Psyllid ID: psy443

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN
Secondary Structure (PSIPRED)
cHHHHHHHHccccccEEEEcccccHHHHHHHHHHcHHHHHHHHHHHHccEEEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHccccccccccEEEccccccEEEEEEEccccccccEEEEEcccEEEEEccccccccccHHHHHcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEccccccccccHHcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEcccHHHHHHHHHcccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccHHHHccHEEccccHHHHcHcHHHHHHHHHHHHcccEEEEcccccccEEEEEEcccccHHHHHHHHcHHHHHcccccccccccccccccccccccHcccccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccccccccEccEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHccccccccccEccEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEEcccEEcccEEEc
Coil and Loop (DISEMBL)
MIEKALetqennipdmlclcgriykdkfvesqYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQennipdmlclcgriykdkfvesqYKDKQSLANAIHWYRKgfkgrlrsdvvpkTAENFRALCtgekgfgfkdstfhrvipnfmcqggdftnhngtggksiygnkfedenftlkhtgpgilsmanagpntngsqFFITTVKTawldnrhvVFGSVVEGLDVVKKLesmgsqsgktskkivlrsdvvpktAENFRALCtgekgfgfkdstfhrvipnfmcqggdftnhngtggksiygnkfedenftlkhtgpgilsmanagpntngsqFFITTVKTawldnrhvVFGSVVEGLDVVKKLesmgsqsgktskkivcfn
Flexible Loop (DISEMBL)
MIEKAletqennipdmLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKvslstsgnieVMVIRNKNDDRERATQMIEKAletqennipdMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGfkgrlrsdvvpKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKlesmgsqsgktskkivlrsdvvpktAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKlesmgsqsgktskkivcfn
Low Complexity Region (SEG)
MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN
Disordered region (IsUnstruct)
************IPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIR*********************NNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL*************IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK*******************
Disordered Region (DISOPRED)
*********ENNIPDMLCLCGRIYKDKFVESQYKD*QSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKA************CLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS***KTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK*************KKIVCFN
Disordered Region (DISEMBL)
MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES**********KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES********SKKIVCFN
Disordered Region (DISPRO)
MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMI********************************DKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVxxxxxxxxxxxxxxxxxxxxxQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
P54985	164	Peptidyl-prolyl cis-trans	N/A	N/A	0.367	0.902	0.84	1e-67
P25007	227	Peptidyl-prolyl cis-trans	yes	N/A	0.339	0.603	0.890	3e-67
P29117	206	Peptidyl-prolyl cis-trans	yes	N/A	0.334	0.655	0.829	6e-63
P30405	207	Peptidyl-prolyl cis-trans	yes	N/A	0.330	0.642	0.822	1e-62
Q99KR7	206	Peptidyl-prolyl cis-trans	yes	N/A	0.334	0.655	0.822	1e-62
P30404	208	Peptidyl-prolyl cis-trans	yes	N/A	0.334	0.649	0.822	3e-62
P91791	164	Peptidyl-prolyl cis-trans	N/A	N/A	0.337	0.829	0.808	9e-61
P0C1H7	164	Peptidyl-prolyl cis-trans	N/A	N/A	0.330	0.810	0.777	9e-59
Q9UNP9	301	Peptidyl-prolyl cis-trans	no	N/A	0.339	0.455	0.737	2e-58
Q5R723	301	Peptidyl-prolyl cis-trans	no	N/A	0.339	0.455	0.737	3e-58

>sp|P54985|PPIA_BLAGE Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 134/150 (89%), Gaps = 2/150 (1%)

Query: 256 SQSGKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH 313
           S  G+   +IV  LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNH
Sbjct: 11  SADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSRFHRVIPNFMCQGGDFTNH 70

Query: 314 NGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 373
           NGTGGKSIYG KFEDENF LKHTGPGIL MANAGPNTNGSQFFITT KT+WLDNRHVVFG
Sbjct: 71  NGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFG 130

Query: 374 SVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403
           SVVEG+DVVKKLES+GSQSGKT+KKI   +
Sbjct: 131 SVVEGMDVVKKLESLGSQSGKTNKKIAVVD 160

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Blattella germanica (taxid: 6973)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|P25007|PPIA_DROME Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 126/137 (91%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF
Sbjct: 87  LRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 146

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKHTG GILSMANAG NTNGSQFFI TVKTAWLDN+HVVFG VVEGLDVVKK+E
Sbjct: 147 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIE 206

Query: 387 SMGSQSGKTSKKIVCFN 403
           S GSQSGKTSKKI+  N
Sbjct: 207 SYGSQSGKTSKKIIVAN 223

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P29117|PPIF_RAT Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2

 Score =  241 bits (616), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 124/135 (91%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 65  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRF 124

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct: 125 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 184

Query: 253 SMGSQSGKTSKKIVL 267
           S GS+SGKTSKKIV+
Sbjct: 185 SFGSKSGKTSKKIVI 199

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 125/135 (92%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 66  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 125

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct: 126 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 185

Query: 253 SMGSQSGKTSKKIVL 267
           S GS+SG+TSKKIV+
Sbjct: 186 SFGSKSGRTSKKIVI 200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q99KR7|PPIF_MOUSE Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Mus musculus GN=Ppif PE=1 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP FMCQ GDFTNHNGTGG+SIYG++F
Sbjct: 65  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRF 124

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct: 125 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 184

Query: 253 SMGSQSGKTSKKIVL 267
           S GS+SGKTSKKIV+
Sbjct: 185 SFGSKSGKTSKKIVI 199

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30404|PPIF_BOVIN Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=3

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 67  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 126

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct: 127 PDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 186

Query: 253 SMGSQSGKTSKKIVL 267
           S GS+SGKTSKKIV+
Sbjct: 187 SFGSKSGKTSKKIVI 201

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P91791|PPIA_HEMPU Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1

 Score =  234 bits (597), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 120/136 (88%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            LR+DVVPKTAENFRALCTGEKGFG+K STFHRVIP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELRADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEK 82

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENFTLKHT PGILSMANAG NTNGSQFFI T  T+WLD +HVVFG+V +GLD++KK+
Sbjct: 83  FADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKV 142

Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS SGKTSKKI +
Sbjct: 143 ESYGSDSGKTSKKITI 158

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Hemicentrotus pulcherrimus (taxid: 7650)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1H7|PPIA1_RHIO9 Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp2 PE=3 SV=1

 Score =  228 bits (580), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 119/135 (88%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LR+DVVP+TAENFRALCTGEKGFG+K  +FHRVIP FM QGGDFTNHNGTGGKSIYGNKF
Sbjct: 24  LRADVVPQTAENFRALCTGEKGFGYKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKF 83

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKHTGPG LSMANAGPNTNGSQFFITT+K +WLD +HVVFG V EG+DVV+ +E
Sbjct: 84  RDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIE 143

Query: 253 SMGSQSGKTSKKIVL 267
           S+GS +G    KI++
Sbjct: 144 SLGSPNGTPRAKIII 158

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 120/137 (87%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           +++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 157 QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 216

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++
Sbjct: 217 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 276

Query: 384 KLESMGSQSGKTSKKIV 400
           ++E+ GS+ GK  +K++
Sbjct: 277 QIEAQGSKDGKPKQKVI 293

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in muscle- and brain-specific processes. May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 120/137 (87%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           +++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 157 QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 216

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++
Sbjct: 217 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 276

Query: 384 KLESMGSQSGKTSKKIV 400
           ++E+ GS+ GK  +K++
Sbjct: 277 QIEARGSKDGKPKQKVI 293

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
328871274	282	cyclophilin-type peptidylprolyl cis-tran	0.545	0.780	0.666	2e-80
443419064	164	peptidyl-prolyl isomerase-1 [Locusta mig	0.337	0.829	0.933	2e-68
121543595	165	putative peptidyl-prolyl cis-trans isome	0.339	0.830	0.905	6e-68
1706258	164	RecName: Full=Peptidyl-prolyl cis-trans	0.367	0.902	0.84	8e-66
332374832	164	unknown [Dendroctonus ponderosae]	0.359	0.884	0.829	8e-66
91076258	164	PREDICTED: similar to cyclophilin-like p	0.337	0.829	0.904	1e-65
195030326	165	GH10794 [Drosophila grimshawi] gi|193904	0.337	0.824	0.889	1e-65
195351406	227	GM13410 [Drosophila sechellia] gi|194124	0.339	0.603	0.890	2e-65
45549139	227	cyclophilin 1 [Drosophila melanogaster]	0.339	0.603	0.890	2e-65
401712734	213	G-cadherin, partial [Ophiocoma wendtii]	0.339	0.643	0.890	2e-65

>gi|328871274|gb|EGG19645.1| cyclophilin-type peptidylprolyl cis-trans isomerase [Dictyostelium fasciculatum]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/237 (66%), Positives = 180/237 (75%), Gaps = 17/237 (7%)

Query: 182 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 241
           TGG+SIY  KFEDENF L+H+GPG LSMAN+G NTNGSQFFI T KT WLD  HVVFG+V
Sbjct: 44  TGGESIYNEKFEDENFILRHSGPGTLSMANSGKNTNGSQFFICTEKTDWLDGAHVVFGNV 103

Query: 242 VEGLDVVKKLE-------SMG-SQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFG--- 290
           +EGLDV+K          S+G + +G+   +  L +DVVPKTAENFRALCTGEKG G   
Sbjct: 104 IEGLDVIKMTNPRVFFDISIGETPAGRVVME--LYADVVPKTAENFRALCTGEKGVGKAG 161

Query: 291 ----FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANA 346
               FK S+FHR+IP FMCQGGDFT  NGTGG+SIYG KF DENF LKHTGPG LSMANA
Sbjct: 162 KPLHFKGSSFHRIIPKFMCQGGDFTRGNGTGGESIYGEKFADENFNLKHTGPGTLSMANA 221

Query: 347 GPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403
           G NTNGSQFFI T KT WLD  HVVFG VVEGL+VV+K+E+ GSQ+GKT   +V  N
Sbjct: 222 GKNTNGSQFFICTEKTEWLDGAHVVFGKVVEGLEVVRKMEAQGSQAGKTKVPVVISN 278

Source: Dictyostelium fasciculatum

Species: Dictyostelium fasciculatum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|443419064|gb|AGC84404.1| peptidyl-prolyl isomerase-1 [Locusta migratoria]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/136 (93%), Positives = 132/136 (97%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I LR+DVVPKTAENFRALCTGEKGFG+K STFHRVIPNFMCQGGDFTNHNGTGGKSIYGN
Sbjct: 22  IELRADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 81

Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
           KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITT KT+WLDNRHVVFGSVVEG+DVVKK
Sbjct: 82  KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKK 141

Query: 385 LESMGSQSGKTSKKIV 400
           +ES GSQSGKTSKKIV
Sbjct: 142 IESFGSQSGKTSKKIV 157

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543595|gb|ABM55516.1| putative peptidyl-prolyl cis-trans isomerase [Maconellicoccus hirsutus]

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 132/137 (96%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            LRSDVVPKTAENFRALCTGEKGFG++ STFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK
Sbjct: 24  ELRSDVVPKTAENFRALCTGEKGFGYRGSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 83

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENFTLKHTGPGILSMANAGPNTNGSQFF+TTVKT WLD +HVVFGSV+EG+DVVKKL
Sbjct: 84  FEDENFTLKHTGPGILSMANAGPNTNGSQFFVTTVKTTWLDGKHVVFGSVIEGMDVVKKL 143

Query: 252 ESMGSQSGKTSKKIVLR 268
           ES GSQSGKTSKKIV++
Sbjct: 144 ESYGSQSGKTSKKIVVQ 160

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1706258|sp|P54985.1|PPIA_BLAGE RecName: Full=Peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Cyclophilin; AltName: Full=Cyclosporin A-binding protein; AltName: Full=Rotamase gi|1772496|emb|CAA60869.1| peptidyl-prolyl cis-trans isomerase [Blattella germanica]

 Score =  257 bits (656), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 134/150 (89%), Gaps = 2/150 (1%)

Query: 256 SQSGKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH 313
           S  G+   +IV  LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNH
Sbjct: 11  SADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSRFHRVIPNFMCQGGDFTNH 70

Query: 314 NGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 373
           NGTGGKSIYG KFEDENF LKHTGPGIL MANAGPNTNGSQFFITT KT+WLDNRHVVFG
Sbjct: 71  NGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFG 130

Query: 374 SVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403
           SVVEG+DVVKKLES+GSQSGKT+KKI   +
Sbjct: 131 SVVEGMDVVKKLESLGSQSGKTNKKIAVVD 160

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374832|gb|AEE62557.1| unknown [Dendroctonus ponderosae]

 Score =  257 bits (656), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/147 (82%), Positives = 136/147 (92%), Gaps = 2/147 (1%)

Query: 256 SQSGKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH 313
           +  G+   +IV  LR DVVPKTAENFRALCTGEKGFG+K STFHRVIPNFMCQGGDFT H
Sbjct: 11  TADGQPQGRIVIELRPDVVPKTAENFRALCTGEKGFGYKGSTFHRVIPNFMCQGGDFTAH 70

Query: 314 NGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 373
           NGTGGKSI+GNKFEDENFTLKHTGPG++SMANAGP+TNGSQFFITTVKT+WLDNRHVVFG
Sbjct: 71  NGTGGKSIFGNKFEDENFTLKHTGPGVMSMANAGPDTNGSQFFITTVKTSWLDNRHVVFG 130

Query: 374 SVVEGLDVVKKLESMGSQSGKTSKKIV 400
           +VVEG+DVVKK+E+MGSQSGK +KKIV
Sbjct: 131 TVVEGMDVVKKIEAMGSQSGKANKKIV 157

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076258|ref|XP_966308.1| PREDICTED: similar to cyclophilin-like protein isoform 1 [Tribolium castaneum] gi|270002518|gb|EEZ98965.1| hypothetical protein TcasGA2_TC004820 [Tribolium castaneum]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 130/136 (95%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I LRSDVVPKTAENFRALCTGE GFG+K STFHRVIPNFMCQGGDFTNHNGTGGKSIYGN
Sbjct: 22  IELRSDVVPKTAENFRALCTGEHGFGYKGSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 81

Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
           KF DENFTLKHTG G+LSMANAGP+TNGSQFFITTVKT+WLDNRHVVFG+VVEG+DVVKK
Sbjct: 82  KFADENFTLKHTGFGVLSMANAGPDTNGSQFFITTVKTSWLDNRHVVFGTVVEGMDVVKK 141

Query: 385 LESMGSQSGKTSKKIV 400
           +ES GSQSGKTSKKIV
Sbjct: 142 IESFGSQSGKTSKKIV 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195030326|ref|XP_001988019.1| GH10794 [Drosophila grimshawi] gi|193904019|gb|EDW02886.1| GH10794 [Drosophila grimshawi]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/136 (88%), Positives = 129/136 (94%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            LRSDVVPKTAENFRALCTGEKGFGFKDS+FHRVIPNFMCQGGDFTNHNGTGGKSIYGNK
Sbjct: 24  ELRSDVVPKTAENFRALCTGEKGFGFKDSSFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 83

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF LKHTG GILSMANAGPNTNGSQFFI TVKT+WLDN+HVVFG +VEGLDVVK++
Sbjct: 84  FPDENFRLKHTGAGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGEIVEGLDVVKQI 143

Query: 252 ESMGSQSGKTSKKIVL 267
           ES GSQSGKT+KKIV+
Sbjct: 144 ESYGSQSGKTTKKIVI 159

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195351406|ref|XP_002042225.1| GM13410 [Drosophila sechellia] gi|194124068|gb|EDW46111.1| GM13410 [Drosophila sechellia]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 126/137 (91%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF
Sbjct: 87  LRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 146

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKHTG GILSMANAG NTNGSQFFI TVKTAWLDN+HVVFG VVEGLDVVKK+E
Sbjct: 147 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIE 206

Query: 387 SMGSQSGKTSKKIVCFN 403
           S GSQSGKTSKKI+  N
Sbjct: 207 SYGSQSGKTSKKIIVAN 223

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45549139|ref|NP_523366.2| cyclophilin 1 [Drosophila melanogaster] gi|47117835|sp|P25007.2|PPIA_DROME RecName: Full=Peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Cyclophilin; AltName: Full=Cyclosporin A-binding protein; AltName: Full=Rotamase gi|45447018|gb|AAF48589.2| cyclophilin 1 [Drosophila melanogaster] gi|157816813|gb|ABV82398.1| RE62690p [Drosophila melanogaster]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 126/137 (91%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF
Sbjct: 87  LRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 146

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKHTG GILSMANAG NTNGSQFFI TVKTAWLDN+HVVFG VVEGLDVVKK+E
Sbjct: 147 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIE 206

Query: 387 SMGSQSGKTSKKIVCFN 403
           S GSQSGKTSKKI+  N
Sbjct: 207 SYGSQSGKTSKKIIVAN 223

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401712734|gb|AFP99100.1| G-cadherin, partial [Ophiocoma wendtii]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 126/137 (91%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF
Sbjct: 73  LRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 132

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKHTG GILSMANAG NTNGSQFFI TVKTAWLDN+HVVFG VVEGLDVVKK+E
Sbjct: 133 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIE 192

Query: 387 SMGSQSGKTSKKIVCFN 403
           S GSQSGKTSKKI+  N
Sbjct: 193 SYGSQSGKTSKKIIVAN 209

Source: Ophiocoma wendtii

Species: Ophiocoma wendtii

Genus: Ophiocoma

Family: Ophiocomidae

Order: Ophiurida

Class: Ophiuroidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
FB|FBgn0004432	227	Cyp1 "Cyclophilin 1" [Drosophi	0.339	0.603	0.890	1.2e-63
UNIPROTKB|P30405	207	PPIF "Peptidyl-prolyl cis-tran	0.354	0.690	0.786	1.2e-60
RGD|628670	206	Ppif "peptidylprolyl isomerase	0.334	0.655	0.829	2.4e-60
UNIPROTKB|F1S2E3	207	LOC100152612 "Peptidyl-prolyl	0.334	0.652	0.822	5e-60
MGI|MGI:2145814	206	Ppif "peptidylprolyl isomerase	0.334	0.655	0.822	5e-60
UNIPROTKB|Q5ZMJ0	204	PPIF "Peptidyl-prolyl cis-tran	0.334	0.661	0.822	6.4e-60
UNIPROTKB|F1MPT9	208	PPIF "Peptidyl-prolyl cis-tran	0.334	0.649	0.822	6.4e-60
UNIPROTKB|P30404	208	PPIF "Peptidyl-prolyl cis-tran	0.334	0.649	0.822	6.4e-60
FB|FBgn0036415	164	CG7768 [Drosophila melanogaste	0.334	0.823	0.814	2.2e-59
ZFIN|ZDB-GENE-030131-7459	164	ppiab "peptidylprolyl isomeras	0.359	0.884	0.768	1.4e-57

FB|FBgn0004432 Cyp1 "Cyclophilin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 122/137 (89%), Positives = 126/137 (91%)

Query:   267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
             LRSDVVPKTAENFRALCTGEKGFG+K S FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF
Sbjct:    87 LRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 146

Query:   327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
              DENF LKHTG GILSMANAG NTNGSQFFI TVKTAWLDN+HVVFG VVEGLDVVKK+E
Sbjct:   147 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIE 206

Query:   387 SMGSQSGKTSKKIVCFN 403
             S GSQSGKTSKKI+  N
Sbjct:   207 SYGSQSGKTSKKIIVAN 223

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;NAS

GO:0005829 "cytosol" evidence=ISS

GO:0006457 "protein folding" evidence=IEA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0008024 "positive transcription elongation factor complex b" evidence=NAS

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=NAS

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|P30405 PPIF "Peptidyl-prolyl cis-trans isomerase F, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 114/145 (78%), Positives = 130/145 (89%)

Query:   258 SGKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 315
             +GK   ++VL  ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNG
Sbjct:    55 NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNG 114

Query:   316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
             TGGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V
Sbjct:   115 TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 174

Query:   376 VEGLDVVKKLESMGSQSGKTSKKIV 400
              EG+DVVKK+ES GS+SG+TSKKIV
Sbjct:   175 KEGMDVVKKIESFGSKSGRTSKKIV 199

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IDA

GO:0010940 "positive regulation of necrotic cell death" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0002931 "response to ischemia" evidence=ISS

GO:0071277 "cellular response to calcium ion" evidence=ISS

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISS

GO:0010849 "regulation of proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0032780 "negative regulation of ATPase activity" evidence=ISS

GO:0071243 "cellular response to arsenic-containing substance" evidence=ISS

GO:0090324 "negative regulation of oxidative phosphorylation" evidence=ISS

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|628670 Ppif "peptidylprolyl isomerase F" [Rattus norvegicus (taxid:10116)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 112/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP FMCQ GDFTNHNGTGGKSIYG++F
Sbjct:    65 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRF 124

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   125 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 184

Query:   253 SMGSQSGKTSKKIVL 267
             S GS+SGKTSKKIV+
Sbjct:   185 SFGSKSGKTSKKIVI 199

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0002931 "response to ischemia" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA;ISO

GO:0010849 "regulation of proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0010940 "positive regulation of necrotic cell death" evidence=ISO;ISS

GO:0016018 "cyclosporin A binding" evidence=IDA

GO:0032780 "negative regulation of ATPase activity" evidence=ISS

GO:0042277 "peptide binding" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=IDA

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;ISS

GO:0071243 "cellular response to arsenic-containing substance" evidence=ISS

GO:0071277 "cellular response to calcium ion" evidence=ISS

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0090324 "negative regulation of oxidative phosphorylation" evidence=ISS

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=ISO;ISS

UNIPROTKB|F1S2E3 LOC100152612 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct:    66 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 125

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENF LKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   126 PDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 185

Query:   253 SMGSQSGKTSKKIVL 267
             S GS+SGKTSKKIV+
Sbjct:   186 SFGSKSGKTSKKIVI 200

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:2145814 Ppif "peptidylprolyl isomerase F (cyclophilin F)" [Mus musculus (taxid:10090)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP FMCQ GDFTNHNGTGG+SIYG++F
Sbjct:    65 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRF 124

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   125 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 184

Query:   253 SMGSQSGKTSKKIVL 267
             S GS+SGKTSKKIV+
Sbjct:   185 SFGSKSGKTSKKIVI 199

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IGI

GO:0010940 "positive regulation of necrotic cell death" evidence=ISO

GO:0016018 "cyclosporin A binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=ISO

UNIPROTKB|Q5ZMJ0 PPIF "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQGGDFTNHNGTGGKSIYG++F
Sbjct:    63 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQGGDFTNHNGTGGKSIYGSRF 122

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENF LKH GPG+LSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   123 PDENFLLKHEGPGVLSMANAGPNTNGSQFFICTAKTDWLDGKHVVFGHVKEGMDVVKKIE 182

Query:   253 SMGSQSGKTSKKIVL 267
             S GS++GKTSKKIV+
Sbjct:   183 SFGSKNGKTSKKIVI 197

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

UNIPROTKB|F1MPT9 PPIF "Peptidyl-prolyl cis-trans isomerase" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct:    67 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 126

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENF LKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   127 PDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 186

Query:   253 SMGSQSGKTSKKIVL 267
             S GS+SGKTSKKIV+
Sbjct:   187 SFGSKSGKTSKKIVI 201

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P30404 PPIF "Peptidyl-prolyl cis-trans isomerase F, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 111/135 (82%), Positives = 124/135 (91%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct:    67 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 126

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENF LKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V EG+DVVKK+E
Sbjct:   127 PDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 186

Query:   253 SMGSQSGKTSKKIVL 267
             S GS+SGKTSKKIV+
Sbjct:   187 SFGSKSGKTSKKIVI 201

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0090324 "negative regulation of oxidative phosphorylation" evidence=ISS

GO:0071243 "cellular response to arsenic-containing substance" evidence=ISS

GO:0032780 "negative regulation of ATPase activity" evidence=ISS

GO:0010849 "regulation of proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISS

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0071277 "cellular response to calcium ion" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0010940 "positive regulation of necrotic cell death" evidence=ISS

GO:0002931 "response to ischemia" evidence=ISS

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

FB|FBgn0036415 CG7768 [Drosophila melanogaster (taxid:7227)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 110/135 (81%), Positives = 122/135 (90%)

Query:   133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
             LRSDVVPKTAENFRALCTGEKG+G+K S FHRVIPNFMCQGGDFTN NGTGG+SIYGNKF
Sbjct:    24 LRSDVVPKTAENFRALCTGEKGYGYKGSPFHRVIPNFMCQGGDFTNQNGTGGRSIYGNKF 83

Query:   193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
              DENF LKHTG G+LSMANAG NTNGSQFFI T KT WLDN+HVVFG VVEG+D+V+K+E
Sbjct:    84 PDENFELKHTGAGVLSMANAGANTNGSQFFICTGKTTWLDNKHVVFGKVVEGMDIVQKVE 143

Query:   253 SMGSQSGKTSKKIVL 267
             S GSQ GKTSKK+++
Sbjct:   144 SYGSQDGKTSKKVII 158

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-030131-7459 ppiab "peptidylprolyl isomerase Ab (cyclophilin A)" [Danio rerio (taxid:7955)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 113/147 (76%), Positives = 122/147 (82%)

Query:   259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
             GK + +IV  LR+DVVPKTAENFRALCTGEKGFG+K S FHRVIP FMCQGGDFTNHNGT
Sbjct:    14 GKEAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSGFHRVIPQFMCQGGDFTNHNGT 73

Query:   317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
             GGKSIYGNKFEDENFTLKH G G LSMANAGPNTNGSQFFI T  T WLD +HVVFG VV
Sbjct:    74 GGKSIYGNKFEDENFTLKHGGKGTLSMANAGPNTNGSQFFICTADTNWLDGKHVVFGKVV 133

Query:   377 EGLDVVKKLESMGSQSGKTSKKIVCFN 403
             +GL+VV  +E  GS SGK S K+V  N
Sbjct:   134 DGLNVVDAIEKKGSSSGKCSAKVVIAN 160

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001666 "response to hypoxia" evidence=IDA

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P18253	CYPH_SCHPO	5, ., 2, ., 1, ., 8	0.7573	0.3325	0.8271	yes	N/A
P52009	CYP1_CAEEL	5, ., 2, ., 1, ., 8	0.7183	0.3349	0.7031	yes	N/A
P14832	CYPH_YEAST	5, ., 2, ., 1, ., 8	0.7279	0.3325	0.8271	yes	N/A
P30405	PPIF_HUMAN	5, ., 2, ., 1, ., 8	0.8222	0.3300	0.6425	yes	N/A
P30404	PPIF_BOVIN	5, ., 2, ., 1, ., 8	0.8222	0.3349	0.6490	yes	N/A
Q9SKQ0	CP19B_ARATH	5, ., 2, ., 1, ., 8	0.7284	0.3523	0.8160	yes	N/A
Q99KR7	PPIF_MOUSE	5, ., 2, ., 1, ., 8	0.8222	0.3349	0.6553	yes	N/A
P29117	PPIF_RAT	5, ., 2, ., 1, ., 8	0.8296	0.3349	0.6553	yes	N/A
P25007	PPIA_DROME	5, ., 2, ., 1, ., 8	0.8905	0.3399	0.6035	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	403
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	5e-95
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-94
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-75
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-75
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	5e-59
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	9e-59
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-53
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	2e-53
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	3e-53
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	2e-52
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	2e-50
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	4e-50
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	6e-46
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-45
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	8e-42
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	8e-42
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-41
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	8e-41
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	5e-40
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	3e-39
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-30
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	5e-30
pfam13281	365	pfam13281, DUF4071, Domain of unknown function (DU	5e-27
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	5e-23
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	7e-23
pfam13281	365	pfam13281, DUF4071, Domain of unknown function (DU	2e-21
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	4e-18
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	4e-18
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	2e-15
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	9e-15
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	1e-12
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	1e-12
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-11
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	4e-11
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	6e-10
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	5e-09

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  281 bits (721), Expect = 5e-95
 Identities = 112/149 (75%), Positives = 126/149 (84%), Gaps = 7/149 (4%)

Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFT 311
           G+ + +IV  L +DVVPKTAENFRALCTGEKG     FG+K STFHRVIP+FM QGGDFT
Sbjct: 11  GEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFT 70

Query: 312 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
             NGTGGKSIYG KF DENF LKHTGPG+LSMANAGPNTNGSQFFITTVKT WLD +HVV
Sbjct: 71  RGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVV 130

Query: 372 FGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
           FG VVEG+DVVKK+E++GS +GK  KK+V
Sbjct: 131 FGKVVEGMDVVKKIENVGSGNGKPKKKVV 159

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  279 bits (717), Expect = 2e-94
 Identities = 109/140 (77%), Positives = 120/140 (85%), Gaps = 5/140 (3%)

Query: 132 RLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
            L +DVVPKTAENFRALCTGEKG     FG+K STFHRVIP+FM QGGDFT  NGTGGKS
Sbjct: 20  ELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKS 79

Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           IYG KF DENF LKHTGPG+LSMANAGPNTNGSQFFITTVKT WLD +HVVFG VVEG+D
Sbjct: 80  IYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMD 139

Query: 247 VVKKLESMGSQSGKTSKKIV 266
           VVKK+E++GS +GK  KK+V
Sbjct: 140 VVKKIENVGSGNGKPKKKVV 159

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  232 bits (593), Expect = 1e-75
 Identities = 96/153 (62%), Positives = 112/153 (73%), Gaps = 8/153 (5%)

Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDF 310
              + +IV  L SDV PKTAENFRALC G+      K   +K S FHR+IP FMCQGGD 
Sbjct: 26  NAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDI 85

Query: 311 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
           TNHNGTGG+SIYG KF DENF LKH  PG+LSMANAGPNTNGSQFFITTV   WLD +HV
Sbjct: 86  TNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHV 145

Query: 371 VFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403
           VFG V+EG++VV+ +E  G+QSG   K +V  +
Sbjct: 146 VFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD 178

Length = 183

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  231 bits (591), Expect = 3e-75
 Identities = 94/141 (66%), Positives = 108/141 (76%), Gaps = 6/141 (4%)

Query: 133 LRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
           L SDV PKTAENFRALC G+      K   +K S FHR+IP FMCQGGD TNHNGTGG+S
Sbjct: 36  LFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGES 95

Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           IYG KF DENF LKH  PG+LSMANAGPNTNGSQFFITTV   WLD +HVVFG V+EG++
Sbjct: 96  IYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGME 155

Query: 247 VVKKLESMGSQSGKTSKKIVL 267
           VV+ +E  G+QSG   K +V+
Sbjct: 156 VVRAMEKEGTQSGYPKKPVVV 176

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  190 bits (483), Expect = 5e-59
 Identities = 86/145 (59%), Positives = 106/145 (73%), Gaps = 9/145 (6%)

Query: 264 KIVLRSDVVPKTAENFRALCTGE---KGF--GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           K+ L +D+ PKTAENFR  CTGE    G   G+K   FHRVI +FM QGGDF   +GTG 
Sbjct: 36  KMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-E 377
            SIYG+KFEDENF  KHTGPG+LSMAN+GPNTNG QFFIT  K  WLDN+HVVFG V+ +
Sbjct: 96  VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGD 155

Query: 378 GLDVVKKLESMGSQSGKTSK-KIVC 401
           GL VV+K+E++   +G  ++ K+ C
Sbjct: 156 GLLVVRKIENV--ATGPNNRPKLAC 178

Length = 186

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  189 bits (481), Expect = 9e-59
 Identities = 84/140 (60%), Positives = 100/140 (71%), Gaps = 6/140 (4%)

Query: 130 KGRLRSDVVPKTAENFRALCTGE---KGF--GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           K  L +D+ PKTAENFR  CTGE    G   G+K   FHRVI +FM QGGDF   +GTG 
Sbjct: 36  KMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-E 243
            SIYG+KFEDENF  KHTGPG+LSMAN+GPNTNG QFFIT  K  WLDN+HVVFG V+ +
Sbjct: 96  VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGD 155

Query: 244 GLDVVKKLESMGSQSGKTSK 263
           GL VV+K+E++ +      K
Sbjct: 156 GLLVVRKIENVATGPNNRPK 175

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  174 bits (443), Expect = 2e-53
 Identities = 76/137 (55%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L  D  PKT ENF +L  G     +  +TFHRVIP FM QGGD T   G  G S  G 
Sbjct: 11  IELYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGTGG--GGSGPGY 65

Query: 325 KFEDENFTLK-HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
           KF DENF LK H   G LSMANAGPNTNGSQFFITT  T  LD +H VFG VVEG+DVV 
Sbjct: 66  KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVD 125

Query: 384 KLESMGSQSGKTSKKIV 400
           K+E   +       K V
Sbjct: 126 KIERGDTDENGRPIKPV 142

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  174 bits (443), Expect = 2e-53
 Identities = 65/127 (51%), Positives = 78/127 (61%), Gaps = 9/127 (7%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L  D  PKT  NF  L    +GF +  + FHRVIP FM QGGD T  +GTGG     
Sbjct: 12  TIELYPDKAPKTVANFLQLVK--EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP-- 66

Query: 324 NKFEDENFTLKH--TGPGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
             F+DENF L       G LSMA AG PN+NGSQFFIT V   +LD ++ VFG VVEG+D
Sbjct: 67  -PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD 125

Query: 381 VVKKLES 387
           VV K+++
Sbjct: 126 VVDKIKN 132

Length = 158

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  173 bits (441), Expect = 3e-53
 Identities = 77/139 (55%), Positives = 84/139 (60%), Gaps = 6/139 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D  PKT ENF +L  G     +  +TFHRVIP FM QGGD T   G  G S  G KF
Sbjct: 13  LYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGTGG--GGSGPGYKF 67

Query: 193 EDENFTLK-HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
            DENF LK H   G LSMANAGPNTNGSQFFITT  T  LD +H VFG VVEG+DVV K+
Sbjct: 68  PDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKI 127

Query: 252 ESMGSQSGKTSKKIVLRSD 270
           E   +       K V  SD
Sbjct: 128 ERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  171 bits (436), Expect = 2e-52
 Identities = 64/124 (51%), Positives = 77/124 (62%), Gaps = 9/124 (7%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D  PKT  NF  L    +GF +  + FHRVIP FM QGGD T  +GTGG       F
Sbjct: 15  LYPDKAPKTVANFLQLVK--EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP---PF 68

Query: 193 EDENFTLKH--TGPGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 249
           +DENF L       G LSMA AG PN+NGSQFFIT V   +LD ++ VFG VVEG+DVV 
Sbjct: 69  KDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVD 128

Query: 250 KLES 253
           K+++
Sbjct: 129 KIKN 132

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  166 bits (423), Expect = 2e-50
 Identities = 62/137 (45%), Positives = 78/137 (56%), Gaps = 8/137 (5%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L  D  PKT ENF +LC  +KGF +  + FHRVIP FM QGGD T     G +SI  
Sbjct: 12  VIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGDPTGPGTGGKRSI-- 66

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
               DE  +      G LSMA +GPN+ GSQFFIT      LD  + VFG VVEG+DVV+
Sbjct: 67  ---PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVE 123

Query: 384 KLESMGSQSGKTSKKIV 400
           K+E + +   +  K + 
Sbjct: 124 KIEKVETDGDRPLKDVK 140

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  165 bits (420), Expect = 4e-50
 Identities = 62/138 (44%), Positives = 79/138 (57%), Gaps = 8/138 (5%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L  D  PKT ENF +LC  +KGF +  + FHRVIP FM QGGD T     G +SI    
Sbjct: 14  ELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGDPTGPGTGGKRSI---- 66

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
             DE  +      G LSMA +GPN+ GSQFFIT      LD  + VFG VVEG+DVV+K+
Sbjct: 67  -PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVEKI 125

Query: 252 ESMGSQSGKTSKKIVLRS 269
           E + +   +  K + + S
Sbjct: 126 EKVETDGDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  154 bits (392), Expect = 6e-46
 Identities = 72/135 (53%), Positives = 93/135 (68%), Gaps = 7/135 (5%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           RL  +  PKT ENF    T  +   + ++ FHRVI  FM Q GD T  +GTGG+SI+G +
Sbjct: 12  RLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKE 67

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE + +LKH  P  LSMANAGPNTNGSQFFITTV T WLDN+H VFG VV+G+DVV++
Sbjct: 68  FEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQR 127

Query: 251 LESMGSQSGKTSKKI 265
           +E+   ++ K  +  
Sbjct: 128 IEN--VKTDKNDRPY 140

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  153 bits (389), Expect = 2e-45
 Identities = 72/136 (52%), Positives = 93/136 (68%), Gaps = 7/136 (5%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L  +  PKT ENF    T  +   + ++ FHRVI  FM Q GD T  +GTGG+SI+G 
Sbjct: 11  IRLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGK 66

Query: 325 KFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
           +FEDE + +LKH  P  LSMANAGPNTNGSQFFITTV T WLDN+H VFG VV+G+DVV+
Sbjct: 67  EFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQ 126

Query: 384 KLESMGSQSGKTSKKI 399
           ++E+   ++ K  +  
Sbjct: 127 RIEN--VKTDKNDRPY 140

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  143 bits (363), Expect = 8e-42
 Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 7/124 (5%)

Query: 139 PKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
           PKT +NF  L       G+ + T FHR+I +FM QGGD T   G GG SIYG KFEDE +
Sbjct: 19  PKTCKNFYELAK----RGYYNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIH 73

Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS 256
             LKHTG GILSMANAGPNTNGSQFFIT   T WLD +H +FG V +G+ V++ +  + +
Sbjct: 74  PELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT 133

Query: 257 QSGK 260
           Q+ +
Sbjct: 134 QTDR 137

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  143 bits (363), Expect = 8e-42
 Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 7/124 (5%)

Query: 273 PKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
           PKT +NF  L       G+ + T FHR+I +FM QGGD T   G GG SIYG KFEDE +
Sbjct: 19  PKTCKNFYELAK----RGYYNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIH 73

Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS 390
             LKHTG GILSMANAGPNTNGSQFFIT   T WLD +H +FG V +G+ V++ +  + +
Sbjct: 74  PELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT 133

Query: 391 QSGK 394
           Q+ +
Sbjct: 134 QTDR 137

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  143 bits (362), Expect = 2e-41
 Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 6/142 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D  PK  ENF  LC  +KG+ +  + FHR I NFM QGGD T   G GG+SI+G  F
Sbjct: 15  LHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPF 70

Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           +DE    L H G G+LSMAN+GPNTNGSQFFIT      LD +H VFG VV GL+ ++ +
Sbjct: 71  KDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAM 130

Query: 252 ESMGSQ-SGKTSKKIVLRSDVV 272
           E++    + +  ++I +    V
Sbjct: 131 ENVPDPGTDRPKEEIKIEDTSV 152

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  141 bits (358), Expect = 8e-41
 Identities = 64/121 (52%), Positives = 78/121 (64%), Gaps = 5/121 (4%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  D  PK  ENF  LC  +KG+ +  + FHR I NFM QGGD T   G GG+SI+G  F
Sbjct: 15  LHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPF 70

Query: 327 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
           +DE    L H G G+LSMAN+GPNTNGSQFFIT      LD +H VFG VV GL+ ++ +
Sbjct: 71  KDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAM 130

Query: 386 E 386
           E
Sbjct: 131 E 131

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  139 bits (352), Expect = 5e-40
 Identities = 66/138 (47%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           KI L  D  PK  ENF ALC    G+ +    FHR I  FM Q GD T   G GG+SI+G
Sbjct: 13  KIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWG 68

Query: 324 NKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            KFEDE   TLKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++G + +
Sbjct: 69  KKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETL 128

Query: 383 KKLESMGSQSGKTSKKIV 400
             LE +     K  + + 
Sbjct: 129 DTLEKL--PVDKKYRPLE 144

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  137 bits (347), Expect = 3e-39
 Identities = 66/146 (45%), Positives = 82/146 (56%), Gaps = 7/146 (4%)

Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
           +H      K  L  D  PK  ENF ALC    G+ +    FHR I  FM Q GD T   G
Sbjct: 5   LHTNLGDIKIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPTG-TG 60

Query: 182 TGGKSIYGNKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
            GG+SI+G KFEDE   TLKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG 
Sbjct: 61  KGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGK 120

Query: 241 VVEGLDVVKKLESMGSQSGKTSKKIV 266
           V++G + +  LE +     K  + + 
Sbjct: 121 VIDGFETLDTLEKL--PVDKKYRPLE 144

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  114 bits (287), Expect = 3e-30
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 7/114 (6%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           I L S   PK   NF  LC      G+ D+T FHRV+P F+ QGGD T   GTGG+SIYG
Sbjct: 19  IELWSKEAPKACRNFIQLCLE----GYYDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYG 73

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
             F+DE +  L+    G++ MANAG ++NGSQFF T  K   L+N+H +FG V 
Sbjct: 74  EPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  113 bits (285), Expect = 5e-30
 Identities = 52/107 (48%), Positives = 67/107 (62%), Gaps = 7/107 (6%)

Query: 138 VPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE- 195
            PK   NF  LC      G+ D+T FHRV+P F+ QGGD T   GTGG+SIYG  F+DE 
Sbjct: 26  APKACRNFIQLCLE----GYYDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEF 80

Query: 196 NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 242
           +  L+    G++ MANAG ++NGSQFF T  K   L+N+H +FG V 
Sbjct: 81  HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|222023 pfam13281, DUF4071, Domain of unknown function (DUF4071)

 Score =  110 bits (276), Expect = 5e-27
 Identities = 39/63 (61%), Positives = 50/63 (79%)

Query: 68  RNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRK 127
           RNK  DRE+A Q++ +ALE +E   PDM CLCGRIYKD+F+ES+Y D++SL  AI WYRK
Sbjct: 183 RNKAGDREKALQVLLEALEKKEGPSPDMYCLCGRIYKDRFLESEYTDRESLDKAIEWYRK 242

Query: 128 GFK 130
           GF+
Sbjct: 243 GFE 245

This domain is found at the N-terminus of many serine-threonine kinase-like proteins. Length = 365

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 94.3 bits (235), Expect = 5e-23
 Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 13/130 (10%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L +D  P    NF  LC   K + F    F+ V  +F+ Q GD T   G GG+SIY  
Sbjct: 11  IDLFTDECPLACLNFLKLCK-LKYYNF--CLFYNVQKDFIAQTGDPTG-TGAGGESIYSQ 66

Query: 325 K-------FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSV 375
                   FE E    LKH+  G +SM NAG N NGSQF+IT  +   +LD +H VFG V
Sbjct: 67  LYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQV 126

Query: 376 VEGLDVVKKL 385
           VEG DV++K+
Sbjct: 127 VEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 93.9 bits (234), Expect = 7e-23
 Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 13/128 (10%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK- 191
           L +D  P    NF  LC   K + F    F+ V  +F+ Q GD T   G GG+SIY    
Sbjct: 13  LFTDECPLACLNFLKLCK-LKYYNF--CLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLY 68

Query: 192 ------FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVE 243
                 FE E    LKH+  G +SM NAG N NGSQF+IT  +   +LD +H VFG VVE
Sbjct: 69  GRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVE 128

Query: 244 GLDVVKKL 251
           G DV++K+
Sbjct: 129 GFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|222023 pfam13281, DUF4071, Domain of unknown function (DUF4071)

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 2   IEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGN 61
           + +ALE +E   PDM CLCGRIYKD+F+ES+Y D++SL  AI WYRKGF+   +     N
Sbjct: 196 LLEALEKKEGPSPDMYCLCGRIYKDRFLESEYTDRESLDKAIEWYRKGFEADPNEYPGIN 255

Query: 62  IEV-MVIRNKNDDRERATQMIEKALETQ 88
           +   +VI+  + +R    + I   L   
Sbjct: 256 LATLLVIKGPDFERSSELRKIGVTLNNL 283

This domain is found at the N-terminus of many serine-threonine kinase-like proteins. Length = 365

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 83.0 bits (205), Expect = 4e-18
 Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 13/131 (9%)

Query: 133 LRSDVVPKTAENFRALCTGEKGF----GFK----DSTFHRVIPNF-MCQGGDFTNHNGTG 183
           L  DVVP+T ENFRAL TG  G     G K     +  H V  N  +   G+  + N   
Sbjct: 73  LFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN--- 129

Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
             S  G    DE +  +HT  G+L+M + GP+T+GS F IT   +  LD + VVFG  V+
Sbjct: 130 -VSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVD 188

Query: 244 GLDVVKKLESM 254
            L +++KLES+
Sbjct: 189 DLSLLEKLESL 199

Length = 249

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 83.0 bits (205), Expect = 4e-18
 Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 13/131 (9%)

Query: 267 LRSDVVPKTAENFRALCTGEKGF----GFK----DSTFHRVIPNF-MCQGGDFTNHNGTG 317
           L  DVVP+T ENFRAL TG  G     G K     +  H V  N  +   G+  + N   
Sbjct: 73  LFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN--- 129

Query: 318 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 377
             S  G    DE +  +HT  G+L+M + GP+T+GS F IT   +  LD + VVFG  V+
Sbjct: 130 -VSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVD 188

Query: 378 GLDVVKKLESM 388
            L +++KLES+
Sbjct: 189 DLSLLEKLESL 199

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           + L  D  P T ENF A     KGF + ++ FHRVI  F+ QGG FT             
Sbjct: 11  VELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFT----PDLAQKETL 63

Query: 325 K--FEDENFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVV 376
           K    +    L +T  G ++MA    P++  SQFFI     A LD +     + VFG V 
Sbjct: 64  KPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVT 122

Query: 377 EGLDVVKKLES 387
           EG+DVV K+  
Sbjct: 123 EGMDVVDKIAG 133

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 16/129 (12%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK- 191
           L  D  P T ENF A     KGF + ++ FHRVI  F+ QGG FT             K 
Sbjct: 13  LYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFT----PDLAQKETLKP 65

Query: 192 -FEDENFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEG 244
              +    L +T  G ++MA    P++  SQFFI     A LD +     + VFG V EG
Sbjct: 66  IKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEG 124

Query: 245 LDVVKKLES 253
           +DVV K+  
Sbjct: 125 MDVVDKIAG 133

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 17/132 (12%)

Query: 135 SDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFE 193
            D  P+T +NF   C      GF ++T FHRVI  FM QGG F    G   K+       
Sbjct: 17  DDKAPETVKNFLDYCRE----GFYNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKN 70

