            6899999976   888999999999999999987443   2355553    44566777664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.17  Score=29.16  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=26.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +++|+||+++|=+.   +..|.+..+.+.|.+|.+.=
T Consensus         2 ~~~~K~v~ViGlG~---sG~s~a~~L~~~g~~v~~~D   35 (93)
T d2jfga1           2 DYQGKNVVIIGLGL---TGLSCVDFFLARGVTPRVMD   35 (93)
T ss_dssp             CCTTCCEEEECCSH---HHHHHHHHHHHTTCCCEEEE
T ss_pred             CcCCCEEEEEeECH---HHHHHHHHHHHCCCEEEEee
Confidence            47888999998754   67788888888888877654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.41  E-value=0.56  Score=27.56  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=43.4

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHH----HHHHHhcCCeE
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESI----QEFVASKGKQQ   94 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~----~~~a~~~g~~~   94 (99)
                      .+......+++++++|-+.   +.=.++..++.+|.+++++.....   .+++++    .+.+++.|+++
T Consensus        14 ~~~l~~~~~~~vvVvGgG~---ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v   80 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVGGSK---TAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEI   80 (121)
T ss_dssp             HHHCCSCCCSEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhhCCCCEEEEECCCH---HHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEE
Confidence            4445556689999999876   899999999999999999986322   244444    34456667655

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.14  E-value=0.22  Score=30.08  Aligned_cols=52  Identities=10%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHH----HHHHhcCCeEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~----~~a~~~g~~~~   95 (99)
                      ++++++|-+.   ++--++..++++|.+|+++......   .++++.    +.++++|+++.
T Consensus        26 ~~~viiG~G~---iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~   84 (123)
T d1dxla2          26 KKLVVIGAGY---IGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFK   84 (123)
T ss_dssp             SEEEESCCSH---HHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEE
T ss_pred             CeEEEEccch---HHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEE
Confidence            6899999876   9999999999999999999864432   345543    44567776654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.10  E-value=0.49  Score=28.40  Aligned_cols=62  Identities=8%  Similarity=-0.008  Sum_probs=43.2

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHHH----HHHHhcCCeEEE
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESIQ----EFVASKGKQQEV   96 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~~----~~a~~~g~~~~~   96 (99)
                      ++....-++++++++|.+.   +.-.++..++++|.+++++-....    .+++++.    +.++++|+++..
T Consensus        22 ~~~~~~~~~k~vvViGgG~---iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~   91 (123)
T d1nhpa2          22 KQKTVDPEVNNVVVIGSGY---IGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT   91 (123)
T ss_dssp             HHHHTCTTCCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHhhccCCCEEEEECChH---HHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEe
Confidence            3444455678999999976   888899999999999999865322    2456654    335566765543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.21  Score=32.62  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .|+++ +++|++++.+|.++-  |.+-++.+++.-|+.++++.-..-
T Consensus        30 L~~~~i~l~Gk~vvVIGrS~i--VGrPLa~lL~~~gatVt~~~~~t~   74 (170)
T d1a4ia1          30 IKETGVPIAGRHAVVVGRSKI--VGAPMHDLLLWNNATVTTCHSKTA   74 (170)
T ss_dssp             HHTTTCCCTTCEEEEECCCTT--THHHHHHHHHHTTCEEEEECTTCS
T ss_pred             HHHhCcccccceEEEEecCCc--cchHHHHHHHhccCceEEEecccc
Confidence            45665 699999999999886  999999999999999999987553

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=91.59  E-value=0.3  Score=33.25  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=43.6

Q ss_pred             hcCCCC-cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          35 MGRVNG-LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        35 ~g~l~g-~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .|.+.+ .+|+-...+   |...|++..++++|++++++.|+.  .++.-.+.++..|+++.+.
T Consensus        54 ~g~~~~~~~vv~aSsG---N~g~a~A~~a~~~G~~~~i~~p~~--~~~~k~~~~~~~GA~v~~v  112 (292)
T d2bhsa1          54 RGEIKPGDVLIEATSG---NTGIALAMIAALKGYRMKLLMPDN--MSQERRAAMRAYGAELILV  112 (292)
T ss_dssp             TTSCCTTSEEEEECCS---HHHHHHHHHHHHHTCEEEEEEESC--CCHHHHHHHHHTTCEEEEE
T ss_pred             hCCcCCCceeeeeccc---chhHHHHHHHHhcCcceEeeeccC--chhhhhHHHHHhCCCccee
Confidence            355453 344444443   389999999999999999999986  5677778889999988765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.46  E-value=0.52  Score=28.18  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHHHH----HHhcCCeEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQEF----VASKGKQQE   95 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~~~----a~~~g~~~~   95 (99)
                      .++|+++|-+.   +.=.++..++.+|.+++++....-   .+++++.+.    +++.|+++.
T Consensus        22 p~~v~IiGgG~---iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~   81 (117)
T d1onfa2          22 SKKIGIVGSGY---IAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIV   81 (117)
T ss_dssp             CSEEEEECCSH---HHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCch---HHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEE
Confidence            47999999976   888999999999999999986432   235665444    456676664

