Psyllid ID: psy4453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEEEc
Coil and Loop (DISEMBL)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQkefvahpnvqqMLDCIwigdwidwekysqpykFLIILSRIFLLPWITIVTLCLqkssygrfysiPVNIMINAMASYCIFLFLLWhqsnqdknfvlprtnliclg
Flexible Loop (DISEMBL)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIvlkrrkgtalmksrfkYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Low Complexity Region (SEG)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Disordered region (IsUnstruct)
*VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLIC**
Disordered Region (DISOPRED)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLIC**
Disordered Region (DISEMBL)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Disordered Region (DISPRO)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKNFVLPRTNLICLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9QX29	975	Short transient receptor	yes	N/A	0.791	0.151	0.370	2e-17
Q9UL62	973	Short transient receptor	yes	N/A	0.791	0.152	0.370	2e-17
O62852	974	Short transient receptor	yes	N/A	0.791	0.151	0.370	2e-17
P79100	979	Short transient receptor	no	N/A	0.754	0.144	0.363	2e-15
Q9QUQ5	974	Short transient receptor	no	N/A	0.754	0.144	0.363	2e-15
O35119	977	Short transient receptor	no	N/A	0.754	0.144	0.363	2e-15
Q9UBN4	977	Short transient receptor	no	N/A	0.754	0.144	0.363	3e-15
Q61143	930	Short transient receptor	no	N/A	0.786	0.158	0.337	7e-15
Q9Y210	931	Short transient receptor	no	N/A	0.791	0.158	0.326	2e-13
P48995	793	Short transient receptor	no	N/A	0.759	0.179	0.297	4e-13

>sp|Q9QX29|TRPC5_MOUSE Short transient receptor potential channel 5 OS=Mus musculus GN=Trpc5 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKY---PLL 75
           S +E  F + YEEL  + K F  DL+D  R + E+EI+L  R   +      KY     L
Sbjct: 231 SKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKL 290

Query: 76  MVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLC 135
            VA+ Y QKEFVA PN QQ+L  +W   +  W +     K L  ++  FL P ++I  L 
Sbjct: 291 KVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLI 350

Query: 136 LQKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
             +S+ G F   P    I   ASY  FLF+L
Sbjct: 351 SPRSNLGLFIKKPFIKFICHTASYLTFLFML 381

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion.
Mus musculus (taxid: 10090)

>sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKY---PLL 75
           S +E  F + YEEL  + K F  DL+D  R + E+EI+L  R   +      KY     L
Sbjct: 231 SKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKL 290

Query: 76  MVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLC 135
            VA+ Y QKEFVA PN QQ+L  +W   +  W +     K L  ++  FL P ++I  L 
Sbjct: 291 KVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLI 350

Query: 136 LQKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
             +S+ G F   P    I   ASY  FLF+L
Sbjct: 351 SPRSNLGLFIKKPFIKFICHTASYLTFLFML 381

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|O62852|TRPC5_RABIT Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKY---PLL 75
           S +E  F + YEEL  + K F  DL+D  R + E+EI+L  R   +      KY     L
Sbjct: 231 SKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKL 290

Query: 76  MVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLC 135
            VA+ Y QKEFVA PN QQ+L  +W   +  W +     K L  ++  FL P ++I  L 
Sbjct: 291 KVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLI 350

Query: 136 LQKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
             +S+ G F   P    I   ASY  FLF+L
Sbjct: 351 SPRSNLGLFIKKPFIKFICHTASYLTFLFML 381

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion.

Oryctolagus cuniculus (taxid: 9986)

>sp|P79100|TRPC4_BOVIN Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
           S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct: 231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLLEEQSGNDLARLK 290

Query: 77  VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
           +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct: 291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIVGLLFPVFSVCYLIA 350

Query: 137 QKSSYGRFYSIPVNIMINAMASY 159
            KS  G F   P    I   ASY
Sbjct: 351 PKSPLGLFIRKPFIKFICHTASY 373

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion. Acts as a cell-cell contact-dependent endothelial calcium entry channel.

Bos taurus (taxid: 9913)

>sp|Q9QUQ5|TRPC4_MOUSE Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
           S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct: 231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query: 77  VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
           +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct: 291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query: 137 QKSSYGRFYSIPVNIMINAMASY 159
            KS  G F   P    I   ASY
Sbjct: 351 PKSPLGLFIRKPFIKFICHTASY 373

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion. Trpc4 deficient mice lack a store-operated calcium entry in endothelial cells.

Mus musculus (taxid: 10090)

>sp|O35119|TRPC4_RAT Short transient receptor potential channel 4 OS=Rattus norvegicus GN=Trpc4 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
           S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct: 231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query: 77  VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
           +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct: 291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query: 137 QKSSYGRFYSIPVNIMINAMASY 159
            KS  G F   P    I   ASY
Sbjct: 351 PKSPLGLFIRKPFIKFICHTASY 373

Thought to form non-selective a receptor-activated calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.