Query: 194 DENFTLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEG 244
           + N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF  VVEG
Sbjct: 71  EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEG 129

Query: 245 LDVVKKLESMGS 256
           +DVV K++ + +
Sbjct: 130 MDVVDKIKGVAT 141

Length = 164

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 17/132 (12%)

Query: 269 SDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFE 327
            D  P+T +NF   C      GF ++T FHRVI  FM QGG F    G   K+       
Sbjct: 17  DDKAPETVKNFLDYCRE----GFYNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKN 70

Query: 328 DENFTLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEG 378
           + N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF  VVEG
Sbjct: 71  EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEG 129

Query: 379 LDVVKKLESMGS 390
           +DVV K++ + +
Sbjct: 130 MDVVDKIKGVAT 141

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 54/167 (32%), Positives = 71/167 (42%), Gaps = 46/167 (27%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L S   P + +NF        GF + ++TFHRVIP FM QGG FT               
Sbjct: 44  LNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT--------------- 85

Query: 193 EDENFTLKHTGPGILSMANAG-PNTNG--------------SQFFITTVKTAWLDN---- 233
             E    K   P I + A+ G  NT G              SQFFI     A+LD+    
Sbjct: 86  --EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 143

Query: 234 -RHVVFGSVVEGLDVVKKL-----ESMGSQSGKTSKKIVLRS-DVVP 273
             + VFG VV+G+DV  K+       +G      SK +V+ S  V+P
Sbjct: 144 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 47/139 (33%), Positives = 60/139 (43%), Gaps = 40/139 (28%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L S   P + +NF        GF + ++TFHRVIP FM QGG FT               
Sbjct: 44  LNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT--------------- 85

Query: 327 EDENFTLKHTGPGILSMANAG-PNTNG--------------SQFFITTVKTAWLDN---- 367
             E    K   P I + A+ G  NT G              SQFFI     A+LD+    
Sbjct: 86  --EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 143

Query: 368 -RHVVFGSVVEGLDVVKKL 385
             + VFG VV+G+DV  K+
Sbjct: 144 FGYAVFGKVVKGMDVADKI 162

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 48/156 (30%), Positives = 64/156 (41%), Gaps = 37/156 (23%)

Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG------- 317
           IVL     P TA NF  L   E+GF +    FHRV   F+ Q GD    N          
Sbjct: 11  IVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGK 67

Query: 318 -------------GKSIYGNKFE-----DENFTLKHTGPGILSMANA--GPNTNGSQFFI 357
                         + +YG   E     DE   L     G ++MA     PN+  SQFF 
Sbjct: 68  SRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFF 127

Query: 358 -------TTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
                  T  +   LD R+ VFG V +GLD++++L+
Sbjct: 128 LLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 37/148 (25%)

Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG--------------- 183
           P TA NF  L   E+GF +    FHRV   F+ Q GD    N                  
Sbjct: 19  PVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEI 75

Query: 184 -----GKSIYGNKFE-----DENFTLKHTGPGILSMANA--GPNTNGSQFFI-------T 224
                 + +YG   E     DE   L     G ++MA     PN+  SQFF        T
Sbjct: 76  KPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELT 135

Query: 225 TVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
             +   LD R+ VFG V +GLD++++L+
Sbjct: 136 PSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0882|consensus	558		100.0
KOG0879|consensus	177		100.0
KOG0111|consensus	298		100.0
KOG0881|consensus	164		100.0
KOG0880|consensus	217		100.0
KOG0546|consensus	372		100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
KOG0881|consensus	164		100.0
KOG0883|consensus	518		100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
KOG0884|consensus	161		100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0883|consensus	518		100.0
KOG0884|consensus	161		100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
KOG0111|consensus	298		100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0879|consensus	177		100.0
KOG0882|consensus	558		100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0865|consensus	167		100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.98
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.98
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.98
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.97
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.96
KOG0885|consensus	439		99.96
KOG0415|consensus	479		99.96
KOG0885|consensus	439		99.96
KOG0865|consensus	167		99.95
KOG0415|consensus	479		99.95
KOG4279|consensus	1226		99.94
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	99.82
PRK00969	508	hypothetical protein; Provisional	99.39
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	99.35
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	98.71
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	98.39
PRK00969	508	hypothetical protein; Provisional	98.36
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	97.95
KOG4279|consensus	1226		95.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.29
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	88.11

>KOG0546|consensus

Probab=100.00  E-value=4.8e-48  Score=372.38  Aligned_cols=148  Identities=61%  Similarity=0.974  Sum_probs=144.0

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCC--------ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK  325 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~--------~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~  325 (403)
                      +++++|.++|  +|+.|.||+|||||+.||||+.|.        +|+|+.|||||++|||||||++.++|+||.||||..
T Consensus        16 SI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~   95 (372)
T KOG0546|consen   16 SIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEK   95 (372)
T ss_pred             EeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccc
Confidence            8899999999  999999999999999999999874        699999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      |+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.||.+.++. ++|..+|+|.|
T Consensus        96 FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~d  174 (372)
T KOG0546|consen   96 FDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISD  174 (372)
T ss_pred             cccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 58999999986

>KOG0880|consensus

Probab=100.00  E-value=8.1e-47  Score=335.56  Aligned_cols=148  Identities=66%  Similarity=1.065  Sum_probs=142.6

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhc-CCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCT-GEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  332 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~-g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~  332 (403)
                      ...+++.++|  .||...+|+|++||..||+ +.++++|.++.||||+|||||||||++.++|+||.++||+.|+||++.
T Consensus        47 ~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf~  126 (217)
T KOG0880|consen   47 EIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENFK  126 (217)
T ss_pred             EECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccce
Confidence            4557788887  9999999999999999999 889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       333 ~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ++|+++|.|||||.||++||||||||+.+.|||||+|+|||+|++|||+|.+||.++|+. ++|+++|+|.|
T Consensus       127 LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~  198 (217)
T KOG0880|consen  127 LKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIAN  198 (217)
T ss_pred             eecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEee
Confidence            999999999999999999999999999999999999999999999999999999999986 89999999975

>KOG0882|consensus

Probab=100.00  E-value=3.1e-42  Score=337.65  Aligned_cols=277  Identities=33%  Similarity=0.525  Sum_probs=229.5

Q ss_pred             eeEEEEeee----eEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCC-cccCC-C--
Q psy443          119 ANAIHWYRK----GFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYG-N--  190 (403)
Q Consensus       119 ~v~~~T~~G----~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~-~~~~~-~--  190 (403)
                      -+.|.|..|    -|.|+++.+-.|.-++-|..+|  +.++ +++..|-||...++.|.||-.-....+| -..|. +  
T Consensus       100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~  176 (558)
T KOG0882|consen  100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP  176 (558)
T ss_pred             ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence            488999999    7999999999999999999999  8888 9999999999999999997433222111 11111 1  


Q ss_pred             -cccC--CCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC----Ccccc
Q psy443          191 -KFED--ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS----GKTSK  263 (403)
Q Consensus       191 -~~~~--e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~----~~p~~  263 (403)
                       ++++  ..+.++|. .-++..........+-+|.+.-...+.+..+..|+|+|.+|-++++.|....+..    ..|.+
T Consensus       177 ~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~  255 (558)
T KOG0882|consen  177 FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG  255 (558)
T ss_pred             ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence             1222  24566665 4555555555555667787777777778888888888888888888776654311    11111


Q ss_pred             --------------------------------------------------------------------------------
Q psy443          264 --------------------------------------------------------------------------------  263 (403)
Q Consensus       264 --------------------------------------------------------------------------------  263 (403)
                                                                                                      
T Consensus       256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~  335 (558)
T KOG0882|consen  256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNL  335 (558)
T ss_pred             cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------------e
Q psy443          264 -------------------------------------------------------------------------------K  264 (403)
Q Consensus       264 -------------------------------------------------------------------------------~  264 (403)
                                                                                                     +
T Consensus       336 ~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf~ep~~~~~~~dvfne~p~~~~~~~~~~~~g~~~l~~~aiihtt~gd  415 (558)
T KOG0882|consen  336 AALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLFREPEFTESDRDVFNEKPLKEELMEARQEEGNKLLGKAAIIHTTQGD  415 (558)
T ss_pred             hhhhhhhccCcccccCCCCeEEEeeeecceEEEEecCCCCcchhhhhccCcChhHhhhhhhccCceecccceEEEecccc
Confidence                                                                                           3


Q ss_pred             e--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          265 I--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       265 I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      |  +||++.||++++||-..|  ++|| |+|..|||||++||||+|||.+ +|+||+++||..|+||.. +++|+++-+|
T Consensus       416 i~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~g-~gtggesiwg~dfedefh~~lrhdrpft~  491 (558)
T KOG0882|consen  416 IHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPLG-DGTGGESIWGKDFEDEFHPNLRHDRPFTV  491 (558)
T ss_pred             eEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCCC-CCCCCcccccccchhhcCcccccCCCceE
Confidence            3  899999999999999999  8999 9999999999999999999988 999999999999999985 7999999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ||||+|||+||||||||+.++|||||+|||||||+.|||||.+|+++.|+. +||.++++|+|
T Consensus       492 smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin  554 (558)
T KOG0882|consen  492 SMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN  554 (558)
T ss_pred             EecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence            999999999999999999999999999999999999999999999999975 99999999986

>KOG0879|consensus

Probab=100.00  E-value=1.6e-42  Score=290.24  Aligned_cols=155  Identities=56%  Similarity=0.949  Sum_probs=146.1

Q ss_pred             ceeEEEeEeecccccccccccCCCCCccccee--eeccccCCcchhhHHHhhcCCCC-----CccCCceEEeecCCeEEE
Q psy443          234 RHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQ  306 (403)
Q Consensus       234 ~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g-----~~Y~g~~f~Rvi~~f~iq  306 (403)
                      .-+||      |||        .+++.++++|  +|+.|.+|+|+|||+..|||+..     .+|+++.|||||++||||
T Consensus        10 nPvVF------~dv--------~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQ   75 (177)
T KOG0879|consen   10 NPVVF------FDV--------AIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQ   75 (177)
T ss_pred             CCeEE------EEE--------eeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheec
Confidence            34788      777        7778888887  99999999999999999999742     379999999999999999


Q ss_pred             eCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443          307 GGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE  386 (403)
Q Consensus       307 gGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~  386 (403)
                      |||+..++|+|-.++|+.+|+||++.++|..+|+|||||+|+++||.|||||..++.+||++|+|||||++|+.++++||
T Consensus        76 gGDFv~gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIE  155 (177)
T KOG0879|consen   76 GGDFVNGDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIE  155 (177)
T ss_pred             cCceecCCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC-CCCccccEEEe
Q psy443          387 SMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       387 ~~~t~-~~~P~~~i~I~  402 (403)
                      .+++- |+||+.+|.|+
T Consensus       156 nvp~G~NnkPKl~v~i~  172 (177)
T KOG0879|consen  156 NVPTGPNNKPKLPVVIV  172 (177)
T ss_pred             cCCCCCCCCCCCcEEEe
Confidence            99995 68999999986

>KOG0111|consensus

Probab=100.00  E-value=3.3e-42  Score=310.24  Aligned_cols=148  Identities=68%  Similarity=1.140  Sum_probs=142.1

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      .+...+.++|  .|..+.+|++++||..||+|++||+|+|++||||||.||+||||+++++|+||.++||..|+||++.+
T Consensus       144 kig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~l  223 (298)
T KOG0111|consen  144 KIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFTL  223 (298)
T ss_pred             eecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccceee
Confidence            3455667777  88899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +|+.+|+|||||+|+|+|||||||++....|||++|+|||.|+|||+||+++|+..+.+++|...|+|++
T Consensus       224 kht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~  293 (298)
T KOG0111|consen  224 KHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVE  293 (298)
T ss_pred             ecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999974

>KOG0881|consensus

Probab=100.00  E-value=1.6e-42  Score=287.08  Aligned_cols=136  Identities=49%  Similarity=0.877  Sum_probs=130.6

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      ..+|||-..+|++|+||..|+  ++|| |+|+.||||+++||||||||++ .|.||.++||..|+||-. .++|...|+|
T Consensus        21 i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPTG-TGRGGaSIYG~kF~DEi~~dLkhTGAGIL   96 (164)
T KOG0881|consen   21 ITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPTG-TGRGGASIYGDKFEDEIHSDLKHTGAGIL   96 (164)
T ss_pred             eehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCCC-CCCCccccccchhhhhhhhhhcccchhhh
Confidence            345999999999999999999  9999 9999999999999999999998 899999999999999975 6999999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEe
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCF  402 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~  402 (403)
                      ||||+|||+|||||||||.|.+||||+|++||||..||+|+++|..+.|++ +||+.+++|+
T Consensus        97 sMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIi  158 (164)
T KOG0881|consen   97 SMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKII  158 (164)
T ss_pred             hhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeE
Confidence            999999999999999999999999999999999999999999999999987 8999999996

>KOG0880|consensus

Probab=100.00  E-value=1.6e-40  Score=295.46  Aligned_cols=161  Identities=58%  Similarity=0.960  Sum_probs=148.5

Q ss_pred             cccccccccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhc-CCCCcccCCCEEEeeeCCeEEEeCcCCC
Q psy443          100 GRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCT-GEKGFGFKDSTFHRVIPNFMCQGGDFTN  178 (403)
Q Consensus       100 ~~v~~~~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~-g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~  178 (403)
                      +++.-..++|.++-++         ..|+|+|+||++.+|+||+||..||. +.++++|.++.||||+|||||||||++.
T Consensus        36 p~vT~kV~fdi~~g~~---------~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~  106 (217)
T KOG0880|consen   36 PKVTHKVYFDIEIGGE---------PVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTK  106 (217)
T ss_pred             CcceeEEEEEEEECCE---------eccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcccc
Confidence            3455566667677665         78999999999999999999999998 8899999999999999999999999999


Q ss_pred             CCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-C
Q psy443          179 HNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-Q  257 (403)
Q Consensus       179 ~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~  257 (403)
                      +++.|+.+++|.+|+||+..++|+++|.||||+.+||+||||||||+...+|||++|+|||+|++||++|.+|+.+.+ .
T Consensus       107 g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~  186 (217)
T KOG0880|consen  107 GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDE  186 (217)
T ss_pred             CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999986 5


Q ss_pred             CCcccceeeecc
Q psy443          258 SGKTSKKIVLRS  269 (403)
Q Consensus       258 ~~~p~~~I~L~~  269 (403)
                      .++|...+.|..
T Consensus       187 ~dkP~e~v~I~~  198 (217)
T KOG0880|consen  187 RDKPLEDVVIAN  198 (217)
T ss_pred             CCCccccEEEee
Confidence            678888775544

>KOG0546|consensus

Probab=100.00  E-value=7.2e-41  Score=322.77  Aligned_cols=155  Identities=57%  Similarity=0.901  Sum_probs=147.4

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc--------ccCCCEEEeeeCCeEEEeCcCC
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFT  177 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~--------~Y~~~~f~Rv~~~~~iqgGd~~  177 (403)
                      +|+|++|..+         ..|+|++|||.|.+|+||+||..||+|+.|.        .|.|+.||||+++|||||||++
T Consensus        11 ~ffDISI~ge---------~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs   81 (372)
T KOG0546|consen   11 VFFDISIGGE---------PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFS   81 (372)
T ss_pred             EEEEEEeCCc---------ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccc
Confidence            8999999998         8999999999999999999999999999984        4999999999999999999999


Q ss_pred             CCCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC
Q psy443          178 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ  257 (403)
Q Consensus       178 ~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~  257 (403)
                      .++|+||.|+||..|+||++.++|+++++||||+.|||+||||||||+.++||||+.|+|||+||.|++||+.|+.+.++
T Consensus        82 ~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d  161 (372)
T KOG0546|consen   82 EGNGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETD  161 (372)
T ss_pred             cCCCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             C-Ccccceeeecc
Q psy443          258 S-GKTSKKIVLRS  269 (403)
Q Consensus       258 ~-~~p~~~I~L~~  269 (403)
                      . +.|..+|+|..
T Consensus       162 ~~skP~~dV~I~d  174 (372)
T KOG0546|consen  162 EESKPLADVVISD  174 (372)
T ss_pred             cCCCCccceEecc
Confidence            4 47988886654

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-39  Score=287.14  Aligned_cols=135  Identities=48%  Similarity=0.794  Sum_probs=123.1

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCC--Cc
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG--PG  339 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~--~G  339 (403)
                      ...|+|+.+.||+||+||+.||  +.|| |+|+.||||+|+||+||||++++.+.+|++   .+|++|.+...|++  +|
T Consensus        10 ~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~~~~~~G   83 (158)
T COG0652          10 DITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNGDRHKRG   83 (158)
T ss_pred             CEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccccccccccCCcc
Confidence            3556999999999999999999  7899 999999999999999999999987888875   88999998888877  99


Q ss_pred             EEEEecCC-CCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443          340 ILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF  402 (403)
Q Consensus       340 ~lsma~~g-~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~  402 (403)
                      +|||||.+ ||||+|||||++.++||||++|+|||+|++|||+|++|++..+.+     +.|..+++|.
T Consensus        84 ~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~  152 (158)
T COG0652          84 TLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKIL  152 (158)
T ss_pred             eEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEe
Confidence            99999999 999999999999999999999999999999999999999987764     4566666664

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-39  Score=287.63  Aligned_cols=132  Identities=49%  Similarity=0.805  Sum_probs=124.4

Q ss_pred             eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443          120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  199 (403)
Q Consensus       120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~  199 (403)
                      +.++|++|+|+||||++.||+||+||++||  +.|| |+++.||||+++||+|||||+.+.+.|++   +.++++|....
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~   75 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFAL   75 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccccc
Confidence            678999999999999999999999999999  8899 99999999999999999999997688887   47899998888


Q ss_pred             CCCc--cceeeecccC-CCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC
Q psy443          200 KHTG--PGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ  257 (403)
Q Consensus       200 ~h~~--~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~  257 (403)
                      .|++  +|+||||+++ |++++|||||++.++|+||++|+|||+|++|||+|++|++....
T Consensus        76 ~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~  136 (158)
T COG0652          76 NGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTD  136 (158)
T ss_pred             ccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCcc
Confidence            7877  9999999999 99999999999999999999999999999999999999997654

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=7.8e-39  Score=287.37  Aligned_cols=146  Identities=75%  Similarity=1.180  Sum_probs=135.3

Q ss_pred             CCCccccee--eeccccCCcchhhHHHhhcCCCC------CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443          257 QSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG------FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  328 (403)
Q Consensus       257 ~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g------~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~  328 (403)
                      ..+.+.++|  +|+.+.+|++++||++||++.++      + |+++.||||+|+|+||+||+...++.++.++++..+++
T Consensus         9 i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~   87 (164)
T cd01926           9 IGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPD   87 (164)
T ss_pred             ECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCC
Confidence            344456665  99999999999999999987666      5 99999999999999999998877888889999999999


Q ss_pred             CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      |...++|+++|+|+||+.++++++|||||+++++|+||++|+|||||++|||||++|+++++++++|+++|+|.+
T Consensus        88 e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~  162 (164)
T cd01926          88 ENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIAD  162 (164)
T ss_pred             CCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEE
Confidence            988999999999999999999999999999999999999999999999999999999999999889999999975

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>KOG0881|consensus

Probab=100.00  E-value=3.8e-40  Score=272.94  Aligned_cols=149  Identities=45%  Similarity=0.770  Sum_probs=140.9

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      ..|.++|++|.|.+|||-+.||+||+||.+|+  +.|| |++..||||+++||||||||++ +|+|+.++||.+|+||. 
T Consensus        10 ~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPTG-TGRGGaSIYG~kF~DEi~   85 (164)
T KOG0881|consen   10 PNVTLETSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPTG-TGRGGASIYGDKFEDEIH   85 (164)
T ss_pred             CeEEEeecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCCC-CCCCccccccchhhhhhh
Confidence            56999999999999999999999999999999  8999 9999999999999999999998 99999999999999995 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeeccc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRSD  270 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~d  270 (403)
                      .+++|...|.||||+++||+|+|||||+|.+.++||++|++||||..||+|+.++..+.+ ..++|+.++++...
T Consensus        86 ~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika  160 (164)
T KOG0881|consen   86 SDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA  160 (164)
T ss_pred             hhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence            579999999999999999999999999999999999999999999999999999998875 56788888877654

>KOG0883|consensus

Probab=100.00  E-value=8e-40  Score=315.15  Aligned_cols=142  Identities=45%  Similarity=0.815  Sum_probs=134.3

Q ss_pred             CCcccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCC
Q psy443          258 SGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHT  336 (403)
Q Consensus       258 ~~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~  336 (403)
                      ++...-.|||+.|.+|.+|+||+.||  ++|| |+++.|||.|+|||||||||++ .|.||.|+||.+|.||.. .+.|+
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPTG-TG~GGeSiWgKpFkDEf~~~l~H~  359 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFCSNLSHD  359 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCCC-CCCCCccccCCccccccCCCCCcC
Confidence            34445566999999999999999999  8999 9999999999999999999998 999999999999999986 69999


Q ss_pred             CCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          337 GPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       337 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      .||+|||||+|||+|||||||+++++.|||++||+|||||.|+|+|.+||.+++++ ++|+.+|+|.+
T Consensus       360 gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~  427 (518)
T KOG0883|consen  360 GRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIED  427 (518)
T ss_pred             CcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEee
Confidence            99999999999999999999999999999999999999999999999999999986 89999999964

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.8e-38  Score=280.30  Aligned_cols=137  Identities=53%  Similarity=0.879  Sum_probs=127.9

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||+.||  +.++ |+++.||||+|+|++||||+.+ .+.++.++++.+|++|.. .++|.++|+|
T Consensus         9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~~h~~~G~l   84 (148)
T cd01927           9 IHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKEFEDEFSPSLKHDRPYTL   84 (148)
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCCCcccCCccccccccccCcCCCeEE
Confidence            455999999999999999999  6788 9999999999999999999875 788888999999999976 7889989999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+
T Consensus        85 ~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          85 SMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             EEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            99999999999999999999999999999999999999999999999985 589999999974

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2e-38  Score=279.38  Aligned_cols=136  Identities=49%  Similarity=0.865  Sum_probs=127.5

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+++.||||+|+|++||||+.+ .+.++.++++.+|++|. ..++|+++|+|
T Consensus         9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~~~~~~~~~~~~~e~~~~~~h~~~G~l   84 (146)
T cd01922           9 ITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIHPELKHTGAGIL   84 (146)
T ss_pred             EEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCcccccCCCcccccccCcCCCCCeEE
Confidence            445999999999999999999  6788 9999999999999999999875 67778889999999985 47889999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEe
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCF  402 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~  402 (403)
                      +||+.+|++++|||||+++++|+||++|+|||||++|||||++|+.+++++++|+++|+|.
T Consensus        85 ~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~  145 (146)
T cd01922          85 SMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL  145 (146)
T ss_pred             EEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence            9999999999999999999999999999999999999999999999999888999999996

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=4.7e-38  Score=286.81  Aligned_cols=147  Identities=65%  Similarity=1.076  Sum_probs=134.9

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcC-------CCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTG-------EKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g-------~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      ...+.+.++|  +|+.+.+|++++||++||+|       +.++ |+++.||||+|+|+||+||+....+.++.++++..+
T Consensus        23 ~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~  101 (183)
T PTZ00060         23 SIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKF  101 (183)
T ss_pred             EECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCCCccccccc
Confidence            3344455665  99999999999999999975       3456 999999999999999999998778889999999999


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      ++|...++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+.+++.+++|+++|+|++
T Consensus       102 ~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~  178 (183)
T PTZ00060        102 TDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD  178 (183)
T ss_pred             CCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence            99988999999999999999999999999999999999999999999999999999999999998899999999975

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=8.2e-38  Score=285.65  Aligned_cols=148  Identities=57%  Similarity=0.964  Sum_probs=134.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCC---C--CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK---G--FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  328 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~---g--~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~  328 (403)
                      ...+.+.++|  +|+.+.+|++++||+.||+|+.   |  .+|+++.||||+|+|+|||||+..+++.|+.++++..|++
T Consensus        26 ~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~  105 (186)
T PLN03149         26 TIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFED  105 (186)
T ss_pred             eeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCC
Confidence            3344556666  9999999999999999997643   2  2599999999999999999999877888999999999999


Q ss_pred             CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      |.+..+|+++|+|||++.++++++|||||++.++|+||++|+|||||+ +|||||++|+.++++ +++|+++|+|.+
T Consensus       106 e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~  182 (186)
T PLN03149        106 ENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISE  182 (186)
T ss_pred             cccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            998899999999999999999999999999999999999999999999 799999999999995 589999999975

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=7.9e-38  Score=277.61  Aligned_cols=138  Identities=48%  Similarity=0.766  Sum_probs=127.7

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ...|+|+.+.+|++++||+.||  +.++ |+++.||||+|+|++||||+.+ ++.++.++++.+|++|.. .++|+++|+
T Consensus        11 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~~~~~~G~   86 (153)
T cd01928          11 DIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWGKKFEDEFRETLKHDSRGV   86 (153)
T ss_pred             cEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccCC-CCCCCCccCCCccccccccCCCcCCCcE
Confidence            3455999999999999999999  6788 9999999999999999999875 677888999999999976 578989999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      |+||+.++++++|||||+++++|+||++|+|||||++|||+|++|++++++ +++|+.+|+|.+
T Consensus        87 v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  150 (153)
T cd01928          87 VSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD  150 (153)
T ss_pred             EEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEE
Confidence            999999999999999999999999999999999999999999999999985 589999999963

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=7.4e-38  Score=277.79  Aligned_cols=148  Identities=45%  Similarity=0.733  Sum_probs=136.4

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      |+|+|+|+.|+|+||||++.||++|+||++||  +.+| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|..
T Consensus         1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~   76 (153)
T cd01928           1 MSVTLHTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWGKKFEDEFR   76 (153)
T ss_pred             CEEEEEEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccCC-CCCCCCccCCCccccccc
Confidence            67999999999999999999999999999999  7889 9999999999999999999976 778888888889998875


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                       .+.|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++++. ..++|..+|+|..
T Consensus        77 ~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  150 (153)
T cd01928          77 ETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD  150 (153)
T ss_pred             cCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEE
Confidence             57888999999999999999999999999999999999999999999999999999886 5678888876653

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2e-37  Score=292.22  Aligned_cols=144  Identities=35%  Similarity=0.479  Sum_probs=130.3

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCC--------ccCCceEEeecCC-eEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPN-FMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~--------~Y~g~~f~Rvi~~-f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      ++++.+.++|  +|+.+.+|++++||+.||+|+.+.        +|+++.||||+++ |+||+||+..    ++.+++|.
T Consensus        60 sig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~  135 (249)
T PTZ00221         60 SIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGT  135 (249)
T ss_pred             eeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCC
Confidence            6666777777  999999999999999999876542        3999999999985 8999999864    24567889


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +|++|++.++|+++|+||||+.|||+||||||||+.++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+
T Consensus       136 ~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~  215 (249)
T PTZ00221        136 PIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSF  215 (249)
T ss_pred             cccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999875 689999999974

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=1.6e-37  Score=273.66  Aligned_cols=144  Identities=47%  Similarity=0.801  Sum_probs=133.2

Q ss_pred             EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-Ccc
Q psy443          121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTL  199 (403)
Q Consensus       121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-~~~  199 (403)
                      +|+|+.|+|+||||.+.||++|+||++||  +.|| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|. ..+
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~~~~~~~~~~~~~e~~~~~   76 (146)
T cd01922           1 TLETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIHPEL   76 (146)
T ss_pred             CeEeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCcccccCCCcccccccCc
Confidence            37899999999999999999999999999  7899 9999999999999999999876 67788888888898885 478


Q ss_pred             CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeec
Q psy443          200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLR  268 (403)
Q Consensus       200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~  268 (403)
                      +|.++|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|+++++..++|..+|+|.
T Consensus        77 ~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~  145 (146)
T cd01922          77 KHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL  145 (146)
T ss_pred             CCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence            899999999999999999999999999999999999999999999999999999987777888888664

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.9e-37  Score=273.73  Aligned_cols=144  Identities=51%  Similarity=0.846  Sum_probs=133.3

Q ss_pred             EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-cc
Q psy443          121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TL  199 (403)
Q Consensus       121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-~~  199 (403)
                      +|+|++|+|+||||++.||++|+||++||  +.+| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|.. .+
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~   76 (148)
T cd01927           1 IIHTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKEFEDEFSPSL   76 (148)
T ss_pred             CeEeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCCCcccCCcccccccccc
Confidence            47899999999999999999999999999  7888 9999999999999999999875 788888888888999875 78


Q ss_pred             CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443          200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~  268 (403)
                      .|.++|+|+||++++++++|||||++.++|+||++|+|||||++|||+|++|+++++ ..++|..+|+|.
T Consensus        77 ~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~  146 (148)
T cd01927          77 KHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKII  146 (148)
T ss_pred             CcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEE
Confidence            899899999999999999999999999999999999999999999999999999886 467888888664

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=3.8e-37  Score=274.96  Aligned_cols=138  Identities=47%  Similarity=0.813  Sum_probs=127.9

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ...|+|+.+.+|++++||+.||  +.|+ |+++.||||+|+|++|+||+.+ .+.++.++++.++++|.. .++|+++|+
T Consensus        10 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~g~~~~~~~g~~~~~E~~~~~~h~~~G~   85 (159)
T cd01923          10 DLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFKPNLSHDGRGV   85 (159)
T ss_pred             cEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccCC-CCCCCccccCCccCcccccCcCcCCCcE
Confidence            3455999999999999999999  6888 9999999999999999999975 778889999999999864 678999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      |+||+.++++++|||||+++++|+||++|+|||||++|||+|++|+.++++ +++|+++|+|.+
T Consensus        86 v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  149 (159)
T cd01923          86 LSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIED  149 (159)
T ss_pred             EEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999885 589999999964

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=8.5e-37  Score=272.74  Aligned_cols=146  Identities=45%  Similarity=0.785  Sum_probs=134.7

Q ss_pred             eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-c
Q psy443          120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-T  198 (403)
Q Consensus       120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-~  198 (403)
                      |+|+|+.|+|+||||++.||++|+||++||  +.|| |+++.||||+|++++||||+.+ ++.++.+.++..+++|.. .
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~g~~~~~~~g~~~~~E~~~~   77 (159)
T cd01923           2 VRLHTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFKPN   77 (159)
T ss_pred             EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccCC-CCCCCccccCCccCcccccC
Confidence            789999999999999999999999999999  7899 9999999999999999999976 788888888989988854 6


Q ss_pred             cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      ++|+++|+|+|+++++++++|||||++.++|+||++|+|||||++||++|++|+..+. ..++|..+|++..
T Consensus        78 ~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  149 (159)
T cd01923          78 LSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIED  149 (159)
T ss_pred             cCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence            7898999999999999999999999999999999999999999999999999999875 5678888775554

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0884|consensus

Probab=100.00  E-value=3.1e-37  Score=254.27  Aligned_cols=144  Identities=44%  Similarity=0.702  Sum_probs=134.8

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      |+|+++|..|+|+||||.+.+|++|+||+.||  ...| |+++.|||-+|+||+|+|+++- +|+||.++||.+|++|..
T Consensus         1 msvtlht~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~~-tgrgg~siwg~~fede~~   76 (161)
T KOG0884|consen    1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPTH-TGRGGNSIWGKKFEDEYS   76 (161)
T ss_pred             CeEEEeeccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCCC-CCCCCccccCCcchHHHH
Confidence            67999999999999999999999999999999  7778 9999999999999999999987 999999999999999965


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CCCccccee
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKI  265 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~~~p~~~I  265 (403)
                       -++|+.||+||||+.+|++++|||||+++..|+||.+|+|||+|++|+|.|+.|+..+.  .+.+|..++
T Consensus        77 ~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~  147 (161)
T KOG0884|consen   77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDV  147 (161)
T ss_pred             HHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchhe
Confidence             68999999999999999999999999999999999999999999999999999999875  335666655

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.8e-36  Score=271.31  Aligned_cols=136  Identities=42%  Similarity=0.637  Sum_probs=122.0

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCC-------CCCCCCCC-CCC
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG-------NKFEDENF-TLK  334 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g-------~~~~~e~~-~~~  334 (403)
                      ..|+|+.+.+|++++||++||  +.++ |+++.||||+|+|+|||||+.. .+.++.++++       ..+++|.. .++
T Consensus         9 i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~~-~g~~~~~~~~~~~~~~~~~~~~e~~~~~~   84 (166)
T cd01921           9 LVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLYGRQARFFEPEILPLLK   84 (166)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcCC-CCCCCcccccccccccCcccCcccCCccc
Confidence            445999999999999999999  6788 9999999999999999999975 6677776654       34666754 678


Q ss_pred             CCCCcEEEEecCCCCCCcceEEEEecC-CCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443          335 HTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       335 h~~~G~lsma~~g~~s~gSqFfItl~~-~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      |+++|+|+||+.++++++|||||++.+ +|+||++|+|||||++|||||++|+.++++ +++|+++|+|.
T Consensus        85 h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~  154 (166)
T cd01921          85 HSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK  154 (166)
T ss_pred             cCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEE
Confidence            999999999999999999999999975 799999999999999999999999999985 58999999996

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0883|consensus

Probab=100.00  E-value=6.7e-37  Score=294.99  Aligned_cols=150  Identities=43%  Similarity=0.749  Sum_probs=141.8

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      ..|.++|+.|+|-|||+.|.+|++|+||++||  ++|| |+++.|||.+++||||||||++ +|.||.++||.+|.||. 
T Consensus       278 gyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPTG-TG~GGeSiWgKpFkDEf~  353 (518)
T KOG0883|consen  278 GYVRLVTNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFC  353 (518)
T ss_pred             ceEEEeccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCCC-CCCCCccccCCccccccC
Confidence            67999999999999999999999999999999  9999 9999999999999999999998 99999999999999995 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecccc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRSDV  271 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~d~  271 (403)
                      ..+.|..||+||||++|||+|||||||+++.+.+||.+|++||||+.|+++|++|+++++ ..+.|...|.|....
T Consensus       354 ~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~  429 (518)
T KOG0883|consen  354 SNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAI  429 (518)
T ss_pred             CCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeE
Confidence            589999999999999999999999999999999999999999999999999999999986 457888888665543

>KOG0884|consensus

Probab=100.00  E-value=1.6e-36  Score=249.99  Aligned_cols=138  Identities=46%  Similarity=0.722  Sum_probs=129.3

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ..+|+++.+.+|++||||+.||  ...| |++++|||-+|+|++|.||++. .|.||.++||.+|+||.. -++|+.||+
T Consensus        11 dikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~~-tgrgg~siwg~~fede~~~~lkh~~rg~   86 (161)
T KOG0884|consen   11 DIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPTH-TGRGGNSIWGKKFEDEYSEYLKHNVRGV   86 (161)
T ss_pred             cEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCCC-CCCCCccccCCcchHHHHHHHhhcccee
Confidence            3466999999999999999999  5567 9999999999999999999987 899999999999999986 599999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~--~~P~~~i~I~~  403 (403)
                      |||||.||++|+||||||.++.||||-+|++||+||+|+|.|++||.++.++  -||+.++.|-|
T Consensus        87 vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~  151 (161)
T KOG0884|consen   87 VSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD  151 (161)
T ss_pred             EEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeee
Confidence            9999999999999999999999999999999999999999999999999977  59999888764

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=7.3e-36  Score=268.10  Aligned_cols=146  Identities=75%  Similarity=1.175  Sum_probs=133.8

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-----cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  198 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-----~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~  198 (403)
                      ++.|+|+||||.+.||++|+||++||++.++     ++|+++.||||+|+|++||||+..+++.++.+.++..+++|...
T Consensus        12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~   91 (164)
T cd01926          12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFK   91 (164)
T ss_pred             eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCcc
Confidence            4899999999999999999999999976566     23999999999999999999987667888888889999999888


Q ss_pred             cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +.|+++|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|+++++..++|..+|+|..
T Consensus        92 ~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~  162 (164)
T cd01926          92 LKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIAD  162 (164)
T ss_pred             ccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEE
Confidence            99989999999999999999999999999999999999999999999999999999877778888876643

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>KOG0111|consensus

Probab=100.00  E-value=2.4e-36  Score=272.35  Aligned_cols=155  Identities=64%  Similarity=1.065  Sum_probs=147.9

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCc
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK  185 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~  185 (403)
                      .+.+..+...         ..|+|+++|..|..|.|++||..||+|++||+|.++.||||+|.||+||||+++++|+|+.
T Consensus       139 v~~~ikig~~---------~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggk  209 (298)
T KOG0111|consen  139 VYHDIKIGED---------RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGK  209 (298)
T ss_pred             hhhheeeccc---------ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCc
Confidence            5555566555         7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCccccee
Q psy443          186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI  265 (403)
Q Consensus       186 ~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I  265 (403)
                      ++||..|.+|++.++|..+|+||||++++|+||||||||.....+||++|+|||.|++||+||+++++.++..++|..+|
T Consensus       210 siygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv  289 (298)
T KOG0111|consen  210 SIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKV  289 (298)
T ss_pred             ccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eecc
Q psy443          266 VLRS  269 (403)
Q Consensus       266 ~L~~  269 (403)
                      .|+.
T Consensus       290 ~i~~  293 (298)
T KOG0111|consen  290 KIVE  293 (298)
T ss_pred             EEEe
Confidence            7765

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.5e-35  Score=265.12  Aligned_cols=145  Identities=39%  Similarity=0.587  Sum_probs=126.9

Q ss_pred             EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCC-------Cccc
Q psy443          121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG-------NKFE  193 (403)
Q Consensus       121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~-------~~~~  193 (403)
                      .|+|+.|+|+||||++.||++|+||++||  +.++ |+++.||||+|+|++||||+.. ++.++.+.++       ..++
T Consensus         1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~~-~g~~~~~~~~~~~~~~~~~~~   76 (166)
T cd01921           1 LLETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLYGRQARFFE   76 (166)
T ss_pred             CcEeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcCC-CCCCCcccccccccccCcccC
Confidence            37899999999999999999999999999  7888 9999999999999999999976 6777666554       2355


Q ss_pred             CCC-CccCCCccceeeecccCCCCCcceeEEEecc-CcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          194 DEN-FTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       194 ~e~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~-~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      +|. ..++|+++|+|+||++++++++|||||++.+ .|+||++|+|||||++|||+|++|+++.. ..++|..+|+|..
T Consensus        77 ~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~  155 (166)
T cd01921          77 PEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKH  155 (166)
T ss_pred             cccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence            664 4678989999999999999999999999976 79999999999999999999999999875 4578887775543

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0879|consensus

Probab=100.00  E-value=7.5e-36  Score=250.16  Aligned_cols=153  Identities=54%  Similarity=0.898  Sum_probs=141.7

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-----cccCCCEEEeeeCCeEEEeCcCCCCC
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHN  180 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-----~~Y~~~~f~Rv~~~~~iqgGd~~~~~  180 (403)
                      +|.|..+.+.         ..|+|+||||.|.+|+|++||.+.|+|+-.     .+|++++||||+++|||||||+.+++
T Consensus        13 VF~dv~igg~---------~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD   83 (177)
T KOG0879|consen   13 VFFDVAIGGR---------PIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD   83 (177)
T ss_pred             EEEEEeeCCE---------EcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCC
Confidence            7888888875         899999999999999999999999998432     46999999999999999999999999


Q ss_pred             CCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCC
Q psy443          181 GTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSG  259 (403)
Q Consensus       181 g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~  259 (403)
                      |+|..++++.+|+||+..++|..+|+||||+++++++|.||||+.....+||++|+|||||++|+.++++|+.+++ ..+
T Consensus        84 GtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nn  163 (177)
T KOG0879|consen   84 GTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNN  163 (177)
T ss_pred             CceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 455


Q ss_pred             cccceeee
Q psy443          260 KTSKKIVL  267 (403)
Q Consensus       260 ~p~~~I~L  267 (403)
                      +|.-.+.+
T Consensus       164 kPKl~v~i  171 (177)
T KOG0879|consen  164 KPKLPVVI  171 (177)
T ss_pred             CCCCcEEE
Confidence            66666544

>KOG0882|consensus

Probab=100.00  E-value=1.1e-35  Score=291.59  Aligned_cols=148  Identities=46%  Similarity=0.770  Sum_probs=139.9

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      -.+.+||+.|+|.|.||++.||+||+||-.-|  +.|| |++..||||+++||||+|||.+ +|+||.++||..|+||. 
T Consensus       405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~g-~gtggesiwg~dfedefh  480 (558)
T KOG0882|consen  405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPLG-DGTGGESIWGKDFEDEFH  480 (558)
T ss_pred             cceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCCC-CCCCCcccccccchhhcC
Confidence            46889999999999999999999999999999  8999 9999999999999999999998 99999999999999996 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      ..++|++|-+||||++|||+||||||||..+.|+||++|||||||+.||||+++|+++.+ ..++|..++.|..
T Consensus       481 ~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin  554 (558)
T KOG0882|consen  481 PNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN  554 (558)
T ss_pred             cccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence            479999999999999999999999999999999999999999999999999999999986 4568888886654

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=2e-34  Score=262.95  Aligned_cols=145  Identities=64%  Similarity=1.049  Sum_probs=133.1

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcC-------CCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTG-------EKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g-------~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      |+.|+|+||||.+.||++|+||++||+|       +.++ |+++.||||+|++++||||+...++.++.+.++..+++|.
T Consensus        27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~  105 (183)
T PTZ00060         27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDEN  105 (183)
T ss_pred             EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCcc
Confidence            3689999999999999999999999974       3557 9999999999999999999987678888888888899998


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      ..+.|+++|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|+..++..++|...|+|..
T Consensus       106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~  178 (183)
T PTZ00060        106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD  178 (183)
T ss_pred             ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence            8899999999999999999999999999999999999999999999999999999998887778888876654

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.9e-34  Score=256.61  Aligned_cols=134  Identities=34%  Similarity=0.503  Sum_probs=117.7

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  342 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls  342 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+++.||||+|+||+||||+....+.   ..++.++.+|.....|+++|+||
T Consensus         9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~v~   82 (155)
T cd01920           9 IVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNTRGTIA   82 (155)
T ss_pred             EEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCCceEEE
Confidence            345999999999999999999  7889 99999999999999999998753322   23456788887666678899999


Q ss_pred             EecCC-CCCCcceEEEEecCCCCCCC-----CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443          343 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF  402 (403)
Q Consensus       343 ma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~  402 (403)
                      ||+.+ |++++|||||+++++|+||+     +|+|||+|+||||||++|+++++++     ++|+.+|+|.
T Consensus        83 ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~  153 (155)
T cd01920          83 MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIE  153 (155)
T ss_pred             ECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEE
Confidence            99975 89999999999999999995     7999999999999999999999964     5999999986

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.8e-34  Score=258.76  Aligned_cols=144  Identities=30%  Similarity=0.520  Sum_probs=121.0

Q ss_pred             eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443          120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  199 (403)
Q Consensus       120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~  199 (403)
                      |+|+|+.|+|+|+||++.||++|+||++||  +.+| |+++.||||+|+|++|||++..+.+.   ..++..+.+|....
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~   75 (164)
T PRK10791          2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNG   75 (164)
T ss_pred             EEEEEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCccccc
Confidence            679999999999999999999999999999  7899 99999999999999999997643322   12345677775444


Q ss_pred             CCCccceeeecccC-CCCCcceeEEEeccCcCCC-------C-ceeEEEeEeecccccccccccCCCC-----Cccccee
Q psy443          200 KHTGPGILSMANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKI  265 (403)
Q Consensus       200 ~h~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld-------~-~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I  265 (403)
                      .++.+|+||||+.+ |++++|||||++.++++||       + +|+|||||++|||+|++|+.+.+..     ++|..+|
T Consensus        76 ~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v  155 (164)
T PRK10791         76 LKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDV  155 (164)
T ss_pred             ccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCe
Confidence            45579999999875 8999999999999988776       3 6999999999999999999987643     5787777


Q ss_pred             eecc
Q psy443          266 VLRS  269 (403)
Q Consensus       266 ~L~~  269 (403)
                      .|..
T Consensus       156 ~I~~  159 (164)
T PRK10791        156 IIES  159 (164)
T ss_pred             EEEE
Confidence            5544

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=2.5e-34  Score=257.71  Aligned_cols=135  Identities=31%  Similarity=0.533  Sum_probs=115.2

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIL  341 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~l  341 (403)
                      ...|+|+.+.+|++++||++||  +.+| |+++.||||+|+|+|||||+..+.+.   ..++.++.+|.....|+++|+|
T Consensus        10 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~l   83 (164)
T PRK10791         10 DIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNTRGTL   83 (164)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCCCcEE
Confidence            3456999999999999999999  7889 99999999999999999997643322   2245677777554445579999


Q ss_pred             EEecCC-CCCCcceEEEEecCCCCCC-------C-CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443          342 SMANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF  402 (403)
Q Consensus       342 sma~~g-~~s~gSqFfItl~~~~~Ld-------~-~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~  402 (403)
                      |||+.+ |++|+|||||++.++++||       + +|+|||||+||||||++|+.++++.     ++|+.+|+|.
T Consensus        84 sma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~  158 (164)
T PRK10791         84 AMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_pred             EECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence            999985 9999999999999998886       3 7999999999999999999999964     6999999986

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2.1e-34  Score=263.92  Aligned_cols=146  Identities=32%  Similarity=0.496  Sum_probs=124.8

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|+|+|+.|+|+||||++.||++|+||++||  +.|| |+++.||||+|+||+|||++....+ +  ..++.++.+|..
T Consensus        29 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~-~--~~~~~~~~~e~~  102 (190)
T PRK10903         29 PHVLLTTSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ-Q--KKPNPPIKNEAD  102 (190)
T ss_pred             cEEEEEeccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC-C--CCCCCcccCccc
Confidence            67999999999999999999999999999999  8899 9999999999999999999875321 1  223556777766