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.32  Score=34.40  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ++.|.+++.+..+..-.  ||.+.|++..|+++|++.+++.|+..  ++.-++.++..|+++...
T Consensus        89 ~~~g~~~~~~~vv~aSs--GN~g~a~A~~a~~~Gi~~~iv~p~~~--~~~k~~~i~~~GA~vv~v  149 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPTS--GNTGIGLALAAAVRGYRCIIVMPEKM--SSEKVDVLRALGAEIVRT  149 (355)
T ss_dssp             HHHTCSCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEECSCC--CHHHHHHHHHTTCEEEEC
T ss_pred             HHcCCcccCceEEEecc--cchhhHHHHHHHhccCCeEEEeeccc--hHHHHHHHHhcCCeEEEe
Confidence            33455554333333222  34999999999999999999999774  566677889999887653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.36  E-value=0.15  Score=33.72  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+|++++|=++   +.+.++..+.-|||++....|.
T Consensus        46 eL~gktvgIiG~G~---IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          46 RIRGETLGIIGLGR---VGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEECTT
T ss_pred             eeeCceEEEecccc---ccccceeeeeccccceeeccCc
Confidence            49999999999854   9999999999999999999884

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.25  E-value=0.32  Score=31.57  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=33.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .++|+||+++|=+.   +...++..+..||+++....|..
T Consensus        39 ~l~gk~vgIiG~G~---IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGE---IGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCST---HHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCceEEEecccc---ccccceeeeeccccccccccccc
Confidence            48999999999865   99999999999999999999843

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.29  Score=31.97  Aligned_cols=43  Identities=14%  Similarity=0.091  Sum_probs=36.8

Q ss_pred             HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .|+++ +++|++++++|.+.-  |.+-+..++.+-|+.|+++.-..
T Consensus        28 L~~y~i~l~GK~v~VIGrS~~--VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          28 LERYNIDTFGLNAVVIGASNI--VGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             HHHTTCCCTTCEEEEECCCTT--THHHHHHHHHTTTCEEEEECSSC
T ss_pred             HHHcCcccccceEEEEecccc--ccHHHHHHHHHhhcccccccccc
Confidence            45555 799999999999887  99999999999999998886533

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.19  E-value=0.32  Score=29.11  Aligned_cols=53  Identities=8%  Similarity=0.110  Sum_probs=39.8

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHH----HHHHhcCCeEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~----~~a~~~g~~~~   95 (99)
                      ..+++++|-+.   +.=-++.+++++|.+++++-....   .+++++.    +.++++|.++.
T Consensus        22 p~~i~IiG~G~---ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~   81 (119)
T d3lada2          22 PGKLGVIGAGV---IGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL   81 (119)
T ss_dssp             CSEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCeEEEECCCh---HHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceee
Confidence            37899999976   899999999999999999986433   3456644    44556776654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.18  E-value=0.43  Score=29.29  Aligned_cols=55  Identities=16%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             CcEEEEEC-CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC-------HHHHHHHHhcCCeEEE
Q psy4411          40 GLTITMVG-DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP-------ESIQEFVASKGKQQEV   96 (99)
Q Consensus        40 g~~i~~vG-d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~   96 (99)
                      +..+++++ ++..  +.-.++..++.+|.+|+++.|...-++       +.+.+.+++.|+++..
T Consensus        39 ~~~vvi~d~ggg~--ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  101 (156)
T d1djqa2          39 GKRVVILNADTYF--MAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELG  101 (156)
T ss_dssp             CSEEEEEECCCSS--HHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEecCCCh--HHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEe
Confidence            44555554 3344  999999999999999999999654222       2344567788877653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.71  Score=27.63  Aligned_cols=52  Identities=13%  Similarity=0.062  Sum_probs=39.6

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHHH----HHHhcCCeEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQE----FVASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~~----~a~~~g~~~~   95 (99)
                      ++++++|-+.   +.=-++..++.+|.+|+++.....-   +++++.+    .+++.|+++.
T Consensus        23 k~vvIvGgG~---iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~   81 (125)
T d3grsa2          23 GRSVIVGAGY---IAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL   81 (125)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEcCCc---cHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence            6899999876   8889999999999999999985432   3555543    3557777664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.82  E-value=0.16  Score=34.37  Aligned_cols=60  Identities=12%  Similarity=0.080  Sum_probs=44.7

Q ss_pred             hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      ..+|+|+++.+.|-..  .+.+.++..++.-|.+|.+++-..-+.-+++.+++++.|.++..
T Consensus        13 ~~sL~gK~~lITGas~--GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~   72 (272)
T d1g0oa_          13 SASLEGKVALVTGAGR--GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAAC   72 (272)
T ss_dssp             GGCCTTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCCCCEEEEeCCCC--HHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceee
Confidence            4579999999999865  49999999999999999988653322334555666677766544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.73  E-value=0.55  Score=31.08  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ   93 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~   93 (99)
                      ++|+|+||++-|=++   |...++..+..+|++++++-+     +++-++.+...|.+
T Consensus        23 ~~L~gk~v~IqG~G~---VG~~~A~~L~~~Gakvvv~d~-----d~~~~~~~~~~g~~   72 (201)
T d1c1da1          23 GSLDGLTVLVQGLGA---VGGSLASLAAEAGAQLLVADT-----DTERVAHAVALGHT   72 (201)
T ss_dssp             CCSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTTCE
T ss_pred             CCCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEecc-----hHHHHHHHHhhccc
Confidence            369999999999654   999999999999999987654     45555555555543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.55  E-value=0.3  Score=29.50  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC--CCCHHHH----HHHHhcCCeEE
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL--GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~--~~~~~~~----~~a~~~g~~~~   95 (99)
                      +++++||-+.   +.=-++.+++.+|.+|+++..+..  .+++++.    +.+++.|+++.
T Consensus        21 ~~vvIIGgG~---iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~   78 (122)
T d1h6va2          21 GKTLVVGASY---VALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI   78 (122)
T ss_dssp             CSEEEECCSH---HHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CeEEEECCCc---cHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEE
Confidence            5899999876   899999999999999999986532  2355543    44567776664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.29  E-value=0.47  Score=30.04  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECC
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSP   74 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P   74 (99)
                      .+.++++++++|+++|-+.   ++++.+..+...|. +++++..
T Consensus        16 ~~~~~~l~~~~ilviGaG~---~g~~v~~~L~~~g~~~i~v~nR   56 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGE---MGKTVAKSLVDRGVRAVLVANR   56 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCH---HHHHHHHHHHHHCCSEEEEECS
T ss_pred             HHHhCCcccCeEEEECCCH---HHHHHHHHHHhcCCcEEEEEcC
Confidence            6778999999999999854   99999999999997 6888886