Rattus norvegicus (taxid: 10116)

>sp|Q9UBN4|TRPC4_HUMAN Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
           S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct: 231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query: 77  VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
           +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct: 291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query: 137 QKSSYGRFYSIPVNIMINAMASY 159
            KS  G F   P    I   ASY
Sbjct: 351 PKSPLGLFIRKPFIKFICHTASY 373

Form a receptor-activated non-selective calcium permeant cation channel. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Probably operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Mediates cation entry, with an enhanced permeability to barium over calcium. May also be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|Q61143|TRPC6_MOUSE Short transient receptor potential channel 6 OS=Mus musculus GN=Trpc6 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYP---LL 75
           ++IE  F + Y +L  + K F V L+D CR+  EVE +L     T      F  P    L
Sbjct: 307 ANIEKEFKNDYRKLSMQCKDFVVGLLDLCRNTEEVEAILNGDAETR-QPGDFGRPNLSRL 365

Query: 76  MVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLC 135
            +A+ Y  K+FVAHPN QQ L  IW  +     + +   KFL++L+    LP++ ++  C
Sbjct: 366 KLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFLALIYWC 425

Query: 136 LQKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              S  G+    P    +   AS+ IFL LL
Sbjct: 426 APCSKMGKILRGPFMKFVAHAASFTIFLGLL 456

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Activated by diacylglycerol (DAG) in a membrane-delimited fashion, independently of protein kinase C. Seems not to be activated by intracellular calcium store depletion.

Mus musculus (taxid: 10090)

>sp|Q9Y210|TRPC6_HUMAN Short transient receptor potential channel 6 OS=Homo sapiens GN=TRPC6 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGT--ALMKSRFKYPLLM 76
           ++IE  F + Y++L  + K F V L+D CR+  EVE +L     T  +    R     L 
Sbjct: 308 ANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVETLQSGDHGRPNLSRLK 367

Query: 77  VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
           +A+ Y  K+FVAHPN QQ L  IW  +     + +   KFL++L+    LP++ ++    
Sbjct: 368 LAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFLALIYWFA 427

Query: 137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
             S  G+    P    +   AS+ IFL LL
Sbjct: 428 PCSKMGKIMRGPFMKFVAHAASFTIFLGLL 457

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Activated by diacylglycerol (DAG) in a membrane-delimited fashion, independently of protein kinase C. Seems not to be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|P48995|TRPC1_HUMAN Short transient receptor potential channel 1 OS=Homo sapiens GN=TRPC1 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 21  IEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGT------ALMKSRFKYPL 74
           +E  F + YEEL  + K F  DL+   R++ E+E++L             L++ R     
Sbjct: 250 VEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTSSDEPLDKRGLLEERMNLSR 309

Query: 75  LMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTL 134
           L +A+ Y QKEFV+  N QQ L+ +W G    + +     K + +L+     P +++  L
Sbjct: 310 LKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRRKPTCKKIMTVLTVGIFWPVLSLCYL 369

Query: 135 CLQKSSYGRFYSIPVNIMINAMASYCIF 162
              KS +GR    P    I   ASY  F
Sbjct: 370 IAPKSQFGRIIHTPFMKFIIHGASYFTF 397

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
307206341	779	Short transient receptor potential chann	0.871	0.209	0.421	4e-28
322791124	621	hypothetical protein SINV_02756 [Solenop	0.877	0.264	0.431	1e-26
332019843	757	Short transient receptor potential chann	0.850	0.210	0.393	5e-26
307175352	757	Short transient receptor potential chann	0.877	0.216	0.401	2e-25
242015890	1143	Short transient receptor potential chann	0.791	0.129	0.433	2e-24
270008187	789	hypothetical protein TcasGA2_TC013866 [T	0.796	0.188	0.4	4e-24
91082017	779	PREDICTED: similar to trp-like protein [	0.796	0.191	0.4	4e-24
340726510	752	PREDICTED: short transient receptor pote	0.796	0.198	0.44	9e-23
350405349	752	PREDICTED: short transient receptor pote	0.796	0.198	0.433	1e-22
193713585	747	PREDICTED: short transient receptor pote	0.828	0.207	0.416	1e-21

>gi|307206341|gb|EFN84398.1| Short transient receptor potential channel 5 [Harpegnathos saltator]

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 9   LSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKS 68
           LS  L R  T D E  F   Y+ L     QF  DLI C R   EVE +LKR  G     S
Sbjct: 232 LSAELSREATFDKE--FYPDYKALSKEVSQFATDLIGCARKVDEVECILKRNVGFG-RAS 288