Q ss_pred             ccCCCccceeeecccC-CCCCcceeEEEeccCcCCCC-----ceeEEEeEeecccccccccccCCCC-----Ccccceee
Q psy443          198 TLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIV  266 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~-----~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~  266 (403)
                      ...|+++|+|+||+++ +++++|||||++.++++||.     +|+|||+|++|||||++|+++++..     +.|..+|.
T Consensus       103 ~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~  182 (190)
T PRK10903        103 NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV  182 (190)
T ss_pred             ccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence            6667789999999865 89999999999999999984     8999999999999999999987643     46666665


Q ss_pred             ecc
Q psy443          267 LRS  269 (403)
Q Consensus       267 L~~  269 (403)
                      |.+
T Consensus       183 I~~  185 (190)
T PRK10903        183 ILS  185 (190)
T ss_pred             EEE
Confidence            543

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=2.9e-34  Score=259.30  Aligned_cols=137  Identities=40%  Similarity=0.689  Sum_probs=126.0

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ...|+|+.+.+|++++||+.||  +.++ |+++.||||+|+|++||||+.+ .+.++.++++.+|++|.. .++|+++|+
T Consensus        16 ~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~~-~g~g~~s~~g~~~~~E~~~~~~~~~~G~   91 (171)
T cd01925          16 DIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEFHSRLRFNRRGL   91 (171)
T ss_pred             cEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccCC-CCccCcccCCCccCcccccCcCCCCCcE
Confidence            4456999999999999999999  6788 9999999999999999999875 788889999999999876 578999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      |+||+.++++++|||||+++++|+||++|+|||||+ ++|++|++|+.++++ +++|+.+|+|.
T Consensus        92 l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~  155 (171)
T cd01925          92 VGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKIT  155 (171)
T ss_pred             EEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEE
Confidence            999999999999999999999999999999999999 468889999999996 48999999986

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=3.1e-34  Score=262.81  Aligned_cols=136  Identities=33%  Similarity=0.568  Sum_probs=118.5

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIL  341 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~l  341 (403)
                      ...|+|+.+.+|++++||++||  +.|| |+++.||||+|+|++||||+....+   ...++.++.+|.....|+.+|+|
T Consensus        39 ~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l~~~~G~l  112 (190)
T PRK10903         39 NIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNTRGTI  112 (190)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccCcCCCcEE
Confidence            3456999999999999999999  7899 9999999999999999999865322   12346678888766667889999


Q ss_pred             EEecCC-CCCCcceEEEEecCCCCCCC-----CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443          342 SMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~  403 (403)
                      +|||.+ |++|+|||||+++++++||+     +|+|||+|++|||||++|+.+++++     ++|+.+|+|.+
T Consensus       113 ama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  185 (190)
T PRK10903        113 AMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS  185 (190)
T ss_pred             EeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEE
Confidence            999865 99999999999999999994     8999999999999999999999864     69999999963

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=4.1e-34  Score=258.34  Aligned_cols=149  Identities=37%  Similarity=0.615  Sum_probs=133.2

Q ss_pred             ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      +..|+|+|++|+|+||||.+.||++|+||++||  +++| |+++.||||+|+|++|||++.+ ++.++.++++..+++|.
T Consensus         5 ~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~~-~g~g~~s~~g~~~~~E~   80 (171)
T cd01925           5 TGKVILKTTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEF   80 (171)
T ss_pred             ccEEEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccCC-CCccCcccCCCccCccc
Confidence            467999999999999999999999999999999  7888 9999999999999999999876 78888888898999886


Q ss_pred             C-ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee-cccccccccccCC-CCCcccceeeecc
Q psy443          197 F-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE-GLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~-~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie-G~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      . .+.|+++|+|+||++++++++|||||++++.|+||++|+|||||++ +++++++|+.+.. ..++|..+++|..
T Consensus        81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~  156 (171)
T cd01925          81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITS  156 (171)
T ss_pred             ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEE
Confidence            5 5778999999999999999999999999999999999999999983 5778899998875 4567777664443

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=2.3e-34  Score=256.01  Aligned_cols=140  Identities=33%  Similarity=0.482  Sum_probs=119.7

Q ss_pred             EEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCC
Q psy443          122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKH  201 (403)
Q Consensus       122 ~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h  201 (403)
                      |+|+.|+|+||||++.||++|+||++||  +.|| |+++.||||+|+||+|||++....+.   ..++..+.+|.....|
T Consensus         2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~   75 (155)
T cd01920           2 FQTSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLS   75 (155)
T ss_pred             cEecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCccccccc
Confidence            7899999999999999999999999999  8899 99999999999999999998763222   2234567777666666


Q ss_pred             CccceeeecccC-CCCCcceeEEEeccCcCCCC-----ceeEEEeEeecccccccccccCCCC-----Ccccceeee
Q psy443          202 TGPGILSMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVL  267 (403)
Q Consensus       202 ~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~-----~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~L  267 (403)
                      +++|+|+||+++ +++++|||||++.++++||.     +|+|||+|++||+||++|+++++..     +.|..+|+|
T Consensus        76 ~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i  152 (155)
T cd01920          76 NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII  152 (155)
T ss_pred             CCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEE
Confidence            789999999865 89999999999999999995     7999999999999999999988744     355555544

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=2.5e-34  Score=262.76  Aligned_cols=145  Identities=58%  Similarity=0.966  Sum_probs=131.6

Q ss_pred             eeeeEEEEEcCCCChhhHHhHHHhhcCCC---C--cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443          125 YRKGFKGRLRSDVVPKTAENFRALCTGEK---G--FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  199 (403)
Q Consensus       125 ~~G~i~ieL~~d~aP~~~~nF~~L~~g~~---g--~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~  199 (403)
                      +.|+|+||||.+.||++|+||++||+++.   |  .+|+++.||||+|+|+|||||+..+++.|+.+.++..+++|....
T Consensus        31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~  110 (186)
T PLN03149         31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIA  110 (186)
T ss_pred             ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccccc
Confidence            68999999999999999999999997532   2  249999999999999999999876688888888888999998889


Q ss_pred             CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEe-ecccccccccccCC-CCCcccceeeecc
Q psy443          200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVi-eG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      .|+++|+|+|+++++++++|||||++.++|+||++|+|||||+ +||+||++|+++++ ..++|...|.|..
T Consensus       111 ~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~  182 (186)
T PLN03149        111 KHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISE  182 (186)
T ss_pred             ccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            9999999999999999999999999999999999999999999 79999999999987 5678888876654

>KOG0865|consensus

Probab=100.00  E-value=1.9e-34  Score=256.21  Aligned_cols=148  Identities=72%  Similarity=1.195  Sum_probs=139.7

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEe---ecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHR---VIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  330 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~R---vi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~  330 (403)
                      +...+|.+++  +|+.+..|++++||..||+|+++++|+++.|||   .+++|++||||.+..+++||.++|++.|+||+
T Consensus        11 ~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den   90 (167)
T KOG0865|consen   11 AIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN   90 (167)
T ss_pred             eecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence            3446666665  999999999999999999999999999999999   34479999999999999999999999999999


Q ss_pred             CCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       331 ~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +.++|..+|+|||||+|||+|+|||||++.+..|||++|+|||+|.|||+++++|+...+.+++|.++|.|.|
T Consensus        91 FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~d  163 (167)
T KOG0865|consen   91 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIAD  163 (167)
T ss_pred             cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=6.2e-33  Score=261.77  Aligned_cols=148  Identities=33%  Similarity=0.446  Sum_probs=128.4

Q ss_pred             eeeEEEEe-----eeeEEEEEcCCCChhhHHhHHHhhcCCCCc--------ccCCCEEEeeeCC-eEEEeCcCCCCCCCC
Q psy443          118 LANAIHWY-----RKGFKGRLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPN-FMCQGGDFTNHNGTG  183 (403)
Q Consensus       118 ~~v~~~T~-----~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~--------~Y~~~~f~Rv~~~-~~iqgGd~~~~~g~g  183 (403)
                      ..|.|+|+     .|+|+||||.+.||+||+||++||+|..++        +|+++.||||+++ ++||+||+..    +
T Consensus        53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~  128 (249)
T PTZ00221         53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----F  128 (249)
T ss_pred             CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----C
Confidence            45777766     567999999999999999999999875532        2999999999985 8999999864    2


Q ss_pred             CcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCccc
Q psy443          184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTS  262 (403)
Q Consensus       184 ~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~  262 (403)
                      +.+.+|..+++|...++|+++|+|+|+++++++++||||||+.++|+||++|+|||||++||+||++|++++. ..++|.
T Consensus       129 g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~  208 (249)
T PTZ00221        129 NVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPL  208 (249)
T ss_pred             CccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCC
Confidence            3355688899999999999999999999999999999999999999999999999999999999999999875 467888


Q ss_pred             ceeeecc
Q psy443          263 KKIVLRS  269 (403)
Q Consensus       263 ~~I~L~~  269 (403)
                      ..|.|..
T Consensus       209 ~~V~I~~  215 (249)
T PTZ00221        209 LPVTVSF  215 (249)
T ss_pred             CCeEEEE
Confidence            7774444

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.2e-32  Score=240.59  Aligned_cols=136  Identities=57%  Similarity=0.846  Sum_probs=122.7

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCC-CCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK-HTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~-h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.++ |+++.||||+|+|++|+||+......+  +.++..+++|..... |+++|+|
T Consensus         9 i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~~~G~v   83 (146)
T cd00317           9 IVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTL   83 (146)
T ss_pred             EEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcCCCcEE
Confidence            345999999999999999999  5667 999999999999999999987754332  456778888887665 8999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +|++.++++++|||||++.++|+||++|+|||||++|||+|++|+..+++ +++|+++|+|.+
T Consensus        84 ~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          84 SMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             EEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            99999999999999999999999999999999999999999999999997 699999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.98  E-value=2.8e-32  Score=247.07  Aligned_cols=136  Identities=35%  Similarity=0.539  Sum_probs=111.5

Q ss_pred             CcccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCC--------------------CCC
Q psy443          259 GKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG--------------------TGG  318 (403)
Q Consensus       259 ~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g--------------------~gg  318 (403)
                      +.....|+|+.+.+|.+++||++||  +.+| |+++.||||+|+||+||||+.....                    ..+
T Consensus         5 ~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~   81 (176)
T cd01924           5 DNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQK   81 (176)
T ss_pred             ccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCC
Confidence            3344556999999999999999999  7899 9999999999999999999975311                    123


Q ss_pred             cccCCCCCC-----CCCCCCCCCCCcEEEEecCC--CCCCcceEEEEec-------CCCCCCCCceEEEEEEecHHHHHH
Q psy443          319 KSIYGNKFE-----DENFTLKHTGPGILSMANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDVVKK  384 (403)
Q Consensus       319 ~~~~g~~~~-----~e~~~~~h~~~G~lsma~~g--~~s~gSqFfItl~-------~~~~Ld~~~~vfG~VieG~dvl~~  384 (403)
                      .++++..++     ++.....|+.+|+|||||.+  |++++|||||+++       ++|+||++|+|||+|+||||||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~  161 (176)
T cd01924          82 QPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRE  161 (176)
T ss_pred             CCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHh
Confidence            345555543     45567788899999999998  7999999999998       789999999999999999999999


Q ss_pred             HHhCCCCCCCccccEEEe
Q psy443          385 LESMGSQSGKTSKKIVCF  402 (403)
Q Consensus       385 i~~~~t~~~~P~~~i~I~  402 (403)
                      |+..     ..+..++|+
T Consensus       162 I~~g-----d~i~~~~~~  174 (176)
T cd01924         162 LKVG-----DKIESARVV  174 (176)
T ss_pred             hcCC-----CEEEEEEEe
Confidence            9753     335555553

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.98  E-value=2e-32  Score=248.14  Aligned_cols=128  Identities=34%  Similarity=0.526  Sum_probs=110.2

Q ss_pred             EEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCC-------------------
Q psy443          123 HWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG-------------------  183 (403)
Q Consensus       123 ~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g-------------------  183 (403)
                      .|++|+|+||||++.||++|+||++||  +.+| |+++.||||+|+||+||||+... +.+                   
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~p~e~~~~   78 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTIPLEIKPE   78 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccccceeccc
Confidence            489999999999999999999999999  8999 99999999999999999998763 211                   


Q ss_pred             --CcccCCCcc-----cCCCCccCCCccceeeecccC--CCCCcceeEEEec-------cCcCCCCceeEEEeEeecccc
Q psy443          184 --GKSIYGNKF-----EDENFTLKHTGPGILSMANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDV  247 (403)
Q Consensus       184 --~~~~~~~~~-----~~e~~~~~h~~~G~ls~a~~~--~~~~~SqFfI~l~-------~~~~Ld~~~~VFGrVieG~dv  247 (403)
                        +.+.++..+     .++...+.|+++|+|+||+++  +++++|||||+++       ++|+||++|+|||||++||||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv  158 (176)
T cd01924          79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI  158 (176)
T ss_pred             CCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH
Confidence              223344333     244566788889999999987  6999999999998       789999999999999999999


Q ss_pred             ccccccc
Q psy443          248 VKKLESM  254 (403)
Q Consensus       248 l~~i~~~  254 (403)
                      |++|+..
T Consensus       159 l~~I~~g  165 (176)
T cd01924         159 LRELKVG  165 (176)
T ss_pred             HHhhcCC
Confidence            9999754

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.98  E-value=5.9e-32  Score=237.90  Aligned_cols=143  Identities=53%  Similarity=0.806  Sum_probs=127.0

Q ss_pred             EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccC
Q psy443          121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK  200 (403)
Q Consensus       121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~  200 (403)
                      .++|+.|+|+||||++.||++|+||++||  +.++ |+++.|||++|++++|+|++......+  +.++..+++|.....
T Consensus         1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~   75 (146)
T cd00317           1 TLDTTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLK   75 (146)
T ss_pred             CeEeccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCc
Confidence            37899999999999999999999999999  7778 999999999999999999988743322  344677888877665


Q ss_pred             -CCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeec
Q psy443          201 -HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLR  268 (403)
Q Consensus       201 -h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~  268 (403)
                       |+++|+|+|++.++++++|||||++.+.++||++|+|||||++||++|++|+..++. .++|..+|.|.
T Consensus        76 ~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317          76 YHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             CcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence             888999999999999999999999999999999999999999999999999999874 77888887653

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.97  E-value=3e-30  Score=229.22  Aligned_cols=137  Identities=43%  Similarity=0.713  Sum_probs=117.4

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCC-cccCCCCCCCCCC-CCCCCCCcE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg-~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ..|+|+.+.+|++++||++||  +.++ |+++.|||++|++++|+||+......+. ....+.++++|.. ...++++|+
T Consensus        12 i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~G~   88 (155)
T PF00160_consen   12 IVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKHRRGL   88 (155)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSSSTTE
T ss_pred             EEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccccccccccccccee
Confidence            344999999999999999999  5667 9999999999999999999876443211 1233446888874 334448999


Q ss_pred             EEEecCC--CCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          341 LSMANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g--~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      |+|++.+  +++++|||||++.++|+||++|+|||+|++||++|++|+..++++ +|.++|+|.+
T Consensus        89 v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~  152 (155)
T PF00160_consen   89 VSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISS  152 (155)
T ss_dssp             EEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEE
T ss_pred             eeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEE
Confidence            9999986  899999999999999999999999999999999999999999988 9999999974

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.96  E-value=7.2e-30  Score=226.76  Aligned_cols=146  Identities=41%  Similarity=0.662  Sum_probs=123.0

Q ss_pred             eEEEEe-eeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCC-cccCCCcccCCCC
Q psy443          120 NAIHWY-RKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYGNKFEDENF  197 (403)
Q Consensus       120 v~~~T~-~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~-~~~~~~~~~~e~~  197 (403)
                      ++|+|+ +|+|+||||++.||++|+||++||  +.++ |+++.|||++|++++|+|++......+. ....+.++++|..
T Consensus         2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~   78 (155)
T PF00160_consen    2 VDIETSGLGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFN   78 (155)
T ss_dssp             EEEEETTEEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGB
T ss_pred             EEEEeCCccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCccccccccc
Confidence            689996 999999999999999999999999  6777 9999999999999999999877433111 1223446778874


Q ss_pred             -ccCCCccceeeecccC--CCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          198 -TLKHTGPGILSMANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~--~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                       ...++++|+|+|++.+  +++++|||||++.+.++||++|+|||+|++||++|++|+..++.. +|..+|.|..
T Consensus        79 ~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~  152 (155)
T PF00160_consen   79 PSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISS  152 (155)
T ss_dssp             TTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEE
T ss_pred             cccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEE
Confidence             3444479999999875  888999999999999999999999999999999999999987665 7777776543

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0885|consensus

Probab=99.96  E-value=3.6e-30  Score=247.77  Aligned_cols=143  Identities=35%  Similarity=0.625  Sum_probs=127.5

Q ss_pred             cceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCC
Q psy443          116 QSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE  195 (403)
Q Consensus       116 ~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e  195 (403)
                      .+..|.+.|+.|+|.||||...||.+|+||++||  ..|| |+++.|||++|+|.+|||||++ +|+||.++||.+|.+|
T Consensus        11 ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~~-~gtGgesiyg~~fadE   86 (439)
T KOG0885|consen   11 TTGKVILKTTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPTG-TGTGGESIYGRPFADE   86 (439)
T ss_pred             ccceEEEEeccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCCC-CCCCccccccccchhh
Confidence            3467999999999999999999999999999999  8899 9999999999999999999998 9999999999999999


Q ss_pred             C-CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee-cccccccccccCCC-CCccc
Q psy443          196 N-FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE-GLDVVKKLESMGSQ-SGKTS  262 (403)
Q Consensus       196 ~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie-G~dvl~~i~~~~t~-~~~p~  262 (403)
                      . .++.+.++|+|+||+.+.+.||||||+||+++|+|+.+|++||+|+. -.-.+.+|..+... +.+|.
T Consensus        87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~  156 (439)
T KOG0885|consen   87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV  156 (439)
T ss_pred             cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence            5 57999999999999999999999999999999999999999999985 24445556555433 34443

>KOG0415|consensus

Probab=99.96  E-value=4.2e-30  Score=245.52  Aligned_cols=146  Identities=38%  Similarity=0.564  Sum_probs=132.2

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcc-----
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF-----  192 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~-----  192 (403)
                      |.|+|+|++|+|+|+||.+.+|.+|.|||+||  +..| |+.|.||.|.++|.+|.|||++ +|.||.++|+.-+     
T Consensus         1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~lyG~q~r   76 (479)
T KOG0415|consen    1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLYGEQAR   76 (479)
T ss_pred             CcEEEEeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCCC-CCCCcceeeeecccccch
Confidence            67999999999999999999999999999999  8888 9999999999999999999998 9999999987543     


Q ss_pred             --cCC-CCccCCCccceeeecccCCCCCcceeEEEeccC-cCCCCceeEEEeEeecccccccccccC-CCCCcccceeee
Q psy443          193 --EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKT-AWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVL  267 (403)
Q Consensus       193 --~~e-~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~-~~Ld~~~~VFGrVieG~dvl~~i~~~~-t~~~~p~~~I~L  267 (403)
                        +.| ...++|.+.|+|||++.+.|.+||||||||+++ ..||++|+|||+|+||||+|.+|+.+- ...+.|..+|.|
T Consensus        77 ffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI  156 (479)
T KOG0415|consen   77 FFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRI  156 (479)
T ss_pred             hhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceee
Confidence              334 357999999999999999999999999999774 899999999999999999999998876 456688777743

>KOG0885|consensus

Probab=99.96  E-value=6e-30  Score=246.22  Aligned_cols=138  Identities=37%  Similarity=0.666  Sum_probs=127.2

Q ss_pred             ccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCc
Q psy443          261 TSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPG  339 (403)
Q Consensus       261 p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G  339 (403)
                      ....|+|-...||++|+||+.||  -.|| |+|+.|||++|+|.+|||||++ +|+||.+|||.+|.+|.. +++.++||
T Consensus        22 G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~~-~gtGgesiyg~~fadE~h~Rlrf~rrG   97 (439)
T KOG0885|consen   22 GDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPTG-TGTGGESIYGRPFADEFHPRLRFNRRG   97 (439)
T ss_pred             CceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCCC-CCCCccccccccchhhcCcceeeeccc
Confidence            34566999999999999999999  6899 9999999999999999999988 999999999999999976 68999999


Q ss_pred             EEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443          340 ILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       340 ~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      +|+|||.+.+.||||||+||+++|+|+++|++||+|+ +-.-.+.+|..+.++ +.||..+-+|.
T Consensus        98 lvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~  162 (439)
T KOG0885|consen   98 LVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIK  162 (439)
T ss_pred             eeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCcccee
Confidence            9999999999999999999999999999999999999 467788889888887 58998887765

>KOG0865|consensus

Probab=99.95  E-value=1.1e-28  Score=219.41  Aligned_cols=154  Identities=68%  Similarity=1.124  Sum_probs=142.9

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEe---eeCCeEEEeCcCCCCCCC
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHR---VIPNFMCQGGDFTNHNGT  182 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~R---v~~~~~iqgGd~~~~~g~  182 (403)
                      +|+|..+.+.         ++|++.++|+.|..|+|++||..||+|+++++|.+..|||   .+++||+||||++..+++
T Consensus         6 vf~d~~~~~~---------p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngt   76 (167)
T KOG0865|consen    6 VFFDIAIDGE---------PLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGT   76 (167)
T ss_pred             eeeeeeecCc---------cccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCc
Confidence            6777777765         8899999999999999999999999999999999999999   344799999999999999


Q ss_pred             CCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCccc
Q psy443          183 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTS  262 (403)
Q Consensus       183 g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~  262 (403)
                      |+.+++++.|+||+..++|..+|.||||+.+||+++||||||.....+||++|+|||+|.+||+++++++..++..+++.
T Consensus        77 ggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~  156 (167)
T KOG0865|consen   77 GGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTS  156 (167)
T ss_pred             cceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             ceeeec
Q psy443          263 KKIVLR  268 (403)
Q Consensus       263 ~~I~L~  268 (403)
                      .+|.+.
T Consensus       157 ~~i~i~  162 (167)
T KOG0865|consen  157 KKITIA  162 (167)
T ss_pred             ccEEEe
Confidence            766543

>KOG0415|consensus

Probab=99.95  E-value=3e-28  Score=232.90  Aligned_cols=135  Identities=41%  Similarity=0.633  Sum_probs=123.3

Q ss_pred             eeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC-------CCCCCCC-CCCCC
Q psy443          265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN-------KFEDENF-TLKHT  336 (403)
Q Consensus       265 I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~-------~~~~e~~-~~~h~  336 (403)
                      |.|+...+|.+|.||++||  +..| |+.+.||.|.++|++|.|||++ .|.||.++|+.       .|+.|.. .++|.
T Consensus        14 IDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~lyG~q~rffeaE~~p~l~Hs   89 (479)
T KOG0415|consen   14 IDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLYGEQARFFEAEFLPKLKHS   89 (479)
T ss_pred             eeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCCC-CCCCcceeeeecccccchhhhhhhccccccc
Confidence            4899999999999999999  8888 9999999999999999999998 99999999863       4666764 79999


Q ss_pred             CCcEEEEecCCCCCCcceEEEEecCC-CCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          337 GPGILSMANAGPNTNGSQFFITTVKT-AWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       337 ~~G~lsma~~g~~s~gSqFfItl~~~-~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +.|+|||++.|.|-+||||||||+++ .+|||+|+|||+|.||||+|.+|+..-.+ +++|.++|+|.+
T Consensus        90 k~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~H  158 (479)
T KOG0415|consen   90 KMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKH  158 (479)
T ss_pred             ccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeee
Confidence            99999999999999999999999876 89999999999999999999999876554 589999999963

>KOG4279|consensus

Probab=99.94  E-value=1.9e-27  Score=244.71  Aligned_cols=86  Identities=35%  Similarity=0.594  Sum_probs=76.8

Q ss_pred             ChHHhhhhcCCCCCCEEEeeceEeeeeeecccccchhhHHHHHHhhhhcceecccccccchhhhhhhhcC-CcchhHHHH
Q psy443            1 MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNK-NDDRERATQ   79 (403)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~l~   79 (403)
                      +++++||++++++|||||||||||||||++|+|+|++||+.||+|||||||+||++|||||+|+||++.. .+.....++
T Consensus       265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq  344 (1226)
T KOG4279|consen  265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQ  344 (1226)
T ss_pred             HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHH
Confidence            3678999999999999999999999999999999999999999999999999999999999988887755 777777777


Q ss_pred             HHHHHHH
Q psy443           80 MIEKALE   86 (403)
Q Consensus        80 ia~~~~~   86 (403)
                      .+...+.
T Consensus       345 ~IgmkLn  351 (1226)
T KOG4279|consen  345 QIGMKLN  351 (1226)
T ss_pred             HHHHHHH
Confidence            6654443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=99.82  E-value=7.5e-22  Score=196.34  Aligned_cols=82  Identities=37%  Similarity=0.613  Sum_probs=71.9

Q ss_pred             ChHHhhhhcCCCCCCEEEeeceEeeeeeecccccchhhHHHHHHhhhhcceecccccccchhhhhhhhcCC-cchhHHHH
Q psy443            1 MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKN-DDRERATQ   79 (403)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~l~   79 (403)
                      +|+++|++++++.|||||||||||||+|++|+++|++++|+||+||||||+++|++|+|||+|+||++... +.....++
T Consensus       204 il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~  283 (374)
T PF13281_consen  204 ILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELR  283 (374)
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999888887774 44433444


Q ss_pred             HHH
Q psy443           80 MIE   82 (403)
Q Consensus        80 ia~   82 (403)
                      .+.
T Consensus       284 ~i~  286 (374)
T PF13281_consen  284 KIG  286 (374)
T ss_pred             HHH
Confidence            444

>PRK00969 hypothetical protein; Provisional

Probab=99.39  E-value=6.5e-12  Score=127.44  Aligned_cols=226  Identities=17%  Similarity=0.207  Sum_probs=160.6

Q ss_pred             ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      ..+..+.|++|+|+|||-  .++.+++.|++..  +.   |.+...|+-.++-++.|--++.             +..+.
T Consensus        50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~y--k~---~e~~~i~W~s~~~vAfGp~~s~-------------l~p~~  109 (508)
T PRK00969         50 TKKYRIKTTKGEIVIELT--EENESVDFWLENY--KE---FEGKSLRWTSRSAVAFGPFESD-------------LEPSR  109 (508)
T ss_pred             cceEEEEccCceEEEEEc--cCcchhhHHHHhH--Hh---hcCCceEeccccceeEcccccC-------------ccccc
Confidence            367899999999999998  4667788888887  33   7899999998888776543322             22222


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCC--ceeEEEeEeecccccccccccCCCCC-cccc----------
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDN--RHVVFGSVVEGLDVVKKLESMGSQSG-KTSK----------  263 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~--~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~----------  263 (403)
                      ... ...++.|.+.-++-+...+.+.|+..+...--+  .--+||+|+.|..+|+++.....+.. +|+.          
T Consensus       110 ~~~-~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~I~sIEPVie~~e~~~~~~  188 (508)
T PRK00969        110 EEY-EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDRIISIEPVIEWKETSDYLV  188 (508)
T ss_pred             Ccc-eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCeEEEEeeeEEehhcccceE
Confidence            222 334899999999988888988888766321111  12799999999999999877543221 2211          


Q ss_pred             ----------------eeeecc-ccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          264 ----------------KIVLRS-DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       264 ----------------~I~L~~-d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                                      .+++-- ..+|.++|||+.+.  +.|.       ++|         |...+.-.+..+..|...
T Consensus       189 TtDl~~~LEdG~~IfTy~eve~~~~~p~s~EH~la~~--~~G~-------f~V---------d~~tstfI~d~~L~g~~~  250 (508)
T PRK00969        189 TTDLSTVLEDGMKIFTYVEVELDPGAPKSVEHFLALL--EDGT-------FEV---------DFETSTFIADDRLQGLKI  250 (508)
T ss_pred             EecCCccccCCCEEEEEEEEEEcCCCCchHHHHHHHH--hCCe-------EEE---------eeeecceEeeccccCccC
Confidence                            112222 36999999999999  7776       555         333333344455666777


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE  386 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~  386 (403)
                      +.|++..+  ++|+|++.+.|.++.  ..||...+.+. .-.|+|+|+|++|||+++--+
T Consensus       251 p~En~~~R--~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~  305 (508)
T PRK00969        251 PEENFEPR--RRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK  305 (508)
T ss_pred             CccccCcc--ccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence            77776544  479999999997765  69999988764 567999999999999987554

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=99.35  E-value=1.5e-11  Score=124.50  Aligned_cols=226  Identities=15%  Similarity=0.215  Sum_probs=160.7

Q ss_pred             ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      ..+..+.|++|+|+|+|-.  ...+++.|++.+  +.   |.+...|+..++-++.|--+..             ++...
T Consensus        46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y--~~---~e~~~i~W~s~~~vAfGp~~sd-------------l~p~~  105 (503)
T TIGR03268        46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIY--KE---LEGKQIRWTTPQEVAFGPFPSD-------------LEPSR  105 (503)
T ss_pred             cceEEEEccCceEEEEecC--CchHHHHHHHHH--Hh---hcCCceeecchhheeeCcccCC-------------ccccC
Confidence            3779999999999999983  567888888887  33   7888999998887775543221             22222


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCC---CCceeEEEeEeecccccccccccCCCCC-cccc---------
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL---DNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSK---------  263 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~L---d~~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~---------  263 (403)
                      .. ..+.++.|.+.-++-+...+.+.|+..+....   ....-+||+|+.|..+|+++.....+.. +|+.         
T Consensus       106 ~~-~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D~I~sIEPvie~~~~~~~~  184 (503)
T TIGR03268       106 EP-SEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGDQIISIEPVIERKEIVDSA  184 (503)
T ss_pred             Cc-ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCCeEEEEeeeeeehhcccce
Confidence            22 23448999999999888999998888664321   1245799999999999999876543221 2211         


Q ss_pred             -----------------eeeec-cccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443          264 -----------------KIVLR-SDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK  325 (403)
Q Consensus       264 -----------------~I~L~-~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~  325 (403)
                                       .+++- ...+|.++|||+.+.  +.|.       ++|         |...+.-.+.....|..
T Consensus       185 ~TtDl~~~LEdG~~IfTy~evE~~~~~p~s~EH~la~~--~~G~-------~~V---------d~~tsTfi~d~~L~g~~  246 (503)
T TIGR03268       185 TTTDLSTVLEDGDRIFTYVEVELDPNAPVSVEHFLALM--EDGT-------FRV---------DYRTSTFISDDSLRGLD  246 (503)
T ss_pred             EEecCCccccCCCEEEEEEEEEEcCCCChhHHHHHHHH--hCCe-------EEE---------eeeecceEecccccCcc
Confidence                             11222 356999999999999  7776       555         33333333445556667


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443          326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE  386 (403)
Q Consensus       326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~  386 (403)
                      .+.|+...+  ++|+|++.+.|.+..  ..||...+.+. .-.|+|+|+|++|||+++--+
T Consensus       247 ~p~En~~~R--~rGtVTVRn~G~G~G--~VYIYredr~s-s~sHtvVG~V~~GiELid~a~  302 (503)
T TIGR03268       247 KPEENIEKR--RRGAVTVRNSGVGEG--RVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ  302 (503)
T ss_pred             CCccccCcc--cceeEEEEeeccCce--eEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence            777765433  479999999997765  69999888764 567999999999999987554

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.5e-07  Score=92.61  Aligned_cols=225  Identities=19%  Similarity=0.276  Sum_probs=145.1

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      -+..|.|+.|+|.|+|-+.  -.+..+|...|  +.   |.++.+|+..|.-++.|. +.. +         ..+..+  
T Consensus        51 d~~~IktttG~i~ielt~~--~~e~k~~~e~y--ke---l~~~~i~Wts~~eva~Gp-~~~-d---------le~s~e--  110 (512)
T COG4070          51 DEYRIKTTTGEIRIELTDE--SVEGKRWAEHY--KE---LEGTYIRWTSPEEVAFGP-FEA-D---------LEPSRE--  110 (512)
T ss_pred             ceEEEEccCCcEEEEeccc--cchhHHHHHHH--Hh---ccCceEEecChhHccccc-ccc-c---------cccccc--
Confidence            3478899999999999763  24556777788  33   899999999998877543 221 0         111111  


Q ss_pred             ccCCCccceeeecccCCCCCcceeEEEeccCc-CCCCceeEEEeEeecccccccccccCCCCC-cccc------------
Q psy443          198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTA-WLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSK------------  263 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~-~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~------------  263 (403)
                       -....+-.+-|..++-+...+.|.|+-.... ..--..-..|+|+.|-.+++++.+...+.. +|+.            
T Consensus       111 -~~ef~~~dvvl~l~g~dpdethiiiskkr~~~~Yg~~~d~~G~Vv~Gr~lidrL~~gd~i~~iEPivE~k~~ve~~~tT  189 (512)
T COG4070         111 -TGEFEAFDVVLSLSGFDPDETHIIISKKRHVAEYGAPEDIHGRVVGGRNLIDRLSRGDPILSIEPIVERKQLVEKTCTT  189 (512)
T ss_pred             -ccccccceEEEEccCCCCCcceEEEEecceeeEecCCccccceEecchhhhhHhccCCceeeeechhhhhhhhhheeec
Confidence             1122245566777777777788888654422 111111345899999999998876543211 2211            


Q ss_pred             ----------ee----ee-ccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443          264 ----------KI----VL-RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  328 (403)
Q Consensus       264 ----------~I----~L-~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~  328 (403)
                                +|    ++ ++..+|+++++|+.|.  +.|-       .||         |.+.+.-.+..+....+.+.
T Consensus       190 dLd~~LEdgdrifTy~eve~s~nsP~saEH~lalm--edG~-------lri---------~~~tntfis~~~lq~~~~~~  251 (512)
T COG4070         190 DLDTILEDGDRIFTYFEVELSRNSPKSAEHFLALM--EDGT-------LRI---------DVTTNTFISDDTLQEEKVPE  251 (512)
T ss_pred             ccccccccCCEEEEEEEEEeCCCCchhHHHHHHHh--hcce-------EEE---------EEeccceeeccccccccCCh
Confidence                      11    11 2334999999999999  7775       555         23222333334445566666


Q ss_pred             CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443          329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE  386 (403)
Q Consensus       329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~  386 (403)
                      |++..+  .||.++..|-|.++.  .-||.-.+.+. .-.|.++|||++|||+++--+
T Consensus       252 en~d~R--erG~iTvRn~GvgeG--rvYIyRedR~s-s~sHnvVGrV~eGiELid~a~  304 (512)
T COG4070         252 ENFDLR--ERGAITVRNVGVGEG--RVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE  304 (512)
T ss_pred             hhhhhh--hcceEEEEeeecccc--eEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence            766544  479999999997754  78998877654 456899999999999987554

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=98.39  E-value=2e-05  Score=80.62  Aligned_cols=222  Identities=21%  Similarity=0.306  Sum_probs=126.8

Q ss_pred             EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443          129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  208 (403)
Q Consensus       129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls  208 (403)
                      +.+||.++ ||.++++|+.+.  +.|. +   .+-+...-|+            +.....+...+.|+  .....+|+|.
T Consensus       203 ~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~tsTfi------------~d~~L~g~~~p~En--~~~R~rGtVT  261 (503)
T TIGR03268       203 VEVELDPN-APVSVEHFLALM--EDGT-F---RVDYRTSTFI------------SDDSLRGLDKPEEN--IEKRRRGAVT  261 (503)
T ss_pred             EEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeeeecceE------------ecccccCccCCccc--cCcccceeEE
Confidence            67787666 999999999999  5554 1   1111112222            22222344445553  4455699999


Q ss_pred             ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CC----------------------------
Q psy443          209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QS----------------------------  258 (403)
Q Consensus       209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~----------------------------  258 (403)
                      +.+.|.+.  -..||-..+-+ ..-.|+|+|+|+.||++++-......  ..                            
T Consensus       262 VRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~Gd~itv~t~Peri~llG~t~~eA~~~~~~~gIe~~  338 (503)
T TIGR03268       262 VRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEGDRLSVETEPPRIDLVGLTQEEAEELLEELGIELE  338 (503)
T ss_pred             EEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccCCCEEEEEeCchHheecCCCHHHHHHHHHhcCcEEe
Confidence            99887532  23666554433 33579999999999999875543310  00                            


Q ss_pred             -------------Ccc---------------------cceeeeccccCCcchhhHHHhhcCCCCCccCC-ceEEeecCCe
Q psy443          259 -------------GKT---------------------SKKIVLRSDVVPKTAENFRALCTGEKGFGFKD-STFHRVIPNF  303 (403)
Q Consensus       259 -------------~~p---------------------~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g-~~f~Rvi~~f  303 (403)
                                   +.|                     +..|+||.+.||.++.-|+++. |=... =-| ..+|=..++.
T Consensus       339 ~dG~~~dDaVVV~Q~P~~TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t-GL~~~-~VG~L~v~F~~~d~  416 (503)
T TIGR03268       339 KEGVDGDDAVVVKQEPPYTLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT-GLKTK-PVGRLPVHFAFKEM  416 (503)
T ss_pred             ecCCCCCCeEEEecCCchHHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc-CCccc-ccceeEEEEEeCCe
Confidence                         011                     1156999999999999999987 11100 011 2344444553


Q ss_pred             EEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEe------cCC-CCCCCCceEEEEEE
Q psy443          304 MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITT------VKT-AWLDNRHVVFGSVV  376 (403)
Q Consensus       304 ~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl------~~~-~~Ld~~~~vfG~Vi  376 (403)
                      .+-=|+..          ++..+.+|+..-..-..|.|+|-|....-.| -.=|-+      +|+ ..+++.+.+ |+|+
T Consensus       417 ~mFk~~~~----------~~k~LiPEN~P~~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTNIi-G~Vv  484 (503)
T TIGR03268       417 IMFKGNKE----------LAKGLIPENTPEDKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTNII-GRVV  484 (503)
T ss_pred             eEeccCch----------hccccCCCCCCCCccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcceE-EEec
Confidence            33222222          2233445555444455677777665422111 112222      333 234565554 9999


Q ss_pred             ecHHHHHHHHhC
Q psy443          377 EGLDVVKKLESM  388 (403)
Q Consensus       377 eG~dvl~~i~~~  388 (403)
                      +++|.|+++..-
T Consensus       485 ~~~e~Lk~~KeG  496 (503)
T TIGR03268       485 EGMERLKGLKEG  496 (503)
T ss_pred             CChhHhcccccC
Confidence            999999988764

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=98.36  E-value=1.4e-05  Score=81.84  Aligned_cols=222  Identities=21%  Similarity=0.285  Sum_probs=127.6

Q ss_pred             EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443          129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  208 (403)
Q Consensus       129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls  208 (403)
                      +.+||.++ ||.++++|+.+.  +.|. +   .+-+....|+.            ..+..+...+.|+  ....++|+|.
T Consensus       206 ~eve~~~~-~p~s~EH~la~~--~~G~-f---~Vd~~tstfI~------------d~~L~g~~~p~En--~~~R~~GtVT  264 (508)
T PRK00969        206 VEVELDPG-APKSVEHFLALL--EDGT-F---EVDFETSTFIA------------DDRLQGLKIPEEN--FEPRRRGTVT  264 (508)
T ss_pred             EEEEEcCC-CCchHHHHHHHH--hCCe-E---EEeeeecceEe------------eccccCccCCccc--cCccccceEE
Confidence            67788766 999999999999  5554 1   11111112222            2222344445553  4455699999


Q ss_pred             ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CCCc--------------------------
Q psy443          209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGK--------------------------  260 (403)
Q Consensus       209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~~~--------------------------  260 (403)
                      +.+.|.+.  -..||-..+-+ -.-.|+|+|+|+.||++++-......  ....                          
T Consensus       265 VRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~Gd~itv~t~Peri~llG~t~~eA~~~~~~~gIel~  341 (508)
T PRK00969        265 VRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKEGDRITVKTVPERIDLLGLTLKEAEELLEKLGIELE  341 (508)
T ss_pred             EEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccCCCEEEEEeCchHheecCCCHHHHHHHHHhCCcEEE
Confidence            99887532  23667654433 33579999999999999876544311  0000                          


Q ss_pred             ---------------c---------------------cceeeeccccCCcchhhHHHhhcCCCCCccCC-ceEEeecCCe
Q psy443          261 ---------------T---------------------SKKIVLRSDVVPKTAENFRALCTGEKGFGFKD-STFHRVIPNF  303 (403)
Q Consensus       261 ---------------p---------------------~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g-~~f~Rvi~~f  303 (403)
                                     |                     +..|+||.+.||.++.-|+++. | --..=-| ..+|=..++.
T Consensus       342 ~eg~~~ddaVVV~Q~P~~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t-G-L~~~~VG~L~v~F~~~d~  419 (508)
T PRK00969        342 KEGYDGDDAVVVEQTPETTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT-G-LKTKPVGKLPVYFKYEDT  419 (508)
T ss_pred             ecCCCCCCcEEEecCCchHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc-C-CcccccceeEEEEEeCCe
Confidence                           0                     1156999999999999999987 1 1000011 2344444554


Q ss_pred             EEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEe------cCC-CCCCCCceEEEEEE
Q psy443          304 MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITT------VKT-AWLDNRHVVFGSVV  376 (403)
Q Consensus       304 ~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl------~~~-~~Ld~~~~vfG~Vi  376 (403)
                      .+--|+..          ++..+.+||..-.....|.|+|-|....-.| -.=|-+      +|+ ..+++.+ ++|||+
T Consensus       420 ~lFk~~~~----------~~k~liPEN~P~~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTN-IIGrVv  487 (508)
T PRK00969        420 YLFKGNIE----------YAKGLLPENTPEDKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTN-IIGRVV  487 (508)
T ss_pred             EEEccChh----------hccccCCCCCCCCccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCce-eEEEec
Confidence            33323322          2333445665545555677777665422111 111222      333 2345555 459999


Q ss_pred             ecHHHHHHHHhCC
Q psy443          377 EGLDVVKKLESMG  389 (403)
Q Consensus       377 eG~dvl~~i~~~~  389 (403)
                       ++|-|+++..-.
T Consensus       488 -~~e~Lk~lKeGd  499 (508)
T PRK00969        488 -NLEKLKKLKEGD  499 (508)
T ss_pred             -ChHHhcccccCC
Confidence             999999987643

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00015  Score=71.97  Aligned_cols=101  Identities=29%  Similarity=0.464  Sum_probs=61.5

Q ss_pred             EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443          129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  208 (403)
Q Consensus       129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls  208 (403)
                      +.+||-++ +|+++++|+.|.  +.|- +    =-....|-.+           +..+....+.+.++..+  ..+|+++
T Consensus       205 ~eve~s~n-sP~saEH~lalm--edG~-l----ri~~~tntfi-----------s~~~lq~~~~~~en~d~--RerG~iT  263 (512)
T COG4070         205 FEVELSRN-SPKSAEHFLALM--EDGT-L----RIDVTTNTFI-----------SDDTLQEEKVPEENFDL--RERGAIT  263 (512)
T ss_pred             EEEEeCCC-CchhHHHHHHHh--hcce-E----EEEEecccee-----------eccccccccCChhhhhh--hhcceEE
Confidence            77888776 999999999999  5553 1    1111111111           11222234455554443  4589999


Q ss_pred             ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccc
Q psy443          209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES  253 (403)
Q Consensus       209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~  253 (403)
                      ..+.+-++  -.-||-..+-+ -.-.|.|.|||++||++++-...
T Consensus       264 vRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         264 VRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             EEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence            98876432  23566554422 22378999999999999876543

>KOG4279|consensus

Probab=95.09  E-value=0.013  Score=62.89  Aligned_cols=54  Identities=44%  Similarity=0.778  Sum_probs=48.9

Q ss_pred             hhhcCCcchhHHHHHHHHHHHhhhccCCcchhccccccccccccccccccccee
Q psy443           66 VIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLA  119 (403)
Q Consensus        66 ~~~~~~~~~e~~l~ia~~~~~~~~~~~p~~~c~~~~v~~~~f~~~~~~~~~s~~  119 (403)
                      =-++++++|+.++..+-+.++...+.+|||||+++|+|||.|.++...+.+|..
T Consensus       251 NRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~  304 (1226)
T KOG4279|consen  251 NRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLN  304 (1226)
T ss_pred             cccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHH
Confidence            356789999999999999999999999999999999999999999998886633

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.29  E-value=0.029  Score=56.82  Aligned_cols=53  Identities=49%  Similarity=0.733  Sum_probs=45.6

Q ss_pred             hhhhhh-cCCcchhHHHHHHHHHHHhhhccCCcchhcccccccccccccccccc
Q psy443           63 EVMVIR-NKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDK  115 (403)
Q Consensus        63 ~~~~~~-~~~~~~e~~l~ia~~~~~~~~~~~p~~~c~~~~v~~~~f~~~~~~~~  115 (403)
                      |.-|.+ +++++++.+++++.+++...+..+|||+|+++++||+.|.+....+.
T Consensus       186 afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~  239 (374)
T PF13281_consen  186 AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDR  239 (374)
T ss_pred             HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccch
Confidence            444444 66889999999999999999999999999999999999998766555

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=88.11  E-value=0.63  Score=40.96  Aligned_cols=106  Identities=23%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             eEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCe--EEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccc
Q psy443          128 GFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNF--MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPG  205 (403)
Q Consensus       128 ~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~--~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G  205 (403)
                      .++.+|..|.||+||+.|.++-     = |.+..+|-...+.  ++.-+++..           .....|+...... +|
T Consensus         9 ~~~A~l~~d~AP~Tcaa~~~~L-----P-~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~~P~-pG   70 (147)
T PF12903_consen    9 SFTARLLDDKAPKTCAAFWEAL-----P-LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTVTPI-PG   70 (147)
T ss_dssp             EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEESS---TT
T ss_pred             EEEEEEcccCChHHHHHHHHhC-----C-CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcccCC-CC
Confidence            4788999999999999999987     1 6677777555443  333344321           1123444444343 78