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.05  E-value=0.57  Score=27.59  Aligned_cols=52  Identities=12%  Similarity=0.045  Sum_probs=38.4

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHH----HHHHhcCCeE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQ----EFVASKGKQQ   94 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~----~~a~~~g~~~   94 (99)
                      .++++++|-+.   +.-.++..++.+|.+++++.....   .+++++.    +.++++|+++
T Consensus        21 p~~vvIiGgG~---~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i   79 (115)
T d1lvla2          21 PQHLVVVGGGY---IGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL   79 (115)
T ss_dssp             CSEEEEECCSH---HHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred             CCeEEEECCCH---HHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceE
Confidence            47999999876   888899999999999999876433   2345544    3345677655

>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.43  E-value=0.51  Score=28.54  Aligned_cols=56  Identities=7%  Similarity=-0.017  Sum_probs=35.3

Q ss_pred             CCcEEEEECCCC--CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          39 NGLTITMVGDLK--NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        39 ~g~~i~~vGd~~--n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      +.++|.||..+|  .|+++-.++.-...-++++.-++-....++|..++.+++.|..+
T Consensus         1 ~k~~vlFvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~v~p~ai~~l~e~Gid~   58 (130)
T d1jf8a_           1 DKKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDI   58 (130)
T ss_dssp             CCEEEEEEESSSSSHHHHHHHHHHHHSTTTEEEEEEESSCCCCCHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEeCCCcHHHHHHHHHHHhcCCccceeccccccccccchhhhHHhhcccccc
Confidence            357899998655  23444444433222235666555545568899999999988765

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.41  E-value=0.21  Score=33.01  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=32.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.+-++..+.-|||+|....|.
T Consensus        40 el~gk~vgIiG~G~---IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          40 EVRDQVVGVVGTGH---IGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CGGGSEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccCCeEEEecccc---cchhHHHhHhhhcccccccCcc
Confidence            48999999999864   9999999999999999998874

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=1.3  Score=30.95  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             HHHh---cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          32 KEEM---GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        32 ~e~~---g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      +++|   .+|+|++|+.+=...-  =.--|++.+...|++|++++..-+.-.+++.+.+.+.|+.+
T Consensus        34 r~~~~~~kPl~G~rI~~clHlt~--kTA~L~~tL~~~GA~V~~~~~Np~STQDdvaAaL~~~Gi~V   97 (267)
T d1li4a2          34 RERYSASKPLKGARIAGCLHMTV--ETAVLIETLVTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPV   97 (267)
T ss_dssp             HHHHTTTCTTTTCEEEEESCCSH--HHHHHHHHHHHTTCEEEEECSSTTCCCHHHHHHHHHTTCCE
T ss_pred             HHHhcccCCCCCCEEEEEEeehH--HHHHHHHHHHHccCcEEEeccCcccccccceeeeccCCceE
Confidence            4554   4699999998876543  33468888899999999999888888999988888888654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.24  E-value=1.1  Score=26.72  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHHH----HHHHhcCCeEE
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~~----~~a~~~g~~~~   95 (99)
                      .+++++++|-+.   +.--++..++.+|.+++++-+...    .++++..    +.++++|+++.
T Consensus        29 ~~~~vvIIGgG~---iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~   90 (121)
T d1d7ya2          29 PQSRLLIVGGGV---IGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLR   90 (121)
T ss_dssp             TTCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             cCCeEEEECcch---hHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEE
Confidence            358999999876   888899999999999999976432    2355543    34567787764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=0.41  Score=31.19  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      +++|++++.+|.++-  |.+-++.+++.-|+.++++.-
T Consensus        26 ~l~GK~vvVIGrS~i--VG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          26 RLYGKKCIVINRSEI--VGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             TTTTCEEEEECCCTT--THHHHHHHHHTTSCEEEEECS
T ss_pred             CCCCCEEEEECCccc--cHHHHHHHHHHCCCEEEEecc
Confidence            699999999999886  999999999999999998863