Query: 69  RFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPW 128
            F YP L++A+DY QK FVAHPNVQQ+++  WIG W +W+  S   K L ++ ++ +LP+
Sbjct: 289 SFVYPRLLLALDYEQKTFVAHPNVQQLVESTWIGSWHEWKVRSMWLKCLSVIPQVGMLPF 348

Query: 129 ITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           I  V +    S   +F+ IPVN  ++++A+Y IFL  ++ QS+ DK
Sbjct: 349 IAFVMMVAPNSKRAKFFEIPVNKFLSSVANYLIFLTFVFLQSHSDK 394

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791124|gb|EFZ15686.1| hypothetical protein SINV_02756 [Solenopsis invicta]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 9   LSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKS 68
           LS  L +  + D E  F   Y+ L     QF  DLI C R A EVE VLK+  G     S
Sbjct: 158 LSAELRKEASFDKE--FYPDYKALSDEVTQFAADLIGCARTAEEVECVLKQTAGFG-RTS 214

Query: 69  RFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPW 128
            F YP L++A+DY QK FVAHPNVQQ+++  WIG W +W+  +   K L I+ +I LLP 
Sbjct: 215 SFVYPRLLLALDYEQKTFVAHPNVQQLVESQWIGTWHEWKVRNMWLKCLTIIPQIGLLPI 274

Query: 129 ITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKN 175
             +V L    S   +FY IPVN  ++++A+Y IFL  ++ QS  DK 
Sbjct: 275 KALVILFTPNSERVKFYEIPVNKFLSSVANYLIFLTFVFFQSRSDKT 321

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019843|gb|EGI60304.1| Short transient receptor potential channel 5 [Acromyrmex echinatior]

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 16  SHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLL 75
           S  +  +  F   Y+ L     QF  +LIDC R A EV  +L++  G     S F+YP L
Sbjct: 222 SKEASFDKEFYPDYKALSDEVSQFATELIDCARTAEEVRCILRQITGFG-RTSSFEYPRL 280

Query: 76  MVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLC 135
           ++A+DY QK FVAHPNVQQ+++  WI  W +W+  +   K L I+ RI +LP +  V L 
Sbjct: 281 LLALDYEQKTFVAHPNVQQLVESKWIDTWHEWKVRNTLLKCLTIIPRIVMLPIMAFVMLL 340

Query: 136 LQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKN 175
              S   +FY IP+N  ++++A+Y IFL  ++ QS  DK 
Sbjct: 341 APNSKQAKFYEIPINKCLSSVANYVIFLTFVFLQSRSDKT 380

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175352|gb|EFN65371.1| Short transient receptor potential channel 5 [Camponotus floridanus]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 9   LSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKS 68
           LS  L R  + D E  F   Y+ L      F  DLI   R A EVE VLK+  G     S
Sbjct: 217 LSAELSREASFDRE--FYPDYKALSSEVSHFATDLIGYARTAEEVECVLKQIAGFG-RSS 273

Query: 69  RFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPW 128
            F YP L++A+DY+QK F+AHPNVQQ+++  WIG W +W+  S   K L ++ ++ +LP 
Sbjct: 274 TFIYPRLLLALDYKQKSFIAHPNVQQIVESKWIGTWHEWKVRSTWLKCLSVIPQLIILPI 333

Query: 129 ITIVTLCLQKSSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDKN 175
           +  + L    S   +FY IPVN  ++++A+Y IFL  ++ QS+ DK 
Sbjct: 334 VAFIVLFAPNSKRAKFYEIPVNKFLSSVANYLIFLTFVFLQSSSDKT 380

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015890|ref|XP_002428580.1| Short transient receptor potential channel, putative [Pediculus humanus corporis] gi|212513214|gb|EEB15842.1| Short transient receptor potential channel, putative [Pediculus humanus corporis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 25  FGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQK 84
           F +S+EEL    + FTV+LI CCR+A EVEI+LK  K    +    K+P L  A+D +QK
Sbjct: 608 FKTSFEELWCSLRTFTVELIGCCRNAQEVEIILK--KSPKSVAEHVKFPRLQDAIDLKQK 665

Query: 85  EFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRF 144
           EFV+HP  Q +L   W G+  +W+  S   + L +  RI +LP++TI+ + L   S  R 
Sbjct: 666 EFVSHPYTQAVLSDAWTGELFEWKIRSPLMQSLAVFPRIPMLPFMTILCMFLPNHSLVRK 725

Query: 145 YSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           +  PVN MI+ +ASY IFL +L+ +SN DK
Sbjct: 726 WKTPVNKMISNVASYLIFLIILFLESNLDK 755