Q ss_pred             eeeec---ccCCC--CC-cceeEEEeccCcCC---CCc---eeEEEeEeecccccccc
Q psy443          206 ILSMA---NAGPN--TN-GSQFFITTVKTAWL---DNR---HVVFGSVVEGLDVVKKL  251 (403)
Q Consensus       206 ~ls~a---~~~~~--~~-~SqFfI~l~~~~~L---d~~---~~VFGrVieG~dvl~~i  251 (403)
                      -|.+.   ....+  .. =++.-|.++....+   |..   -.+|++|++|.+-+.++
T Consensus        71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~  128 (147)
T PF12903_consen   71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEA  128 (147)
T ss_dssp             EEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHH
T ss_pred             cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHH
Confidence            77776   11111  11 13333444333221   122   27999999998865554

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		3e-64
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		3e-64
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		3e-64
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		4e-64
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		3e-64
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		4e-64
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		4e-64
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		5e-64
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		4e-59
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-59
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-58
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		9e-58
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		6e-58
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-57
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		8e-58
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-57
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		8e-58
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-57
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		8e-58
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-57
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		8e-58
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-57
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		9e-58
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-57
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-57
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-57
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-57
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-57
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-57
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-57
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-57
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		4e-57
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-57
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		5e-57
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		2e-57
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		5e-57
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		3e-57
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		5e-57
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		3e-57
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		3e-57
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		4e-56
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		8e-56
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		2e-55
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		5e-55
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		9e-55
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-54
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-54
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-54
1dyw_A	173	Biochemical And Structural Characterization Of A Di		3e-54
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-54
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-54
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		4e-54
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		8e-54
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-53
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-53
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-50
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		4e-50
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		7e-50
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-49
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-49
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-47
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-47
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-47
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		6e-47
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-47
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		6e-47
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-47
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-47
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		3e-47
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		6e-47
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-46
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		2e-46
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		4e-45
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-44
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-44
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-44
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-44
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-44
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		8e-44
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-43
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-43
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		2e-42
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		1e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		7e-41
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-40
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-37
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		9e-37
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		4e-36
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		6e-36
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		7e-36
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-35
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		8e-36
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-35
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-35
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-35
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-27
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-27
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-27
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-27
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		2e-26
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		2e-26
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		2e-26
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		2e-26
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		2e-26
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		2e-26
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-24
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-24
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		7e-24
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		7e-24
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-21
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		6e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		7e-20
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		7e-19
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		4e-18
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		8e-18
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		3e-17
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		1e-09
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		3e-09
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		4e-09
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		1e-08
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		4e-09
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		1e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		2e-08
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		1e-07
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		2e-07
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		1e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		1e-06
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		3e-04

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  242 bits (618), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 24  ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 83
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 84  FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 143
Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS+SG+TSKKIV+
Sbjct: 144 ESFGSKSGRTSKKIVI 159

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 130/144 (90%), Gaps = 2/144 (1%)
Query: 259 GKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
           GK   ++VL  ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGT
Sbjct: 15  GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGT 74
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           GGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+
Sbjct: 75  GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVI 134
Query: 377 EGLDVVKKLESMGSQSGKTSKKIV 400
           EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 135 EGMDVVKKIESFGSKSGRTSKKIV 158

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 23  ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 83  FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS+SG+TSKKIV+
Sbjct: 143 ESFGSKSGRTSKKIVI 158

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 130/144 (90%), Gaps = 2/144 (1%)
Query: 259 GKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
           GK   ++VL  ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGT
Sbjct: 14  GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGT 73
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           GGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+
Sbjct: 74  GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVI 133
Query: 377 EGLDVVKKLESMGSQSGKTSKKIV 400
           EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 134 EGMDVVKKIESFGSKSGRTSKKIV 157

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 22  ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 82  FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 141
Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS+SG+TSKKIV+
Sbjct: 142 ESFGSKSGRTSKKIVI 157

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Query: 258 SGKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 315
           +GK   ++VL  ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNG
Sbjct: 12  NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNG 71
Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           TGGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V
Sbjct: 72  TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 131
Query: 376 VEGLDVVKKLESMGSQSGKTSKKIV 400
           +EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 132 IEGMDVVKKIESFGSKSGRTSKKIV 156

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 23  ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 83  FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS+SG+TSKKIV+
Sbjct: 143 ESFGSKSGRTSKKIVI 158

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Query: 258 SGKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 315
           +GK   ++VL  ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNG
Sbjct: 13  NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNG 72
Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           TGGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V
Sbjct: 73  TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 132
Query: 376 VEGLDVVKKLESMGSQSGKTSKKIV 400
           +EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 133 IEGMDVVKKIESFGSKSGRTSKKIV 157

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  225 bits (573), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 120/137 (87%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           +++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 29  QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 88
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++
Sbjct: 89  KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 148
Query: 384 KLESMGSQSGKTSKKIV 400
           ++E+ GS+ GK  +K++
Sbjct: 149 QIEAQGSKDGKPKQKVI 165

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  224 bits (572), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 120/137 (87%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           +++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 21  QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 80
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++
Sbjct: 81  KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 140
Query: 384 KLESMGSQSGKTSKKIV 400
           ++E+ GS+ GK  +K++
Sbjct: 141 QIEAQGSKDGKPKQKVI 157

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  221 bits (564), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 22  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG+V EG+++V+ +
Sbjct: 82  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  220 bits (561), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 23  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG+V EG+++V+ +E
Sbjct: 83  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAME 142
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  221 bits (563), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 42  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 101
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 102 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 161
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 162 ERFGSRNGKTSKKITI 177

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162
Query: 387 SMGSQSGKTSKKIV 400
             GS++GKTSKKI 
Sbjct: 163 RFGSRNGKTSKKIT 176

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  221 bits (562), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  221 bits (562), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  221 bits (562), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 22  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 82  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 23  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 83  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 142
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  221 bits (562), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  220 bits (561), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 31  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 90
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 91  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 150
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 151 ERFGSRNGKTSKKITI 166

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 32  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 91
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 92  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 151
Query: 387 SMGSQSGKTSKKIV 400
             GS++GKTSKKI 
Sbjct: 152 RFGSRNGKTSKKIT 165

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGIL+MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGIL+MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 114/133 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 114/133 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 27  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 86
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +
Sbjct: 87  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 146
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 147 ERFGSRNGKTSKKITI 162

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  218 bits (555), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 114/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 28  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 87
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD  HVVFG V EG+++V+ +E
Sbjct: 88  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME 147
Query: 387 SMGSQSGKTSKKIV 400
             GS++GKTSKKI 
Sbjct: 148 RFGSRNGKTSKKIT 161

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FH++IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  218 bits (555), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FH++IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT+HNGTGGKSIYG K
Sbjct: 22  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 82  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
           +  GS++GKTSKKI +
Sbjct: 142 KRFGSRNGKTSKKITI 157

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  218 bits (555), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT+HNGTGGKSIYG KF
Sbjct: 23  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ ++
Sbjct: 83  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMK 142
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+HNGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  218 bits (555), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+HNGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 116/135 (85%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP F CQGGDFTNHNGTGGKSIYG KF
Sbjct: 33  LRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKF 92
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DENF LKHTGPG+LS AN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++++E
Sbjct: 93  DDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 152
Query: 253 SMGSQSGKTSKKIVL 267
           + GS+ GK  +K+++
Sbjct: 153 AQGSKDGKPKQKVII 167

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 116/135 (85%)
Query: 266 VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 325
           +LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP F CQGGDFTNHNGTGGKSIYG K
Sbjct: 32  LLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKK 91
Query: 326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
           F+DENF LKHTGPG+LS AN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++++
Sbjct: 92  FDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 151
Query: 386 ESMGSQSGKTSKKIV 400
           E+ GS+ GK  +K++
Sbjct: 152 EAQGSKDGKPKQKVI 166

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  215 bits (547), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+ NGTGGKSIYG K
Sbjct: 23  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83  FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  214 bits (544), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+ NGTGGKSIYG KF
Sbjct: 24  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84  EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
             GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 112/136 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L +D VPKTAENFRAL TGEKGFG+K S FHR+IP F CQGGDFT HNGTGGKSIYG K
Sbjct: 22  ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF LKHTGPGILS ANAGPNTNGSQFFI T KT WLD +HVVFG V EG ++V+  
Sbjct: 82  FEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAX 141
Query: 252 ESMGSQSGKTSKKIVL 267
           E  GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  211 bits (538), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 111/134 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP F CQGGDFT HNGTGGKSIYG KF
Sbjct: 23  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILS ANAGPNTNGSQFFI T KT WLD +HVVFG V EG ++V+  E
Sbjct: 83  EDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXE 142
Query: 387 SMGSQSGKTSKKIV 400
             GS++GKTSKKI 
Sbjct: 143 RFGSRNGKTSKKIT 156

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  210 bits (535), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 112/136 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L +D+VPKTAENFRALCTGEKGFG+  S FHRVIP+FM QGGDFT  NGTGGKSIYG K
Sbjct: 21  KLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGK 80
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF   H  PG+LSMANAGPNTNGSQFFITTV   WLD +HVVFG VV+G D+VKK+
Sbjct: 81  FPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKV 140
Query: 252 ESMGSQSGKTSKKIVL 267
           ES+GS SG T  +IV+
Sbjct: 141 ESLGSPSGATKARIVV 156

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Query: 251 LESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDF 310
           +E+ G   G+   K  L +D+VPKTAENFRALCTGEKGFG+  S FHRVIP+FM QGGDF
Sbjct: 8   VEADGQPIGRVVFK--LYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDF 65
Query: 311 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
           T  NGTGGKSIYG KF DENF   H  PG+LSMANAGPNTNGSQFFITTV   WLD +HV
Sbjct: 66  TAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHV 125
Query: 371 VFGSVVEGLDVVKKLESMGSQSGKTSKKIVC 401
           VFG VV+G D+VKK+ES+GS SG T  +IV 
Sbjct: 126 VFGEVVDGYDIVKKVESLGSPSGATKARIVV 156

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 111/134 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG K
Sbjct: 22  KLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+
Sbjct: 82  FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 141
Query: 252 ESMGSQSGKTSKKI 265
           E  GS SGKT+  I
Sbjct: 142 EGKGSASGKTNATI 155

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 110/133 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23  LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83  ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
Query: 387 SMGSQSGKTSKKI 399
             GS SGKT+  I
Sbjct: 143 GKGSASGKTNATI 155

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/148 (72%), Positives = 115/148 (77%), Gaps = 9/148 (6%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGD 309
           GK S +IV  L  DVVPKTA NFRALCTGE G G       FK S FHR+IPNFM QGGD
Sbjct: 14  GKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGD 73
Query: 310 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRH 369
           FT  NGTGG+SIYG KF DENF  KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +H
Sbjct: 74  FTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKH 133
Query: 370 VVFGSVVEGLDVVKKLESMGSQSGKTSK 397
           VVFG VVEGLDVVK +ES GSQSGK  K
Sbjct: 134 VVFGRVVEGLDVVKAVESNGSQSGKPVK 161

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  208 bits (530), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 111/134 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG K
Sbjct: 23  KLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+
Sbjct: 83  FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 142
Query: 252 ESMGSQSGKTSKKI 265
           E  GS SGKT+  I
Sbjct: 143 EGKGSASGKTNATI 156

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  207 bits (528), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 110/133 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 24  LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 84  ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 143
Query: 387 SMGSQSGKTSKKI 399
             GS SGKT+  I
Sbjct: 144 GKGSASGKTNATI 156

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  208 bits (529), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 114/135 (84%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LRSD+VP+TAENFRALCTGE+GFG+ +  FHRVIP FMCQGGDF   +GTGGKSIYG KF
Sbjct: 31  LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DENF L+H G G+LSMAN+GPNTNGSQFFI T K  WLD +HVVFG VV+G +VVKK+E
Sbjct: 91  DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 253 SMGSQSGKTSKKIVL 267
           S+GS+SGK  + +++
Sbjct: 151 SVGSKSGKVKEPVII 165

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  207 bits (527), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 113/134 (84%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSD+VP+TAENFRALCTGE+GFG+ +  FHRVIP FMCQGGDF   +GTGGKSIYG KF
Sbjct: 31  LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           +DENF L+H G G+LSMAN+GPNTNGSQFFI T K  WLD +HVVFG VV+G +VVKK+E
Sbjct: 91  DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 387 SMGSQSGKTSKKIV 400
           S+GS+SGK  + ++
Sbjct: 151 SVGSKSGKVKEPVI 164

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 112/136 (82%)
Query: 130 KGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 189
           K +L  DVVPKTA NFRALCTGEKGFG+  S FHRVIP+FM QGGDFT  NGTGGKSIYG
Sbjct: 19  KFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYG 78
Query: 190 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 249
            KF DENF LKH  PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK
Sbjct: 79  AKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVK 138
Query: 250 KLESMGSQSGKTSKKI 265
            +E+ GS SGK   +I
Sbjct: 139 AIEAEGSGSGKPRSRI 154

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 111/136 (81%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           K  L  DVVPKTA NFRALCTGEKGFG+  S FHRVIP+FM QGGDFT  NGTGGKSIYG
Sbjct: 19  KFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYG 78
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF DENF LKH  PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK
Sbjct: 79  AKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVK 138
Query: 384 KLESMGSQSGKTSKKI 399
            +E+ GS SGK   +I
Sbjct: 139 AIEAEGSGSGKPRSRI 154

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/153 (66%), Positives = 115/153 (75%), Gaps = 12/153 (7%)
Query: 260 KTSKKIV--LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDF 310
           K + +IV  L +D VPKTAENFRALCTGEKG G       +K S FHRVIPNFM QGGDF
Sbjct: 19  KAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDF 78
Query: 311 TNHNGTGGKSIYGNKFEDENFTLK---HTGPGILSMANAGPNTNGSQFFITTVKTAWLDN 367
           T  NGTGG+SIYG  F DE+F+ K   HTG G LSMANAGPNTNGSQFFI T  T WLD 
Sbjct: 79  TRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDG 138
Query: 368 RHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
           +HVVFG V++GLDVVKK+E +GS SGKT  +IV
Sbjct: 139 KHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIV 171

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 110/136 (80%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L S++VP+TAENFRALCTGEKGFGFK+S FHRVIP+F+CQGGD T H+GTGG+SIYG+K
Sbjct: 26  ELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDK 85
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           FEDENF +KHTGPG+LSMAN G NTN SQF IT  K   LD +HVVFG V +G+D VKK+
Sbjct: 86  FEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKI 145
Query: 252 ESMGSQSGKTSKKIVL 267
           ES GS  G   ++I +
Sbjct: 146 ESFGSPKGSVCRRITI 161

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  194 bits (493), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L S++VP+TAENFRALCTGEKGFGFK+S FHRVIP+F+CQGGD T H+GTGG+SIYG+KF
Sbjct: 27  LFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKF 86
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF +KHTGPG+LSMAN G NTN SQF IT  K   LD +HVVFG V +G+D VKK+E
Sbjct: 87  EDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIE 146
Query: 387 SMGSQSGKTSKKI 399
           S GS  G   ++I
Sbjct: 147 SFGSPKGSVCRRI 159

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 8/152 (5%)
Query: 112 YKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMC 171
           Y +++SL   +         +L  D+VPKTA+NFR LC   KG G+K STFHR+IP FM 
Sbjct: 35  YANEESLGRIVM--------KLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMV 86
Query: 172 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL 231
           QGGD+T HNGTGG+SIYG KF DENF LKHT  GILSMAN G +TNGSQFFIT  KT WL
Sbjct: 87  QGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWL 146
Query: 232 DNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK 263
           D +HVVFG VVEG+DVV K+   GS+SG+  K
Sbjct: 147 DEKHVVFGEVVEGMDVVHKIAKYGSESGQVKK 178

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 111/155 (71%), Gaps = 10/155 (6%)
Query: 245 LDVVKKLESMGSQSGKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPN 302
            DV    ES+G        +IV  L  D+VPKTA+NFR LC   KG G+K STFHR+IP 
Sbjct: 32  FDVYANEESLG--------RIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG 83
Query: 303 FMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKT 362
           FM QGGD+T HNGTGG+SIYG KF DENF LKHT  GILSMAN G +TNGSQFFIT  KT
Sbjct: 84  FMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKT 143
Query: 363 AWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK 397
            WLD +HVVFG VVEG+DVV K+   GS+SG+  K
Sbjct: 144 QWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKK 178

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 108/148 (72%), Gaps = 7/148 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
            L +D VP TAENFRALCTGEKG G       +  S FHR+IP FM QGGDFT  +GTGG
Sbjct: 39  ELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGG 98
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG+KF DENF   H  P +LSMANAGPNTNGSQFFITTV   WLD +HVVFG V+EG
Sbjct: 99  ESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEG 158
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVV 272
           ++VVK +E  GSQ+GK +K + + +  V
Sbjct: 159 MEVVKSIEKCGSQNGKPTKSVCITASGV 186

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  185 bits (470), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 105/140 (75%), Gaps = 7/140 (5%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
           L +D VP TAENFRALCTGEKG G       +  S FHR+IP FM QGGDFT  +GTGG+
Sbjct: 40  LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99
Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
           SIYG+KF DENF   H  P +LSMANAGPNTNGSQFFITTV   WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 380 DVVKKLESMGSQSGKTSKKI 399
           +VVK +E  GSQ+GK +K +
Sbjct: 160 EVVKSIEKCGSQNGKPTKSV 179

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 108/138 (78%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 36  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 253 SMGSQSGKTSKKIVLRSD 270
           S  + S     K V+ +D
Sbjct: 156 STKTDSRDKPLKDVIIAD 173

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 103/126 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 36  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 387 SMGSQS 392
           S  + S
Sbjct: 156 STKTDS 161

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 108/138 (78%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 26  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 85
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 86  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 145
Query: 253 SMGSQSGKTSKKIVLRSD 270
           S  + S     K V+ +D
Sbjct: 146 STKTDSRDKPLKDVIIAD 163

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 103/126 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 26  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 85
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 86  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 145
Query: 387 SMGSQS 392
           S  + S
Sbjct: 146 STKTDS 151

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 102/123 (82%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L    VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT  +GTGGKSIYG 
Sbjct: 31  IGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGE 90
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
           +F DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K
Sbjct: 91  RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRK 150
Query: 385 LES 387
           +E+
Sbjct: 151 VET 153

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 102/123 (82%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L    VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT  +GTGGKSIYG 
Sbjct: 31  IGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGE 90
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
           +F DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K
Sbjct: 91  RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRK 150
Query: 385 LES 387
           +E+
Sbjct: 151 VET 153

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 6/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           IYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 247 VVKKLESMGSQSGKTSKKIVL 267
           VV+++E  G++SG   + +V+
Sbjct: 144 VVREMEKEGAKSGYVKRSVVI 164

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
           IYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 381 VVKKLESMGSQSGKTSKKIV 400
           VV+++E  G++SG   + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 105/141 (74%), Gaps = 6/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           IYG  F DENF +KH  PG+LSMANAGPNTN SQF IT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 247 VVKKLESMGSQSGKTSKKIVL 267
           VV+++E  G++SG   + +V+
Sbjct: 144 VVREMEKEGAKSGYVKRSVVI 164

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 104/140 (74%), Gaps = 6/140 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
           IYG  F DENF +KH  PG+LSMANAGPNTN SQF IT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 381 VVKKLESMGSQSGKTSKKIV 400
           VV+++E  G++SG   + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 105/139 (75%), Gaps = 8/139 (5%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
           VPKTA+NFR LC    G G+++STFHR+IPNFM QGGDFT  NGTGG+SIYG+KF DENF
Sbjct: 33  VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMG 255
           + KH   GILSMANAGPNTNGSQFFITT  T+WLD +HVVFG V +     VVK++E++G
Sbjct: 93  SRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 152
Query: 256 SQSGKTSKKIVLRSDVVPK 274
           S SG       +RS+  PK
Sbjct: 153 SSSGS------VRSNTRPK 165

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 103/135 (76%), Gaps = 6/135 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 331
           VPKTA+NFR LC    G G+++STFHR+IPNFM QGGDFT  NGTGG+SIYG+KF DENF
Sbjct: 33  VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMG 389
           + KH   GILSMANAGPNTNGSQFFITT  T+WLD +HVVFG V +     VVK++E++G
Sbjct: 93  SRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 152
Query: 390 SQSGK----TSKKIV 400
           S SG     T  KIV
Sbjct: 153 SSSGSVRSNTRPKIV 167

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 104/144 (72%), Gaps = 8/144 (5%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTG 183
            L +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGGDF+N NGTG
Sbjct: 35  ELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
           G+SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +HVVFG V++
Sbjct: 95  GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIK 154
Query: 244 GLDVVKKLESMGSQSGKTSKKIVL 267
           G+ V K LE++  +  K +K  V+
Sbjct: 155 GMGVAKILENVEVKGEKPAKLCVI 178

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 10/152 (6%)
Query: 259 GKTSKKIVLR--SDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
           G+   +IVL   +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGG
Sbjct: 26  GERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGG 85
Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
           DF+N NGTGG+SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +
Sbjct: 86  DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 145
Query: 369 HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
           HVVFG V++G+ V K LE++  +  K +K  V
Sbjct: 146 HVVFGQVIKGMGVAKILENVEVKGEKPAKLCV 177

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
           P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN  
Sbjct: 38  PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 258
           +KH   G LSMANAGPNTNGSQFFITT  T WLD RHVVFG V++G+DVV ++E   + S
Sbjct: 98  VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNS 156

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
           P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN  
Sbjct: 38  PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 392
           +KH   G LSMANAGPNTNGSQFFITT  T WLD RHVVFG V++G+DVV ++E   + S
Sbjct: 98  VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNS 156

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  174 bits (441), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L  + VPKT ENF+ L +GE GFG+K S FHRVI NFM QGGDFTN +GTGGKSIYG 
Sbjct: 24  IGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGT 83
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
           +F+DEN  +KH   G +SMANAGPN+NGSQFF+TT  T WLD RHVVFG VVEG+DVVKK
Sbjct: 84  RFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKK 142
Query: 385 LESMGSQSGKTSKKIVCFN 403
           +E+  +      KK V  N
Sbjct: 143 VENTKTGLNDKPKKAVKIN 161

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
           P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN  
Sbjct: 38  PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 258
           +KH   G LSMANAGPNTNGSQFFITT  T WLD  HVVFG V++G+DVV ++E   + S
Sbjct: 98  VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNS 156

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
           P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN  
Sbjct: 38  PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 392
           +KH   G LSMANAGPNTNGSQFFITT  T WLD  HVVFG V++G+DVV ++E   + S
Sbjct: 98  VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNS 156

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 100/146 (68%), Gaps = 2/146 (1%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
           GK   +IV  L    VPKTA NF  L    KG G+  S FHRVI +FM QGGDFT  +GT
Sbjct: 17  GKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGT 76
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           GG+SIYG KF DENF LKH G G LSMANAG +TNGSQFFITTVKT WLD RHVVFG ++
Sbjct: 77  GGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKIL 136
Query: 377 EGLDVVKKLESMGSQSGKTSKKIVCF 402
           EG+DVV+K+E      G   K+ V  
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVII 162

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 93/122 (76%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L  +VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGDFT  +GTGG SIYG 
Sbjct: 26  IGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGE 85
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
            F DENF LKH G G +SMANAGP+TNGSQFFIT  K  WLD +HVVFG V++G+ VV  
Sbjct: 86  TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHS 145
Query: 385 LE 386
           +E
Sbjct: 146 IE 147

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 91/122 (74%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L   VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGD T  +GTGG SIYG 
Sbjct: 34  IGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGE 93
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
            F DENF LKH G G +SMANAGP+TNGSQFFIT  K  WLD +HVVFG V++G+ VV  
Sbjct: 94  TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHS 153
Query: 385 LE 386
           +E
Sbjct: 154 IE 155

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 97/130 (74%), Gaps = 5/130 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           KI L +DVVPKTAENFR  CTGE        G+K STFHRVI +FM QGGDF N +GTG 
Sbjct: 28  KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 87
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
            SIY   F DENF L+H+ PG+LSMAN+GP+TNG QFFIT  K  WLD +HVVFG +++G
Sbjct: 88  ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 379 LDVVKKLESM 388
           L V++K+E++
Sbjct: 148 LLVMRKIENV 157

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 97/133 (72%), Gaps = 7/133 (5%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEK-----GFGFKDSTFHRVIPNFMCQGGDFTNHNGTG 183
           FK  L  ++VPKT+ENFR  CTGE        G+K++ FHRVI  FM QGGDF NHNG+G
Sbjct: 76  FKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG 135
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV- 242
             SIYG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG ++ 
Sbjct: 136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIID 195
Query: 243 -EGLDVVKKLESM 254
            + L ++KK+E++
Sbjct: 196 NDSLLLLKKIENV 208

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 7/132 (5%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEK-----GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           K  L  ++VPKT+ENFR  CTGE        G+K++ FHRVI  FM QGGDF NHNG+G 
Sbjct: 77  KFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS 136
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-- 376
            SIYG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG ++  
Sbjct: 137 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN 196
Query: 377 EGLDVVKKLESM 388
           + L ++KK+E++
Sbjct: 197 DSLLLLKKIENV 208

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 10/144 (6%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
           G  + +IV  L +D+ P+T  NF  LCTG  G G        +K STFHRVI NFM QGG
Sbjct: 17  GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGG 76
Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
           DFT  +GTGG+SIYG  F+DE F +KH  P ++SMAN GPNTNGSQFFITT     L+N 
Sbjct: 77  DFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNI 136
Query: 369 HVVFGSVVEGLDVVKKLESMGSQS 392
           HVVFG VV G +VV K+E + + S
Sbjct: 137 HVVFGKVVSGQEVVTKIEYLKTNS 160

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 47  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 106
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 107 ESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 166
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
            +VV+++E+              ++D   K     R L  GE
Sbjct: 167 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 195

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  148 bits (373), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 89/128 (69%), Gaps = 8/128 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 47  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 106
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 107 ESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 166
Query: 379 LDVVKKLE 386
            +VV+++E
Sbjct: 167 QEVVREIE 174

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
            +VV+++E+              ++D   K     R L  GE
Sbjct: 150 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 178

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 379 LDVVKKLES 387
            +VV+++E+
Sbjct: 150 QEVVREIEN 158

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
            +VV+++E+              ++D   K     R L  GE
Sbjct: 150 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 178

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 379 LDVVKKLES 387
            +VV+++E+
Sbjct: 150 QEVVREIEN 158

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTG 183
           +L SD+ PKT +NF  LC+GEKG G        +K STFHRV+ NFM QGGDF+  NG G
Sbjct: 39  QLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKG 98
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
           G+SIYG  F+DENF LKH    +LSMAN G +TNGSQFFITT     LD  HVVFG V+ 
Sbjct: 99  GESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVIS 158
Query: 244 GLDVVKKLESM 254
           G +V++++E++
Sbjct: 159 GFEVIEQIENL 169

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 91/130 (70%), Gaps = 8/130 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SD+ PKT +NF  LC+GEKG G        +K STFHRV+ NFM QGGDF+  NG GG
Sbjct: 40  LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  F+DENF LKH    +LSMAN G +TNGSQFFITT     LD  HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159
Query: 379 LDVVKKLESM 388
            +V++++E++
Sbjct: 160 FEVIEQIENL 169

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 197
           PKT ENF   C   +   +   TFHR+I  FM Q GD T   G GG+SI+G +FEDE + 
Sbjct: 43  PKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHS 98
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
           TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++
Sbjct: 99  TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 331
           PKT ENF   C   +   +   TFHR+I  FM Q GD T   G GG+SI+G +FEDE + 
Sbjct: 43  PKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHS 98
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 388
           TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++
Sbjct: 99  TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 22/153 (14%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
           ++WY             PKT  NF  LC  E GF + ++ FHRVIPNF+ QGGD T   G
Sbjct: 54  LYWYHS-----------PKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TG 98
Query: 182 TGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
            GGKSIYG  FEDE N  LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  
Sbjct: 99  KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 158
Query: 241 VVEGLDVVKKLESMGSQSGKTSKKI----VLRS 269
           V + +  ++ + S+  Q+  T+K I    +LR+
Sbjct: 159 VSKNMTCIENIASV--QTTATNKPIFDLKILRT 189

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 7/128 (5%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 331
           PKT  NF  LC  E GF + ++ FHRVIPNF+ QGGD T   G GGKSIYG  FEDE N 
Sbjct: 60  PKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINK 115
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 391
            LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  V + +  ++ + S+  Q
Sbjct: 116 ELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASV--Q 173
Query: 392 SGKTSKKI 399
           +  T+K I
Sbjct: 174 TTATNKPI 181

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
            PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +FEDE +
Sbjct: 32  APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
             LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V ++
Sbjct: 88  PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 140 KTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT- 198
           KT +NF        G+ + +  FHRVI +FM Q GD  + +GTGG+SI+GN+FEDE F  
Sbjct: 28  KTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDH 83
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
           L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V +G  +V  +E +
Sbjct: 84  LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 274 KTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT- 332
           KT +NF        G+ + +  FHRVI +FM Q GD  + +GTGG+SI+GN+FEDE F  
Sbjct: 28  KTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDH 83
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 388
           L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V +G  +V  +E +
Sbjct: 84  LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           KI +  +  PKT ENF ALC       +    FHR I  FM Q GD T   G GG SI+G
Sbjct: 13  KIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 68
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            KFEDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++GL+ +
Sbjct: 69  KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128
Query: 383 KKLESM 388
            +LE +
Sbjct: 129 DELEKL 134

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           KI +  +  PKT ENF ALC       +    FHR I  FM Q GD T   G GG SI+G
Sbjct: 19  KIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 74
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            KFEDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++GL+ +
Sbjct: 75  KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 134
Query: 383 KKLESM 388
            +LE +
Sbjct: 135 DELEKL 140

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D+ PKT ENF  LC   K   +  + FHR I NF+ QGGD     GTGG+S +G  F
Sbjct: 35  LHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGESYWGKPF 90
Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           +DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG VV G DV+  +
Sbjct: 91  KDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM 150
Query: 252 ESMGSQSGKTSKKIVLRSDV 271
           E++ S       K  +R D 
Sbjct: 151 ENVESDPKTDRPKEEIRIDA 170

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 80/125 (64%), Gaps = 5/125 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  D+ PKT ENF  LC   K   +  + FHR I NF+ QGGD     GTGG+S +G  F
Sbjct: 35  LHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGESYWGKPF 90
Query: 327 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
           +DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG VV G DV+  +
Sbjct: 91  KDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM 150
Query: 386 ESMGS 390
           E++ S
Sbjct: 151 ENVES 155

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
           PK  +NF AL     G+ +K++ FH+ I  F+ QGGD T   G GG+SIYG  F+DE + 
Sbjct: 38  PKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYP 93
Query: 199 -LKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 253
            LK+   GILSMA+ G    PNTNGSQFFIT      L+  +V+FG +++G + +  LE+
Sbjct: 94  ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLEN 153
Query: 254 MGS-QSGKTSKKIVLRSDVV 272
             S +S K   +I+++  V+
Sbjct: 154 CPSDKSHKPIDEIIIKDIVI 173

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
           PK  +NF AL     G+ +K++ FH+ I  F+ QGGD T   G GG+SIYG  F+DE + 
Sbjct: 38  PKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYP 93
Query: 333 -LKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 387
            LK+   GILSMA+ G    PNTNGSQFFIT      L+  +V+FG +++G + +  LE+
Sbjct: 94  ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLEN 153
Query: 388 MGS 390
             S
Sbjct: 154 CPS 156

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 15/139 (10%)
Query: 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 321
           S  I L +D+ P+  ++F  LC  +    F D+ FHR I NFM QGG       +  K +
Sbjct: 17  SLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKEV 73
Query: 322 Y-----------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRH 369
                       G  FEDE +  L H G G+LSMAN G ++N S+FFIT      L+N+H
Sbjct: 74  QQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKH 133
Query: 370 VVFGSVVEGLDVVKKLESM 388
            +FG VV GLDV+++ E +
Sbjct: 134 TIFGRVVGGLDVLRQWEKL 152

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
           I L S   PK   NF  LC       + ++ FHRV+P F+ QGGD T   G+GG+SIYG 
Sbjct: 38  IELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGA 93
Query: 325 KFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
            F+DE +  L+    G+++MANAG + NGSQFF T  +   L+N+H +FG V
Sbjct: 94  PFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 145

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDST------------FHRVIPNFMCQGGDFT 311
           KI L  +  PKT  NF  L  G K +  ++++            FHRVI  FM QGGD T
Sbjct: 36  KIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT 95
Query: 312 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
                G    + ++F  E   L+   P +L+MANAGP TNGSQFFIT  KT  L+ RH +
Sbjct: 96  GTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTI 152
Query: 372 FGSVVEG 378
           FG V++ 
Sbjct: 153 FGEVIDA 159

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L +D  P+TA NF       K   +  + FHRVI  FM QGG F    G   KS     
Sbjct: 14  KLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF--EPGMKQKSTRAPI 68
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVE 243
             + N  L +    I       P++  +QFFI     A+LD+         + VFG VVE
Sbjct: 69  KNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVE 128
Query: 244 GLDVVKKLESM--GSQSGKTSKKIVLRSDVVPKTAE 277
           G DVV +++S+  GS++G     +    DV+ + AE
Sbjct: 129 GTDVVDRIKSVATGSRAGHGDVPV---DDVIIEKAE 161

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 253 SMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTN 312
           S+  Q+   +  + L +D  P+TA NF       K   +  + FHRVI  FM QGG F  
Sbjct: 1   SIKLQTNHGTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF-- 55
Query: 313 HNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR---- 368
             G   KS       + N  L +    I       P++  +QFFI     A+LD+     
Sbjct: 56  EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTA 115
Query: 369 ----HVVFGSVVEGLDVVKKLESM--GSQSG 393
               + VFG VVEG DVV +++S+  GS++G
Sbjct: 116 HGWGYAVFGEVVEGTDVVDRIKSVATGSRAG 146

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
           P + +NF        GF + ++TFHRVIP FM QGG FT       K     K E +N  
Sbjct: 26  PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 199 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 251
           L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG VV+G+DV  K+ 
Sbjct: 81  LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 252 ----ESMGSQSGKTSKKIVLRSDVV 272
                 +G      SK +V+ S  V
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILSATV 164

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
           P + +NF        GF + ++TFHRVIP FM QGG FT       K     K E +N  
Sbjct: 26  PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 333 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 385
           L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG VV+G+DV  K+ 
Sbjct: 81  LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 386 ----ESMGSQSGKTSKKIVCFN 403
                 +G      SK +V  +
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILS 161

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
           P + +NF        GF + ++TFHRVIP FM QGG FT       K     K E +N  
Sbjct: 26  PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 199 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLE 252
           L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG VV+G+DV  K+ 
Sbjct: 81  LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 253 SMGS------QSGKTSKKIVLRSDVVP 273
            + +      Q+  +   ++L + V+P
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
           P + +NF        GF + ++TFHRVIP FM QGG FT       K     K E +N  
Sbjct: 26  PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 333 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 385
           L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG VV+G+DV  K+ 
Sbjct: 81  LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 386 ----ESMGSQSGKTSKKIVCFN 403
                 +G      SK +V  +
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILS 161

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 265 IVLRS--DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 322
           IV+++  D  P+T +NF   C   +GF + ++ FHRVI  FM QGG F    G   K+  
Sbjct: 11  IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATK 65
Query: 323 GNKFEDENFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
                + N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF 
Sbjct: 66  EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124
Query: 374 SVVEGLDVVKKLESMGS 390
            VV+G+DVV K++ + +
Sbjct: 125 EVVDGMDVVDKIKGVAT 141

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 265 IVLRS--DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 322
           IV+++  D  P+T +NF   C   +GF + ++ FHRVI  FM QGG F    G   K+  
Sbjct: 11  IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATK 65
Query: 323 GNKFEDENFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
                + N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF 
Sbjct: 66  EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124
Query: 374 SVVEGLDVVKKLESMGS 390
            VV+G+D V K++ + +
Sbjct: 125 EVVDGMDEVDKIKGVAT 141

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 259 GKTSKKIVLRSDV-----------VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQG 307
           G T  K+VL + +            P    NF  LC   +G+ + ++ FHRV+ +F+ QG
Sbjct: 18  GSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQG 74
Query: 308 GDFTNHNGTGGKSIY-GNKFEDENFT-LKHTGPGILSMANAGPN--------------TN 351
           GD T     G  + + G  F+ E    LK    G++ +AN G +              TN
Sbjct: 75  GDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTN 134
Query: 352 GSQFFITTVKTAWLDNRHVVFGSV 375
           G+QFFIT  +   L+N + +FG V
Sbjct: 135 GNQFFITLARADVLNNAYTLFGKV 158

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
           +H      K  L     PKT ENF  L   +KG  +  + FHRVI  FM QGG F    G
Sbjct: 8   LHTNHGVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPG 62
Query: 182 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR------- 234
              K        + N  LK+    I       P++  +QFFI      +L++        
Sbjct: 63  LKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 235 -HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTA 276
            + VFG VVEG D+V K++++ + S K   + V   DVV + A
Sbjct: 123 GYAVFGKVVEGQDIVDKIKAVKTGS-KGFHQDVPNDDVVIEKA 164

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           K+ L     PKT ENF  L   +KG  +  + FHRVI  FM QGG F    G   K    
Sbjct: 16  KLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPGLKQKPTDA 70
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSV 375
               + N  LK+    I       P++  +QFFI      +L++         + VFG V
Sbjct: 71  PIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKV 130
Query: 376 VEGLDVVKKLESMGSQS 392
           VEG D+V K++++ + S
Sbjct: 131 VEGQDIVDKIKAVKTGS 147

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 40/176 (22%)
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE------KGFG-------- 290
           +D+V   E +G        +I L  D  P   ENF  L  G+       G G        
Sbjct: 19  MDIVLNNEIIGRL------QIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI 72
Query: 291 ---FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFTLKHTGPGILS 342
              ++   FH V+ N     GD  N NG+   ++Y ++     F D  +   H   G+LS
Sbjct: 73  NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLS 130
Query: 343 MA----NAGPNTNGSQFFITT--VKTA----WLDNRHVVFGSVVEGLDVVKKLESM 388
           +      +G     S F IT   ++ +     LD   VV G V  GLDV+ K+ SM
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-106
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-106
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-106
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-106
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-106
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-106
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-106
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-106
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-105
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-105
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-104
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-104
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-104
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-104
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-104
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-104
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-104
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-104
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-104
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-104
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-102
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-102
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-101
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-101
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-101
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-101
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-99
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-99
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-99
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-99
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-99
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-99
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-97
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-97
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-94
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-87
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-87
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	4e-66
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-65
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	6e-66
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-65
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	3e-65
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	7e-65
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-65
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	4e-65
2b71_A	196	Cyclophilin-like protein; structural genomics, str	6e-63
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-62
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	5e-59
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	2e-58
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-58
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	9e-58
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-58
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	3e-57
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-57
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	4e-57
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	5e-56
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-55
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	6e-51
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-50
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	3e-48
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	1e-47
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-35
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	1e-34
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	6e-35
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-34
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	1e-33
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	5e-33
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	5e-31
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	7e-30

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  310 bits (796), Expect = e-106
 Identities = 101/134 (75%), Positives = 117/134 (87%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 32  LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 91

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++++E
Sbjct: 92  DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151

Query: 253 SMGSQSGKTSKKIV 266
           + GS+ GK  +K++
Sbjct: 152 AQGSKDGKPKQKVI 165

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  310 bits (796), Expect = e-106
 Identities = 101/134 (75%), Positives = 117/134 (87%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 32  LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 91

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           +DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++++E
Sbjct: 92  DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151

Query: 387 SMGSQSGKTSKKIV 400
           + GS+ GK  +K++
Sbjct: 152 AQGSKDGKPKQKVI 165

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  310 bits (796), Expect = e-106
 Identities = 94/134 (70%), Positives = 113/134 (84%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LRSD+VP+TAENFRALCTGE+GFG+ +  FHRVIP FMCQGGDF   +GTGGKSIYG KF
Sbjct: 31  LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DENF L+H G G+LSMAN+GPNTNGSQFFI T K  WLD +HVVFG VV+G +VVKK+E
Sbjct: 91  DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150

Query: 253 SMGSQSGKTSKKIV 266
           S+GS+SGK  + ++
Sbjct: 151 SVGSKSGKVKEPVI 164

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  310 bits (796), Expect = e-106
 Identities = 94/134 (70%), Positives = 113/134 (84%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           LRSD+VP+TAENFRALCTGE+GFG+ +  FHRVIP FMCQGGDF   +GTGGKSIYG KF
Sbjct: 31  LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           +DENF L+H G G+LSMAN+GPNTNGSQFFI T K  WLD +HVVFG VV+G +VVKK+E
Sbjct: 91  DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150

Query: 387 SMGSQSGKTSKKIV 400
           S+GS+SGK  + ++
Sbjct: 151 SVGSKSGKVKEPVI 164

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  309 bits (793), Expect = e-106
 Identities = 111/134 (82%), Positives = 125/134 (93%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 24  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 83

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+E
Sbjct: 84  PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143

Query: 253 SMGSQSGKTSKKIV 266
           S GS+SG+TSKKIV
Sbjct: 144 SFGSKSGRTSKKIV 157

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  309 bits (793), Expect = e-106
 Identities = 111/134 (82%), Positives = 125/134 (93%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 24  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 83

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+E
Sbjct: 84  PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143

Query: 387 SMGSQSGKTSKKIV 400
           S GS+SG+TSKKIV
Sbjct: 144 SFGSKSGRTSKKIV 157

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  308 bits (791), Expect = e-106
 Identities = 97/134 (72%), Positives = 110/134 (82%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23  LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83  ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142

Query: 253 SMGSQSGKTSKKIV 266
             GS SGKT+  I 
Sbjct: 143 GKGSASGKTNATIK 156

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  308 bits (791), Expect = e-106
 Identities = 97/134 (72%), Positives = 110/134 (82%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23  LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83  ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142

Query: 387 SMGSQSGKTSKKIV 400
             GS SGKT+  I 
Sbjct: 143 GKGSASGKTNATIK 156

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  308 bits (791), Expect = e-105
 Identities = 104/134 (77%), Positives = 115/134 (85%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162

Query: 253 SMGSQSGKTSKKIV 266
             GS++GKTSKKI 
Sbjct: 163 RFGSRNGKTSKKIT 176

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  308 bits (791), Expect = e-105
 Identities = 104/134 (77%), Positives = 115/134 (85%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43  LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
           EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162

Query: 387 SMGSQSGKTSKKIV 400
             GS++GKTSKKI 
Sbjct: 163 RFGSRNGKTSKKIT 176

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  305 bits (784), Expect = e-104
 Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83

Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           IYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143

Query: 247 VVKKLESMGSQSGKTSKKIV 266
           VV+++E  G++SG   + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  305 bits (784), Expect = e-104
 Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)

Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
           L SD+ P+T ENFRALCTGEK         +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24  LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83

Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
           IYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+EG++
Sbjct: 84  IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143

Query: 381 VVKKLESMGSQSGKTSKKIV 400
           VV+++E  G++SG   + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  306 bits (785), Expect = e-104
 Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 7/141 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
           L +D VP TAENFRALCTGEKG G       +  S FHR+IP FM QGGDFT  +GTGG+
Sbjct: 40  LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99

Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
           SIYG+KF DENF   H  P +LSMANAGPNTNGSQFFITTV   WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159

Query: 246 DVVKKLESMGSQSGKTSKKIV 266
           +VVK +E  GSQ+GK +K + 
Sbjct: 160 EVVKSIEKCGSQNGKPTKSVC 180

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  306 bits (785), Expect = e-104
 Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 7/141 (4%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
           L +D VP TAENFRALCTGEKG G       +  S FHR+IP FM QGGDFT  +GTGG+
Sbjct: 40  LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99

Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
           SIYG+KF DENF   H  P +LSMANAGPNTNGSQFFITTV   WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159

Query: 380 DVVKKLESMGSQSGKTSKKIV 400
           +VVK +E  GSQ+GK +K + 
Sbjct: 160 EVVKSIEKCGSQNGKPTKSVC 180

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  304 bits (782), Expect = e-104
 Identities = 103/141 (73%), Positives = 110/141 (78%), Gaps = 7/141 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
           L  DVVPKTA NFRALCTGE G G       FK S FHR+IPNFM QGGDFT  NGTGG+
Sbjct: 24  LYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83

Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
           SIYG KF DENF  KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGL
Sbjct: 84  SIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143

Query: 246 DVVKKLESMGSQSGKTSKKIV 266
           DVVK +ES GSQSGK  K  +
Sbjct: 144 DVVKAVESNGSQSGKPVKDCM 164

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  304 bits (782), Expect = e-104
 Identities = 103/141 (73%), Positives = 110/141 (78%), Gaps = 7/141 (4%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
           L  DVVPKTA NFRALCTGE G G       FK S FHR+IPNFM QGGDFT  NGTGG+
Sbjct: 24  LYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83

Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
           SIYG KF DENF  KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGL
Sbjct: 84  SIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143

Query: 380 DVVKKLESMGSQSGKTSKKIV 400
           DVVK +ES GSQSGK  K  +
Sbjct: 144 DVVKAVESNGSQSGKPVKDCM 164

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  304 bits (782), Expect = e-104
 Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 1/135 (0%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 36  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155

Query: 253 SMGSQS-GKTSKKIV 266
           S  + S  K  K ++
Sbjct: 156 STKTDSRDKPLKDVI 170

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  304 bits (782), Expect = e-104
 Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 1/135 (0%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L    VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT  +GTGGKSIYG +F
Sbjct: 36  LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96  PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155

Query: 387 SMGSQS-GKTSKKIV 400
           S  + S  K  K ++
Sbjct: 156 STKTDSRDKPLKDVI 170

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  304 bits (780), Expect = e-104
 Identities = 90/132 (68%), Positives = 102/132 (77%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D+VPKTA+NFR LC   KG G+K STFHR+IP FM QGGD+T HNGTGG+SIYG KF
Sbjct: 48  LEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKHT  GILSMAN G +TNGSQFFIT  KT WLD +HVVFG VVEG+DVV K+ 
Sbjct: 108 PDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIA 167