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.01  E-value=0.24  Score=32.65  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=32.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|+||+++|=++   +.+.++..+.-|||++....|.
T Consensus        42 ~l~~ktvgIiG~G~---IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1          42 ELGQQTVGVMGTGH---IGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             CGGGSEEEEECCSH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccceeeeeeeccc---ccccccccccccceeeeccCCc
Confidence            48899999999854   9999999999999999999883

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.61  E-value=0.37  Score=30.61  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      +++.++++|+++.++|-+.   +++|.+.++.+.| +++++.=
T Consensus        10 ~~~~~~~~~k~vlIlGaGG---~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1          10 EEEIGRVKDKNIVIYGAGG---AARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             HHHHCCCCSCEEEEECCSH---HHHHHHHHHTSSS-EEEEECS
T ss_pred             HHhCCCcCCCEEEEECCcH---HHHHHHHHHcccc-ceeeehh
Confidence            4556689999999999976   9999999998888 7887753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.29  E-value=0.43  Score=29.59  Aligned_cols=47  Identities=15%  Similarity=-0.009  Sum_probs=34.9

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ   93 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~   93 (99)
                      ++|+++|-+.   +..|++..+.+.|.++.+.   +|..+++.++.+++.|..
T Consensus         2 k~I~IIG~G~---mG~sla~~L~~~g~~~~I~---~~D~~~~~~~~a~~~~~~   48 (171)
T d2g5ca2           2 QNVLIVGVGF---MGGSFAKSLRRSGFKGKIY---GYDINPESISKAVDLGII   48 (171)
T ss_dssp             CEEEEESCSH---HHHHHHHHHHHTTCCSEEE---EECSCHHHHHHHHHTTSC
T ss_pred             CEEEEEccCH---HHHHHHHHHHhcCCCeEEE---EEECChHHHHHHHHhhcc
Confidence            3799999754   9999999999988533332   245678888888887754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.10  E-value=0.31  Score=33.08  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=42.2

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      .+|+|+++.+.|-..  .+.+..+..+++-|.+|.++.=..-+..+.+.+++++.|.++..
T Consensus         3 ~dL~gK~alITGas~--GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~   61 (261)
T d1geea_           3 KDLEGKVVVITGSST--GLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIA   61 (261)
T ss_dssp             GGGTTCEEEETTCSS--HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEE
Confidence            468999888888765  49999999999999999988642211223445566667766544

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.35  Score=27.75  Aligned_cols=33  Identities=9%  Similarity=-0.000  Sum_probs=28.8

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      ++|+++|.+-   -++=++.++.++|.++.+..|..
T Consensus         2 k~vgIlG~GQ---LgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQ---LGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSH---HHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCH---HHHHHHHHHHHcCCEEEEEcCCC
Confidence            5889999853   88899999999999999999954

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.41  E-value=1.5  Score=26.51  Aligned_cols=54  Identities=6%  Similarity=0.035  Sum_probs=39.8

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC----CCHHHH----HHHHhcCCeEE
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG----MPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~----~~~~~~----~~a~~~g~~~~   95 (99)
                      .++++++||-+.   +.-.++..++.+|.+++++-+....    +++++.    +..+++|+++.
T Consensus        34 ~~k~v~VIGgG~---iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~   95 (133)
T d1q1ra2          34 ADNRLVVIGGGY---IGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR   95 (133)
T ss_dssp             TTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCCEEEEECCch---HHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEE
Confidence            468999999876   8889999999999999999875442    244443    33467777653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.57  Score=29.52  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      ++++ .++|++|.++|-+.   +++|.+.++..+|.+++++.-
T Consensus        10 ~~~~~~~~~k~vlIlGaGG---aarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          10 ERLSFIRPGLRILLIGAGG---ASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             HHHTCCCTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECS
T ss_pred             HHcCCCCCCCEEEEECCcH---HHHHHHHHhcccceEEEeccc
Confidence            3444 68999999999876   999999999999999888763

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.11  E-value=0.54  Score=31.91  Aligned_cols=39  Identities=26%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +...++++|++|++-|=++   |...++..+..+|++++.++
T Consensus        23 ~~~~~~l~g~~v~IqGfGn---VG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          23 KKLWGGIEGKTVAIQGMGN---VGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             HHHHSCCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEEE
T ss_pred             HHcCCCCCCCEEEEECCCH---HHHHHHHHHHHcCCeEEEee
Confidence            3455789999999999654   99999999999999998766

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.01  E-value=1.2  Score=29.47  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ   94 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~   94 (99)
                      |.|+|+++.+.|-...  +....+..++.-|++|.+++-..    +...+.+++.|.++
T Consensus         1 g~l~gK~alItGas~G--IG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~   53 (241)
T d2a4ka1           1 GRLSGKTILVTGAASG--IGRAALDLFAREGASLVAVDREE----RLLAEAVAALEAEA   53 (241)
T ss_dssp             CTTTTCEEEEESTTSH--HHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHTCCSSE
T ss_pred             CcCCCCEEEEeCCCCH--HHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHcCCce
Confidence            6799999999998765  99999999999999999987532    23333444555444

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.99  E-value=1.3  Score=26.27  Aligned_cols=53  Identities=13%  Similarity=0.143  Sum_probs=39.7

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC--CCCHHHH----HHHHhcCCeEE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL--GMPESIQ----EFVASKGKQQE   95 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~--~~~~~~~----~~a~~~g~~~~   95 (99)
                      +++++++|-+.   +.-.++..++.+|.+++++.....  .+++++.    +.++++|+++.
T Consensus        32 ~~~vvIiGgG~---iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~   90 (122)
T d1xhca2          32 SGEAIIIGGGF---IGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF   90 (122)
T ss_dssp             HSEEEEEECSH---HHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcEEEECCcH---HHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEE
Confidence            47899999876   888999999999999999986433  3466654    44567776653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.66  E-value=0.81  Score=30.55  Aligned_cols=56  Identities=11%  Similarity=0.073  Sum_probs=39.6

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH-HHhcCCeEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF-VASKGKQQE   95 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~-a~~~g~~~~   95 (99)
                      +|+|+++.+.|-..  .+.+..+..+++.|.+|.++.-..-.. .+..++ .++.|.++.
T Consensus         6 ~l~gK~alITGas~--GIG~aia~~la~~Ga~V~i~~r~~~~~-~~~~~~~~~~~g~~~~   62 (260)
T d1h5qa_           6 SFVNKTIIVTGGNR--GIGLAFTRAVAAAGANVAVIYRSAADA-VEVTEKVGKEFGVKTK   62 (260)
T ss_dssp             CCTTEEEEEETTTS--HHHHHHHHHHHHTTEEEEEEESSCTTH-HHHHHHHHHHHTCCEE
T ss_pred             cCCCCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHHhCCceE
Confidence            58999999999765  499999999999999999987644322 223333 344455543

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=86.62  E-value=0.83  Score=27.55  Aligned_cols=55  Identities=9%  Similarity=0.002  Sum_probs=35.4

Q ss_pred             cEEEEECCCC--CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          41 LTITMVGDLK--NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        41 ~~i~~vGd~~--n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      ++|.||.-+|  .|+++-.++.-...-...+.-++-.+..+++..++.+++.|++++
T Consensus         2 K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~~~~v~~~a~~~l~e~gid~~   58 (137)
T d1jl3a_           2 KIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDIS   58 (137)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSCCCCCHHHHHHHHHTTCCCT
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhCCCCeeecccccccccchHHHHHHHHHhhhhcc
Confidence            6889986544  344555554433222246666666667789999999999887653

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=86.37  E-value=1.1  Score=30.54  Aligned_cols=44  Identities=18%  Similarity=0.174  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      |...|++..++.+|++.+++.|+.  .++.-.+.++..|+++...+
T Consensus        71 N~g~a~A~~a~~~G~~~~i~~p~~--~~~~k~~~~~~~GA~vv~~~  114 (310)
T d1y7la1          71 NTGIALAYVAAARGYKITLTMPET--MSLERKRLLCGLGVNLVLTE  114 (310)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHHTTCEEEEEC
T ss_pred             CchHHHHHHHHHhhccccccchhh--hhhhhhhhHHHhCCceEecc
Confidence            489999999999999999999976  56677788889998887653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.85  Score=29.34  Aligned_cols=38  Identities=13%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL   77 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~   77 (99)
                      .+.+++|+++|=++   +.+.++..+..||+++....|..-
T Consensus        41 ~l~~~~vgiiG~G~---IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          41 EARGKKLGIIGYGH---IGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CSTTCEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccceEEEEeeccc---chhhhhhhcccccceEeecccccc
Confidence            38899999999754   999999999999999999998543

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.52  E-value=0.79  Score=33.11  Aligned_cols=46  Identities=17%  Similarity=0.065  Sum_probs=37.3

Q ss_pred             CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      ..||...|++..|+++|++++++.|+.  .++.-.+.++..|+++...
T Consensus       151 SSGN~GiAlA~~aa~lGik~~Iv~P~~--~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         151 TSSNFGVALSAVARLYGYRARVYLPGA--AEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEETT--SCHHHHHHHHHTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHcCCCEEEEeecc--ccccccccccccCcceeec
Confidence            335599999999999999999999976  4556666788889888654

>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: DRTGG domain
domain: Hypothetical protein AF1212
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.82  E-value=2.7  Score=25.34  Aligned_cols=57  Identities=12%  Similarity=0.041  Sum_probs=37.0

Q ss_pred             HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411          32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQE   95 (99)
Q Consensus        32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~   95 (99)
                      .+++..-++.-+...||-..      ...++...+ ....+. ..++.|++++++.|++.|..+-
T Consensus        39 ~~~l~~~~~~lvvi~GDR~d------i~laa~~~~~i~~iIl-tgg~~p~~~i~~la~~~~ipil   96 (120)
T d2ioja1          39 LRYLREARNAALVTGGDRSD------LLLTALEMPNVRCLIL-TGNLEPVQLVLTKAEERGVPVI   96 (120)
T ss_dssp             HHHHHTCSSEEEEEETTCHH------HHHHHTTCTTEEEEEE-ETTCCCCHHHHHHHHHHTCCEE
T ss_pred             HHHHhhCCCcEEEEecCcHH------HHHHHHhCCCceEEEE-ECCCCCCHHHHHHHHhCCCeEE
Confidence            45555556677888899332      223343443 343333 3488999999999999998763

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.74  E-value=0.68  Score=30.89  Aligned_cols=60  Identities=12%  Similarity=-0.009  Sum_probs=42.4