Query: 253 SMGSQSGKTSKK 264
             GS+SG+  K 
Sbjct: 168 KYGSESGQVKKG 179

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  304 bits (780), Expect = e-104
 Identities = 90/132 (68%), Positives = 102/132 (77%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L  D+VPKTA+NFR LC   KG G+K STFHR+IP FM QGGD+T HNGTGG+SIYG KF
Sbjct: 48  LEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
            DENF LKHT  GILSMAN G +TNGSQFFIT  KT WLD +HVVFG VVEG+DVV K+ 
Sbjct: 108 PDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIA 167

Query: 387 SMGSQSGKTSKK 398
             GS+SG+  K 
Sbjct: 168 KYGSESGQVKKG 179

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  298 bits (765), Expect = e-102
 Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 4/138 (2%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L    VPKTA+NFR LC    G G+++STFHR+IPNFM QGGDFT  NGTGG+SIYG+KF
Sbjct: 28  LFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKF 87

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKK 250
            DENF+ KH   GILSMANAGPNTNGSQFFITT  T+WLD +HVVFG V +     VVK+
Sbjct: 88  ADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKE 147

Query: 251 LESMGSQSG--KTSKKIV 266
           +E++GS SG  +++ +  
Sbjct: 148 IEALGSSSGSVRSNTRPK 165

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  298 bits (765), Expect = e-102
 Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 4/138 (2%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
           L    VPKTA+NFR LC    G G+++STFHR+IPNFM QGGDFT  NGTGG+SIYG+KF
Sbjct: 28  LFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKF 87

Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKK 384
            DENF+ KH   GILSMANAGPNTNGSQFFITT  T+WLD +HVVFG V +     VVK+
Sbjct: 88  ADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKE 147

Query: 385 LESMGSQSG--KTSKKIV 400
           +E++GS SG  +++ +  
Sbjct: 148 IEALGSSSGSVRSNTRPK 165

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  296 bits (761), Expect = e-101
 Identities = 81/143 (56%), Positives = 102/143 (71%), Gaps = 6/143 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           KI L +DVVPKTAENFR  CTGE        G+K STFHRVI +FM QGGDF N +GTG 
Sbjct: 28  KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 87

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
            SIY   F DENF L+H+ PG+LSMAN+GP+TNG QFFIT  K  WLD +HVVFG +++G
Sbjct: 88  ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147

Query: 379 LDVVKKLESMGS-QSGKTSKKIV 400
           L V++K+E++ +  + K    +V
Sbjct: 148 LLVMRKIENVPTGPNNKPKLPVV 170

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  296 bits (761), Expect = e-101
 Identities = 79/140 (56%), Positives = 100/140 (71%), Gaps = 6/140 (4%)

Query: 133 LRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 187
           L +DVVPKTAENFR  CTGE        G+K STFHRVI +FM QGGDF N +GTG  SI
Sbjct: 31  LFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASI 90

Query: 188 YGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV 247
           Y   F DENF L+H+ PG+LSMAN+GP+TNG QFFIT  K  WLD +HVVFG +++GL V
Sbjct: 91  YRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLV 150

Query: 248 VKKLESMGS-QSGKTSKKIV 266
           ++K+E++ +  + K    +V
Sbjct: 151 MRKIENVPTGPNNKPKLPVV 170

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  296 bits (760), Expect = e-101
 Identities = 88/145 (60%), Positives = 101/145 (69%), Gaps = 4/145 (2%)

Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            +   +I   L     P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GT
Sbjct: 22  SEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGT 81

Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           GGKSIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT  T WLD RHVVFG V+
Sbjct: 82  GGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVL 140

Query: 377 EGLDVVKKLESMGSQS-GKTSKKIV 400
           +G+DVV ++E   + S  +  K + 
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVK 165

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  296 bits (760), Expect = e-101
 Identities = 87/135 (64%), Positives = 98/135 (72%), Gaps = 2/135 (1%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L     P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF
Sbjct: 32  LFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKF 91

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DEN  +KH   G LSMANAGPNTNGSQFFITT  T WLD RHVVFG V++G+DVV ++E
Sbjct: 92  ADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIE 150

Query: 253 SMGSQS-GKTSKKIV 266
              + S  +  K + 
Sbjct: 151 KTKTNSHDRPVKPVK 165

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  293 bits (753), Expect = 1e-99
 Identities = 73/143 (51%), Positives = 95/143 (66%), Gaps = 9/143 (6%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L SD+ PKT +NF  LC+GEKG G        +K STFHRV+ NFM QGGDF+  NG GG
Sbjct: 40  LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  F+DENF LKH    +LSMAN G +TNGSQFFITT     LD  HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159

Query: 245 LDVVKKLESMGSQSG-KTSKKIV 266
            +V++++E++ + +  +    + 
Sbjct: 160 FEVIEQIENLKTDAASRPYADVR 182

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  293 bits (753), Expect = 1e-99
 Identities = 73/143 (51%), Positives = 95/143 (66%), Gaps = 9/143 (6%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SD+ PKT +NF  LC+GEKG G        +K STFHRV+ NFM QGGDF+  NG GG
Sbjct: 40  LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  F+DENF LKH    +LSMAN G +TNGSQFFITT     LD  HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159

Query: 379 LDVVKKLESMGSQSG-KTSKKIV 400
            +V++++E++ + +  +    + 
Sbjct: 160 FEVIEQIENLKTDAASRPYADVR 182

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  293 bits (752), Expect = 1e-99
 Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 9/143 (6%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149

Query: 245 LDVVKKLESMGSQSG-KTSKKIV 266
            +VV+++E+  + +  K   ++ 
Sbjct: 150 QEVVREIENQKTDAASKPFAEVR 172

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  293 bits (752), Expect = 1e-99
 Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 9/143 (6%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L SDV PKT ENFR LCTGEKG G        +K   FHRV+ +FM QGGDF+  NG GG
Sbjct: 30  LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  FEDE+F +KH    +LSMAN G +TNGSQFFITT  T  LD  HVVFG V+ G
Sbjct: 90  ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149

Query: 379 LDVVKKLESMGSQSG-KTSKKIV 400
            +VV+++E+  + +  K   ++ 
Sbjct: 150 QEVVREIENQKTDAASKPFAEVR 172

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  292 bits (751), Expect = 1e-99
 Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 9/143 (6%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L +D+ P+T  NF  LCTG  G G        +K STFHRVI NFM QGGDFT  +GTGG
Sbjct: 27  LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 86

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  F+DE F +KH  P ++SMAN GPNTNGSQFFITT     L+N HVVFG VV G
Sbjct: 87  ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146

Query: 245 LDVVKKLESMGSQS-GKTSKKIV 266
            +VV K+E + + S  +    +V
Sbjct: 147 QEVVTKIEYLKTNSKNRPLADVV 169

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  292 bits (751), Expect = 1e-99
 Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 9/143 (6%)

Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           L +D+ P+T  NF  LCTG  G G        +K STFHRVI NFM QGGDFT  +GTGG
Sbjct: 27  LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 86

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
           +SIYG  F+DE F +KH  P ++SMAN GPNTNGSQFFITT     L+N HVVFG VV G
Sbjct: 87  ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146

Query: 379 LDVVKKLESMGSQS-GKTSKKIV 400
            +VV K+E + + S  +    +V
Sbjct: 147 QEVVTKIEYLKTNSKNRPLADVV 169

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  289 bits (742), Expect = 1e-97
 Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 9/146 (6%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           K  L  ++VPKT+ENFR  CTGE        G+K++ FHRVI  FM QGGDF NHNG+G 
Sbjct: 77  KFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS 136

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-- 376
            SIYG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG ++  
Sbjct: 137 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN 196

Query: 377 EGLDVVKKLESMGSQS--GKTSKKIV 400
           + L ++KK+E++       K    I 
Sbjct: 197 DSLLLLKKIENVSVTPYIYKPKIPIN 222

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  289 bits (742), Expect = 1e-97
 Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 9/143 (6%)

Query: 133 LRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 187
           L  ++VPKT+ENFR  CTGE        G+K++ FHRVI  FM QGGDF NHNG+G  SI
Sbjct: 80  LFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSI 139

Query: 188 YGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGL 245
           YG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG ++  + L
Sbjct: 140 YGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSL 199

Query: 246 DVVKKLESMGSQS--GKTSKKIV 266
            ++KK+E++       K    I 
Sbjct: 200 LLLKKIENVSVTPYIYKPKIPIN 222

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  286 bits (734), Expect = 2e-94
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 10/152 (6%)

Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
           G+   +IV  L +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGG
Sbjct: 26  GERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGG 85

Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
           DF+N NGTGG+SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +
Sbjct: 86  DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 145

Query: 369 HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
           HVVFG V++G+ V K LE++  +  K +K  V
Sbjct: 146 HVVFGQVIKGMGVAKILENVEVKGEKPAKLCV 177

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  286 bits (734), Expect = 2e-94
 Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 8/142 (5%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGGDF+N NGTGG
Sbjct: 36  LFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGG 95

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +HVVFG V++G
Sbjct: 96  ESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG 155

Query: 245 LDVVKKLESMGSQSGKTSKKIV 266
           + V K LE++  +  K +K  V
Sbjct: 156 MGVAKILENVEVKGEKPAKLCV 177

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  263 bits (674), Expect = 3e-87
 Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 31/165 (18%)

Query: 133 LRSDVVPKTAENFRALCTGEKG-----------------FGFKDSTFHRVIPNFMCQGGD 175
           L  D  P   ENF  L  G+                     ++   FH V+ N     GD
Sbjct: 35  LFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGD 94

Query: 176 FTNHNGTGGKSIYGNKFED---ENFTLKHTGPGILSMA----NAGPNTNGSQFFIT---- 224
             N NG+   ++Y ++       ++   H   G+LS+      +G     S F IT    
Sbjct: 95  IYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDI 154

Query: 225 --TVKTAWLDNRHVVFGSVVEGLDVVKKLESM-GSQSGKTSKKIV 266
             +     LD   VV G V  GLDV+ K+ SM    +G+      
Sbjct: 155 RPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFS 199

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  263 bits (674), Expect = 3e-87
 Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 31/165 (18%)

Query: 267 LRSDVVPKTAENFRALCTGEKG-----------------FGFKDSTFHRVIPNFMCQGGD 309
           L  D  P   ENF  L  G+                     ++   FH V+ N     GD
Sbjct: 35  LFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGD 94

Query: 310 FTNHNGTGGKSIYGNKFED---ENFTLKHTGPGILSMA----NAGPNTNGSQFFIT---- 358
             N NG+   ++Y ++       ++   H   G+LS+      +G     S F IT    
Sbjct: 95  IYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDI 154

Query: 359 --TVKTAWLDNRHVVFGSVVEGLDVVKKLESM-GSQSGKTSKKIV 400
             +     LD   VV G V  GLDV+ K+ SM    +G+      
Sbjct: 155 RPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFS 199

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  206 bits (527), Expect = 4e-66
 Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 5/125 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L      KT +NF        G+ + +  FHRVI +FM Q GD +  +GTGG+SI+G
Sbjct: 18  HISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWG 73

Query: 324 NKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
           N+FEDE F  L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V +G  +V
Sbjct: 74  NEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIV 133

Query: 383 KKLES 387
             +E 
Sbjct: 134 LDIEK 138

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  205 bits (525), Expect = 1e-65
 Identities = 61/123 (49%), Positives = 78/123 (63%), Gaps = 5/123 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L      KT +NF        G+ + +  FHRVI +FM Q GD +  +GTGG+SI+GN+
Sbjct: 20  SLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNE 75

Query: 192 FEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE F  L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V +G  +V  
Sbjct: 76  FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLD 135

Query: 251 LES 253
           +E 
Sbjct: 136 IEK 138

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  207 bits (530), Expect = 6e-66
 Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 5/126 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            + L     PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG
Sbjct: 24  VLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYG 79

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            +FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V
Sbjct: 80  KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139

Query: 383 KKLESM 388
            ++  +
Sbjct: 140 NRVGMV 145

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  206 bits (527), Expect = 2e-65
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +
Sbjct: 26  ELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQ 81

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V +
Sbjct: 82  FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141

Query: 251 LESM 254
           +  +
Sbjct: 142 VGMV 145

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  204 bits (522), Expect = 3e-65
 Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 5/126 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            + L     PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG
Sbjct: 24  VLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYG 79

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            +FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V
Sbjct: 80  KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139

Query: 383 KKLESM 388
            ++  +
Sbjct: 140 NRVGMV 145

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  203 bits (519), Expect = 7e-65
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PKT +NF  L    +G+ +  + FHR+I +FM QGGD T   G GG SIYG +
Sbjct: 26  ELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQ 81

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V +
Sbjct: 82  FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141

Query: 251 LESM 254
           +  +
Sbjct: 142 VGMV 145

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  204 bits (522), Expect = 3e-65
 Identities = 67/137 (48%), Positives = 83/137 (60%), Gaps = 8/137 (5%)

Query: 255 GSQSGKTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFT 311
            S    TS       L     PKT ENF        G+ +   TFHR+I  FM Q GD T
Sbjct: 22  DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPT 78

Query: 312 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
              G GG+SI+G +FEDE + TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H 
Sbjct: 79  G-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 137

Query: 371 VFGSVVEGLDVVKKLES 387
           VFG V +G++VV+++ +
Sbjct: 138 VFGRVTKGMEVVQRISN 154

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  204 bits (522), Expect = 4e-65
 Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 7/141 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L     PKT ENF        G+ +   TFHR+I  FM Q GD T   G GG+SI+G +
Sbjct: 36  KLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGE 91

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE + TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV++
Sbjct: 92  FEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQR 151

Query: 251 LESM--GSQSGKTSKKIVLRS 269
           + ++    ++ K  + + + +
Sbjct: 152 ISNVKVNPKTDKPYEDVSIIN 172

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  199 bits (509), Expect = 6e-63
 Identities = 65/126 (51%), Positives = 80/126 (63%), Gaps = 5/126 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           ++ L     PKT  NF  LC  E GF + ++ FHRVIPNF+ QGGD T   G GGKSIYG
Sbjct: 51  EVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYG 106

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
             FEDE N  LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  V + +  +
Sbjct: 107 EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCI 166

Query: 383 KKLESM 388
           + + S+
Sbjct: 167 ENIASV 172

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  198 bits (506), Expect = 2e-62
 Identities = 65/124 (52%), Positives = 78/124 (62%), Gaps = 5/124 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PKT  NF  LC  E GF + ++ FHRVIPNF+ QGGD T   G GGKSIYG  
Sbjct: 53  ELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEY 108

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE N  LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  V + +  ++ 
Sbjct: 109 FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIEN 168

Query: 251 LESM 254
           + S+
Sbjct: 169 IASV 172

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  188 bits (480), Expect = 5e-59
 Identities = 63/126 (50%), Positives = 79/126 (62%), Gaps = 5/126 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           KI +  +  PKT ENF ALC     + +    FHR I  FM Q GD T   G GG SI+G
Sbjct: 13  KIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 68

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
            KFEDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++GL+ +
Sbjct: 69  KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128

Query: 383 KKLESM 388
            +LE +
Sbjct: 129 DELEKL 134

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  187 bits (476), Expect = 2e-58
 Identities = 61/124 (49%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            +  +  PKT ENF ALC     + +    FHR I  FM Q GD T   G GG SI+G K
Sbjct: 15  EVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKK 70

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++GL+ + +
Sbjct: 71  FEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDE 130

Query: 251 LESM 254
           LE +
Sbjct: 131 LEKL 134

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  187 bits (477), Expect = 2e-58
 Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 9/130 (6%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           K  L     PK  +NF AL     G+ +K++ FH+ I  F+ QGGD T   G GG+SIYG
Sbjct: 29  KFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYG 84

Query: 324 NKFEDENF-TLKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
             F+DE +  LK+   GILSMA+ G    PNTNGSQFFIT      L+  +V+FG +++G
Sbjct: 85  RYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDG 144

Query: 379 LDVVKKLESM 388
            + +  LE+ 
Sbjct: 145 FETLNTLENC 154

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  186 bits (474), Expect = 9e-58
 Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 9/128 (7%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PK  +NF AL     G+ +K++ FH+ I  F+ QGGD T   G GG+SIYG  
Sbjct: 31  ELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRY 86

Query: 192 FEDENF-TLKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
           F+DE +  LK+   GILSMA+ G    PNTNGSQFFIT      L+  +V+FG +++G +
Sbjct: 87  FDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFE 146

Query: 247 VVKKLESM 254
            +  LE+ 
Sbjct: 147 TLNTLENC 154

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  186 bits (475), Expect = 9e-58
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 15/137 (10%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH----NGTGGK 319
            I L +D+ P+  ++F  LC     + F D+ FHR I NFM QGG              +
Sbjct: 19  NIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQ 75

Query: 320 SIY-------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
           S         G  FEDE +  L H G G+LSMAN G ++N S+FFIT      L+N+H +
Sbjct: 76  SPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTI 135

Query: 372 FGSVVEGLDVVKKLESM 388
           FG VV GLDV+++ E +
Sbjct: 136 FGRVVGGLDVLRQWEKL 152

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  185 bits (471), Expect = 3e-57
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 15/134 (11%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH----NGTGGKSIY 188
           L +D+ P+  ++F  LC     + F D+ FHR I NFM QGG              +S  
Sbjct: 22  LHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPR 78

Query: 189 -------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
                  G  FEDE +  L H G G+LSMAN G ++N S+FFIT      L+N+H +FG 
Sbjct: 79  SISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGR 138

Query: 241 VVEGLDVVKKLESM 254
           VV GLDV+++ E +
Sbjct: 139 VVGGLDVLRQWEKL 152

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  186 bits (473), Expect = 1e-57
 Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 5/126 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            + L  D+ PKT ENF  LC  +K + +  + FHR I NF+ QGGD T   GTGG+S +G
Sbjct: 32  NLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWG 87

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
             F+DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG VV G DV+
Sbjct: 88  KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVL 147

Query: 383 KKLESM 388
             +E++
Sbjct: 148 TAMENV 153

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  184 bits (470), Expect = 4e-57
 Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 7/144 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L  D+ PKT ENF  LC  +K + +  + FHR I NF+ QGGD T   GTGG+S +G  
Sbjct: 34  ELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKP 89

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           F+DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG VV G DV+  
Sbjct: 90  FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTA 149

Query: 251 LESM--GSQSGKTSKKIVLRSDVV 272
           +E++    ++ +  ++I + +  V
Sbjct: 150 MENVESDPKTDRPKEEIRIDATTV 173

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  181 bits (462), Expect = 5e-56
 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 6/125 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L S   PK   NF  LC   + + + ++ FHRV+P F+ QGGD T   G+GG+SIYG
Sbjct: 37  DIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYG 92

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDV 381
             F+DE +  L+    G+++MANAG + NGSQFF T  +   L+N+H +FG V  + +  
Sbjct: 93  APFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYN 152

Query: 382 VKKLE 386
           + +L 
Sbjct: 153 MLRLS 157

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  180 bits (458), Expect = 2e-55
 Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 6/123 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L S   PK   NF  LC   + + + ++ FHRV+P F+ QGGD T   G+GG+SIYG  
Sbjct: 39  ELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAP 94

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVK 249
           F+DE +  L+    G+++MANAG + NGSQFF T  +   L+N+H +FG V  + +  + 
Sbjct: 95  FKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNML 154

Query: 250 KLE 252
           +L 
Sbjct: 155 RLS 157

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  168 bits (428), Expect = 6e-51
 Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 22/146 (15%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDS------------TFHRVIPNFM 304
            T++   KI L  +  PKT  NF  L  G K +  +++             FHRVI  FM
Sbjct: 29  HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 88

Query: 305 CQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTA 363
            QGGD T   G GG    G KF DE +  L+   P +L+MANAGP TNGSQFFIT  KT 
Sbjct: 89  IQGGDPTG-TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144

Query: 364 WLDNRHVVFGSVV--EGLDVVKKLES 387
            L+ RH +FG V+  E   VV+ +  
Sbjct: 145 HLNRRHTIFGEVIDAESQRVVEAISK 170

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  167 bits (424), Expect = 2e-50
 Identities = 58/137 (42%), Positives = 72/137 (52%), Gaps = 19/137 (13%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDS------------TFHRVIPNFMCQGGDFTNH 179
            L  +  PKT  NF  L  G K +  +++             FHRVI  FM QGGD T  
Sbjct: 38  ALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG- 96

Query: 180 NGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVF 238
            G GG    G KF DE +  L+   P +L+MANAGP TNGSQFFIT  KT  L+ RH +F
Sbjct: 97  TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIF 153

Query: 239 GSVV--EGLDVVKKLES 253
           G V+  E   VV+ +  
Sbjct: 154 GEVIDAESQRVVEAISK 170

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  163 bits (413), Expect = 3e-48
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 22/143 (15%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK--SI 321
            + L +   P    NF  LC   +G+ + ++ FHRV+ +F+ QGGD T   G GG   + 
Sbjct: 34  DVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTF 89

Query: 322 YGNKFEDE-NFTLKHTGPGILSMANAGPN--------------TNGSQFFITTVKTAWLD 366
            G  F+ E +  LK    G++ +AN G +              TNG+QFFIT  +   L+
Sbjct: 90  DGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLN 149

Query: 367 NRHVVFGSVV-EGLDVVKKLESM 388
           N + +FG V    L  + K   +
Sbjct: 150 NAYTLFGKVTGHTLYNLMKFNDL 172

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  161 bits (409), Expect = 1e-47
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 22/140 (15%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK--SIYGN 190
           L +   P    NF  LC   +G+ + ++ FHRV+ +F+ QGGD T   G GG   +  G 
Sbjct: 37  LWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTFDGK 92

Query: 191 KFEDE-NFTLKHTGPGILSMANAGPN--------------TNGSQFFITTVKTAWLDNRH 235
            F+ E +  LK    G++ +AN G +              TNG+QFFIT  +   L+N +
Sbjct: 93  PFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAY 152

Query: 236 VVFGSVV-EGLDVVKKLESM 254
            +FG V    L  + K   +
Sbjct: 153 TLFGKVTGHTLYNLMKFNDL 172

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  127 bits (321), Expect = 2e-35
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           K+ L     PKT ENF      +KG  +  + FHRVI  FM QGG F         +   
Sbjct: 16  KLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKPT--D 69

Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
               +E N  LK+     ++MA    P++  +QFFI      +L++         + VFG
Sbjct: 70  APIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFG 128

Query: 374 SVVEGLDVVKK 384
            VVEG D+V K
Sbjct: 129 KVVEGQDIVDK 139

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  125 bits (316), Expect = 1e-34
 Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
            K  L     PKT ENF      +KG  +  + FHRVI  FM QGG F         +  
Sbjct: 15  IKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKPT-- 68

Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVF 238
                +E N  LK+     ++MA    P++  +QFFI      +L++         + VF
Sbjct: 69  DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVF 127

Query: 239 GSVVEGLDVVKK 250
           G VVEG D+V K
Sbjct: 128 GKVVEGQDIVDK 139

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  125 bits (317), Expect = 6e-35
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I    D  P+T +NF   C   +GF + ++ FHRVI  FM QGG F        +    
Sbjct: 12  VIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE---PGMKQKATK 65

Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
              ++E N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF 
Sbjct: 66  EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124

Query: 374 SVVEGLDVVKK 384
            VV+G+D V K
Sbjct: 125 EVVDGMDEVDK 135

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  123 bits (312), Expect = 3e-34
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
              +   D  P+T +NF   C   +GF + ++ FHRVI  FM QGG F        +   
Sbjct: 11  IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE---PGMKQKAT 64

Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVF 238
               ++E N  LK+T  G L+MA    P++  +QFFI  V   +L+          + VF
Sbjct: 65  KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVF 123

Query: 239 GSVVEGLDVVKK 250
             VV+G+D V K
Sbjct: 124 AEVVDGMDEVDK 135

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  122 bits (309), Expect = 1e-33
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 14/131 (10%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           ++ L     P + +NF        GF + ++TFHRVIP FM QGG FT       K    
Sbjct: 17  ELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQKKP--N 70

Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVV 376
              ++E +  L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG VV
Sbjct: 71  PPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV 129

Query: 377 EGLDVVKKLES 387
           +G+DV  K+  
Sbjct: 130 KGMDVADKISQ 140

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  120 bits (304), Expect = 5e-33
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)

Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
            +  L     P + +NF        GF + ++TFHRVIP FM QGG FT       K   
Sbjct: 16  IELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQKKP-- 69

Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSV 241
               ++E +  L++T  G ++MA  A  ++  SQFFI     A+LD+      + VFG V
Sbjct: 70  NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKV 128

Query: 242 VEGLDVVKKLES 253
           V+G+DV  K+  
Sbjct: 129 VKGMDVADKISQ 140

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  120 bits (303), Expect = 5e-31
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 38/157 (24%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGD-------FTNHNGT 316
           +IVL     P TA NF  L   E+ F +      R    F+ Q GD       F + +  
Sbjct: 191 RIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246

Query: 317 GGKSI-------------YGNKFED-----ENFTLKHTGPGILSMANAG--PNTNGSQFF 356
             +++             YG+  E+         +     G ++MA      ++  SQ F
Sbjct: 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVF 306

Query: 357 ITTVK-------TAWLDNRHVVFGSVVEGLDVVKKLE 386
               +       +  LD R+ VFG V +  D +  L+
Sbjct: 307 WLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  117 bits (295), Expect = 7e-30
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 38/158 (24%)

Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGD-------FTNHNG 181
           F+  L     P TA NF  L   E+ F +      R    F+ Q GD       F + + 
Sbjct: 190 FRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPST 245

Query: 182 TGGKSI-------------YGNKFED-----ENFTLKHTGPGILSMANAG--PNTNGSQF 221
              +++             YG+  E+         +     G ++MA      ++  SQ 
Sbjct: 246 EKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQV 305

Query: 222 FITTVK-------TAWLDNRHVVFGSVVEGLDVVKKLE 252
           F    +       +  LD R+ VFG V +  D +  L+
Sbjct: 306 FWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.98
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	91.52
3kop_A	188	Uncharacterized protein; protein with A cyclophili	85.41

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.6e-44  Score=321.38  Aligned_cols=148  Identities=76%  Similarity=1.269  Sum_probs=139.6

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+.+.++|  +|+.+.+|++++||++||+|++||+|+|+.||||+|+||+||||++.++|.|+.++||.+|++|++.+
T Consensus        11 ~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l   90 (165)
T 2z6w_A           11 DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTL   90 (165)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCccccc
Confidence            3445566666  99999999999999999998899999999999999999999999988889999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +|.++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|+++++.+++|+++|+|.+
T Consensus        91 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  160 (165)
T 2z6w_A           91 KHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD  160 (165)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             ccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999998999999999974

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.8e-44  Score=322.95  Aligned_cols=147  Identities=65%  Similarity=1.139  Sum_probs=138.8

Q ss_pred             CCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCC
Q psy443          257 QSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK  334 (403)
Q Consensus       257 ~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~  334 (403)
                      ..+.+.++|  +|+.+.+|++++||++||++++|++|+|+.||||+|+||+||||++.++|.|+.++||.+|++|++.++
T Consensus        19 i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~l~   98 (172)
T 2cmt_A           19 IGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLR   98 (172)
T ss_dssp             ETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSC
T ss_pred             ECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCcccccccCcc
Confidence            344556665  999999999999999999988888899999999999999999999988899999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          335 HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       335 h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      |+++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|+++++.+++|+++|+|.+
T Consensus        99 h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  167 (172)
T 2cmt_A           99 HEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISR  167 (172)
T ss_dssp             CCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEE
T ss_pred             cCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999974

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=3.9e-44  Score=322.41  Aligned_cols=146  Identities=71%  Similarity=1.224  Sum_probs=138.5

Q ss_pred             CCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy443          258 SGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKH  335 (403)
Q Consensus       258 ~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h  335 (403)
                      .+.+.++|  +|+.+.+|++++||++||+|++|++|+|+.||||+|+|||||||++.+++.|+.++||.+|++|++.++|
T Consensus        21 ~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h  100 (173)
T 2r99_A           21 GNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH  100 (173)
T ss_dssp             TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCC
T ss_pred             CCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCcccCccc
Confidence            34455665  9999999999999999999988988999999999999999999999889999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          336 TGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       336 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +++|+|||||.+||+|+|||||++.++|+||++|+|||+|++|||||++|+++++++++|+++|+|.+
T Consensus       101 ~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  168 (173)
T 2r99_A          101 TGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIAD  168 (173)
T ss_dssp             CSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999974

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=4.1e-44  Score=322.43  Aligned_cols=148  Identities=72%  Similarity=1.139  Sum_probs=138.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCc-------cCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~-------Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      +..+++.++|  +|+.+.+|++++||+.||++++|++       |+|+.||||+|+|||||||++.++|+|+.++||.+|
T Consensus        11 ~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f   90 (173)
T 2igv_A           11 TIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKF   90 (173)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             EECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcc
Confidence            3455666776  9999999999999999999877732       999999999999999999999889999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +||++.++|+++|+|||||.+||+|+|||||++.++|+||++|+|||+|++|||||++|+.+++.+++|+++|+|.+
T Consensus        91 ~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~  167 (173)
T 2igv_A           91 PDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIAD  167 (173)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             cCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999974

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=8e-44  Score=318.14  Aligned_cols=148  Identities=68%  Similarity=1.095  Sum_probs=140.3

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+.+.++|  +|+.+.+|++++||++||+|+.|++|+|+.||||+|+||+||||+..+++.|+.++++.+|++|++.+
T Consensus        10 ~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~~~l   89 (164)
T 3pmp_A           10 SINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQV   89 (164)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcccccccccc
Confidence            4445666666  99999999999999999998899999999999999999999999887899999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +|+++|+|||||.+|++|+|||||++.++|+||++|+|||||++|||||++|+++++++++|+++|+|++
T Consensus        90 ~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v~I~~  159 (164)
T 3pmp_A           90 KHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITD  159 (164)
T ss_dssp             CCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcccCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=7.7e-44  Score=323.54  Aligned_cols=148  Identities=62%  Similarity=1.021  Sum_probs=138.2

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCc-------cCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~-------Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      .+.+.+.++|  +|+.+.+|++++||+.||++++|++       |+|+.||||+|+|||||||++.++|+|+.++||.+|
T Consensus        27 ~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~f  106 (186)
T 2poy_A           27 SIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKF  106 (186)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-CB
T ss_pred             eECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCcc
Confidence            3345556666  9999999999999999999888885       999999999999999999998889999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +||++.++|+++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|+++++.+++|+++|+|.+
T Consensus       107 ~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~  183 (186)
T 2poy_A          107 RDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITA  183 (186)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             cCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999975

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=9.4e-44  Score=319.21  Aligned_cols=147  Identities=59%  Similarity=1.059  Sum_probs=137.6

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCc-------cCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~-------Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      .+.+++.++|  +|+.+.+|++++||++||+++ |++       |+++.||||+|+|||||||++.++++|+.++||.+|
T Consensus        11 ~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f   89 (170)
T 1qng_A           11 SIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSF   89 (170)
T ss_dssp             EESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             eECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCcc
Confidence            4455666776  999999999999999999765 554       999999999999999999998889999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      ++|++.++|+++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|+++++.+++|+++|+|.+
T Consensus        90 ~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~  166 (170)
T 1qng_A           90 TDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             cccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999974

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.2e-43  Score=318.46  Aligned_cols=147  Identities=60%  Similarity=0.966  Sum_probs=138.2

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+.+.++|  +|+.+.+|++++||++||+|++|++|+|+.||||+|+||+||||+..+++.|+.++||.+|++|++.+
T Consensus        19 ~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l   98 (172)
T 2haq_A           19 MIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNV   98 (172)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCCCCS
T ss_pred             EECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcCCCc
Confidence            4445566666  99999999999999999999999999999999999999999999877789999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      +|. +|+|||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+++++++ ++|+++|+|.+
T Consensus        99 ~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  168 (172)
T 2haq_A           99 KHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVA  168 (172)
T ss_dssp             CCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             ccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEE
Confidence            999 9999999999999999999999999999999999999999999999999999986 59999999974

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.4e-43  Score=318.49  Aligned_cols=147  Identities=54%  Similarity=0.898  Sum_probs=136.8

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCC---------CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG---------FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g---------~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      .+.+.+.++|  +|+.+.+|+|++||+.||+++++         + |+|+.||||+|+|||||||++.+++.|++++||.
T Consensus        14 ~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~   92 (177)
T 1a58_A           14 TIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG   92 (177)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSS
T ss_pred             EECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCccCCCCCCCCcccCC
Confidence            4455666776  99999999999999999987543         5 9999999999999999999988899999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      .|+||++.++|+++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|++++++. ++|+++|+|.+
T Consensus        93 ~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~  172 (177)
T 1a58_A           93 MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN  172 (177)
T ss_dssp             CBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             cccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999975 89999999974

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3.5e-43  Score=317.89  Aligned_cols=147  Identities=50%  Similarity=0.833  Sum_probs=136.6

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCC---------CCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK---------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~---------g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      .+.+.+.++|  +|+.+.+|+|++||+.||+|++         ++ |+++.||||+|+|||||||++.+++.|+.++||.
T Consensus        17 ~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~   95 (179)
T 2wfi_A           17 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGG   95 (179)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSS
T ss_pred             EECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCCCCCCCcccCC
Confidence            3445566666  9999999999999999998754         45 9999999999999999999988889999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      .|+||++.++|+++|+|||||.+|++|+|||||++.++|+||++|+|||+|++|||||++|++++++. ++|+++|+|.+
T Consensus        96 ~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  175 (179)
T 2wfi_A           96 FFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILS  175 (179)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEE
T ss_pred             cccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999975 89999999974

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.7e-43  Score=319.78  Aligned_cols=146  Identities=62%  Similarity=1.017  Sum_probs=137.3

Q ss_pred             CCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy443          258 SGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKH  335 (403)
Q Consensus       258 ~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h  335 (403)
                      .+.+.++|  +|+.+.+|++++||+.||+|++|++|+|+.||||+|+|||||||+..++|.|+.++||.+|++|++.++|
T Consensus        25 ~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h  104 (188)
T 3ich_A           25 GDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKH  104 (188)
T ss_dssp             TTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCC
T ss_pred             CCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccccCccc
Confidence            34455665  9999999999999999999989999999999999999999999987778999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          336 TGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       336 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      +++|+|||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+++++++ ++|+++|+|.+
T Consensus       105 ~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~  173 (188)
T 3ich_A          105 YGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIAD  173 (188)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             CCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999986 59999999974

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=5.8e-43  Score=317.59  Aligned_cols=148  Identities=71%  Similarity=1.170  Sum_probs=140.8

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ++.+++.++|  +|+.+.+|++++||++||+++.|++|+|+.||||+|+|||||||+..+++.|+.++++..|++|++.+
T Consensus        30 ~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de~~~l  109 (184)
T 3rdd_A           30 AVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFIL  109 (184)
T ss_dssp             EETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCccccc
Confidence            4456666776  99999999999999999999899999999999999999999999888899999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +|+++|+|||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+++++++++|+++|+|++
T Consensus       110 ~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~  179 (184)
T 3rdd_A          110 KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD  179 (184)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             ccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.3e-43  Score=318.24  Aligned_cols=147  Identities=49%  Similarity=0.819  Sum_probs=136.4

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCC---------CCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK---------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~---------g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      .+.+.+.++|  +|+.+.+|++++||+.||+|++         ++ |+|+.||||+|+|||||||++.+++.|+.++||.
T Consensus        27 ~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~  105 (192)
T 2he9_A           27 EINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGG  105 (192)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSS
T ss_pred             EECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcCcccCCCCCCCCcccCC
Confidence            3445556666  9999999999999999998754         46 9999999999999999999988899999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      .|+||++.++|+++|+|||||.+|++|+||||||+.++|+||++|+|||+|++|||||++|++++++. ++|+++|+|.+
T Consensus       106 ~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  185 (192)
T 2he9_A          106 YFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVID  185 (192)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             cccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999975 89999999974

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.3e-42  Score=315.89  Aligned_cols=148  Identities=60%  Similarity=0.990  Sum_probs=139.1

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      +..+++.++|  +|+.+.+|++++||++||++++|+.|+|+.||||+|+|||||||++.+++.|+.++++..|++|++.+
T Consensus        20 ~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de~~~~   99 (185)
T 4fru_A           20 RIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKL   99 (185)
T ss_dssp             EETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCcccccc
Confidence            4456667777  99999999999999999998888449999999999999999999998899999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      +|+++|+|||||.+|++|+|||||++.++|+||++|+|||||++|||||++|++++++. ++|+++|+|.+
T Consensus       100 ~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 4fru_A          100 KHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIAD  170 (185)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             CcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999975 89999999974

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.6e-42  Score=314.50  Aligned_cols=148  Identities=61%  Similarity=1.012  Sum_probs=140.0

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+.+.++|  +|+.+.+|++++||+.||++++|++|+++.||||+|+||+||||+..+.+.|+.++++..|++|++.+
T Consensus        35 ~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l  114 (193)
T 3k2c_A           35 YANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFEL  114 (193)
T ss_dssp             EETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCCCS
T ss_pred             eECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCccccccccc
Confidence            4445566666  99999999999999999998888889999999999999999999888899999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCcc--ccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTS--KKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~--~~i~I~~  403 (403)
                      +|+++|+|||||.+|++|+|||||+++++|+||++|+|||||++|||||++|+++++++++|+  ++|+|.+
T Consensus       115 ~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~  186 (193)
T 3k2c_A          115 KHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRD  186 (193)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEE
T ss_pred             ccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999  9999975

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.4e-42  Score=313.48  Aligned_cols=147  Identities=54%  Similarity=0.934  Sum_probs=135.4

Q ss_pred             CCCccccee--eeccccCCcchhhHHHhhcCCCC-----CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCC
Q psy443          257 QSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE  329 (403)
Q Consensus       257 ~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g-----~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e  329 (403)
                      ..+.+.++|  +|+.+.+|++++||++||+++.+     ++|+|+.||||+|+|||||||++.++|.|+.++||.+|++|
T Consensus        19 i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE   98 (177)
T 1mzw_A           19 IGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADE   98 (177)
T ss_dssp             ETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCC
T ss_pred             ECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCc
Confidence            344556665  99999999999999999976553     24999999999999999999998889999999999999999


Q ss_pred             CCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          330 NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       330 ~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      ++.++|+++|+|||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|++++++ +++|+++|+|.+
T Consensus        99 ~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  173 (177)
T 1mzw_A           99 NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQ  173 (177)
T ss_dssp             CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             ccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999995 589999999974

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=4.8e-43  Score=315.03  Aligned_cols=141  Identities=62%  Similarity=1.028  Sum_probs=105.4

Q ss_pred             cee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcE
Q psy443          263 KKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGI  340 (403)
Q Consensus       263 ~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~  340 (403)
                      ++|  +|+.+.+|++++||++||+|++|++|+++.||||+|+||+||||+..++|.|++++||.+|++|+..++|+++|+
T Consensus        22 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~~~h~~~G~  101 (172)
T 2c3b_A           22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGI  101 (172)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------------CHHHHHTCE
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCcccccccCCCeE
Confidence            554  999999999999999999988998899999999999999999997667899999999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEe--cHHHHHHHHhCCCCCC--CccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vie--G~dvl~~i~~~~t~~~--~P~~~i~I~~  403 (403)
                      |||||.+|++|+|||||++.++|+||++|+|||+|++  |||||++|++++++++  +|+++|+|.+
T Consensus       102 lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~  168 (172)
T 2c3b_A          102 LSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVN  168 (172)
T ss_dssp             EEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEE
T ss_pred             EEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEe
Confidence            9999999999999999999999999999999999999  9999999999999875  9999999974

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=7.7e-42  Score=303.75  Aligned_cols=137  Identities=47%  Similarity=0.785  Sum_probs=129.0

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+|+.||||+|+||+||||+.+ +|.|++++||.+|++|.. .++|+++|+|
T Consensus        17 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l   92 (160)
T 2fu0_A           17 IHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMV   92 (160)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCBTTBCSSSSSEE
T ss_pred             EEEEEeCCCChHHHHHHHHHh--ccCc-cCCCEEEEEECCCEEEeCCcCC-CCCCCCcccCCCccccccCCcccCCceEE
Confidence            345999999999999999999  6788 9999999999999999999975 788999999999999987 6899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|++++++ +++|+++|+|.+
T Consensus        93 smA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  155 (160)
T 2fu0_A           93 SMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  155 (160)
T ss_dssp             EECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             EEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999997 589999999863

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2e-41  Score=305.28  Aligned_cols=136  Identities=49%  Similarity=0.802  Sum_probs=128.9

Q ss_pred             eeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEEE
Q psy443          264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGILS  342 (403)
Q Consensus       264 ~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~ls  342 (403)
                      .|+|+.+.+|++++||+.||  +.|| |+|+.||||+|+||+||||+.+ ++.|+.++||.+|++|.. .++|+++|+||
T Consensus        34 ~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~ls  109 (176)
T 2a2n_A           34 HTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLS  109 (176)
T ss_dssp             EEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCCTTCCSCSSSEEE
T ss_pred             EEEEeCCCChHHHHHHHHHh--hcCc-cCCCEEEEEECCcEEEccCCCC-CCCCCCcccCCccccccccccccCCceEEE
Confidence            44999999999999999999  6788 9999999999999999999975 788999999999999988 69999999999


Q ss_pred             EecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC--CCCccccEEEeC
Q psy443          343 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVCFN  403 (403)
Q Consensus       343 ma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~--~~~P~~~i~I~~  403 (403)
                      |||.+|++|+|||||+++++|+||++|+|||+|++|||||++|++++++  +++|+++|+|.+
T Consensus       110 mA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~  172 (176)
T 2a2n_A          110 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  172 (176)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             EEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEE
Confidence            9999999999999999999999999999999999999999999999998  689999999963

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.8e-41  Score=303.15  Aligned_cols=137  Identities=45%  Similarity=0.823  Sum_probs=129.1

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+|+.||||+|+||+||||+++ ++.|+.++||..|++|. ..++|.++|+|
T Consensus        23 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l   98 (166)
T 2x7k_A           23 IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGIL   98 (166)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCCTTSCCCSTTEE
T ss_pred             EEEEEccCCCCHHHHHHHHHH--hcCC-CCCCEEEEEECCCEEEcCCCCC-CCCCCCccCCCccccccccccCCCCCeEE
Confidence            345999999999999999999  6788 9999999999999999999985 78899999999999998 47899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+.+++++ ++|+++|+|.+
T Consensus        99 smAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~  161 (166)
T 2x7k_A           99 AMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             EECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEE
T ss_pred             EEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999976 79999999964

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-41  Score=315.30  Aligned_cols=148  Identities=52%  Similarity=0.889  Sum_probs=136.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCC-----ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  328 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~-----~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~  328 (403)
                      +..+.+.++|  +|+.+.+|++++||+.||+++.+.     .|+++.||||+|+|||||||++.++|.|+.++||.+|+|
T Consensus        67 si~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~d  146 (229)
T 1z81_A           67 NLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDD  146 (229)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCC
T ss_pred             eECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCcccc
Confidence            3344556666  999999999999999999876531     399999999999999999999888999999999999999


Q ss_pred             CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE--ecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443          329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQS--GKTSKKIVCFN  403 (403)
Q Consensus       329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi--eG~dvl~~i~~~~t~~--~~P~~~i~I~~  403 (403)
                      |++.++|+++|+|||||.+|++|+||||||+.++|+||++|+|||||+  +|||||++|+++++++  ++|+++|+|.+
T Consensus       147 E~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~  225 (229)
T 1z81_A          147 ENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE  225 (229)
T ss_dssp             CCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEE
T ss_pred             cccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEe
Confidence            999999999999999999999999999999999999999999999999  9999999999999986  89999999974

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.6e-41  Score=300.85  Aligned_cols=137  Identities=46%  Similarity=0.725  Sum_probs=128.5

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+|+.||||+|+||+||||+.+ ++.|+.++||.+|++|.. .++|+++|+|
T Consensus        12 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l   87 (161)
T 2ok3_A           12 IKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVV   87 (161)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCCTTCCSCSTTEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHh--hhcc-cCCCEEEEEECCCEEecCCCCC-CCCCCCcccCCccccccCcCcCcCCCeEE
Confidence            345999999999999999999  5688 9999999999999999999984 788999999999999985 6899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~--~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+++++++  ++|+++|+|.+
T Consensus        88 sma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~  151 (161)
T 2ok3_A           88 SMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD  151 (161)
T ss_dssp             EECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEE
T ss_pred             EEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999975  79999999863

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.4e-40  Score=299.26  Aligned_cols=146  Identities=69%  Similarity=1.175  Sum_probs=138.7

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+||+||||++.+++.|+.++|+..+++|...++|.+
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~  102 (173)
T 2r99_A           23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG  102 (173)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCcccCcccCC
Confidence            79999999999999999999999999988888899999999999999999999987899999999999999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +|+||||+++|++++|||||++.++++||++|+|||||++|||||++|+.+++..++|..+|.|..
T Consensus       103 ~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  168 (173)
T 2r99_A          103 PGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIAD  168 (173)
T ss_dssp             SSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999887788888876643

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.7e-40  Score=298.33  Aligned_cols=146  Identities=64%  Similarity=1.124  Sum_probs=138.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |+.|+|+||||++.||+||+||++||++++||+|+++.||||+|+||+||||++.+++.|+.++|+..+++|...++|.+
T Consensus        22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~l~h~~  101 (172)
T 2cmt_A           22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEG  101 (172)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCcccccccCcccCC
Confidence            79999999999999999999999999887888899999999999999999999887899999999999999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +|+||||+++|++++|||||++.++|+||++|+|||+|++|||||++|+.+++..++|..+|.|..
T Consensus       102 ~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  167 (172)
T 2cmt_A          102 FGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISR  167 (172)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEE
T ss_pred             ceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999888888888876643

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.6e-41  Score=314.82  Aligned_cols=161  Identities=27%  Similarity=0.421  Sum_probs=136.3

Q ss_pred             cCcCCCCceeEEEeEeecccccccccccCCCCCccccee--eeccccCCcchhhHHHhhcCC-----------C----C-
Q psy443          227 KTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI--VLRSDVVPKTAENFRALCTGE-----------K----G-  288 (403)
Q Consensus       227 ~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~-----------~----g-  288 (403)
                      +.|.......||      |++        ...+.+.++|  +|+.+.+|+|++||+.||+|+           .    | 
T Consensus         7 ~~p~~~~~p~v~------~di--------~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~   72 (234)
T 2ose_A            7 DLPNSGKNPRVY------MDI--------VLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI   72 (234)
T ss_dssp             SCCCCCSSCEEE------EEE--------EETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------
T ss_pred             ccCcCCCCCEEE------EEE--------EECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCC
Confidence            334444455677      665        3334556665  999999999999999999876           4    5 