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .+|+|+++.+.|-..  .+....+..+++-|.+|++.+=..-+.-+.+.+++++.|.++..+
T Consensus         2 ~~L~GK~alITGas~--GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~   61 (259)
T d1ja9a_           2 KPLAGKVALTTGAGR--GIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAI   61 (259)
T ss_dssp             CTTTTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCEEEEeCCCC--HHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEe
Confidence            368999999999754  599999999999999998864322222244455666777666543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=84.64  E-value=2  Score=26.27  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=34.4

Q ss_pred             cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcC
Q psy4411          41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG   91 (99)
Q Consensus        41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g   91 (99)
                      +||+++|-++   +...++..+++-|.+|++...     +++..+.+++.|
T Consensus         2 k~iaIiGaG~---~G~~~A~~l~~~G~~V~~~~r-----~~~~~~~~~~~~   44 (184)
T d1bg6a2           2 KTYAVLGLGN---GGHAFAAYLALKGQSVLAWDI-----DAQRIKEIQDRG   44 (184)
T ss_dssp             CEEEEECCSH---HHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHHT
T ss_pred             CEEEEECccH---HHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHcC
Confidence            7999999965   999999999999999998765     345556665554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.64  E-value=2.1  Score=28.09  Aligned_cols=39  Identities=18%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      |.|+|+++.+.|-...+-+....+..++.-|++|+++.=
T Consensus         1 g~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r   39 (274)
T d2pd4a1           1 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYL   39 (274)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEES
T ss_pred             CcCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            568999999999644324999999999999999999884

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=84.61  E-value=0.73  Score=30.01  Aligned_cols=37  Identities=16%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .+.|++++++|=++   +.+.++..+..||+++....|..
T Consensus        44 ~l~g~tvgIiG~G~---IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          44 KLDNKTLGIYGFGS---IGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHHTTTCEEEEECSSC
T ss_pred             eecccceEEeeccc---chHHHHHHHHhhccccccccccc
Confidence            47899999999854   99999999999999999988743

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=84.60  E-value=1  Score=27.69  Aligned_cols=43  Identities=28%  Similarity=0.010  Sum_probs=33.8

Q ss_pred             EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCC
Q psy4411          42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK   92 (99)
Q Consensus        42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~   92 (99)
                      ||+++|=++   +..|++..+..-|.+|+...     .+++..+.+++.|.
T Consensus         2 kI~iIG~G~---mG~~lA~~l~~~g~~V~~~d-----~~~~~~~~a~~~~~   44 (165)
T d2f1ka2           2 KIGVVGLGL---IGASLAGDLRRRGHYLIGVS-----RQQSTCEKAVERQL   44 (165)
T ss_dssp             EEEEECCSH---HHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHHHTTS
T ss_pred             EEEEEeecH---HHHHHHHHHHHCCCEEEEEE-----CCchHHHHHHHhhc
Confidence            689999854   99999999999999987554     45667777777664

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.47  E-value=0.94  Score=30.88  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      .||...+++..++++|++++++-|+..  ++.-++.++..|+.+...
T Consensus        62 sGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~Ga~v~~~  106 (319)
T d1p5ja_          62 AGNAGMAAAYAARQLGVPATIVVPGTT--PALTIERLKNEGATCKVV  106 (319)
T ss_dssp             SSHHHHHHHHHHHHHTCCEEEEECTTC--CHHHHHHHHHTTCEEEEC
T ss_pred             CCcHHHHHHHHhhhccccceecccccc--ccccccccccceeccccc
Confidence            456999999999999999999999874  455557777778877654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.19  E-value=0.61  Score=31.45  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=33.3

Q ss_pred             cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+|+|+++.+.|-..  .+.+..+..++.-|.+|.++.-.
T Consensus        21 ~~l~gK~alITGas~--GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          21 NSFQGKVAFITGGGT--GLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTTTTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCC--HHHHHHHHHHHHcCCEEEEEECC
Confidence            369999999999865  49999999999999999998753

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.90  E-value=1.2  Score=30.28  Aligned_cols=51  Identities=14%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             EEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411          44 TMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE   98 (99)
Q Consensus        44 ~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~   98 (99)
                      ++.+...  |...|++..++++|++++++.|++.  ++.-.+.++..|+++..++
T Consensus        72 vv~~ssG--N~g~a~A~~a~~~g~~~~i~~p~~~--~~~k~~~l~~~Ga~vi~~~  122 (318)
T d1v71a1          72 VLTFSSG--NHAQAIALSAKILGIPAKIIMPLDA--PEAKVAATKGYGGQVIMYD  122 (318)
T ss_dssp             EEECCSS--HHHHHHHHHHHHTTCCEEEEEETTC--CHHHHHHHHHTTCEEEEEC
T ss_pred             eeeeccc--hhhHHHHHhhcccccceeecccccc--cHHHHHHHHHcCCcEEecc
Confidence            4444434  4999999999999999999999885  5666778888999887653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.85  Score=27.30  Aligned_cols=35  Identities=11%  Similarity=0.024  Sum_probs=30.0

Q ss_pred             CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411          39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN   76 (99)
Q Consensus        39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~   76 (99)
                      .+.||+++|.+-   .++-+++++.++|.++.+..|..
T Consensus        10 ~~~kigIlGgGQ---L~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          10 AATRVMLLGSGE---LGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             TCCEEEEESCSH---HHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEEeCCH---HHHHHHHHHHHCCCEEEEEcCCC
Confidence            346899999753   89999999999999999999853