Q ss_pred             -CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC-----CCCCCCCCCCCCCcEEEEec----CCCCCCcceEEEE
Q psy443          289 -FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFTLKHTGPGILSMAN----AGPNTNGSQFFIT  358 (403)
Q Consensus       289 -~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~-----~~~e~~~~~h~~~G~lsma~----~g~~s~gSqFfIt  358 (403)
                       |+|+|+.||||+|+|||||||+..++|.||.++||..     |+  ++.++|+++|+|||||    .+|++|+|||||+
T Consensus        73 ~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt  150 (234)
T 2ose_A           73 NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMIT  150 (234)
T ss_dssp             CCCSTTCBCCEEETTTEEEECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEE
T ss_pred             ceEECCcEEEEEECCCEEEcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEE
Confidence             7799999999999999999998777899999999987     76  5689999999999999    9999999999999


Q ss_pred             ecC------CCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          359 TVK------TAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       359 l~~------~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      +.+      +||||++|+|||+|++|||||++|+++++++ ++|+++|+|.+
T Consensus       151 ~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~  202 (234)
T 2ose_A          151 LDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGK  202 (234)
T ss_dssp             SSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEE
T ss_pred             ecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEE
Confidence            999      9999999999999999999999999999987 89999999974

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=8.2e-41  Score=303.55  Aligned_cols=137  Identities=43%  Similarity=0.701  Sum_probs=129.0

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+|+.||||+|+|||||||+++ ++.||.++||.+|++|. ..++|+++|+|
T Consensus        28 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l  103 (185)
T 2poe_A           28 LKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGIL  103 (185)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HTTT-TTTEEEEEECTTSEEEEEETTS-SSSCCCBTTBSCBCCCCCTTSCCCSTTEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCCEEEcCCCCC-CCCCCCccCCCcccccccCCCccCCCeEE
Confidence            344999999999999999999  6788 9999999999999999999984 78899999999999998 68999999999


Q ss_pred             EEecCC----CCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          342 SMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g----~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ||||.+    |++|+|||||+++++|+||++|+|||+|++|||||++|++++++. ++|+++|+|.+
T Consensus       104 smA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 2poe_A          104 SMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD  170 (185)
T ss_dssp             EECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEE
T ss_pred             EEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            999999    999999999999999999999999999999999999999999875 89999999963

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.7e-40  Score=296.71  Aligned_cols=146  Identities=76%  Similarity=1.232  Sum_probs=138.1

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+||+||||++.+++.|+.++++..+++|...++|.+
T Consensus        15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~   94 (165)
T 2z6w_A           15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVG   94 (165)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCcccccccCC
Confidence            58999999999999999999999999888999899999999999999999999887899999999999999998999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|++.++..++|..+|.|..
T Consensus        95 ~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  160 (165)
T 2z6w_A           95 PGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD  160 (165)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             CCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence            999999999999999999999999999999999999999999999999999887788888876643

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-40  Score=304.64  Aligned_cols=137  Identities=48%  Similarity=0.807  Sum_probs=129.1

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||+.||  +.|| |+|+.||||+|+|||||||+++ +|.|+.++||.+|++|. ..++|+++|+|
T Consensus        31 I~ieL~~~~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~f~iQgGd~~~-~g~Gg~si~g~~f~dE~~~~l~h~~~G~l  106 (197)
T 1zkc_A           31 LNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGRGIL  106 (197)
T ss_dssp             EEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTS-SSSCCCBTTBSCBCCCCCTTCCSCSTTEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCCEEEcCCCCC-CCCCCCccCCCccccccCcCcCCCCceEE
Confidence            345999999999999999999  6789 9999999999999999999985 78899999999999994 78899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~--~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+++++++  ++|+++|+|.+
T Consensus       107 sMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~  170 (197)
T 1zkc_A          107 SMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDA  170 (197)
T ss_dssp             EECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEE
T ss_pred             EEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999976  89999999963

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.4e-40  Score=296.26  Aligned_cols=146  Identities=43%  Similarity=0.689  Sum_probs=136.1

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      |.|+|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||+.+ ++.|+.++|+..+++|..
T Consensus         1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~   76 (161)
T 2ok3_A            1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYS   76 (161)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCC
T ss_pred             CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHh--hhcc-cCCCEEEEEECCCEEecCCCCC-CCCCCCcccCCccccccC
Confidence            67999999999999999999999999999999  7788 9999999999999999999985 888999999999999975


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC--Ccccceeee
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVL  267 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~--~~p~~~I~L  267 (403)
                       .++|+++|+||||+++|++++|||||++.++++||++|+|||||++||+||++|+++++..  ++|..+|.|
T Consensus        77 ~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I  149 (161)
T 2ok3_A           77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI  149 (161)
T ss_dssp             TTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBE
T ss_pred             cCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEE
Confidence             6889899999999999999999999999999999999999999999999999999988654  677776644

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-40  Score=304.76  Aligned_cols=137  Identities=47%  Similarity=0.770  Sum_probs=128.7

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||+.||  +.|| |+|+.||||+|+|||||||+++ +|.||.++||.+|++|. ..++|+++|+|
T Consensus        50 I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRVi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l  125 (196)
T 2b71_A           50 FEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGIL  125 (196)
T ss_dssp             EEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCCCTTCCCCSTTEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCEEEEEeCCcEEEcCCCCC-CCCCCCccCCCcccccccCCcCcCCCeEE
Confidence            345999999999999999999  6788 9999999999999999999985 78899999999999995 57899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||||++|||||++|++++++. ++|+++|+|.+
T Consensus       126 sMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  188 (196)
T 2b71_A          126 SMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  188 (196)
T ss_dssp             EECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             EEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999975 89999999963

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.5e-40  Score=295.42  Aligned_cols=148  Identities=43%  Similarity=0.691  Sum_probs=138.0

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|+++|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||+.. ++.|+.++|+..+++|..
T Consensus         6 ~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~   81 (160)
T 2fu0_A            6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFF   81 (160)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCB
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHh--ccCc-cCCCEEEEEECCCEEEeCCcCC-CCCCCCcccCCCcccccc
Confidence            67999999999999999999999999999999  7889 9999999999999999999976 789999999999999987


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeecc
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLRS  269 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~~  269 (403)
                       .++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++++. .++|..+|.|..
T Consensus        82 ~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  155 (160)
T 2fu0_A           82 DHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  155 (160)
T ss_dssp             TTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             CCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence             689998999999999999999999999999999999999999999999999999998865 578887775543

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=4.5e-40  Score=293.88  Aligned_cols=146  Identities=66%  Similarity=1.073  Sum_probs=139.0

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+||+||||+..+++.|+.++++..+++|...++|.+
T Consensus        14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~~~l~h~~   93 (164)
T 3pmp_A           14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTK   93 (164)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCccccccccccCcCC
Confidence            79999999999999999999999999888999899999999999999999998777999999999999999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +|+||||+++|++++|||||++.++|+||++|+|||||++||+||++|+++++..++|..+|.|..
T Consensus        94 ~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v~I~~  159 (164)
T 3pmp_A           94 PGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITD  159 (164)
T ss_dssp             TTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcccCEEEEe
Confidence            999999999999999999999999999999999999999999999999999988888888876644

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.8e-40  Score=295.41  Aligned_cols=148  Identities=42%  Similarity=0.721  Sum_probs=137.9

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      +.|.|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||++. ++.|+.++|+..+++|. 
T Consensus        12 ~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~   87 (166)
T 2x7k_A           12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH   87 (166)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCC
T ss_pred             CEEEEEeCCCcEEEEEccCCCCHHHHHHHHHH--hcCC-CCCCEEEEEECCCEEEcCCCCC-CCCCCCccCCCccccccc
Confidence            78999999999999999999999999999999  7889 9999999999999999999986 88999999999999998 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC-Ccccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~-~~p~~~I~L~~  269 (403)
                      ..++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+.+++.. ++|..+|.|..
T Consensus        88 ~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~  161 (166)
T 2x7k_A           88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             TTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEE
T ss_pred             cccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            47899889999999999999999999999999999999999999999999999999998654 67877775543

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=4e-40  Score=295.57  Aligned_cols=144  Identities=60%  Similarity=0.956  Sum_probs=135.5

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+||+||||+..+++.|+.++|+..+++|+..++|. 
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~-  101 (172)
T 2haq_A           23 EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-  101 (172)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCCCCSCCC-
T ss_pred             EecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcCCCcccC-
Confidence            6999999999999999999999999999999989999999999999999999777789999999999999998899999 


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC-Ccccceeeec
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVLR  268 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~-~~p~~~I~L~  268 (403)
                      +|+||||+++|++++|||||++.++|+||++|+|||||++||+||++|+++++.. ++|..+|.|.
T Consensus       102 ~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~  167 (172)
T 2haq_A          102 VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIV  167 (172)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEE
T ss_pred             ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999998754 4888877654

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=4.8e-40  Score=295.93  Aligned_cols=146  Identities=70%  Similarity=1.081  Sum_probs=136.5

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc-------ccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGF-------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~-------~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      |++|+|+||||++.||+||+||++||++++|+       +|+++.||||+|+||+||||++.+++.|+.++|+..+++|.
T Consensus        15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE~   94 (173)
T 2igv_A           15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDEN   94 (173)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCcc
Confidence            46999999999999999999999999887773       29999999999999999999987789999999999999999


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      ..++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+.+++..++|..+|.|..
T Consensus        95 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~  167 (173)
T 2igv_A           95 FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIAD  167 (173)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             cccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999887788888886643

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=4e-40  Score=300.10  Aligned_cols=135  Identities=45%  Similarity=0.722  Sum_probs=123.8

Q ss_pred             eeeeccccCCcchhhHHHhhcCCC-------------CCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC
Q psy443          264 KIVLRSDVVPKTAENFRALCTGEK-------------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  330 (403)
Q Consensus       264 ~I~L~~d~aP~t~enF~~L~~g~~-------------g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~  330 (403)
                      .|+|+.+.+|++++||+.||+|++             ++ |+|+.||||+|+|||||||+.+ +|.|+   +|.+|++|.
T Consensus        36 ~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~g-~G~gg---~g~~f~dE~  110 (191)
T 1w74_A           36 KIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTG-TGRGG---PGYKFADEF  110 (191)
T ss_dssp             EEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTS-SSSCC---SSCCBCCCC
T ss_pred             EEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCCC-CCCCC---CCCcccccc
Confidence            449999999999999999998743             56 9999999999999999999864 66666   588999994


Q ss_pred             -CCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEe--cHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          331 -FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       331 -~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vie--G~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                       ..++|+++|+|||||.+|++|+|||||++.++|+||++|+|||||++  |||||++|++++++. ++|+++|+|.+
T Consensus       111 ~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  187 (191)
T 1w74_A          111 HPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES  187 (191)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEE
T ss_pred             ccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence             68999999999999999999999999999999999999999999999  999999999999965 89999999974

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=8.7e-40  Score=297.54  Aligned_cols=146  Identities=62%  Similarity=0.977  Sum_probs=136.2

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+|||||||+..+++.|+.++|+..+++|...++|++
T Consensus        27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~  106 (188)
T 3ich_A           27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG  106 (188)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccccCcccCC
Confidence            78999999999999999999999999988898899999999999999999997777899999999999999998999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC-Ccccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~-~~p~~~I~L~~  269 (403)
                      +|+||||++++++++|||||++.++++||++|+|||||++||+||++|+.+++.. ++|..+|.|..
T Consensus       107 ~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~  173 (188)
T 3ich_A          107 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIAD  173 (188)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             CeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999998754 47777775543

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3.8e-40  Score=302.34  Aligned_cols=137  Identities=45%  Similarity=0.823  Sum_probs=128.7

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.+| |+++.||||+|+|||||||+++ ++.++.++|+.+|++|. ..++|.++|+|
T Consensus        23 I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~F~iQgGd~~~-~g~gg~si~g~~f~dE~~~~l~h~~~G~l   98 (203)
T 2k7n_A           23 IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGIL   98 (203)
T ss_dssp             EEEEECTTTCTTHHHHHHHHH--HHTC-GGGCEEEEEETTTEEEEECSSS-SSSCCCTTSCSCBCCCCCCSSCCCSSCEE
T ss_pred             EEEEEccCCCcHHHHHHHHHH--hcCc-cCCCEEEEEeCCcEEEcCCCCC-CCCCCCccCCCcccccccccccCCCCeEE
Confidence            345999999999999999999  6788 9999999999999999999985 78889999999999998 47899999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      ||||.+||+|+|||||++.++|+||++|+|||||++|||||++|+.+++++ ++|+++|+|.+
T Consensus        99 sMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~  161 (203)
T 2k7n_A           99 AMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (203)
T ss_dssp             EEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEE
T ss_pred             EEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999975 79999999863

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=7.7e-40  Score=294.93  Aligned_cols=148  Identities=45%  Similarity=0.738  Sum_probs=138.2

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|+++|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||+.. ++.|+.++|+..+++|..
T Consensus        22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~   97 (176)
T 2a2n_A           22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFH   97 (176)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCC
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHh--hcCc-cCCCEEEEEECCcEEEccCCCC-CCCCCCcccCCccccccc
Confidence            67999999999999999999999999999999  7889 9999999999999999999976 789999999999999987


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC--CCcccceeeecc
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVLRS  269 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~--~~~p~~~I~L~~  269 (403)
                       .++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++++.  .++|..+|.|..
T Consensus        98 ~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~  172 (176)
T 2a2n_A           98 STLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  172 (176)
T ss_dssp             TTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             cccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEE
Confidence             689999999999999999999999999999999999999999999999999999998875  678887776543

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.2e-39  Score=294.31  Aligned_cols=154  Identities=49%  Similarity=0.819  Sum_probs=139.5

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCC---------cccCCCEEEeeeCCeEEEeCcC
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKG---------FGFKDSTFHRVIPNFMCQGGDF  176 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g---------~~Y~~~~f~Rv~~~~~iqgGd~  176 (403)
                      +|.|..+..         |++|+|+||||++.||+||+||++||+++++         | |+++.||||+|+|||||||+
T Consensus         9 v~~di~i~~---------~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~   78 (177)
T 1a58_A            9 VFLDVTIDG---------NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDF   78 (177)
T ss_dssp             EEEEEEETT---------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCC
T ss_pred             EEEEEEECC---------EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCc
Confidence            556655554         5899999999999999999999999986432         6 99999999999999999999


Q ss_pred             CCCCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC
Q psy443          177 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS  256 (403)
Q Consensus       177 ~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t  256 (403)
                      +.+++.|+.++|+..+++|...++|+++|+||||+++|++++|||||++.++|+||++|+|||+|++|||||++|+.+++
T Consensus        79 ~~~~g~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~  158 (177)
T 1a58_A           79 TKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT  158 (177)
T ss_dssp             SSSSSSCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCCCCCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCC
Confidence            87789999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C-CCcccceeeecc
Q psy443          257 Q-SGKTSKKIVLRS  269 (403)
Q Consensus       257 ~-~~~p~~~I~L~~  269 (403)
                      . .++|..+|.|..
T Consensus       159 ~~~~~P~~~v~I~~  172 (177)
T 1a58_A          159 NSKNRPLADVVILN  172 (177)
T ss_dssp             CTTSCBSSCEEEEE
T ss_pred             CCCCcCCCCeEEEE
Confidence            5 468888876543

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.5e-39  Score=295.37  Aligned_cols=146  Identities=62%  Similarity=1.015  Sum_probs=137.0

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcc-------cCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~-------Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      |+.|+|+||||++.||+||+||++||++++||+       |+++.||||+|+|||||||++.+++.|+.++|+..+++|.
T Consensus        31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~  110 (186)
T 2poy_A           31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDEN  110 (186)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-CBCCCC
T ss_pred             EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCcccCcc
Confidence            479999999999999999999999998888885       9999999999999999999987789999999999999999


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      ..++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+.+++..++|..+|.|..
T Consensus       111 ~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~  183 (186)
T 2poy_A          111 FVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITA  183 (186)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             cccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999988888888886643

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=294.60  Aligned_cols=152  Identities=68%  Similarity=1.090  Sum_probs=142.4

Q ss_pred             eeeEEEEe-----eeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcc
Q psy443          118 LANAIHWY-----RKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  192 (403)
Q Consensus       118 ~~v~~~T~-----~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~  192 (403)
                      ..|.|+|+     +|+|+||||++.||+||+||++||+++.|++|+++.||||+|+||+||||+..+++.|+.++++..+
T Consensus        23 p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~  102 (184)
T 3rdd_A           23 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF  102 (184)
T ss_dssp             CEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             CEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcc
Confidence            45666665     9999999999999999999999999888888999999999999999999988889999999999999


Q ss_pred             cCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       193 ~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      ++|...++|.++|+||||+++|++++|||||++.++++||++|+|||||++|||||++|+++++..++|..+|.|..
T Consensus       103 ~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~  179 (184)
T 3rdd_A          103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD  179 (184)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             cCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999988888988886654

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.2e-39  Score=292.52  Aligned_cols=144  Identities=59%  Similarity=1.052  Sum_probs=134.9

Q ss_pred             eeeeEEEEEcCCCChhhHHhHHHhhcCCCCcc-------cCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          125 YRKGFKGRLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       125 ~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~-------Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ++|+|+||||++.||+||+||++||+++ ||+       |+++.||||+|+||+||||++.+++.|+.++|+..+++|..
T Consensus        16 ~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~   94 (170)
T 1qng_A           16 NAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENF   94 (170)
T ss_dssp             EEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCC
T ss_pred             eceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccccc
Confidence            6999999999999999999999999754 664       99999999999999999999877899999999999999999


Q ss_pred             ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      .++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++++..++|..+|.|..
T Consensus        95 ~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~  166 (170)
T 1qng_A           95 NMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             ccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCeEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987788888876643

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.5e-39  Score=297.28  Aligned_cols=147  Identities=46%  Similarity=0.761  Sum_probs=137.2

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      ..|+|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+|||||||+++ ++.|+.++||..+++|. 
T Consensus        20 ~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~f~iQgGd~~~-~g~Gg~si~g~~f~dE~~   95 (197)
T 1zkc_A           20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKPFKDEFR   95 (197)
T ss_dssp             EEEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTS-SSSCCCBTTBSCBCCCCC
T ss_pred             cEEEEEeCCccEEEEEcCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCCEEEcCCCCC-CCCCCCccCCCccccccC
Confidence            78999999999999999999999999999999  7899 9999999999999999999986 88999999999999994 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC--Ccccceeeec
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVLR  268 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~--~~p~~~I~L~  268 (403)
                      ..++|.++|+||||+++|++++|||||++.++++||++|+|||+|++|||||++|+.+++..  ++|..+|.|.
T Consensus        96 ~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~  169 (197)
T 1zkc_A           96 PNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRID  169 (197)
T ss_dssp             TTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEE
T ss_pred             cCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEE
Confidence            67899899999999999999999999999999999999999999999999999999988754  6777776443

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=1.8e-39  Score=293.56  Aligned_cols=153  Identities=48%  Similarity=0.760  Sum_probs=140.2

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCC---------CCcccCCCEEEeeeCCeEEEeCcC
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGE---------KGFGFKDSTFHRVIPNFMCQGGDF  176 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~---------~g~~Y~~~~f~Rv~~~~~iqgGd~  176 (403)
                      +|.|..+..         |++|+|+||||++.||+||+||++||+|+         .+| |+++.||||+|+|||||||+
T Consensus        12 vf~di~i~~---------t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~   81 (179)
T 2wfi_A           12 CFFDIAINN---------QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDF   81 (179)
T ss_dssp             EEEEEEETT---------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCT
T ss_pred             EEEEEEECC---------ccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccc
Confidence            666766655         69999999999999999999999999765         446 99999999999999999999


Q ss_pred             CCCCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC
Q psy443          177 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS  256 (403)
Q Consensus       177 ~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t  256 (403)
                      +.+++.|+.++|+..+++|...++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++++
T Consensus        82 ~~~~g~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t  161 (179)
T 2wfi_A           82 SEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKT  161 (179)
T ss_dssp             TTSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCB
T ss_pred             cCCCCCCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCC
Confidence            87789999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             C-CCcccceeeec
Q psy443          257 Q-SGKTSKKIVLR  268 (403)
Q Consensus       257 ~-~~~p~~~I~L~  268 (403)
                      . .++|..+|.|.
T Consensus       162 ~~~~~P~~~v~I~  174 (179)
T 2wfi_A          162 DAASKPFAEVRIL  174 (179)
T ss_dssp             CTTSCBSSCEEEE
T ss_pred             CCCCCCCCCeEEE
Confidence            4 46888887654

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=7.8e-40  Score=301.15  Aligned_cols=137  Identities=40%  Similarity=0.637  Sum_probs=122.8

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeC-----cCCCCCCCCCcccC-------CCCCCCCC
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGG-----DFTNHNGTGGKSIY-------GNKFEDEN  330 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgG-----d~~~~~g~gg~~~~-------g~~~~~e~  330 (403)
                      ..|+|+.+.+|+|++||+.||  +.|| |+|+.||||+|+||||||     |+++ +|.||.++|       |.+|++|.
T Consensus        18 i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~~-~g~gg~si~~~~~~~~g~~f~dE~   93 (201)
T 3bo7_A           18 LNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSK-KKEVQQSPRSISGFPGGAPFEDEF   93 (201)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCCSSTTCCCBCCCC
T ss_pred             EEEEEcCCCCcHHHHHHHHHH--hcCc-cCCCEEEEeeCCCEEEcCcccccCCCC-CCCCCccccccccccCCCcccCcc
Confidence            345999999999999999999  6788 999999999999999999     9884 788999999       89999995


Q ss_pred             -CCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          331 -FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       331 -~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                       ..++|+++|+|||||.+|++|+|||||+++++|+||++|+|||+|++|||||++|+.++++. ++|.++|+|.+
T Consensus        94 ~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  168 (201)
T 3bo7_A           94 DNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE  168 (201)
T ss_dssp             CTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEE
T ss_pred             cCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence             68899999999999999999999999999999999999999999999999999999999976 89999999863

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.3e-39  Score=295.69  Aligned_cols=147  Identities=41%  Similarity=0.654  Sum_probs=136.8

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      +.|+|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||++. ++.|+.++|+..+++|. 
T Consensus        17 ~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~   92 (185)
T 2poe_A           17 QGVRIITNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIY   92 (185)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTEEEEEECTTSEEEEEETTS-SSSCCCBTTBSCBCCCCC
T ss_pred             eEEEEEecCccEEEEEeCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCCEEEcCCCCC-CCCCCCccCCCccccccc
Confidence            78999999999999999999999999999999  7889 9999999999999999999985 88999999999999997 


Q ss_pred             CccCCCccceeeecccC----CCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeec
Q psy443          197 FTLKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLR  268 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~----~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~  268 (403)
                      ..++|.++|+||||+++    |++++|||||++.++|+||++|+|||||++||+||++|+++++. .++|..+|.|.
T Consensus        93 ~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~  169 (185)
T 2poe_A           93 PELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIK  169 (185)
T ss_dssp             TTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEE
T ss_pred             CCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEE
Confidence            67899899999999999    99999999999999999999999999999999999999998864 46777776443

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.8e-39  Score=296.74  Aligned_cols=148  Identities=45%  Similarity=0.693  Sum_probs=137.6

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      +.|.|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+||||++. ++.|+.++||..+++|. 
T Consensus        39 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRVi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~  114 (196)
T 2b71_A           39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEIN  114 (196)
T ss_dssp             CEEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCCC
T ss_pred             cEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCEEEEEeCCcEEEcCCCCC-CCCCCCccCCCccccccc
Confidence            67999999999999999999999999999999  7899 9999999999999999999985 88999999999999995 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~~  269 (403)
                      ..++|+++|+||||+++|++++|||||++.++|+||++|+|||||++||+||++|+++++. .++|..+|.|..
T Consensus       115 ~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  188 (196)
T 2b71_A          115 KELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  188 (196)
T ss_dssp             TTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             CCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEE
Confidence            5789989999999999999999999999999999999999999999999999999998864 468877775543

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.9e-40  Score=296.96  Aligned_cols=159  Identities=55%  Similarity=0.899  Sum_probs=114.6

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCc
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK  185 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~  185 (403)
                      +|.|..+.+.    -.+.|++|+|+||||++.||+||+||++||+|++|++|+++.||||+|+||+||||+..+++.|+.
T Consensus         5 vf~di~i~~~----~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~   80 (172)
T 2c3b_A            5 VFFDVEYAPV----GTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR   80 (172)
T ss_dssp             EEEEEEECCT----TCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------
T ss_pred             EEEEEEeCCC----CceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCc
Confidence            5666666522    124589999999999999999999999999888888899999999999999999996666899999


Q ss_pred             ccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee--cccccccccccCCCCC--cc
Q psy443          186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KT  261 (403)
Q Consensus       186 ~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie--G~dvl~~i~~~~t~~~--~p  261 (403)
                      ++|+..+++|...++|+++|+||||+++|++++|||||++.++|+||++|+|||||++  ||+||++|+++++..+  +|
T Consensus        81 si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P  160 (172)
T 2c3b_A           81 SIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRS  160 (172)
T ss_dssp             ------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCS
T ss_pred             ccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccC
Confidence            9999999999889999999999999999999999999999999999999999999999  9999999999987655  78


Q ss_pred             cceeeec
Q psy443          262 SKKIVLR  268 (403)
Q Consensus       262 ~~~I~L~  268 (403)
                      ..+|.|.
T Consensus       161 ~~~v~I~  167 (172)
T 2c3b_A          161 NTRPKIV  167 (172)
T ss_dssp             SSCCEEE
T ss_pred             CCCeEEE
Confidence            7777654

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-39  Score=294.27  Aligned_cols=156  Identities=46%  Similarity=0.726  Sum_probs=141.4

Q ss_pred             cccccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCC---------CCcccCCCEEEeeeCCeEEEeC
Q psy443          104 KDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGE---------KGFGFKDSTFHRVIPNFMCQGG  174 (403)
Q Consensus       104 ~~~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~---------~g~~Y~~~~f~Rv~~~~~iqgG  174 (403)
                      ..+|.|..+..         |++|+|+||||++.||+||+||++||+|+         .+| |+++.||||+|+||||||
T Consensus        20 ~~vf~di~i~~---------t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgG   89 (192)
T 2he9_A           20 PQCHFDIEINR---------EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGG   89 (192)
T ss_dssp             CEEEEEEEETT---------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEEC
T ss_pred             CeEEEEEEECC---------EecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcC
Confidence            34667766655         69999999999999999999999999764         456 999999999999999999


Q ss_pred             cCCCCCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeeccccccccccc
Q psy443          175 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM  254 (403)
Q Consensus       175 d~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~  254 (403)
                      |++.+++.|+.++|+..+++|...++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++
T Consensus        90 d~~~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~  169 (192)
T 2he9_A           90 DFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENL  169 (192)
T ss_dssp             CTTTSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred             cccCCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcC
Confidence            99877899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC-CCcccceeeecc
Q psy443          255 GSQ-SGKTSKKIVLRS  269 (403)
Q Consensus       255 ~t~-~~~p~~~I~L~~  269 (403)
                      ++. .++|..+|.|..
T Consensus       170 ~t~~~~~P~~~v~I~~  185 (192)
T 2he9_A          170 KTDAASRPYADVRVID  185 (192)
T ss_dssp             CBCTTSCBSSCEEEEE
T ss_pred             CcCCCCCCcCCeEEEE
Confidence            864 478888876543

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.9e-39  Score=292.76  Aligned_cols=146  Identities=62%  Similarity=1.016  Sum_probs=138.1

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||++|+||++||++++|++|+++.||||+|+||+||||+..+++.|+.++++..+++|...++|++
T Consensus        39 t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~  118 (193)
T 3k2c_A           39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTK  118 (193)
T ss_dssp             EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCCCSCCCS
T ss_pred             EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCcccccccccccCC
Confidence            78999999999999999999999999887888899999999999999999998888999999999999999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCccc--ceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTS--KKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~--~~I~L~~  269 (403)
                      +|+||||++++++++|||||++.++++||++|+|||||++|||||++|+++++..++|.  .+|.|..
T Consensus       119 ~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~  186 (193)
T 3k2c_A          119 EGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRD  186 (193)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEE
T ss_pred             CcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEE
Confidence            99999999999999999999999999999999999999999999999999998878888  7775543

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=7e-39  Score=291.39  Aligned_cols=146  Identities=61%  Similarity=0.970  Sum_probs=136.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||+||+||++||++++|++|+++.||||+|+||+||||++.+++.|+.++++..+++|...++|++
T Consensus        24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de~~~~~h~~  103 (185)
T 4fru_A           24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG  103 (185)
T ss_dssp             EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCccccccCcCC
Confidence            46999999999999999999999999887784499999999999999999999988999999999999999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~~  269 (403)
                      +|+||||++++++++|||||++.++++||++|+|||||++||+||++|+++++. .++|..+|.|..
T Consensus       104 ~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 4fru_A          104 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIAD  170 (185)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             CeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999875 478888875544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=3.6e-39  Score=322.86  Aligned_cols=148  Identities=61%  Similarity=0.958  Sum_probs=138.2

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCC--------ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK  325 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~--------~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~  325 (403)
                      ++++++.|+|  +|+.+.+|+||+||+.||++++|+        .|+|+.||||+|+|||||||++.++|+||.++||.+
T Consensus        23 ~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~~~~~~  102 (370)
T 1ihg_A           23 DIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEK  102 (370)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             EECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCCCCCCC
Confidence            4556677777  999999999999999999886542        399999999999999999999988999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      |++|++.++|+++|+|||||.|||+||||||||+.++||||++|+|||+|++||+||++|+.+++..++|..+|+|.+
T Consensus       103 ~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~~v~I~~  180 (370)
T 1ihg_A          103 FEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAE  180 (370)
T ss_dssp             BCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEE
T ss_pred             cCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccceeEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999998899999999963

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=7.8e-39  Score=294.47  Aligned_cols=146  Identities=38%  Similarity=0.575  Sum_probs=129.5

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeC-----cCCCCCCCCCcccC----
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGG-----DFTNHNGTGGKSIY----  188 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgG-----d~~~~~g~g~~~~~----  188 (403)
                      ..|+|+|+.|+|+||||++.||+||+||++||  +.|| |+++.||||+|+||+|||     |+++ ++.|+.++|    
T Consensus         7 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~~-~g~gg~si~~~~~   82 (201)
T 3bo7_A            7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSK-KKEVQQSPRSISG   82 (201)
T ss_dssp             EEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCCS
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCCEEEEeeCCCEEEcCcccccCCCC-CCCCCcccccccc
Confidence            77999999999999999999999999999999  7899 999999999999999999     9985 888999988    


Q ss_pred             ---CCcccCCC-CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC-Ccccc
Q psy443          189 ---GNKFEDEN-FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSK  263 (403)
Q Consensus       189 ---~~~~~~e~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~-~~p~~  263 (403)
                         +..+++|. ..++|+++|+||||+++|++++|||||++.++++||++|+|||+|++||+||++|+.+++.. ++|..
T Consensus        83 ~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~  162 (201)
T 3bo7_A           83 FPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLK  162 (201)
T ss_dssp             STTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSS
T ss_pred             ccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCC
Confidence               88999994 67889899999999999999999999999999999999999999999999999999988653 67776


Q ss_pred             eeee
Q psy443          264 KIVL  267 (403)
Q Consensus       264 ~I~L  267 (403)
                      +|.|
T Consensus       163 ~i~I  166 (201)
T 3bo7_A          163 PPKV  166 (201)
T ss_dssp             CCBE
T ss_pred             CeEE
Confidence            6644

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=295.20  Aligned_cols=148  Identities=41%  Similarity=0.716  Sum_probs=137.0

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      +.|.|+|++|+|+||||++.||++|+||++||  +.|| |+++.||||+|+|||||||++. ++.|+.++|+..+++|. 
T Consensus        12 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~F~iQgGd~~~-~g~gg~si~g~~f~dE~~   87 (203)
T 2k7n_A           12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH   87 (203)
T ss_dssp             SEEEEEESSCEEEEEECTTTCTTHHHHHHHHH--HHTC-GGGCEEEEEETTTEEEEECSSS-SSSCCCTTSCSCBCCCCC
T ss_pred             CEEEEEeCCCcEEEEEccCCCcHHHHHHHHHH--hcCc-cCCCEEEEEeCCcEEEcCCCCC-CCCCCCccCCCccccccc
Confidence            78999999999999999999999999999999  7889 9999999999999999999986 88899999999999997 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~~  269 (403)
                      ..++|.++|+|+||+++|++++|||||++.++++||++|+|||||++|||||++|+.+++. .++|..+|.|..
T Consensus        88 ~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~  161 (203)
T 2k7n_A           88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (203)
T ss_dssp             CSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEE
T ss_pred             ccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            4789988999999999999999999999999999999999999999999999999998864 357777665544

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-38  Score=290.24  Aligned_cols=148  Identities=43%  Similarity=0.682  Sum_probs=133.7

Q ss_pred             ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCC-------------CcccCCCEEEeeeCCeEEEeCcCCCCCCCC
Q psy443          117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEK-------------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTG  183 (403)
Q Consensus       117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~-------------g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g  183 (403)
                      .+.|+|+|++|+|+||||++.||+||+||++||+|++             +| |+++.||||+|+|||||||+.. ++.|
T Consensus        23 ~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~g-~G~g  100 (191)
T 1w74_A           23 TATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTG-TGRG  100 (191)
T ss_dssp             SEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTS-SSSC
T ss_pred             CeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCCC-CCCC
Confidence            3789999999999999999999999999999997643             56 9999999999999999999865 6777


Q ss_pred             CcccCCCcccCCC-CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee--cccccccccccCCC-CC
Q psy443          184 GKSIYGNKFEDEN-FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQ-SG  259 (403)
Q Consensus       184 ~~~~~~~~~~~e~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie--G~dvl~~i~~~~t~-~~  259 (403)
                      +   ++..+++|. ..++|.++|+||||+++|++++|||||++.++|+||++|+|||||++  ||+||++|+++++. .+
T Consensus       101 g---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~  177 (191)
T 1w74_A          101 G---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGND  177 (191)
T ss_dssp             C---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTS
T ss_pred             C---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCC
Confidence            6   478899994 68899999999999999999999999999999999999999999999  99999999999874 47


Q ss_pred             cccceeeecc
Q psy443          260 KTSKKIVLRS  269 (403)
Q Consensus       260 ~p~~~I~L~~  269 (403)
                      +|..+|.|..
T Consensus       178 ~P~~~v~I~~  187 (191)
T 1w74_A          178 RPTDPVVIES  187 (191)
T ss_dssp             CBSSCCEEEE
T ss_pred             CcCCCeEEEE
Confidence            8888776543

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1e-38  Score=288.07  Aligned_cols=146  Identities=55%  Similarity=0.908  Sum_probs=134.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc-----ccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  198 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~-----~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~  198 (403)
                      |+.|+|+||||++.||+||+||++||++..++     +|+++.||||+|+||+||||++.+++.|+.++|+..+++|...
T Consensus        22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~  101 (177)
T 1mzw_A           22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK  101 (177)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCCCC
T ss_pred             eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCcccc
Confidence            58999999999999999999999999654421     3999999999999999999998778999999999999999999


Q ss_pred             cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      ++|.++|+||||+++|++++|||||++.++|+||++|+|||||++|||||++|+++++ ..++|..+|.|..
T Consensus       102 l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  173 (177)
T 1mzw_A          102 LRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQ  173 (177)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             cccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999987 5678888876543

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=4.8e-39  Score=287.22  Aligned_cols=135  Identities=30%  Similarity=0.519  Sum_probs=121.1

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  342 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls  342 (403)
                      ..|+|+.+.+|+|++||++||  +.|| |+|+.||||+|+|||||||++.+.   |.++++.+|++|.....++.+|+||
T Consensus        11 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~l~~~~G~ls   84 (164)
T 1lop_A           11 IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNGLKNTRGTLA   84 (164)
T ss_dssp             EEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSSCCCCTTEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccccccccccCccEEE
Confidence            345999999999999999999  6889 999999999999999999997533   4667899999998754444699999


Q ss_pred             EecC-CCCCCcceEEEEecCCCCCCCC--------ceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443          343 MANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN  403 (403)
Q Consensus       343 ma~~-g~~s~gSqFfItl~~~~~Ld~~--------~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~  403 (403)
                      |||. +|++|+|||||++.++|+||++        |+|||+|++|||||++|+++++++     ++|+++|+|.+
T Consensus        85 mA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~  159 (164)
T 1lop_A           85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES  159 (164)
T ss_dssp             ECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEE
T ss_pred             EeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEEE
Confidence            9974 7999999999999999999998        999999999999999999999964     79999999964

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.4e-38  Score=284.70  Aligned_cols=135  Identities=33%  Similarity=0.564  Sum_probs=120.9

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  342 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls  342 (403)
                      ..|+|+.+.+|+|++||++||  +.|| |+|+.||||+|+|||||||++...+   ...++.+|++|.....|+.+|+||
T Consensus        16 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g~~~~dE~~~~l~~~~G~ls   89 (166)
T 1v9t_A           16 IELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNTRGTIA   89 (166)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCC---BCCCCCCBCCCGGGSCCCCTTEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCcEEEcCCcCcCCC---CCCCCCcccccccccccCCceEEE
Confidence            345999999999999999999  7889 9999999999999999999976432   234678899998776677899999


Q ss_pred             EecC-CCCCCcceEEEEecCCCCCCCC-----ceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443          343 MANA-GPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN  403 (403)
Q Consensus       343 ma~~-g~~s~gSqFfItl~~~~~Ld~~-----~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~  403 (403)
                      |||. +||+|+|||||++.++|+||++     |+|||+|++|||||++|+++++++     ++|+++|+|.+
T Consensus        90 mA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~~  161 (166)
T 1v9t_A           90 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS  161 (166)
T ss_dssp             ECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEE
T ss_pred             EeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEEE
Confidence            9997 6999999999999999999998     999999999999999999999874     79999999863

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=4.8e-38  Score=285.20  Aligned_cols=136  Identities=39%  Similarity=0.686  Sum_probs=125.3

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL  341 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l  341 (403)
                      ..|+|+.+.+|++++||++||  +.|| |+|+.||||+|+|||||||+++ ++.||.++||.+|++|.. .++|+++|+|
T Consensus        36 I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~~~l~h~~~G~l  111 (185)
T 2hq6_A           36 IDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLV  111 (185)
T ss_dssp             EEEEEBTTTCHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCBTTBCSCSSSEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEECCCEEEcCCCCC-CCCCCCcccCCccccccccCcccCCCeEE
Confidence            345999999999999999999  6788 9999999999999999999974 788999999999999986 6889999999


Q ss_pred             EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHH--HHHHhCCCC-CCCccccEEEeC
Q psy443          342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV--KKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl--~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      ||||.+|++|+|||||+++++|+||++|+|||||+ ||+++  ++|+.++++ +++|+++|+|.+
T Consensus       112 sMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~  175 (185)
T 2hq6_A          112 AMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKS  175 (185)
T ss_dssp             EECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEE
T ss_pred             EEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEE
Confidence            99999999999999999999999999999999999 88875  688888885 589999999963

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=3.6e-38  Score=282.49  Aligned_cols=135  Identities=31%  Similarity=0.486  Sum_probs=120.3

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS  342 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls  342 (403)
                      ..|+|+.+.+|++++||++||  +.+| |+++.||||+|+|||||||++...   +...++.++++|.....++.+|+||
T Consensus        15 i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~~~~~~~E~~~~l~~~~G~ls   88 (167)
T 3s6m_A           15 IKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFEPGL---KQKPTDAPIANEANNGLKNDTYTIA   88 (167)
T ss_dssp             EEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCGGGCCCCCTTEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--hhcc-cCCCEeEEecCCcEEEeccccCCC---CCCCCCCccCCcccccccCCccEEE
Confidence            445999999999999999999  6788 999999999999999999997633   2345678899997655556899999


Q ss_pred             Eec-CCCCCCcceEEEEecCCCCCCCC--------ceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443          343 MAN-AGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN  403 (403)
Q Consensus       343 ma~-~g~~s~gSqFfItl~~~~~Ld~~--------~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~  403 (403)
                      ||| .+|++|+|||||++.++++||++        |+|||+|++|||||++|+++++++     ++|+++|+|.+
T Consensus        89 mA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~  163 (167)
T 3s6m_A           89 MARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK  163 (167)
T ss_dssp             ECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCEEEE
T ss_pred             EecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeEEEE
Confidence            999 68999999999999999999998        999999999999999999999975     79999999963

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=4.3e-38  Score=281.06  Aligned_cols=144  Identities=28%  Similarity=0.500  Sum_probs=126.4

Q ss_pred             eeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443          119 ANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  198 (403)
Q Consensus       119 ~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~  198 (403)
                      .|+|+|++|+|+||||++.||+||+||++||  ++|| |+++.||||+|+|||||||++.+.   +.+.++.++++|...
T Consensus         1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~   74 (164)
T 1lop_A            1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANN   74 (164)
T ss_dssp             CEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCS
T ss_pred             CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccccc
Confidence            3789999999999999999999999999999  7899 999999999999999999997533   345678899999865


Q ss_pred             cCCCccceeeeccc-CCCCCcceeEEEeccCcCCCCc--------eeEEEeEeecccccccccccCCCC-----Ccccce
Q psy443          199 LKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKK  264 (403)
Q Consensus       199 ~~h~~~G~ls~a~~-~~~~~~SqFfI~l~~~~~Ld~~--------~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~  264 (403)
                      ..++.+|+||||++ +|++++|||||++.++++||++        |+|||+|++|||||++|+++++..     ++|..+
T Consensus        75 ~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~  154 (164)
T 1lop_A           75 GLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKED  154 (164)
T ss_dssp             SCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSC
T ss_pred             ccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCC
Confidence            34446999999974 7999999999999999999997        999999999999999999988643     567766


Q ss_pred             eeec
Q psy443          265 IVLR  268 (403)
Q Consensus       265 I~L~  268 (403)
                      |.|.
T Consensus       155 v~I~  158 (164)
T 1lop_A          155 VIIE  158 (164)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            6554

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-37  Score=290.07  Aligned_cols=146  Identities=53%  Similarity=0.909  Sum_probs=134.4

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc-----ccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  198 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~-----~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~  198 (403)
                      |++|+|+||||++.||+||+||++||++..++     +|+++.||||+|+|||||||++.+++.|+.++|+..|++|...
T Consensus        71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE~~~  150 (229)
T 1z81_A           71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFD  150 (229)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCCCC
T ss_pred             eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCcccccccc
Confidence            45999999999999999999999999765431     3999999999999999999998779999999999999999999


Q ss_pred             cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEe--ecccccccccccCCCC--Ccccceeeecc
Q psy443          199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQS--GKTSKKIVLRS  269 (403)
Q Consensus       199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVi--eG~dvl~~i~~~~t~~--~~p~~~I~L~~  269 (403)
                      ++|.++|+||||+++|++++|||||++.++++||++|+|||||+  +||+||++|+++++..  ++|..+|.|..
T Consensus       151 l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~  225 (229)
T 1z81_A          151 IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE  225 (229)
T ss_dssp             SCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEE
T ss_pred             cccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEe
Confidence            99999999999999999999999999999999999999999999  9999999999998765  78888876643

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=9.2e-38  Score=279.43  Aligned_cols=145  Identities=30%  Similarity=0.494  Sum_probs=127.2

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|.|+|++|+|+||||++.||+||+||++||  ++|| |+++.||||+|+|||||||++...+   ...++.++++|..
T Consensus         5 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g~~~~dE~~   78 (166)
T 1v9t_A            5 PHVLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEAD   78 (166)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCC---BCCCCCCBCCCGG
T ss_pred             eEEEEEeCCccEEEEEcCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCcEEEcCCcCcCCC---CCCCCCccccccc
Confidence            67999999999999999999999999999999  7899 9999999999999999999986322   2234678999987


Q ss_pred             ccCCCccceeeeccc-CCCCCcceeEEEeccCcCCCCc-----eeEEEeEeecccccccccccCCCC-----Ccccceee
Q psy443          198 TLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIV  266 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~-~~~~~~SqFfI~l~~~~~Ld~~-----~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~  266 (403)
                      ...|+++|+||||++ +|++++|||||++.++++||++     |+|||+|++|||||++|+++++..     +.|..+|.
T Consensus        79 ~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~  158 (166)
T 1v9t_A           79 NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV  158 (166)
T ss_dssp             GSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCB
T ss_pred             ccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeE
Confidence            666777999999997 6999999999999999999998     999999999999999999988643     45666664


Q ss_pred             ec
Q psy443          267 LR  268 (403)
Q Consensus       267 L~  268 (403)
                      |.
T Consensus       159 I~  160 (166)
T 1v9t_A          159 IL  160 (166)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=9e-38  Score=279.90  Aligned_cols=146  Identities=29%  Similarity=0.451  Sum_probs=128.4

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      +.|+|+|++|+|+||||++.||+||+||++||  +.+| |+++.||||+|+|||||||++...   +...++.++++|..
T Consensus         4 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~~~~~~~E~~   77 (167)
T 3s6m_A            4 SMVELHTNHGVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFEPGL---KQKPTDAPIANEAN   77 (167)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCGG
T ss_pred             cEEEEEeCCceEEEEEeCCCCcHHHHHHHHHh--hhcc-cCCCEeEEecCCcEEEeccccCCC---CCCCCCCccCCccc
Confidence            78999999999999999999999999999999  7889 999999999999999999997632   22345677888865


Q ss_pred             ccCCCccceeeecc-cCCCCCcceeEEEeccCcCCCCc--------eeEEEeEeecccccccccccCCCC-----Ccccc
Q psy443          198 TLKHTGPGILSMAN-AGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQS-----GKTSK  263 (403)
Q Consensus       198 ~~~h~~~G~ls~a~-~~~~~~~SqFfI~l~~~~~Ld~~--------~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~  263 (403)
                      ...++.+|+||||+ .+|++++|||||++.++++||++        |+|||||++|||||++|+++++..     ++|..
T Consensus        78 ~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~  157 (167)
T 3s6m_A           78 NGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPND  157 (167)
T ss_dssp             GCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSS
T ss_pred             ccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCC
Confidence            54555799999999 67999999999999999999998        999999999999999999988753     67887


Q ss_pred             eeeecc
Q psy443          264 KIVLRS  269 (403)
Q Consensus       264 ~I~L~~  269 (403)
                      +|.|.+
T Consensus       158 ~v~I~~  163 (167)
T 3s6m_A          158 DVVIEK  163 (167)
T ss_dssp             CCEEEE
T ss_pred             CeEEEE
Confidence            776543

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=278.33  Aligned_cols=146  Identities=36%  Similarity=0.626  Sum_probs=132.9

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|.|+|++|+|+||||++.||++|+||++||  +.|| |+++.||||+|+|||||||++. ++.|+.++|+..+++|..
T Consensus        25 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~-~g~gg~si~g~~~~dE~~  100 (185)
T 2hq6_A           25 GKVLLKTTAGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFH  100 (185)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCB
T ss_pred             CEEEEEeCCccEEEEEeCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEECCCEEEcCCCCC-CCCCCCcccCCccccccc
Confidence            56999999999999999999999999999999  7789 9999999999999999999985 889999999999999975


Q ss_pred             -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeeccccc--ccccccCC-CCCcccceeeec
Q psy443          198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV--KKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl--~~i~~~~t-~~~~p~~~I~L~  268 (403)
                       .++|+++|+||||++++++++|||||++.++++||++|+|||||+ ||+++  ++|+.+++ ..++|..+|.|.
T Consensus       101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~  174 (185)
T 2hq6_A          101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIK  174 (185)
T ss_dssp             TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEE
T ss_pred             cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEE
Confidence             688999999999999999999999999999999999999999999 89875  57877765 456777776543

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=4.2e-37  Score=288.51  Aligned_cols=144  Identities=29%  Similarity=0.444  Sum_probs=126.5

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCC-----------C----C--cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGE-----------K----G--FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS  186 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~-----------~----g--~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~  186 (403)
                      |++|+|+||||++.||+||+||++||+|+           .    |  |+|+++.||||+|+|||||||+..++|.|+.+
T Consensus        26 t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~s  105 (234)
T 2ose_A           26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGT  105 (234)
T ss_dssp             EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC----CCCCC
T ss_pred             cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCCCCCCcc
Confidence            99999999999999999999999999875           4    5  66999999999999999999977778999999


Q ss_pred             cCCCc-----ccCCCCccCCCccceeeecc----cCCCCCcceeEEEecc------CcCCCCceeEEEeEeecccccccc
Q psy443          187 IYGNK-----FEDENFTLKHTGPGILSMAN----AGPNTNGSQFFITTVK------TAWLDNRHVVFGSVVEGLDVVKKL  251 (403)
Q Consensus       187 ~~~~~-----~~~e~~~~~h~~~G~ls~a~----~~~~~~~SqFfI~l~~------~~~Ld~~~~VFGrVieG~dvl~~i  251 (403)
                      +||..     |+  ...++|.++|+||||+    ++|++++|||||++.+      +++||++|+|||+|++|||||++|
T Consensus       106 iyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I  183 (234)
T 2ose_A          106 VYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKI  183 (234)
T ss_dssp             TTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHH
T ss_pred             ccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHH
Confidence            99887     66  4578998999999999    8999999999999999      999999999999999999999999


Q ss_pred             cccCCCC-Ccccceeeecc
Q psy443          252 ESMGSQS-GKTSKKIVLRS  269 (403)
Q Consensus       252 ~~~~t~~-~~p~~~I~L~~  269 (403)
                      +.+++.. ++|..+|.|..
T Consensus       184 ~~~~t~~~~~P~~~V~I~~  202 (234)
T 2ose_A          184 NSMIKPYAGRKYPTFSIGK  202 (234)
T ss_dssp             HHHTCCCTTCCCCCEEEEE
T ss_pred             HhCCcCCCCCccCCEEEEE
Confidence            9998754 78887775543

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4.7e-37  Score=287.67  Aligned_cols=136  Identities=32%  Similarity=0.579  Sum_probs=123.7

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccC--CCCCCCCCC-CCCCCCCc
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY--GNKFEDENF-TLKHTGPG  339 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~--g~~~~~e~~-~~~h~~~G  339 (403)
                      ..|+|+.+.+|++++||+.||  +.|| |+|+.||||+|+|||||||+++ +|.||.++|  |.+|++|.. .++|+++|
T Consensus        33 I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydgt~FhRVi~~FmiQgGdp~~-~G~Gg~si~~~g~~f~dE~~~~l~h~~~G  108 (232)
T 3bkp_A           33 LDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTFDGKPFDVETHPRLKFRYRG  108 (232)
T ss_dssp             EEEEEBTTTCHHHHHHHHHHH--HHTT-TTTCBEEEEETTTEEEECCTTS-SSSCCCCCTTTTCCBCCCCCTTCCCCSTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEeCCCEEEcCCCCC-CCCCCCccccCCCccCCccccCcCcCCCe
Confidence            345999999999999999999  6788 9999999999999999999985 889999999  899999986 68899999


Q ss_pred             EEEEecCCC--------------CCCcceEEEEecCCCCCCCCceEEEEEEecHHH--HHHHHhCCCC-CCCccccEEEe
Q psy443          340 ILSMANAGP--------------NTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV--VKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       340 ~lsma~~g~--------------~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dv--l~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      +|||||.++              ++|+||||||++++|+||++|+|||+|+ ||+|  |++|+.++++ +++|+++|+|.
T Consensus       109 ~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~  187 (232)
T 3bkp_A          109 LVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIK  187 (232)
T ss_dssp             EEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEE
T ss_pred             EEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            999999997              6999999999999999999999999999 7766  8999999996 58999999986


Q ss_pred             C
Q psy443          403 N  403 (403)
Q Consensus       403 ~  403 (403)
                      +
T Consensus       188 ~  188 (232)
T 3bkp_A          188 S  188 (232)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.3e-36  Score=281.96  Aligned_cols=147  Identities=31%  Similarity=0.552  Sum_probs=131.3

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccC--CCcccCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY--GNKFEDE  195 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~--~~~~~~e  195 (403)
                      ..|.|+|++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+|||||||++. ++.|+.++|  +..+++|
T Consensus        22 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydgt~FhRVi~~FmiQgGdp~~-~G~Gg~si~~~g~~f~dE   97 (232)
T 3bkp_A           22 GKVVLHTSLGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTFDGKPFDVE   97 (232)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHH--HHTT-TTTCBEEEEETTTEEEECCTTS-SSSCCCCCTTTTCCBCCC
T ss_pred             CEEEEEECCCcEEEEEcCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEeCCCEEEcCCCCC-CCCCCCccccCCCccCCc
Confidence            67999999999999999999999999999999  7789 9999999999999999999986 899999998  8999999


Q ss_pred             CC-ccCCCccceeeecccCC--------------CCCcceeEEEeccCcCCCCceeEEEeEeecccc--cccccccCC-C
Q psy443          196 NF-TLKHTGPGILSMANAGP--------------NTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV--VKKLESMGS-Q  257 (403)
Q Consensus       196 ~~-~~~h~~~G~ls~a~~~~--------------~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dv--l~~i~~~~t-~  257 (403)
                      .. .++|+.+|+||||++++              ++++|||||++.++|+||++|+|||+|+ ||++  |++|+.+++ .
T Consensus        98 ~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~  176 (232)
T 3bkp_A           98 THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGK  176 (232)
T ss_dssp             CCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCG
T ss_pred             cccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCC
Confidence            75 68899999999999987              6999999999999999999999999999 7877  889998876 3


Q ss_pred             CCcccceeeecc
Q psy443          258 SGKTSKKIVLRS  269 (403)
Q Consensus       258 ~~~p~~~I~L~~  269 (403)
                      .++|..+|.|..
T Consensus       177 ~~~P~~~i~I~~  188 (232)
T 3bkp_A          177 EDRPMTPPFIKS  188 (232)
T ss_dssp             GGCBSSCCBEEE
T ss_pred             CCCcCCCeEEEE
Confidence            556766664433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=5.9e-36  Score=299.49  Aligned_cols=152  Identities=58%  Similarity=0.879  Sum_probs=138.6

Q ss_pred             eeeEEEEe-----eeeEEEEEcCCCChhhHHhHHHhhcCCCCc--------ccCCCEEEeeeCCeEEEeCcCCCCCCCCC
Q psy443          118 LANAIHWY-----RKGFKGRLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFTNHNGTGG  184 (403)
Q Consensus       118 ~~v~~~T~-----~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~--------~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~  184 (403)
                      ..|.|+|+     .|+|+||||++.||+||+||++||++++|+        .|+++.||||+|+|||||||++.++|.|+
T Consensus        16 ~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~   95 (370)
T 1ihg_A           16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGG   95 (370)
T ss_dssp             CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCC
Confidence            45777777     899999999999999999999999875542        29999999999999999999997799999


Q ss_pred             cccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccce
Q psy443          185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKK  264 (403)
Q Consensus       185 ~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~  264 (403)
                      .+++|..|++|...++|+++|+||||+++|++++|||||++.++|+||++|+|||+|++||+||++|+..++..++|..+
T Consensus        96 ~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~~  175 (370)
T 1ihg_A           96 ESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKL  175 (370)
T ss_dssp             CBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSC
T ss_pred             CCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988665777776


Q ss_pred             eeecc
Q psy443          265 IVLRS  269 (403)
Q Consensus       265 I~L~~  269 (403)
                      |.|..
T Consensus       176 v~I~~  180 (370)
T 1ihg_A          176 CVIAE  180 (370)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65443

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-32  Score=271.82  Aligned_cols=132  Identities=26%  Similarity=0.367  Sum_probs=117.9

Q ss_pred             eeeEEEEe--------eeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCC------
Q psy443          118 LANAIHWY--------RKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG------  183 (403)
Q Consensus       118 ~~v~~~T~--------~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g------  183 (403)
                      ..|.++|+        .|+|+||||++.||+||+||++||  +.|| |+++.|||| ++|||||||+++ ++.|      
T Consensus       171 a~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~--~~Gf-YdGt~FHRV-~gFmIQgGDp~g-~G~G~~~~~~  245 (369)
T 3rfy_A          171 ASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEG-PAEGFIDPST  245 (369)
T ss_dssp             EEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHH--HTTT-TTTEECEEE-EEEEECCCCCCC-CCSCCCSCCC
T ss_pred             eEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCeeeee-CCeeEecCCCCC-CCCCccCccc
Confidence            78899997        999999999999999999999999  7899 999999999 999999999986 5555      


Q ss_pred             ---------------CcccCCCcccCCC-----CccCCCccceeeeccc--CCCCCcceeEEEec-------cCcCCCCc
Q psy443          184 ---------------GKSIYGNKFEDEN-----FTLKHTGPGILSMANA--GPNTNGSQFFITTV-------KTAWLDNR  234 (403)
Q Consensus       184 ---------------~~~~~~~~~~~e~-----~~~~h~~~G~ls~a~~--~~~~~~SqFfI~l~-------~~~~Ld~~  234 (403)
                                     +.++|+..++++.     ..++|+++|+||||++  +||+++|||||++.       +.++||++
T Consensus       246 g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgk  325 (369)
T 3rfy_A          246 EKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGR  325 (369)
T ss_dssp             CCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSC
T ss_pred             CcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCC
Confidence                           3455666666663     3688999999999998  89999999999994       68999999


Q ss_pred             eeEEEeEeeccccccccccc
Q psy443          235 HVVFGSVVEGLDVVKKLESM  254 (403)
Q Consensus       235 ~~VFGrVieG~dvl~~i~~~  254 (403)
                      |+|||+|++|||||++|++.
T Consensus       326 ytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          326 YAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             EEEEEEEEESTTGGGGCCTT
T ss_pred             eeEEEEEecCHHHHHHHhCC
Confidence            99999999999999999874

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.98  E-value=1.7e-33  Score=278.15  Aligned_cols=130  Identities=28%  Similarity=0.448  Sum_probs=114.0

Q ss_pred             ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCC---------------------Cccc
Q psy443          263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG---------------------GKSI  321 (403)
Q Consensus       263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~g---------------------g~~~  321 (403)
                      ..|+|+.+.+|+||+||+.||  +.|| |+|+.|||| ++|||||||+++ ++.|                     +.++
T Consensus       190 I~IeL~~d~AP~Tv~NFl~L~--~~Gf-YdGt~FHRV-~gFmIQgGDp~g-~G~G~~~~~~g~~~~iP~E~~~~G~g~pi  264 (369)
T 3rfy_A          190 FRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEG-PAEGFIDPSTEKTRTVPLEIMVTGEKTPF  264 (369)
T ss_dssp             EEEEEETTTCHHHHHHHHHHH--HTTT-TTTEECEEE-EEEEECCCCCCC-CCSCCCSCCCCCCCSSSSSSCSSSSCCSC
T ss_pred             EEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCeeeee-CCeeEecCCCCC-CCCCccCcccCcCcccCccccccCCCCCc
Confidence            344999999999999999999  7899 999999999 999999999985 4444                     4577


Q ss_pred             CCCCCCCCCC-----CCCCCCCcEEEEecC--CCCCCcceEEEEe-------cCCCCCCCCceEEEEEEecHHHHHHHHh
Q psy443          322 YGNKFEDENF-----TLKHTGPGILSMANA--GPNTNGSQFFITT-------VKTAWLDNRHVVFGSVVEGLDVVKKLES  387 (403)
Q Consensus       322 ~g~~~~~e~~-----~~~h~~~G~lsma~~--g~~s~gSqFfItl-------~~~~~Ld~~~~vfG~VieG~dvl~~i~~  387 (403)
                      |+..|++|++     .++|+.+|+|||||.  +||+|+|||||++       .++++||++|+|||+|++|||||++|++
T Consensus       265 yg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          265 YGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            8888888754     688999999999998  8999999999999       4689999999999999999999999987


Q ss_pred             CCCCCCCccccEEEe
Q psy443          388 MGSQSGKTSKKIVCF  402 (403)
Q Consensus       388 ~~t~~~~P~~~i~I~  402 (403)
                           +.++.+|+|+
T Consensus       345 -----GD~I~sv~I~  354 (369)
T 3rfy_A          345 -----GDVIESIQVV  354 (369)
T ss_dssp             -----TCEEEEEEEE
T ss_pred             -----CCceEEEEEe
Confidence                 3456666665

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=91.52  E-value=1.4  Score=37.90  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      |.+.|.-.-..+.++|+.+.||+||+.|+++--      +... +.+- .+..+.  +...  .        .... |+.
T Consensus        30 ~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LP------l~~~-~~~~-g~E~y~--~lp~--~--------l~~~-en~   88 (153)
T 2nnz_A           30 MRLRIRFESAECEVELYEEWAPETVRAIADALP------IKST-ANRW-GDEIYF--TTQV--A--------VEKE-ENS   88 (153)
T ss_dssp             CCEEEEETTEEEEECCCTTSCHHHHHHHHHTCS------EEEE-EEEE-TTEEEE--CCSC--C--------CCCS-SCC
T ss_pred             eEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCC------cEEE-HHhh-CCcEEE--ECCC--C--------CCCC-CCC
Confidence            677777677789999999999999999999861      2222 1111 122221  1100  0        0111 222


Q ss_pred             ccCCCccceeeecccCCCCCcceeEEEeccCcCCC------CceeEEEeEeecccccccccc
Q psy443          198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLD------NRHVVFGSVVEGLDVVKKLES  253 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld------~~~~VFGrVieG~dvl~~i~~  253 (403)
                      . ....+|.|++-..+.+     +.|-+++.|...      ..-.+||+|.+|.+.|.++..
T Consensus        89 ~-~~~~~GDI~Yy~pg~~-----LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~~  144 (153)
T 2nnz_A           89 K-DVVELGDVAYWIPGKA-----ICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVAD  144 (153)
T ss_dssp             B-CCCCTTEEEEETTTTE-----EEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCCS
T ss_pred             c-ccCCCCeEEEeCCCCE-----EEEEECCccccccccccccccEEEEEEccCHHHHhhCCC
Confidence            2 2345888888765443     777777764332      224899999999888777643

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=85.41  E-value=1.9  Score=37.88  Aligned_cols=105  Identities=22%  Similarity=0.237  Sum_probs=59.2

Q ss_pred             EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCe--EEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccce
Q psy443          129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNF--MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGI  206 (403)
Q Consensus       129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~--~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~  206 (403)
                      ++.+|..|.||+||+.|.++- .     |.+..+|-..-+.  ++--|++..           ...+.|+...... +|-
T Consensus        35 ~~A~Lldd~APkTcaA~~~~L-P-----~~~~viHarwSGeeVy~~lp~f~~-----------~~~g~EN~T~~P~-pGD   96 (188)
T 3kop_A           35 CKALLLDDVAPRTSKAVWDAL-P-----QSSQVFHGKYARNEIYNLVPAFAP-----------KEPGAENTTVTPI-PGD   96 (188)
T ss_dssp             EEEEECTTTSHHHHHHHHHHC-C-----EEEECEECSSSSSEEEEEEECCSS-----------SCCCSCSEESSCC-TTE
T ss_pred             EEEEEccccChHHHHHHHHhC-C-----CCcceEEEEEecceEEEECCcccc-----------cCCCcCCCCCCCC-CCc
Confidence            788999999999999999976 1     4444444333332  222222211           1233444444444 777


Q ss_pred             eeec---c---c----C--------CCCCcceeEEEeccCcC-CCCc-----eeEEEeEeecccccccc
Q psy443          207 LSMA---N---A----G--------PNTNGSQFFITTVKTAW-LDNR-----HVVFGSVVEGLDVVKKL  251 (403)
Q Consensus       207 ls~a---~---~----~--------~~~~~SqFfI~l~~~~~-Ld~~-----~~VFGrVieG~dvl~~i  251 (403)
                      |++-   .   .    +        ......++.|-++.+-. +.++     -.+|++|++|.|-+...
T Consensus        97 Il~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~TIveGle~la~~  165 (188)
T 3kop_A           97 VCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAA  165 (188)
T ss_dssp             EEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEEEEESHHHHHHH
T ss_pred             EEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEEEecCHHHHHHH
Confidence            7763   1   1    1        01112466666666542 2322     27999999998766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	6e-46
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	2e-45
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-40
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	6e-40
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-39
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	7e-39
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-38
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	9e-38
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	3e-38
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	2e-37
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-37
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	4e-37
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	5e-37
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	1e-36
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-36
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-36
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	7e-36
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	3e-35
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	7e-36
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-35
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-35
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	1e-34
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-34
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	4e-34
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-33
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-33
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-31
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	7e-31
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	8e-31
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-30
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	6e-29
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-28
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-27
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-27
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-24
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	4e-24
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	4e-24
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-23
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	6e-24
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-23
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-21
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-20
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-19
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-19

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  153 bits (388), Expect = 6e-46
 Identities = 99/137 (72%), Positives = 111/137 (81%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           K  L  DVVPKTA NFRALCTGEKGFG+  S FHRVIP+FM QGGDFT  NGTGGKSIYG
Sbjct: 19  KFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYG 78

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF DENF LKH  PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK
Sbjct: 79  AKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVK 138

Query: 384 KLESMGSQSGKTSKKIV 400
            +E+ GS SGK   +I 
Sbjct: 139 AIEAEGSGSGKPRSRIE 155

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  152 bits (384), Expect = 2e-45
 Identities = 98/135 (72%), Positives = 111/135 (82%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L  DVVPKTA NFRALCTGEKGFG+  S FHRVIP+FM QGGDFT  NGTGGKSIYG K
Sbjct: 21  KLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAK 80

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF LKH  PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK +
Sbjct: 81  FADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAI 140

Query: 252 ESMGSQSGKTSKKIV 266
           E+ GS SGK   +I 
Sbjct: 141 EAEGSGSGKPRSRIE 155

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  139 bits (351), Expect = 2e-40
 Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 6/143 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG 317
              L SD+ P+T ENFRALCTGE      K   +K+S FHR+IP FMCQGGD TN NG+G
Sbjct: 21  IFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG 80

Query: 318 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 377
           G+SIYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+E
Sbjct: 81  GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIE 140

Query: 378 GLDVVKKLESMGSQSGKTSKKIV 400
           G++VV+++E  G++SG   + +V
Sbjct: 141 GMNVVREMEKEGAKSGYVKRSVV 163

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  138 bits (347), Expect = 6e-40
 Identities = 85/141 (60%), Positives = 105/141 (74%), Gaps = 6/141 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
            L SD+ P+T ENFRALCTGE      K   +K+S FHR+IP FMCQGGD TN NG+GG+
Sbjct: 23  ELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGE 82

Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
           SIYG  F DENF +KH  PG+LSMANAGPNTN SQFFIT V   WLD +HVVFG V+EG+
Sbjct: 83  SIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGM 142

Query: 246 DVVKKLESMGSQSGKTSKKIV 266
           +VV+++E  G++SG   + +V
Sbjct: 143 NVVREMEKEGAKSGYVKRSVV 163

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 2e-39
 Identities = 111/137 (81%), Positives = 126/137 (91%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            + L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG
Sbjct: 20  VLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG 79

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
           ++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVK
Sbjct: 80  SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVK 139

Query: 384 KLESMGSQSGKTSKKIV 400
           K+ES GS+SG+TSKKIV
Sbjct: 140 KIESFGSKSGRTSKKIV 156

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 7e-39
 Identities = 111/134 (82%), Positives = 125/134 (93%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 23  LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 82

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+E
Sbjct: 83  PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 142

Query: 253 SMGSQSGKTSKKIV 266
           S GS+SG+TSKKIV
Sbjct: 143 SFGSKSGRTSKKIV 156

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  134 bits (337), Expect = 2e-38
 Identities = 102/144 (70%), Positives = 110/144 (76%), Gaps = 7/144 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGE-------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            + L  DVVPKTA NFRALCTGE       K   FK S FHR+IPNFM QGGDFT  NGT
Sbjct: 21  VMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT 80

Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           GG+SIYG KF DENF  KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VV
Sbjct: 81  GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVV 140

Query: 377 EGLDVVKKLESMGSQSGKTSKKIV 400
           EGLDVVK +ES GSQSGK  K  +
Sbjct: 141 EGLDVVKAVESNGSQSGKPVKDCM 164

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  132 bits (333), Expect = 9e-38
 Identities = 102/141 (72%), Positives = 109/141 (77%), Gaps = 7/141 (4%)

Query: 133 LRSDVVPKTAENFRALCTGE-------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
           L  DVVPKTA NFRALCTGE       K   FK S FHR+IPNFM QGGDFT  NGTGG+
Sbjct: 24  LYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83

Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
           SIYG KF DENF  KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGL
Sbjct: 84  SIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143

Query: 246 DVVKKLESMGSQSGKTSKKIV 266
           DVVK +ES GSQSGK  K  +
Sbjct: 144 DVVKAVESNGSQSGKPVKDCM 164

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  133 bits (335), Expect = 3e-38
 Identities = 87/157 (55%), Positives = 109/157 (69%), Gaps = 7/157 (4%)

Query: 251 LESMGSQSGKTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQG 307
           +E     + +T        L    VPKTA+NFR LC    G G+++STFHR+IPNFM QG
Sbjct: 8   VEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQG 67

Query: 308 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDN 367
           GDFT  NGTGG+SIYG+KF DENF+ KH   GILSMANAGPNTNGSQFFITT  T+WLD 
Sbjct: 68  GDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDG 127

Query: 368 RHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKKIV 400
           +HVVFG V +     VVK++E++GS SG  +++ +  
Sbjct: 128 KHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPK 164

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  131 bits (330), Expect = 2e-37
 Identities = 85/139 (61%), Positives = 104/139 (74%), Gaps = 4/139 (2%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L    VPKTA+NFR LC    G G+++STFHR+IPNFM QGGDFT  NGTGG+SIYG+K
Sbjct: 26  NLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDK 85

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVK 249
           F DENF+ KH   GILSMANAGPNTNGSQFFITT  T+WLD +HVVFG V +     VVK
Sbjct: 86  FADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVK 145

Query: 250 KLESMGSQSG--KTSKKIV 266
           ++E++GS SG  +++ +  
Sbjct: 146 EIEALGSSSGSVRSNTRPK 164

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  132 bits (332), Expect = 1e-37
 Identities = 77/146 (52%), Positives = 95/146 (65%), Gaps = 9/146 (6%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNG 315
            + L +D+ P+T  NF  LCTG  G G        +K STFHRVI NFM QGGDFT  +G
Sbjct: 21  VMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG 80

Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           TGG+SIYG  F+DE F +KH  P ++SMAN GPNTNGSQFFITT     L+N HVVFG V
Sbjct: 81  TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKV 140

Query: 376 VEGLDVVKKLESMGSQS-GKTSKKIV 400
           V G +VV K+E + + S  +    +V
Sbjct: 141 VSGQEVVTKIEYLKTNSKNRPLADVV 166

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  130 bits (328), Expect = 4e-37
 Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 9/143 (6%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L +D+ P+T  NF  LCTG  G G        +K STFHRVI NFM QGGDFT  +GTGG
Sbjct: 24  LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 83

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG  F+DE F +KH  P ++SMAN GPNTNGSQFFITT     L+N HVVFG VV G
Sbjct: 84  ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 143

Query: 245 LDVVKKLESMGSQS-GKTSKKIV 266
            +VV K+E + + S  +    +V
Sbjct: 144 QEVVTKIEYLKTNSKNRPLADVV 166

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  131 bits (330), Expect = 5e-37
 Identities = 89/145 (61%), Positives = 104/145 (71%), Gaps = 8/145 (5%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNG 315
            + L +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGGDF+N NG
Sbjct: 32  VLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNG 91

Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           TGG+SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +HVVFG V
Sbjct: 92  TGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQV 151

Query: 376 VEGLDVVKKLESMGSQSGKTSKKIV 400
           ++G+ V K LE++  +  K +K  V
Sbjct: 152 IKGMGVAKILENVEVKGEKPAKLCV 176

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (326), Expect = 1e-36
 Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 8/142 (5%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
           L +D+VPKTAENFRALCTGEKG G        FK   FHR+I  FM QGGDF+N NGTGG
Sbjct: 35  LFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGG 94

Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
           +SIYG KFEDENF  KH   G+LSMANAG NTNGSQFFITTV T  LD +HVVFG V++G
Sbjct: 95  ESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG 154

Query: 245 LDVVKKLESMGSQSGKTSKKIV 266
           + V K LE++  +  K +K  V
Sbjct: 155 MGVAKILENVEVKGEKPAKLCV 176

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-36
 Identities = 67/147 (45%), Positives = 90/147 (61%), Gaps = 10/147 (6%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            T+K    + L  D+ PKT ENF  LC   K   +  + FHR I NF+ QGGD T   GT
Sbjct: 6   HTNKGDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPT-GTGT 61

Query: 317 GGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           GG+S +G  F+DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG V
Sbjct: 62  GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRV 121

Query: 376 VEGLDVVKKLESM--GSQSGKTSKKIV 400
           V G DV+  +E++    ++ +  ++I 
Sbjct: 122 VGGFDVLTAMENVESDPKTDRPKEEIR 148

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 3e-36
 Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 7/143 (4%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  D+ PKT ENF  LC   K   +  + FHR I NF+ QGGD T   GTGG+S +G  F
Sbjct: 16  LHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPF 71

Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           +DE    L HTG GILSMAN+GPN+N SQFFIT    A+LD +H +FG VV G DV+  +
Sbjct: 72  KDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM 131

Query: 252 ESM--GSQSGKTSKKIVLRSDVV 272
           E++    ++ +  ++I + +  V
Sbjct: 132 ENVESDPKTDRPKEEIRIDATTV 154

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 7e-36
 Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 9/146 (6%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
           +TS     + L     PKT +NF  L        +  + FHR+I +FM QGGD T   G 
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTG-TGR 72

Query: 317 GGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           GG SIYG +FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V
Sbjct: 73  GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132

Query: 376 VEGLDVVKKLESMGSQS-GKTSKKIV 400
            +G+ +V ++  + + S  +    + 
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVK 158

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 3e-35
 Identities = 61/143 (42%), Positives = 83/143 (58%), Gaps = 6/143 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PKT +NF  L        +  + FHR+I +FM QGGD T   G GG SIYG +
Sbjct: 26  ELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQ 81

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE +  LK TG GIL+MANAGP+TNGSQFF+T   T WLD +H +FG V +G+ +V +
Sbjct: 82  FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141

Query: 251 LESMGSQS-GKTSKKIVLRSDVV 272
           +  + + S  +    + +     
Sbjct: 142 VGMVETNSQDRPVDDVKIIKAYP 164

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  127 bits (320), Expect = 7e-36
 Identities = 85/137 (62%), Positives = 96/137 (70%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L    VPKTA NF  L    KG G+  S FHRVI +FM QGGDFT  +GTGG+SIYG
Sbjct: 24  VIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYG 83

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF DENF LKH G G LSMANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+
Sbjct: 84  EKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVR 143

Query: 384 KLESMGSQSGKTSKKIV 400
           K+E      G   K+ V
Sbjct: 144 KIEQTEKLPGDRPKQDV 160

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  126 bits (317), Expect = 2e-35
 Identities = 84/135 (62%), Positives = 95/135 (70%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L    VPKTA NF  L    KG G+  S FHRVI +FM QGGDFT  +GTGG+SIYG K
Sbjct: 26  GLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEK 85

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           F DENF LKH G G LSMANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+K+
Sbjct: 86  FADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKI 145

Query: 252 ESMGSQSGKTSKKIV 266
           E      G   K+ V
Sbjct: 146 EQTEKLPGDRPKQDV 160

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 3e-35
 Identities = 101/137 (73%), Positives = 120/137 (87%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           +++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 19  QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 78

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++
Sbjct: 79  KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 138

Query: 384 KLESMGSQSGKTSKKIV 400
           ++E+ GS+ GK  +K++
Sbjct: 139 QIEAQGSKDGKPKQKVI 155

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-34
 Identities = 101/134 (75%), Positives = 117/134 (87%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 22  LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 81

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DENF LKHTGPG+LSMAN+GPNTNGSQFF+T  KT WLD +HVVFG V EGLDV++++E
Sbjct: 82  DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 141

Query: 253 SMGSQSGKTSKKIV 266
           + GS+ GK  +K++
Sbjct: 142 AQGSKDGKPKQKVI 155

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  124 bits (312), Expect = 1e-34
 Identities = 81/138 (58%), Positives = 95/138 (68%), Gaps = 1/138 (0%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L  +VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGDFT  +GTGG SIYG
Sbjct: 25  VIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYG 84

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
             F DENF LKH G G +SMANAGP+TNGSQFFIT  K  WLD +HVVFG V++G+ VV 
Sbjct: 85  ETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVH 144

Query: 384 KLESMGSQS-GKTSKKIV 400
            +E   +    +      
Sbjct: 145 SIELQATDGHDRPLTDCT 162

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  123 bits (308), Expect = 4e-34
 Identities = 80/135 (59%), Positives = 94/135 (69%), Gaps = 1/135 (0%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  +VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGDFT  +GTGG SIYG  F
Sbjct: 28  LFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETF 87

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
            DENF LKH G G +SMANAGP+TNGSQFFIT  K  WLD +HVVFG V++G+ VV  +E
Sbjct: 88  PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 147

Query: 253 SMGSQS-GKTSKKIV 266
              +    +      
Sbjct: 148 LQATDGHDRPLTDCT 162

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  121 bits (303), Expect = 2e-33
 Identities = 86/138 (62%), Positives = 103/138 (74%), Gaps = 2/138 (1%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
            I L  + VPKT ENF+ L +GE GFG+K S FHRVI NFM QGGDFTN +GTGGKSIYG
Sbjct: 23  VIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYG 82

Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
            +F+DEN  +KH   G +SMANAGPN+NGSQFF+TT  T WLD RHVVFG VVEG+DVVK
Sbjct: 83  TRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVK 141

Query: 384 KLESMGS-QSGKTSKKIV 400
           K+E+  +  + K  K + 
Sbjct: 142 KVENTKTGLNDKPKKAVK 159

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  119 bits (300), Expect = 4e-33
 Identities = 85/135 (62%), Positives = 102/135 (75%), Gaps = 2/135 (1%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           L  + VPKT ENF+ L +GE GFG+K S FHRVI NFM QGGDFTN +GTGGKSIYG +F
Sbjct: 26  LFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRF 85

Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
           +DEN  +KH   G +SMANAGPN+NGSQFF+TT  T WLD RHVVFG VVEG+DVVKK+E
Sbjct: 86  DDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVE 144

Query: 253 SMGS-QSGKTSKKIV 266
           +  +  + K  K + 
Sbjct: 145 NTKTGLNDKPKKAVK 159

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 81/143 (56%), Positives = 102/143 (71%), Gaps = 6/143 (4%)

Query: 264 KIVLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           KI L +DVVPKTAENFR  CTGE        G+K STFHRVI +FM QGGDF N +GTG 
Sbjct: 24  KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 83

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
            SIY   F DENF L+H+ PG+LSMAN+GP+TNG QFFIT  K  WLD +HVVFG +++G
Sbjct: 84  ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 143

Query: 379 LDVVKKLESMGS-QSGKTSKKIV 400
           L V++K+E++ +  + K    +V
Sbjct: 144 LLVMRKIENVPTGPNNKPKLPVV 166

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  114 bits (285), Expect = 7e-31
 Identities = 79/140 (56%), Positives = 100/140 (71%), Gaps = 6/140 (4%)

Query: 133 LRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 187
           L +DVVPKTAENFR  CTGE        G+K STFHRVI +FM QGGDF N +GTG  SI
Sbjct: 27  LFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASI 86

Query: 188 YGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV 247
           Y   F DENF L+H+ PG+LSMAN+GP+TNG QFFIT  K  WLD +HVVFG +++GL V
Sbjct: 87  YRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLV 146

Query: 248 VKKLESMGS-QSGKTSKKIV 266
           ++K+E++ +  + K    +V
Sbjct: 147 MRKIENVPTGPNNKPKLPVV 166

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 8e-31
 Identities = 63/147 (42%), Positives = 82/147 (55%), Gaps = 10/147 (6%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            T     KI +  +  PKT ENF ALC       +    FHR I  FM Q GD     G 
Sbjct: 6   HTDVGDIKIEVFCERTPKTCENFLALC---ASNYYNGCIFHRNIKGFMVQTGDP-TGTGR 61

Query: 317 GGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           GG SI+G KFEDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V
Sbjct: 62  GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121

Query: 376 VEGLDVVKKLESM--GSQSGKTSKKIV 400
           ++GL+ + +LE +    ++ +    + 
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVH 148

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 7/140 (5%)

Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
           +  +  PKT ENF ALC       +    FHR I  FM Q GD     G GG SI+G KF
Sbjct: 16  VFCERTPKTCENFLALC---ASNYYNGCIFHRNIKGFMVQTGDP-TGTGRGGNSIWGKKF 71

Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
           EDE +  LKH   G++SMAN GPNTNGSQFFIT  K   LD ++ VFG V++GL+ + +L
Sbjct: 72  EDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 131

Query: 252 ESM--GSQSGKTSKKIVLRS 269
           E +    ++ +    + ++ 
Sbjct: 132 EKLPVNEKTYRPLNDVHIKD 151

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  109 bits (273), Expect = 6e-29
 Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 9/146 (6%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFG-----FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
           K  L  ++VPKT+ENFR  CTGE         +K++ FHRVI  FM QGGDF NHNG+G 
Sbjct: 34  KFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS 93

Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
            SIYG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG +++ 
Sbjct: 94  LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN 153

Query: 379 --LDVVKKLESM--GSQSGKTSKKIV 400
             L ++KK+E++       K    I 
Sbjct: 154 DSLLLLKKIENVSVTPYIYKPKIPIN 179

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  108 bits (269), Expect = 2e-28
 Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 9/144 (6%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFG-----FKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
            L  ++VPKT+ENFR  CTGE         +K++ FHRVI  FM QGGDF NHNG+G  S
Sbjct: 36  ELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS 95

Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG-- 244
           IYG KF+DENF +KH   G+LSMAN+GPNTNG QFFITT K  WLD ++VVFG +++   
Sbjct: 96  IYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDS 155

Query: 245 LDVVKKLESM--GSQSGKTSKKIV 266
           L ++KK+E++       K    I 
Sbjct: 156 LLLLKKIENVSVTPYIYKPKIPIN 179

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 21/159 (13%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFG------------FKDSTFHRVIPNFM 304
            T++   KI L  +  PKT  NF  L  G K +             +  + FHRVI  FM
Sbjct: 9   HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68

Query: 305 CQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAW 364
            QGGD     GTG         ++ +  L+   P +L+MANAGP TNGSQFFIT  KT  
Sbjct: 69  IQGGDP---TGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125

Query: 365 LDNRHVVFGSVV--EGLDVVKKLESMGSQ-SGKTSKKIV 400
           L+ RH +FG V+  E   VV+ +    +  + + +  +V
Sbjct: 126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVV 164

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  103 bits (258), Expect = 5e-27
 Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFG------------FKDSTFHRVIPNFMCQGGDFTNH 179
            L  +  PKT  NF  L  G K +             +  + FHRVI  FM QGGD    
Sbjct: 18  ALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP--- 74

Query: 180 NGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 239
            GTG         ++ +  L+   P +L+MANAGP TNGSQFFIT  KT  L+ RH +FG
Sbjct: 75  TGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFG 134

Query: 240 SVV--EGLDVVKKLESMGSQ-SGKTSKKIVLRS 269
            V+  E   VV+ +    +  + + +  +V+ S
Sbjct: 135 EVIDAESQRVVEAISKTATDGNDRPTDPVVIES 167

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 2e-24
 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 8/146 (5%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            TS       L     PKT ENF   C   +   +   TFHR+I  FM Q GD T     
Sbjct: 15  HTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 71

Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
           G     G   ++ + TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H VFG V 
Sbjct: 72  GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 131

Query: 377 EGLDVVKKLESM--GSQSGKTSKKIV 400
           +G++VV+++ ++    ++ K  + + 
Sbjct: 132 KGMEVVQRISNVKVNPKTDKPYEDVS 157

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 4e-24
 Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 5/140 (3%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +L     PKT ENF   C   +   +   TFHR+I  FM Q GD T     G     G  
Sbjct: 24  KLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEF 80

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
            ++ + TL+H  P  LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++
Sbjct: 81  EDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRI 140

Query: 252 ESM--GSQSGKTSKKIVLRS 269
            ++    ++ K  + + + +
Sbjct: 141 SNVKVNPKTDKPYEDVSIIN 160

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 95.4 bits (236), Expect = 4e-24
 Identities = 55/146 (37%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            T+     I L      KT +NF          G+ ++     +           + +GT
Sbjct: 7   YTTMGDIHISLFYKECKKTVQNFSVHSI----NGYYNNCIFHRVIKHFMVQTGDPSGDGT 62

Query: 317 GGKSIYGNKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
           GG+SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V
Sbjct: 63  GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 122

Query: 376 VEGLDVVKKLESMG-SQSGKTSKKIV 400
            +G  +V  +E +   +  K  + I 
Sbjct: 123 TQGSKIVLDIEKVRTDKRDKPLEDIK 148

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 93.9 bits (232), Expect = 1e-23
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 6/140 (4%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L      KT +NF          G+ ++     +           + +GTGG+SI+GN+
Sbjct: 16  SLFYKECKKTVQNFSVHSI----NGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNE 71

Query: 192 FEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE F  L H+ P ++SMAN GPNTNGSQFFITTV   WLD +H VFG V +G  +V  
Sbjct: 72  FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLD 131

Query: 251 LESMG-SQSGKTSKKIVLRS 269
           +E +   +  K  + I + +
Sbjct: 132 IEKVRTDKRDKPLEDIKILN 151

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 95.3 bits (236), Expect = 6e-24
 Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
           ++ L     PKT  NF  LC      GF D+T    +       G      G GGKSIYG
Sbjct: 29  EVELYWYHSPKTCLNFYTLCEM----GFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYG 84

Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
             FEDE N  LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  V + +  +
Sbjct: 85  EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCI 144

Query: 383 KKLESMGSQSG 393
           + + S+ + + 
Sbjct: 145 ENIASVQTTAT 155

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 93.8 bits (232), Expect = 2e-23
 Identities = 54/129 (41%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     PKT  NF  LC      GF D+T    +       G      G GGKSIYG  
Sbjct: 31  ELYWYHSPKTCLNFYTLCEM----GFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEY 86

Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
           FEDE N  LKHTG GILSM+N GPNTN SQFFIT      LD +H +F  V + +  ++ 
Sbjct: 87  FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIEN 146

Query: 251 LESMGSQSG 259
           + S+ + + 
Sbjct: 147 IASVQTTAT 155

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 86.9 bits (214), Expect = 5e-21
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            T+     I    D  P+T +NF   C   +   + ++ FHRVI  FM Q        G 
Sbjct: 5   HTNHGDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQ--GGGFEPGM 59

Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL--------DNR 368
             K+       + N  LK+T   +       P++  +QFFI  V   +L           
Sbjct: 60  KQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119

Query: 369 HVVFGSVVEGLDVVKKLESMGSQSGKTSK 397
           + VF  VV+G+D V K++ + +      +
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQ 148

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 18/151 (11%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
           +   D  P+T +NF   C   +   + ++ FHRVI  FM Q        G   K+     
Sbjct: 14  KTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQ--GGGFEPGMKQKATKEPI 68

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL--------DNRHVVFGSVVE 243
             + N  LK+T   +       P++  +QFFI  V   +L           + VF  VV+
Sbjct: 69  KNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVD 128

Query: 244 GLDVVKKLESM-----GSQSGKTSKKIVLRS 269
           G+D V K++ +     G       + +++ S
Sbjct: 129 GMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (201), Expect = 3e-19
 Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
            TS    ++ L     P + +NF           + ++TFHRVIP FM QGG FT     
Sbjct: 10  TTSAGNIELELDKQKAPVSVQNFVDYVNSGF---YNNTTFHRVIPGFMIQGGGFTEQMQQ 66

Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR-----HVV 371
              +       D    L++T   I     A  ++  SQFFI     A+LD+      + V
Sbjct: 67  KKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124

Query: 372 FGSVVEGLDVVKKLESM-----GSQSGKTSKKIV 400
           FG VV+G+DV  K+  +     G      SK +V
Sbjct: 125 FGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 158

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (201), Expect = 4e-19
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
            L     P + +NF           + ++TFHRVIP FM QGG FT        +     
Sbjct: 19  ELDKQKAPVSVQNFVDYVNSGF---YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKN 75

Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLD 246
             D    L++T   I     A  ++  SQFFI     A+LD+      + VFG VV+G+D
Sbjct: 76  EADNG--LRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMD 133

Query: 247 VVKKLESM-----GSQSGKTSKKIVLRS-DVVP 273
           V  K+  +     G      SK +V+ S  V+P
Sbjct: 134 VADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.98
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.98
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.98
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.98
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.98
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.97
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.97
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.97
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.97

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=278.72  Aligned_cols=147  Identities=68%  Similarity=1.142  Sum_probs=137.3

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCC-CCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK-GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  332 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~-g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~  332 (403)
                      .+.+.+.++|  +|+.+.+|++++||++||++++ ++ |+++.||||+|+|++|+||+....+.++.+.++..++++...
T Consensus         9 ~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~   87 (161)
T d2r99a1           9 KIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFI   87 (161)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             EECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEeeeEEeeeccCCCCCCCccccCccccccccc
Confidence            4556777777  9999999999999999998755 45 999999999999999999999888888888889889989999


Q ss_pred             CCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       333 ~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      .+|+.+|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|+..++.+++|+++|+|+|
T Consensus        88 ~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~  158 (161)
T d2r99a1          88 LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIAD  158 (161)
T ss_dssp             SCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             cccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.8e-38  Score=278.99  Aligned_cols=148  Identities=68%  Similarity=1.101  Sum_probs=138.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      +..+++.++|  +|+.+.+|++++||+.||+++.+++|+++.||||+|++++|+|++..+.+.++.+.++.++.+|+..+
T Consensus         9 ~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   88 (162)
T d2cfea1           9 TKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQL   88 (162)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCccccccCCC
Confidence            4456777776  99999999999999999987776569999999999999999999998888888888999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|+++|+|++
T Consensus        89 ~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~I~~  158 (162)
T d2cfea1          89 KHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAK  158 (162)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             CCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-38  Score=277.88  Aligned_cols=148  Identities=76%  Similarity=1.269  Sum_probs=138.0

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+++.++|  +|+.+.+|.+++||++||++.++..|+++.||||++++++|+||+....+.++...++..++++....
T Consensus        10 ~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~~~~   89 (164)
T d2z6wa1          10 DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTL   89 (164)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCcCCcccccc
Confidence            4456777876  99999999999999999977655449999999999999999999998888888899999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      .|+.+|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|+.+++.+++|+++|+|+|
T Consensus        90 ~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~  159 (164)
T d2z6wa1          90 KHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD  159 (164)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             ccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=9e-38  Score=279.18  Aligned_cols=147  Identities=71%  Similarity=1.101  Sum_probs=138.1

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCC--------CCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGE--------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK  325 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~--------~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~  325 (403)
                      .+.+++.++|  +|+.+.||.+++||++||+++        .++ |+++.||||++++++|+||+..+++.++..+++..
T Consensus        11 ~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~   89 (172)
T d2igva1          11 TIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEK   89 (172)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             EECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCCCCcccCCCc
Confidence            5566777777  999999999999999999874        456 99999999999999999999988999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +++|.....|+.+|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|+.+++++++|+++|+|+|
T Consensus        90 ~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~  167 (172)
T d2igva1          90 FPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIAD  167 (172)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             cCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCCeEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.3e-37  Score=275.00  Aligned_cols=147  Identities=59%  Similarity=1.036  Sum_probs=136.8