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.58  E-value=0.92  Score=30.36  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      +|+|+++.+.|-..-  +.+..+..++..|.+|.++.-.. +.-++..+++++.|.++..
T Consensus         2 rL~gK~alITGas~G--IG~aia~~la~~Ga~V~~~~r~~-~~l~~~~~~~~~~g~~~~~   58 (260)
T d1zema1           2 KFNGKVCLVTGAGGN--IGLATALRLAEEGTAIALLDMNR-EALEKAEASVREKGVEARS   58 (260)
T ss_dssp             TTTTCEEEEETTTSH--HHHHHHHHHHHTTCEEEEEESCH-HHHHHHHHHHHTTTSCEEE
T ss_pred             CCCCCEEEEeCCCCH--HHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence            589999999998654  99999999999999998876311 1112344455566665543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.49  E-value=0.83  Score=29.13  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=33.9

Q ss_pred             HHh-cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411          33 EEM-GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP   74 (99)
Q Consensus        33 e~~-g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P   74 (99)
                      ++. .+|+|+++.+.|-..  .+.+.++..+++.|.+|++++=
T Consensus        15 ~~~~~~l~gK~vlItGasg--GIG~~ia~~la~~G~~V~~~~r   55 (191)
T d1luaa1          15 KAAGGSVKGKKAVVLAGTG--PVGMRSAALLAGEGAEVVLCGR   55 (191)
T ss_dssp             HHTTSCCTTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHcCCCCCCCEEEEECCCH--HHHHHHHHHHHhhccchhhccc
Confidence            443 489999999999755  4999999999999999998864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=83.47  E-value=3.1  Score=27.42  Aligned_cols=55  Identities=7%  Similarity=0.113  Sum_probs=41.1

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      +|+|+++.+.|-..-  +.++.+..++.-|.+|.++.=.   ..+...+.+++.|.++..
T Consensus         2 rL~gKvalVTGas~G--IG~aia~~la~~Ga~V~~~~~~---~~~~~~~~~~~~g~~~~~   56 (247)
T d2ew8a1           2 RLKDKLAVITGGANG--IGRAIAERFAVEGADIAIADLV---PAPEAEAAIRNLGRRVLT   56 (247)
T ss_dssp             TTTTCEEEEETTTSH--HHHHHHHHHHHTTCEEEEEESS---CCHHHHHHHHHTTCCEEE
T ss_pred             CCCCCEEEEeCCCCH--HHHHHHHHHHHCCCEEEEEECC---chHHHHHHHHHcCCcEEE
Confidence            488998888897664  9999999999999999988632   234454556666766544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=1.9  Score=27.64  Aligned_cols=57  Identities=11%  Similarity=0.046  Sum_probs=40.9

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC--------------CCCCCCCHHHH----HHHHhcCCeEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS--------------PPNLGMPESIQ----EFVASKGKQQEV   96 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~--------------P~~~~~~~~~~----~~a~~~g~~~~~   96 (99)
                      ...+++|++||-+.   ..=+.+..+++.|.+|+++=              ++++....+++    +++++.|+++..
T Consensus        40 ~~~~k~V~IIGaGP---AGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l  114 (179)
T d1ps9a3          40 AVQKKNLAVVGAGP---AGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKL  114 (179)
T ss_dssp             CSSCCEEEEECCSH---HHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCcEEEEECccH---HHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEe
Confidence            46779999999976   67888889999999999985              23333333433    446677877754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.32  E-value=0.94  Score=29.11  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .++|++++++|-++   +...++..+..||+++....|.
T Consensus        41 ~l~~~~vgiiG~G~---IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          41 DLEAMHVGTVAAGR---IGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             CCTTCEEEEECCSH---HHHHHHHHHGGGTCEEEEECSS
T ss_pred             eccccceeeccccc---cchhhhhhhhccCceEEEEeec
Confidence            48899999999754   9999999999999999999884