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCC-------CCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGE-------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~-------~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      .+.+.+.++|  +|+.+.+|++|+||+.||+++       .++ |+++.||||++++++|+|+...+.+.++...++..+
T Consensus        11 ~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~   89 (170)
T d1qnga_          11 SIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSF   89 (170)
T ss_dssp             EESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             EECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCCcccCCCcc
Confidence            4455666666  999999999999999999764       456 999999999999999999999888888888899999


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      +++...+.|+.+|+|+||+.+|++++|||||+++++|+||++|+|||||++|||||++|+..++++++|+++|+|+|
T Consensus        90 ~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~  166 (170)
T d1qnga_          90 TDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             ccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.5e-36  Score=272.20  Aligned_cols=148  Identities=56%  Similarity=0.919  Sum_probs=137.1

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      .+.+++.++|  +|+.+.+|++++||+.||+++++..|+++.||||++++++|+||+....+.++.+.++..++++....
T Consensus        15 ~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~   94 (182)
T d2rmca_          15 RIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKL   94 (182)
T ss_dssp             EETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCCcCCccccccccc
Confidence            4456677777  99999999999999999988665459999999999999999999998888888999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      .|+.+|+|+||+.++++++|||||+++++++||++|+|||||++|||||++|+.++++ +++|+++|+|++
T Consensus        95 ~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~  165 (182)
T d2rmca_          95 KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVN  165 (182)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             ccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999985 589999999974

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=5.3e-36  Score=267.99  Aligned_cols=147  Identities=52%  Similarity=0.868  Sum_probs=135.2

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCC---------CCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGE---------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~---------~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      +..+++.++|  +|+.+.+|.+++||+.||+++         .++ |+++.||||++++++|+|+...+.+.++.+.++.
T Consensus        11 ~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~~~~~~~~~   89 (174)
T d1a33a_          11 TIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG   89 (174)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSS
T ss_pred             EECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCCCCCCccCc
Confidence            4456677777  999999999999999999874         356 9999999999999999999998888888888888


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      ...++....+|+++|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|+.++|+ +++|+++|+|+|
T Consensus        90 ~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~  169 (174)
T d1a33a_          90 MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN  169 (174)
T ss_dssp             CBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             cccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            8888888999999999999999999999999999999999999999999999999999999999985 589999999985

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=4.3e-36  Score=266.68  Aligned_cols=147  Identities=56%  Similarity=0.919  Sum_probs=132.1

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+++.++|  +|+.+.+|.+++||+.||+++.+.+|+++.|||++|++++|+||+...++.++...++..++++.. .
T Consensus        13 ~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~-~   91 (166)
T d1xo7a_          13 TIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENL-K   91 (166)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCC-C
T ss_pred             EECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCCCcccccccc-c
Confidence            4456677776  999999999999999999887777799999999999999999999988888888877777776655 4


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      .|+.+|+|+||+.+||+++|||||+++++|+||++|+|||||++|||+|++|+.++++ +++|+++|+|.|
T Consensus        92 ~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  162 (166)
T d1xo7a_          92 IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKIND  162 (166)
T ss_dssp             SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             ccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEe
Confidence            5557999999999999999999999999999999999999999999999999999985 589999999975

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=265.45  Aligned_cols=147  Identities=43%  Similarity=0.690  Sum_probs=130.5

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      |+|+|+|++|+|+||||++.||++|+||++||  +.++ |+++.|||+++++++|+||+.. ...++...++..++.|. 
T Consensus         1 msV~~~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~e~~   76 (159)
T d2ok3a1           1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYS   76 (159)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCC
T ss_pred             CEEEEEeCCeEEEEEEcCCCChHHHHHHHHHH--hhhc-ccceeEecccCCeEEEeCCccc-cCCCCcccCCCccccccc
Confidence            68999999999999999999999999999999  7788 9999999999999999999887 45555556677777774 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC--CCcccceeeec
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVLR  268 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~--~~~p~~~I~L~  268 (403)
                      ..++|+++|+|+|+++++++++|||||++.+.|+||++|+|||||++||++|++|++.++.  ..+|..+|.|.
T Consensus        77 ~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~  150 (159)
T d2ok3a1          77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIK  150 (159)
T ss_dssp             TTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEE
T ss_pred             cCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEE
Confidence            4688999999999999999999999999999999999999999999999999999988753  45677766443

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=3.8e-36  Score=270.94  Aligned_cols=148  Identities=57%  Similarity=0.919  Sum_probs=136.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  333 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~  333 (403)
                      ...+++.++|  +|+.+.+|++++||+.||++.++..|+++.||||+|+|++|+||+..+++.++.+.++..+.++....
T Consensus        14 ~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~~~~~~~~~~~~   93 (182)
T d1h0pa_          14 EIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKL   93 (182)
T ss_dssp             EETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             EECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCCCCccCcccccc
Confidence            5566777777  99999999999999999976443339999999999999999999998888899999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443          334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN  403 (403)
Q Consensus       334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~  403 (403)
                      .|+.+|+++|++.++++++|||||+++++|+||++|+|||||++|||+|++|+.+++++ ++|+++|+|++
T Consensus        94 ~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~  164 (182)
T d1h0pa_          94 KHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAA  164 (182)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEE
T ss_pred             cccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999875 79999999974

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-36  Score=273.08  Aligned_cols=147  Identities=61%  Similarity=0.941  Sum_probs=136.6

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCC---------CCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK---------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN  324 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~---------g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~  324 (403)
                      .+.+++.++|  +|+.+.+|++++||+.||+++.         ++ |+++.||||++++++|+|++....+.++...++.
T Consensus        22 ~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~  100 (195)
T d1ihga2          22 DIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGE  100 (195)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             EECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCCCCCCCccCCCC
Confidence            4556667776  9999999999999999997653         35 9999999999999999999988888888888899


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443          325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN  403 (403)
Q Consensus       325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~  403 (403)
                      ++++|.....|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+.+++++++|+++|+|+|
T Consensus       101 ~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i~I~~  179 (195)
T d1ihga2         101 KFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAE  179 (195)
T ss_dssp             CBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEE
T ss_pred             cccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcCCCeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999975

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=264.86  Aligned_cols=146  Identities=55%  Similarity=0.941  Sum_probs=132.5

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCCC-------ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF-------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~-------~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      ...+++.++|  +|+.+.+|++++||+.||+  .+|       +|+++.||||+++|++|+||+..+.+......++.++
T Consensus        14 ~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~--~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~~~~~~~~   91 (173)
T d1qoia_          14 SIGGQEVGRMKIELFADVVPKTAENFRQFCT--GEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPF   91 (173)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHH--SCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCB
T ss_pred             EECCEeCeEEEEEEcCCCCcHHHHHHHHhhc--ccccccCCCCCcCCcccceeccceeeccCCcccCCcceeecccCCcc
Confidence            4456677776  9999999999999999995  443       5999999999999999999998777777777778888


Q ss_pred             CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +++.....|+++|+|+||+.+|++++|||||++++.|+||++|+|||+|++|||+|++|+.++|+ +++|+++|+|.|
T Consensus        92 ~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~  169 (173)
T d1qoia_          92 ADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQ  169 (173)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             cccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEc
Confidence            88888889999999999999999999999999999999999999999999999999999999985 589999999975

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=262.31  Aligned_cols=139  Identities=45%  Similarity=0.713  Sum_probs=124.2

Q ss_pred             ccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCc
Q psy443          261 TSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPG  339 (403)
Q Consensus       261 p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G  339 (403)
                      ....|+|+.+.+|++++||++||  +.++ |+++.||||+++|++|+||+.. .+.++...++..+++|.. .++|+++|
T Consensus        10 G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~G   85 (159)
T d2ok3a1          10 GDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRG   85 (159)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCCTTCCSCSTT
T ss_pred             eEEEEEEcCCCChHHHHHHHHHH--hhhc-ccceeEecccCCeEEEeCCccc-cCCCCcccCCCccccccccCCCCCCCe
Confidence            33456999999999999999999  6778 9999999999999999999876 444556667888877754 68899999


Q ss_pred             EEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443          340 ILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVCFN  403 (403)
Q Consensus       340 ~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~--~~P~~~i~I~~  403 (403)
                      +||||+.+|++++|||||++++.|+||++|+|||||++|||+|++|+++++++  ++|+.+|+|.+
T Consensus        86 ~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~  151 (159)
T d2ok3a1          86 VVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD  151 (159)
T ss_dssp             EEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEE
T ss_pred             EEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999864  79999999864

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-35  Score=260.28  Aligned_cols=138  Identities=47%  Similarity=0.781  Sum_probs=126.6

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~  340 (403)
                      ...|+|+.+.+|++++||+.||  +.|+ |+|+.||||+++|++|+||+.+ .+.++.+.++..++++.. .+.|.++|+
T Consensus        12 ~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (155)
T d2fu0a1          12 DIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFM   87 (155)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCBTTBCSSSSSE
T ss_pred             EEEEEEcCCCChHHHHHHhhHh--hCCc-cccceeeeeeecceeeccCCCC-CCcCCcccCCCccccccccccccCCccE
Confidence            3445999999999999999999  6788 9999999999999999999976 567778888999988876 578888999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      ++|++.+|++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|+++|+|.+
T Consensus        88 ~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~  151 (155)
T d2fu0a1          88 VSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  151 (155)
T ss_dssp             EEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             EEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEE
Confidence            999999999999999999999999999999999999999999999999985 589999999974

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.2e-35  Score=259.24  Aligned_cols=147  Identities=44%  Similarity=0.701  Sum_probs=133.8

Q ss_pred             eeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-
Q psy443          119 ANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-  197 (403)
Q Consensus       119 ~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-  197 (403)
                      +++|+|++|+|+||||++.||++|+||++||  +.|+ |+++.|||+++++++|+|++.+ .+.++.+.++..++++.. 
T Consensus         3 ~~~i~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~   78 (155)
T d2fu0a1           3 SAIIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFFD   78 (155)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCCCBT
T ss_pred             eEEEEEcccEEEEEEcCCCChHHHHHHhhHh--hCCc-cccceeeeeeecceeeccCCCC-CCcCCcccCCCcccccccc
Confidence            4789999999999999999999999999999  7788 9999999999999999999986 667777788888888765 


Q ss_pred             ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      .+.|.++|+++|+++++++++|||||++++.|+||++|+|||||++|||+|++|+++++ ..++|..+|.|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~  151 (155)
T d2fu0a1          79 HLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  151 (155)
T ss_dssp             TBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             ccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEE
Confidence            57888889999999999999999999999999999999999999999999999999885 6678888776543

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=262.94  Aligned_cols=149  Identities=41%  Similarity=0.710  Sum_probs=136.4

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      ..|.|+|++|+|+||||++.||++|+||++||  +.|| |+++.|||+++++++|+|++.. .+.++...++..+++|. 
T Consensus        12 p~v~~~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~e~~   87 (166)
T d1xwna1          12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH   87 (166)
T ss_dssp             CEEEEEESSCEEEEEECTTTCHHHHHHHHHHH--HHTS-STTCCEEEEETTTEEEECCSTT-TTSSCCCSSCSCCCCCCC
T ss_pred             CEEEEEECceeEEEEEcCCCChHHHHHHHHHH--hcCC-cCceeeeEEcccEEEEeCCCCC-CCCCCccCCCCccccccC
Confidence            57999999999999999999999999999999  7889 9999999999999999999976 67777777788888875 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeeccc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRSD  270 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~d  270 (403)
                      ..+.|+++|+|+|+++++++++|||||++++.++||++|+|||||++|||||++|+++++ ..++|..+|.|...
T Consensus        88 ~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a  162 (166)
T d1xwna1          88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA  162 (166)
T ss_dssp             TTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEE
T ss_pred             CCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEe
Confidence            468899999999999999999999999999999999999999999999999999999885 67788888876553

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=4.3e-35  Score=259.24  Aligned_cols=146  Identities=68%  Similarity=1.084  Sum_probs=136.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||++.||++|+||++||+++.+++|+++.|||++|++++|+|++..+++.++.+.+...+.+|...+.|++
T Consensus        13 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~h~~   92 (162)
T d2cfea1          13 APLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNK   92 (162)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCccccccCCCCCCC
Confidence            47999999999999999999999999777766699999999999999999999988888888888888999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|+..++..++|..+|.|..
T Consensus        93 ~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~I~~  158 (162)
T d2cfea1          93 PGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAK  158 (162)
T ss_dssp             TTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             ceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeEEEe
Confidence            999999999999999999999999999999999999999999999999988888889988886654

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=257.95  Aligned_cols=144  Identities=68%  Similarity=1.120  Sum_probs=133.2

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCC-CcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEK-GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHT  202 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~-g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~  202 (403)
                      +.+|+|+||||.+.||+||+||++||++++ ++ |+++.||||+|++++|+|++....+.++.+.++..++++....+|+
T Consensus        13 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (161)
T d2r99a1          13 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHT   91 (161)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCC
T ss_pred             EeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEeeeEEeeeccCCCCCCCccccCccccccccccccc
Confidence            478999999999999999999999997755 55 9999999999999999999998778888888888888888899999


Q ss_pred             ccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeec
Q psy443          203 GPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLR  268 (403)
Q Consensus       203 ~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~  268 (403)
                      .+|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|+..++..++|..+|.|.
T Consensus        92 ~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~  157 (161)
T d2r99a1          92 GPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA  157 (161)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEE
T ss_pred             cceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999998888888888887654

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=262.50  Aligned_cols=137  Identities=45%  Similarity=0.812  Sum_probs=126.3

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~  340 (403)
                      ...|+|+.+.+|++++||+.||  +.|+ |+++.||||+++|++|+||+.. .+.++...++..+++|. ..+.|+++|+
T Consensus        22 ~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~G~   97 (166)
T d1xwna1          22 IIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGI   97 (166)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHH--HHTS-STTCCEEEEETTTEEEECCSTT-TTSSCCCSSCSCCCCCCCTTCCSCSSSE
T ss_pred             eEEEEEcCCCChHHHHHHHHHH--hcCC-cCceeeeEEcccEEEEeCCCCC-CCCCCccCCCCccccccCCCCCCCCCeE
Confidence            3455999999999999999999  7888 9999999999999999999975 66777888888888885 4688999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      |+|++.+|++++|||||++++.|+||++|+|||+|++|||||++|++++++ +++|+++|+|+
T Consensus        98 lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~  160 (166)
T d1xwna1          98 LAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (166)
T ss_dssp             EEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEE
T ss_pred             EEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEE
Confidence            999999999999999999999999999999999999999999999999985 58999999996

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=6.9e-35  Score=259.63  Aligned_cols=148  Identities=45%  Similarity=0.692  Sum_probs=133.5

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-  196 (403)
                      ..|+|+|++|+|+||||++.||++|+||++||  +.|| |+++.|||+++++++|||++.. ...++.+.+...+++|. 
T Consensus        17 ~~V~l~T~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~g~~~~-~~~~~~~~~~~~~~~e~~   92 (169)
T d2b71a1          17 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEIN   92 (169)
T ss_dssp             CEEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCCC
T ss_pred             cEEEEEeCceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeeccccceeeEecccccc-ccCCCccccccccccccc
Confidence            56999999999999999999999999999999  8899 9999999999999999999877 55566666667777774 


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      ..++|.++|+|+|++++|++++|||||++++.|+||++|+|||||++|||+|++|+++++ ..++|..+|+|..
T Consensus        93 ~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~  166 (169)
T d2b71a1          93 KELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  166 (169)
T ss_dssp             TTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             cccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            468899999999999999999999999999999999999999999999999999999875 5678888886654

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=6.6e-35  Score=259.76  Aligned_cols=141  Identities=46%  Similarity=0.745  Sum_probs=126.5

Q ss_pred             CcccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCC
Q psy443          259 GKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTG  337 (403)
Q Consensus       259 ~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~  337 (403)
                      +.....|+|+.+.+|++++||+.||  +.|+ |+++.|||++++|++||||+.+ .+.++.+..+..+++|.. .++|.+
T Consensus        24 ~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~g~~~~-~~~~~~~~~~~~~~~e~~~~l~h~~   99 (169)
T d2b71a1          24 NLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTG   99 (169)
T ss_dssp             TTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCCCTTCCCCS
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeeccccceeeEecccccc-ccCCCccccccccccccccccCCCC
Confidence            3444556999999999999999999  7889 9999999999999999999876 445566777777877754 688999


Q ss_pred             CcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443          338 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN  403 (403)
Q Consensus       338 ~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~  403 (403)
                      +|+|+|++.+|++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|+.+|+|+.
T Consensus       100 ~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~  166 (169)
T d2b71a1         100 AGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  166 (169)
T ss_dssp             TTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             cEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999986 589999999973

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=6.5e-35  Score=263.68  Aligned_cols=148  Identities=52%  Similarity=0.884  Sum_probs=135.4

Q ss_pred             CCCCccccee--eeccccCCcchhhHHHhhcCCCC-----CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443          256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  328 (403)
Q Consensus       256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g-----~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~  328 (403)
                      ...+++.++|  +|+.+.+|++|+||++||+++.+     ++|+++.|||+++++++|+||+....+.+....++..+++
T Consensus        24 ~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~  103 (186)
T d1z81a1          24 NLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDD  103 (186)
T ss_dssp             EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCC
T ss_pred             EECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCcccccccCCcccc
Confidence            4566777777  99999999999999999977542     2499999999999999999999887888888888999999


Q ss_pred             CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEec--HHHHHHHHhCCCC--CCCccccEEEeC
Q psy443          329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG--LDVVKKLESMGSQ--SGKTSKKIVCFN  403 (403)
Q Consensus       329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG--~dvl~~i~~~~t~--~~~P~~~i~I~~  403 (403)
                      +.....|+++|+++|++.+|++++|||||+++++|+||++|+|||||++|  ||+|++|+.+++.  +++|+++|+|+|
T Consensus       104 ~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~  182 (186)
T d1z81a1         104 ENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE  182 (186)
T ss_dssp             CCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEE
T ss_pred             cccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEe
Confidence            99999999999999999999999999999999999999999999999998  9999999999885  489999999985

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-35  Score=260.75  Aligned_cols=139  Identities=48%  Similarity=0.807  Sum_probs=127.3

Q ss_pred             cccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCC
Q psy443          260 KTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGP  338 (403)
Q Consensus       260 ~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~  338 (403)
                      .....|+|+.+.+|++|+||+.||  +.++ |+++.||||+|+|++|+||+.. .+.++.+.++.++.+|.. .++|+.+
T Consensus         9 ~G~i~IeL~~~~aP~tv~nF~~L~--~~~~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~E~~~~l~~~~~   84 (178)
T d1zkca1           9 KGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGR   84 (178)
T ss_dssp             TEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTS-SSSCCCBTTBSCBCCCCCTTCCSCST
T ss_pred             CEEEEEEEcCCCChHHHHHHHHHH--hcCC-cCceEeeeccceeEEecCCccC-CCCCCcccCCCCcCCccccccCCCCC
Confidence            334456999999999999999999  7788 9999999999999999999876 677888888999988864 6889999


Q ss_pred             cEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC--CCCccccEEEe
Q psy443          339 GILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVCF  402 (403)
Q Consensus       339 G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~--~~~P~~~i~I~  402 (403)
                      |+|||++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++  +++|+++|+|.
T Consensus        85 G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~  150 (178)
T d1zkca1          85 GILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRID  150 (178)
T ss_dssp             TEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEE
T ss_pred             eEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999885  58999999986

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=258.80  Aligned_cols=145  Identities=46%  Similarity=0.787  Sum_probs=131.9

Q ss_pred             eeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-
Q psy443          119 ANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-  197 (403)
Q Consensus       119 ~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-  197 (403)
                      .|.|+|++|+|+||||++.||++|+||++||  +.++ |+++.|||+++++++|+|++.. ++.++...++..+++|.. 
T Consensus         2 ~v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~--~~~~-Y~g~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~E~~~   77 (178)
T d1zkca1           2 YVRLHTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKPFKDEFRP   77 (178)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTS-SSSCCCBTTBSCBCCCCCT
T ss_pred             EEEEEeCCEEEEEEEcCCCChHHHHHHHHHH--hcCC-cCceEeeeccceeEEecCCccC-CCCCCcccCCCCcCCcccc
Confidence            5899999999999999999999999999999  7888 9999999999999999999877 777888788888888854 


Q ss_pred             ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CCCcccceeee
Q psy443          198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVL  267 (403)
Q Consensus       198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~~~p~~~I~L  267 (403)
                      .++|+.+|+|+|+++++++++|||||++.++++||++|+|||||++|||+|++|++.++  ..++|..+|.|
T Consensus        78 ~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I  149 (178)
T d1zkca1          78 NLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI  149 (178)
T ss_dssp             TCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEE
T ss_pred             ccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEE
Confidence            68898999999999999999999999999999999999999999999999999999875  35677666533

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=3e-34  Score=256.19  Aligned_cols=144  Identities=70%  Similarity=1.067  Sum_probs=134.4

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCC--------CCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGE--------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE  195 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~--------~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e  195 (403)
                      |++|+|+||||.+.||+||+||++||+++        .++ |+++.||||++++++|+|++..+++.++...++..+++|
T Consensus        15 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~e   93 (172)
T d2igva1          15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDE   93 (172)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC
T ss_pred             EeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCCCCcccCCCccCcc
Confidence            57999999999999999999999999763        457 999999999999999999999888888888888999999


Q ss_pred             CCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeec
Q psy443          196 NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLR  268 (403)
Q Consensus       196 ~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~  268 (403)
                      .....|+.+|+|+|+++++++++|||||++.++|+||++|+|||+|++|||+|++|+..++..++|..+|.|.
T Consensus        94 ~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~  166 (172)
T d2igva1          94 NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIA  166 (172)
T ss_dssp             CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEE
T ss_pred             ccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999999888888888887654

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=253.04  Aligned_cols=145  Identities=77%  Similarity=1.239  Sum_probs=133.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      +..|+|+||||++.||++|+||++||++.++..|+++.|||+++++++|+|++....+.++...++..++++.....|+.
T Consensus        14 ~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (164)
T d2z6wa1          14 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVG   93 (164)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCcCCccccccccCC
Confidence            37899999999999999999999999654443499999999999999999999887888888888888888888899999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeec
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLR  268 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~  268 (403)
                      +|+|+||++++++++|||||++.++|+||++|+|||+|++|||+|++|+.+++..++|..+|.|.
T Consensus        94 ~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~  158 (164)
T d2z6wa1          94 PGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT  158 (164)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEE
T ss_pred             ccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999998888998887654

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=9e-35  Score=259.38  Aligned_cols=144  Identities=60%  Similarity=1.005  Sum_probs=102.8

Q ss_pred             ccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy443          260 KTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  337 (403)
Q Consensus       260 ~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~  337 (403)
                      ...++|  +|+.+.+|++|+||++||+++.+.+|+++.||||+|+|++|+||+..+++.++...++..+.++...+.|++
T Consensus        18 T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (171)
T d2c3ba1          18 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDK   97 (171)
T ss_dssp             CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------------CHHHHH
T ss_pred             ceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcCCCCccccccccccCCC
Confidence            344554  999999999999999999765544699999999999999999999988888888888888888888999999


Q ss_pred             CcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEe--cHHHHHHHHhCCCCCC--CccccEEEeC
Q psy443          338 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKKIVCFN  403 (403)
Q Consensus       338 ~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vie--G~dvl~~i~~~~t~~~--~P~~~i~I~~  403 (403)
                      +|+||||+.+|++++|||||++++.|+||++|+|||||+|  |||||++|++++|.++  +|..+|+|+|
T Consensus        98 ~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~  167 (171)
T d2c3ba1          98 KGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVN  167 (171)
T ss_dssp             TCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEE
T ss_pred             CceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEe
Confidence            9999999999999999999999999999999999999995  9999999999999874  7899999985

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=5.4e-34  Score=254.01  Aligned_cols=145  Identities=58%  Similarity=1.014  Sum_probs=134.0

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCC-------CCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGE-------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~-------~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      |+.|+|+||||++.||++|+||++||+++       .++ |+++.|||+++++++|+|+...+++.++...++..++++.
T Consensus        15 t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1qnga_          15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDEN   93 (170)
T ss_dssp             SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCCcccCCCcccccc
Confidence            58999999999999999999999999653       467 9999999999999999999998888888888888899998


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      ..+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|+..++..++|..+|.|..
T Consensus        94 ~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~  166 (170)
T d1qnga_          94 FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             ccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999998888888888876543

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3e-33  Score=251.86  Aligned_cols=145  Identities=55%  Similarity=0.885  Sum_probs=132.6

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      |++|+|+||||.+.||++|+||++||++.++.+|+++.|||+++++++|+|++...++.++...++..++++.....|+.
T Consensus        19 ~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d2rmca_          19 KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYG   98 (182)
T ss_dssp             EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTBSCBCCCCCCSCCCS
T ss_pred             EECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCCcCCcccccccccccCC
Confidence            68999999999999999999999999775544499999999999999999999887888888888888999999999999


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~  268 (403)
                      +|+|+|++.++++++|||||++++.++||++|+|||||++|||+|++|+..++ ..++|..+|.|.
T Consensus        99 ~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~  164 (182)
T d2rmca_          99 IGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIV  164 (182)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEE
T ss_pred             CccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999885 566787777543

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=248.17  Aligned_cols=148  Identities=42%  Similarity=0.650  Sum_probs=128.1

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccC-CC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED-EN  196 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~-e~  196 (403)
                      .+++|+|++|+|+||||.+.||++|+||++||  +.|+ |+++.|||+++++++|+|++.+....+.... ...+.. ..
T Consensus        10 ~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~-~~~~~~~~~   85 (164)
T d2a2na1          10 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIW-GGEFEDEFH   85 (164)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTT-SSCBCCCCC
T ss_pred             CEEEEEeceeEEEEEEcCCCChHHHHHHHHHH--hCCC-cccceeeEEeeeeeEeecccccccCCCceee-ecccccccc
Confidence            57999999999999999999999999999999  8899 9999999999999999999877433333322 334444 35


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC--CCcccceeeecc
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVLRS  269 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~--~~~p~~~I~L~~  269 (403)
                      ..+.|+++|+++|++.++++++|||||++++.|+||++|+|||+|++||++|++|+++++.  .++|..+|.|..
T Consensus        86 ~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~  160 (164)
T d2a2na1          86 STLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  160 (164)
T ss_dssp             TTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             cccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEE
Confidence            6788999999999999999999999999999999999999999999999999999988763  468888776543

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=249.22  Aligned_cols=138  Identities=44%  Similarity=0.692  Sum_probs=120.4

Q ss_pred             cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC-CCCCCCCCCCcE
Q psy443          262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED-ENFTLKHTGPGI  340 (403)
Q Consensus       262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~-e~~~~~h~~~G~  340 (403)
                      ...|+|+.+.+|.+++||+.||  +.++ |+++.|||++++|++|+|++.+....+.... ...+.+ +...++|+++|+
T Consensus        20 ~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   95 (164)
T d2a2na1          20 DIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIW-GGEFEDEFHSTLRHDRPYT   95 (164)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTT-SSCBCCCCCTTCCSCSSSE
T ss_pred             EEEEEEcCCCChHHHHHHHHHH--hCCC-cccceeeEEeeeeeEeecccccccCCCceee-ecccccccccccccCccce
Confidence            3445999999999999999999  7888 9999999999999999999876444333333 334444 456788999999


Q ss_pred             EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC--CCCccccEEEeC
Q psy443          341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~--~~~P~~~i~I~~  403 (403)
                      ++|++.++++++|||||++++.|+||++|+|||+|++|||||++|++++++  +++|+++|+|.+
T Consensus        96 l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~  160 (164)
T d2a2na1          96 LSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  160 (164)
T ss_dssp             EEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             eehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEE
Confidence            999999999999999999999999999999999999999999999999995  489999999974

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.3e-33  Score=247.91  Aligned_cols=144  Identities=58%  Similarity=0.901  Sum_probs=127.8

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG  203 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~  203 (403)
                      +++|+|+||||.+.||++|+||++||++..+.+|+++.|||+++++++|+|++...++.++...++..++++.. ..|+.
T Consensus        17 ~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   95 (166)
T d1xo7a_          17 EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENL-KIKHF   95 (166)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCC-CSCCC
T ss_pred             EECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCCCcccccccc-ccccc
Confidence            58999999999999999999999999776666699999999999999999999987888887777666666655 44556


Q ss_pred             cceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443          204 PGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       204 ~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~  268 (403)
                      +|+|+|+++++++++|||||+++++++||++|+|||||++||++|++|++.++ ..++|..+|.|.
T Consensus        96 ~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~  161 (166)
T d1xo7a_          96 VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKIN  161 (166)
T ss_dssp             TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEE
T ss_pred             ccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999875 556888777654

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=5.6e-34  Score=254.18  Aligned_cols=158  Identities=55%  Similarity=0.909  Sum_probs=108.9

Q ss_pred             cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCc
Q psy443          106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK  185 (403)
Q Consensus       106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~  185 (403)
                      +|.|.++.+.    ...+|++|+|+||||.+.||++|+||++||++..+.+|+++.|||++|++++|+|++..+++.++.
T Consensus         4 v~~di~~~~~----~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~   79 (171)
T d2c3ba1           4 VFFDVEYAPV----GTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR   79 (171)
T ss_dssp             EEEEEEECCT----TCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------
T ss_pred             EEEeeecccc----ccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCC
Confidence            4555555544    456699999999999999999999999999654433589999999999999999999887888887


Q ss_pred             ccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee--cccccccccccCCCCC--cc
Q psy443          186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KT  261 (403)
Q Consensus       186 ~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie--G~dvl~~i~~~~t~~~--~p  261 (403)
                      ..++..+.++...+.|+++|+|+||++++++++|||||++.+.|+||++|+|||||++  ||++|++|+.+++..+  .|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p  159 (171)
T d2c3ba1          80 SIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRS  159 (171)
T ss_dssp             ------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCS
T ss_pred             cCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCC
Confidence            7777888888889999999999999999999999999999999999999999999995  9999999998886544  45


Q ss_pred             cceeee
Q psy443          262 SKKIVL  267 (403)
Q Consensus       262 ~~~I~L  267 (403)
                      ..++.|
T Consensus       160 ~~~v~I  165 (171)
T d2c3ba1         160 NTRPKI  165 (171)
T ss_dssp             SSCCEE
T ss_pred             CCCEEE
Confidence            555544

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=7.1e-33  Score=252.01  Aligned_cols=145  Identities=59%  Similarity=0.901  Sum_probs=132.6

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCC---------CCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGE---------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED  194 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~---------~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~  194 (403)
                      +.+|+|+||||.+.||++|+||++||+++         .++ |+++.|||+++++++|+|++....+.++...++..+.+
T Consensus        26 ~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~  104 (195)
T d1ihga2          26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFED  104 (195)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCC
T ss_pred             EeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCCCCCCCccCCCCcccc
Confidence            36899999999999999999999999753         345 99999999999999999999887888888888888999


Q ss_pred             CCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443          195 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS  269 (403)
Q Consensus       195 e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~  269 (403)
                      +.....|+.+|+|+|+++++++++|||||+++++++||++|+|||||++|||||++|+..++..++|..+|.|..
T Consensus       105 ~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i~I~~  179 (195)
T d1ihga2         105 ENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAE  179 (195)
T ss_dssp             CCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEE
T ss_pred             cccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999998888888877775443

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=4.5e-33  Score=247.05  Aligned_cols=145  Identities=31%  Similarity=0.494  Sum_probs=124.8

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF  197 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~  197 (403)
                      ..|+|+|+.|+|+||||++.||++|+||++||  +.+| |+++.|||++++|++|+|++....+.+.   ++..+++|..
T Consensus         5 ~~V~l~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~~~---~~~~~~~e~~   78 (166)
T d1v9ta_           5 PHVLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKK---PNPPIKNEAD   78 (166)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCCBCC---CCCCBCCCGG
T ss_pred             CEEEEEECCeeEEEEEeCCCChHHHHHHHHHh--hCCc-cccceeeEEEEEeecccCCcCCcccccC---CCCCcccccc
Confidence            56999999999999999999999999999999  7888 9999999999999999999877544443   3677888877


Q ss_pred             ccCCCccceeeecc-cCCCCCcceeEEEeccCcCCCCc-----eeEEEeEeecccccccccccCCCC-----Ccccceee
Q psy443          198 TLKHTGPGILSMAN-AGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIV  266 (403)
Q Consensus       198 ~~~h~~~G~ls~a~-~~~~~~~SqFfI~l~~~~~Ld~~-----~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~  266 (403)
                      ...++.+|.|+|++ .++++++|||||++.+.++||..     |+|||+|++|||+|++|+++++..     ++|..+|.
T Consensus        79 ~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~  158 (166)
T d1v9ta_          79 NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV  158 (166)
T ss_dssp             GSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCB
T ss_pred             ccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeE
Confidence            76677799999998 55899999999999999998864     799999999999999999876532     35666665


Q ss_pred             ec
Q psy443          267 LR  268 (403)
Q Consensus       267 L~  268 (403)
                      |.
T Consensus       159 I~  160 (166)
T d1v9ta_         159 IL  160 (166)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.98  E-value=1.2e-32  Score=245.94  Aligned_cols=144  Identities=51%  Similarity=0.837  Sum_probs=130.9

Q ss_pred             eeeeEEEEEcCCCChhhHHhHHHhhcCC---------CCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCC
Q psy443          125 YRKGFKGRLRSDVVPKTAENFRALCTGE---------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE  195 (403)
Q Consensus       125 ~~G~i~ieL~~d~aP~~~~nF~~L~~g~---------~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e  195 (403)
                      ++|+|+||||+|.||++|+||++||+++         .++ |+++.||||++++++|+|+...+++.++.+.++....++
T Consensus        16 ~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~   94 (174)
T d1a33a_          16 LAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE   94 (174)
T ss_dssp             EEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCC
T ss_pred             eceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCCCCCCccCcccccc
Confidence            6899999999999999999999999763         356 999999999999999999998877888777777777788


Q ss_pred             CCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443          196 NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS  269 (403)
Q Consensus       196 ~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~  269 (403)
                      .....|+++|+++|++.++++++|||||+++++|+||++|+|||||++|||||++|+.+++ ..++|..+|.|..
T Consensus        95 ~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~  169 (174)
T d1a33a_          95 EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN  169 (174)
T ss_dssp             CSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             ccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            8899999999999999999999999999999999999999999999999999999999885 5668888886654

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.98  E-value=9.5e-33  Score=248.54  Aligned_cols=144  Identities=55%  Similarity=0.865  Sum_probs=131.3

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCC-CcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEK-GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHT  202 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~-g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~  202 (403)
                      |++|+|+||||.+.||++|+||++||++.+ ++ |+++.|||++|+|++|+|++..+++.++...++..+.++.....|+
T Consensus        18 ~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~-y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~   96 (182)
T d1h0pa_          18 KPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHY   96 (182)
T ss_dssp             EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-STTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCSCCC
T ss_pred             EECeEEEEEECCCCChHHHHHHHHHHHhcccCC-cCCceEEEEEecceEEcCCCCCCCCCCCCCCCCCccCccccccccc
Confidence            589999999999999999999999996533 35 9999999999999999999998888888888888889888899999


Q ss_pred             ccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443          203 GPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       203 ~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~  268 (403)
                      .+|+++|++.++++++|||||++.++|+||++|+|||||++||++|++|++.++ ..++|..+|.|.
T Consensus        97 ~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~  163 (182)
T d1h0pa_          97 GAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIA  163 (182)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEE
T ss_pred             CCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999885 445777776444

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=3.8e-33  Score=247.08  Aligned_cols=143  Identities=27%  Similarity=0.474  Sum_probs=121.4

Q ss_pred             eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443          120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL  199 (403)
Q Consensus       120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~  199 (403)
                      |+|+|+.|+|+||||++.||+||+||++||  +.|+ |+++.|||++++|++|+|++....+.++   ++.++++|....
T Consensus         2 V~l~T~~G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~~iq~G~~~~~~~~~~---~~~~~~~e~~~~   75 (164)
T d1lopa_           2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKA---TKEPIKNEANNG   75 (164)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTEECC---CCCCBCCCCCSS
T ss_pred             EEEEeCCeEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCceeeeeccccCCcCCc---cCCCcccccccc
Confidence            789999999999999999999999999999  8899 9999999999999999999866433322   356788886666


Q ss_pred             CCCccceeeeccc-CCCCCcceeEEEeccC--------cCCCCceeEEEeEeecccccccccccCCCC-----Cccccee
Q psy443          200 KHTGPGILSMANA-GPNTNGSQFFITTVKT--------AWLDNRHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKI  265 (403)
Q Consensus       200 ~h~~~G~ls~a~~-~~~~~~SqFfI~l~~~--------~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I  265 (403)
                      .++.+|.|+|+++ ++++++|||||++.+.        |++|++|+|||+|++||++|++|+.+++..     +.|..+|
T Consensus        76 ~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v  155 (164)
T d1lopa_          76 LKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDV  155 (164)
T ss_dssp             CCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCC
T ss_pred             ccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCe
Confidence            6667999999975 6899999999999865        788999999999999999999999877532     3566666


Q ss_pred             eec
Q psy443          266 VLR  268 (403)
Q Consensus       266 ~L~  268 (403)
                      .|.
T Consensus       156 ~I~  158 (164)
T d1lopa_         156 IIE  158 (164)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.5e-32  Score=244.69  Aligned_cols=146  Identities=43%  Similarity=0.700  Sum_probs=125.7

Q ss_pred             eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-------------cccCCCEEEeeeCCeEEEeCcCCCCCCCCC
Q psy443          118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKG-------------FGFKDSTFHRVIPNFMCQGGDFTNHNGTGG  184 (403)
Q Consensus       118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-------------~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~  184 (403)
                      ..++|+|++|+|+||||++.||++|+||++||++..+             + |+++.|||+++++++|||++.. .+.++
T Consensus         4 ~~~ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~g~~~~-~~~~~   81 (171)
T d1w74a_           4 ATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTG-TGRGG   81 (171)
T ss_dssp             EEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTS-SSSCC
T ss_pred             EEEEEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCce-ECCeecccccCCceeEcccccC-CCCCC
Confidence            6899999999999999999999999999999965432             5 9999999999999999999876 34343


Q ss_pred             cccCCCcccCC-CCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEe--ecccccccccccCC-CCCc
Q psy443          185 KSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGS-QSGK  260 (403)
Q Consensus       185 ~~~~~~~~~~e-~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVi--eG~dvl~~i~~~~t-~~~~  260 (403)
                      .   ...+.+| ...+.|+++|+|+|++.++++++|||||++++.|+||++|+|||||+  ||||||++|++.++ ..++
T Consensus        82 ~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~  158 (171)
T d1w74a_          82 P---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDR  158 (171)
T ss_dssp             S---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSC
T ss_pred             c---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCc
Confidence            3   2334444 45788999999999999999999999999999999999999999999  59999999999885 5678


Q ss_pred             ccceeeec
Q psy443          261 TSKKIVLR  268 (403)
Q Consensus       261 p~~~I~L~  268 (403)
                      |..+|.|.
T Consensus       159 P~~~i~I~  166 (171)
T d1w74a_         159 PTDPVVIE  166 (171)
T ss_dssp             BSSCCEEE
T ss_pred             cCCCcEEE
Confidence            88777554

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=244.98  Aligned_cols=143  Identities=55%  Similarity=0.927  Sum_probs=128.1

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc-------ccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKGF-------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN  196 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~-------~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~  196 (403)
                      +.+|+|+||||++.||++|+||++||  +.+|       +|+++.|||+++++++|+|++..+.+..........+.++.
T Consensus        18 ~~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~~~~~~~~~~~~   95 (173)
T d1qoia_          18 QEVGRMKIELFADVVPKTAENFRQFC--TGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADEN   95 (173)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHH--HSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCC
T ss_pred             EeCeEEEEEEcCCCCcHHHHHHHHhh--cccccccCCCCCcCCcccceeccceeeccCCcccCCcceeecccCCcccccc
Confidence            47899999999999999999999999  5555       48999999999999999999987666666666667788888


Q ss_pred             CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443          197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR  268 (403)
Q Consensus       197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~  268 (403)
                      ....|+++|+|+|+++++++++|||||++++.|+||++|+|||+|++|||+|++|+.+++ ..++|..+|.|.
T Consensus        96 ~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~  168 (173)
T d1qoia_          96 FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVIS  168 (173)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEE
T ss_pred             cccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEE
Confidence            888899999999999999999999999999999999999999999999999999999886 567888877554

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.7e-32  Score=244.37  Aligned_cols=141  Identities=43%  Similarity=0.699  Sum_probs=118.5

Q ss_pred             CcccceeeeccccCCcchhhHHHhhcCCCCC------------ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443          259 GKTSKKIVLRSDVVPKTAENFRALCTGEKGF------------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF  326 (403)
Q Consensus       259 ~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~------------~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~  326 (403)
                      ......|+|+.+.+|++|+||++||++.+++            .|+++.|||+++++++|+|++.. .+.++.   ...+
T Consensus        11 ~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~~   86 (171)
T d1w74a_          11 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYKF   86 (171)
T ss_dssp             TTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCCB
T ss_pred             CCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---cccc
Confidence            3444455999999999999999999765321            29999999999999999999875 222222   2234


Q ss_pred             CCC-CCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE--ecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443          327 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQ-SGKTSKKIVCF  402 (403)
Q Consensus       327 ~~e-~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi--eG~dvl~~i~~~~t~-~~~P~~~i~I~  402 (403)
                      .+| ....+|+++|+|+|++.+|++++|||||++++.|+||++|+|||||+  ||||||++|++++++ +++|+++|+|.
T Consensus        87 ~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~  166 (171)
T d1w74a_          87 ADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE  166 (171)
T ss_dssp             CCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEE
T ss_pred             ccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEE
Confidence            444 45788999999999999999999999999999999999999999999  599999999999986 48999999996


Q ss_pred             C
Q psy443          403 N  403 (403)
Q Consensus       403 ~  403 (403)
                      +
T Consensus       167 ~  167 (171)
T d1w74a_         167 S  167 (171)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.6e-33  Score=245.23  Aligned_cols=137  Identities=33%  Similarity=0.553  Sum_probs=119.1

Q ss_pred             ccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcE
Q psy443          261 TSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGI  340 (403)
Q Consensus       261 p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~  340 (403)
                      ....|+|+.+.||++|+||+.||  +.+| |+|+.||||+++|++|+|++....+.+   .++.++++|.....|+.+|.
T Consensus        14 G~i~ieL~~~~aP~tv~nF~~L~--~~~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~~~~~rg~   87 (166)
T d1v9ta_          14 GNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQK---KPNPPIKNEADNGLRNTRGT   87 (166)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCCBC---CCCCCBCCCGGGSCCCCTTE
T ss_pred             eeEEEEEeCCCChHHHHHHHHHh--hCCc-cccceeeEEEEEeecccCCcCCccccc---CCCCCccccccccccccCCE
Confidence            34456999999999999999999  6788 999999999999999999987654443   45678888887766777999


Q ss_pred             EEEec-CCCCCCcceEEEEecCCCCCCCC-----ceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443          341 LSMAN-AGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN  403 (403)
Q Consensus       341 lsma~-~g~~s~gSqFfItl~~~~~Ld~~-----~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~  403 (403)
                      |+|++ .++++++|||||++++.|+||+.     |+|||+|+||||+|++|+++++++     ++|+++|+|.+
T Consensus        88 v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  161 (166)
T d1v9ta_          88 IAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS  161 (166)
T ss_dssp             EEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEE
T ss_pred             EEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeEEEE
Confidence            99988 55999999999999999999864     899999999999999999998854     48999999974

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-32  Score=243.31  Aligned_cols=136  Identities=29%  Similarity=0.479  Sum_probs=116.7

Q ss_pred             ccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcE
Q psy443          261 TSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGI  340 (403)
Q Consensus       261 p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~  340 (403)
                      ....|+|+.+.+|++++||++||  +.|+ |+|+.||||+++|++|+||+....+.   ..++.++++|.....++.+|.
T Consensus         9 G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~~iq~G~~~~~~~~---~~~~~~~~~e~~~~~~h~~g~   82 (164)
T d1lopa_           9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNTRGT   82 (164)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTEE---CCCCCCBCCCCCSSCCCCTTE
T ss_pred             eEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCceeeeeccccCCcC---CccCCCccccccccccceeeE
Confidence            34456999999999999999999  7888 99999999999999999998653332   234677888876666667899


Q ss_pred             EEEecC-CCCCCcceEEEEecCC--------CCCCCCceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443          341 LSMANA-GPNTNGSQFFITTVKT--------AWLDNRHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF  402 (403)
Q Consensus       341 lsma~~-g~~s~gSqFfItl~~~--------~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~  402 (403)
                      |+|++. +|++++|||||++++.        |+||++|+|||+|++|||||++|+++++++     ++|+++|+|.
T Consensus        83 l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T d1lopa_          83 LAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             EEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             EEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEE
Confidence            999975 6999999999999875        789999999999999999999999999853     4999999986

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=9.7e-32  Score=242.70  Aligned_cols=145  Identities=54%  Similarity=0.906  Sum_probs=129.8

Q ss_pred             EeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-----cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443          124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT  198 (403)
Q Consensus       124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-----~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~  198 (403)
                      +.+|+|+||||+|.||++|+||++||+++.+     ++|+++.|||+++++++|+|++....+.+.....+..++++...
T Consensus        28 ~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~  107 (186)
T d1z81a1          28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFD  107 (186)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCCCC
T ss_pred             EeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCcccccccCCcccccccc
Confidence            3689999999999999999999999965331     23999999999999999999998877878888888889999999


Q ss_pred             cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeec--ccccccccccCC--CCCcccceeeec
Q psy443          199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG--LDVVKKLESMGS--QSGKTSKKIVLR  268 (403)
Q Consensus       199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG--~dvl~~i~~~~t--~~~~p~~~I~L~  268 (403)
                      ..|+++|+++|++.++++++|||||+++++|+||++|+|||||++|  ||+|++|+.+++  ..++|..+|.|.
T Consensus       108 ~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~  181 (186)
T d1z81a1         108 IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVV  181 (186)
T ss_dssp             SCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEE
T ss_pred             cccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEE
Confidence            9999999999999999999999999999999999999999999999  999999998775  356788777554