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=81.97  E-value=3  Score=29.55  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             HHHhc---CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh-cCCe
Q psy4411          32 KEEMG---RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS-KGKQ   93 (99)
Q Consensus        32 ~e~~g---~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~-~g~~   93 (99)
                      +|+|+   +|+|.||+-+=...-  =.--|++.+..+|++|+.++..-|.-.+++.+.+.+ .|+.
T Consensus        32 r~~~~~~kPlkG~rIagcLHmt~--qTAvLietL~~~GAeV~~~scNp~STQD~vAAAl~~~~gi~   95 (313)
T d1v8ba2          32 REEYGKDQPLKNAKITGCLHMTV--ECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVT   95 (313)
T ss_dssp             HHHSTTTCTTTTCEEEEESCCSH--HHHHHHHHHHHTTCEEEEECSSSSCCCHHHHHHHTTSTTEE
T ss_pred             HHHHhccCCCCCCEEEEEEccHH--HHHHHHHHHHHhCCeeEEeccCCcccchHHHHHhhccCCce
Confidence            56665   599999998866542  334678888889999999999888888888776654 4543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.40  E-value=0.97  Score=30.26  Aligned_cols=57  Identities=11%  Similarity=0.069  Sum_probs=41.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      +|+|+++.+.|-..  .+.+..+..++.-|.+|.++.=. -+.-++..+++++.|.+...
T Consensus         8 ~L~gK~alITGas~--GIG~aia~~la~~Ga~V~~~~r~-~~~~~~~~~~l~~~g~~~~~   64 (255)
T d1fmca_           8 RLDGKCAIITGAGA--GIGKEIAITFATAGASVVVSDIN-ADAANHVVDEIQQLGGQAFA   64 (255)
T ss_dssp             CCTTCEEEETTTTS--HHHHHHHHHHHTTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHcCCcEEE
Confidence            58999999999866  49999999999999999998731 11123445556666665543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.35  E-value=1.3  Score=29.62  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=41.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV   96 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~   96 (99)
                      +|+|+++.+.|-..-  +.+..+..+++-|.+|.+++-..- .-++..+++++.|.....
T Consensus         3 ~L~gK~alITGas~G--IG~aia~~la~~G~~V~i~~r~~~-~l~~~~~~~~~~~~~~~~   59 (258)
T d1ae1a_           3 SLKGTTALVTGGSKG--IGYAIVEELAGLGARVYTCSRNEK-ELDECLEIWREKGLNVEG   59 (258)
T ss_dssp             CCTTCEEEEESCSSH--HHHHHHHHHHHTTCEEEEEESCHH-HHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCEEEEeCCCCH--HHHHHHHHHHHCCCEEEEEECCHH-HHHHHHHHHHhcCCCceE
Confidence            589999999998654  999999999999999999885321 112344555566655543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.27  E-value=1.5  Score=30.24  Aligned_cols=43  Identities=19%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      |.+.|++..++++|+.++++.|+.  .++.-++.++..|+.+...
T Consensus        75 N~g~a~A~~a~~~g~~~~iv~p~~--~~~~k~~~i~~~Ga~vi~~  117 (320)
T d1z7wa1          75 NTGVGLAFTAAAKGYKLIITMPAS--MSTERRIILLAFGVELVLT  117 (320)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEETT--SCHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHHHHhhccceEEeehhh--hhhhhhhhhhccCcceEEe
Confidence            499999999999999999999976  4666667788888887654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=80.90  E-value=1.8  Score=28.77  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             cCCCCcEEEEE--------------CCCCCchhHHHHHHHHhhCCCEEEEEC-CCCCCCC
Q psy4411          36 GRVNGLTITMV--------------GDLKNGRTVHSLARLLTLYDVKLNYVS-PPNLGMP   80 (99)
Q Consensus        36 g~l~g~~i~~v--------------Gd~~n~rv~~Sl~~~~~~~G~~v~~~~-P~~~~~~   80 (99)
                      .+|+|++|.+.              +....|++...++..+..+|.+|++++ |....+|
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p   61 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTP   61 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCC
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcc
Confidence            35778887654              445669999999999999999999876 4444444

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.61  E-value=1.4  Score=29.85  Aligned_cols=43  Identities=9%  Similarity=0.045  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411          53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY   97 (99)
Q Consensus        53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~   97 (99)
                      |...|++.+++.+|+..+++.|+.  .++.-.+.++..|+++..+
T Consensus        65 N~g~a~A~~a~~~g~~~~i~~p~~--~~~~k~~~~~~~GA~V~~~  107 (293)
T d1o58a_          65 NMGIAIAMIGAKRGHRVILTMPET--MSVERRKVLKMLGAELVLT  107 (293)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEETT--SCHHHHHHHHHTTCEEEEE
T ss_pred             chhhHHHHhhhhccceeEeecccc--ccHHHeeccccCCcEEEEe
Confidence            489999999999999999999975  4566677788889888654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.41  E-value=1.1  Score=29.98  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS   73 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~   73 (99)
                      +|+|+++.+.|-..  .+.++.+..+++.|.+|.++.
T Consensus         2 ~l~gK~~lITGas~--GIG~aia~~la~~Ga~V~i~~   36 (251)
T d1vl8a_           2 DLRGRVALVTGGSR--GLGFGIAQGLAEAGCSVVVAS   36 (251)
T ss_dssp             CCTTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEE
Confidence            58899999999866  499999999999999998886

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.34  E-value=1.4  Score=28.31  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411          37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP   75 (99)
Q Consensus        37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~   75 (99)
                      .+.|++++++|=+   ++.+-.+..+..|||++....|.
T Consensus        41 ~l~~k~vgiiG~G---~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          41 EIFGKTVGVVGLG---RIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             CCTTCEEEEECCS---HHHHHHHHHHHTTTCEEEEECTT
T ss_pred             cccceeeeecccc---chhHHHHHHhhhccceEEeecCC
Confidence            4889999999975   39999999999999999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=80.34  E-value=1.6  Score=26.27  Aligned_cols=52  Identities=10%  Similarity=0.093  Sum_probs=37.9

Q ss_pred             CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-C--CCCHHHHHH----HHhcCCeE
Q psy4411          40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-L--GMPESIQEF----VASKGKQQ   94 (99)
Q Consensus        40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~--~~~~~~~~~----a~~~g~~~   94 (99)
                      ..+++++|-+.   +.=-++.+++++|.+++++-... .  .+++++.+.    ++++|+++
T Consensus        26 p~~vvIiGgG~---IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~   84 (125)
T d1ojta2          26 PGKLLIIGGGI---IGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNI   84 (125)
T ss_dssp             CSEEEEESCSH---HHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEE
T ss_pred             CCeEEEECCCH---HHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCccc
Confidence            37899999976   88899999999999999997532 2  246665443    45666544