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008187|gb|EFA04635.1| hypothetical protein TcasGA2_TC013866 [Tribolium castaneum]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 25  FGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQK 84
           F +SY EL +    F V+LI  CR++ EVE +LK++ G     S F YP L++AMDY+QK
Sbjct: 280 FRNSYLELANEVSNFAVELIAGCRNSGEVETILKQKAGIQ-NASIFMYPRLVLAMDYKQK 338

Query: 85  EFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRF 144
            FVAH +VQ +++ +W G+W D+     P K +  + RI LLP I ++ + L K      
Sbjct: 339 FFVAHAHVQHIVESLWRGNWYDYNLKPIPAKIIYPIFRILLLPIIVVMCIFLPKHQMVAH 398

Query: 145 YSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           ++IP+N MIN +A++ +FL +++ +SN+ K
Sbjct: 399 WNIPLNRMINHVAAFLVFLVIIFLESNRSK 428

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082017|ref|XP_970049.1| PREDICTED: similar to trp-like protein [Tribolium castaneum]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 25  FGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQK 84
           F +SY EL +    F V+LI  CR++ EVE +LK++ G     S F YP L++AMDY+QK
Sbjct: 270 FRNSYLELANEVSNFAVELIAGCRNSGEVETILKQKAGIQ-NASIFMYPRLVLAMDYKQK 328

Query: 85  EFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRF 144
            FVAH +VQ +++ +W G+W D+     P K +  + RI LLP I ++ + L K      
Sbjct: 329 FFVAHAHVQHIVESLWRGNWYDYNLKPIPAKIIYPIFRILLLPIIVVMCIFLPKHQMVAH 388

Query: 145 YSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           ++IP+N MIN +A++ +FL +++ +SN+ K
Sbjct: 389 WNIPLNRMINHVAAFLVFLVIIFLESNRSK 418

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726510|ref|XP_003401600.1| PREDICTED: short transient receptor potential channel 5-like [Bombus terrestris]

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 25  FGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQK 84
           F   Y EL     QF  DLIDC R   EVE++LK+  G A    +F YP L+ A+   Q+
Sbjct: 226 FYHDYIELAENVMQFATDLIDCARSVDEVEVILKQSTGFA-HSYKFIYPRLLFALHNTQR 284

Query: 85  EFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRF 144
            FVAHPNVQQ++   WI  W +W+  +   K L IL RIF+LP I +V L    S   +F
Sbjct: 285 TFVAHPNVQQLITSKWIDGWYEWKIMNPWMKSLFILMRIFMLPVILVVVLVAPNSKRSKF 344

Query: 145 YSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           +  PVN  I++ ASY +FL +++ QSN DK
Sbjct: 345 WQSPVNKFISSTASYLVFLLIVFLQSNVDK 374

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405349|ref|XP_003487407.1| PREDICTED: short transient receptor potential channel 5-like [Bombus impatiens]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 25  FGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDYRQK 84
           F   Y EL     QF  DLIDC R   EVE++LK+  G A    +F YP L+ A+   Q+
Sbjct: 226 FYHEYIELSESVMQFATDLIDCARSVDEVEVILKQSTGFA-HSYKFIYPRLLFALHNTQR 284

Query: 85  EFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRF 144
            FVAHPNVQQ++   WI  W +W+  +   K L IL R+F+LP I +V L    S   +F
Sbjct: 285 TFVAHPNVQQLITSKWIDGWYEWKIMNPWMKSLFILMRVFMLPVILVVVLVAPNSKRSKF 344

Query: 145 YSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           +  PVN  I++ ASY +FL +++ QSN DK
Sbjct: 345 WQSPVNKFISSTASYLVFLLIVFLQSNADK 374

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713585|ref|XP_001942539.1| PREDICTED: short transient receptor potential channel 5-like [Acyrthosiphon pisum]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 19  SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVA 78
            ++  +F S YE L  +T+ F VDLI  CR + EV+++L R++G     S F Y  L++A
Sbjct: 235 GNVNRLFKSDYESLNLQTRIFAVDLIGLCRTSDEVKLILTRKEGCNFFGS-FPYHRLVMA 293

Query: 79  MDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQK 138
           MD +QKEFVAH +VQQ+L+  W G+W  W+          +L R+ LL WI ++ L    
Sbjct: 294 MDLKQKEFVAHGSVQQILEVAWAGNWYVWKDRWSNTSAWAVLFRVPLLLWILLLYLFAPY 353

Query: 139 SSYGRFYSIPVNIMINAMASYCIFLFLLWHQSNQDK 174
           S    +YS+PVN MIN +ASY +FL +L   +N DK
Sbjct: 354 SKNSEYYSLPVNRMINYLASYAVFLVVLTWANNLDK 389

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
UNIPROTKB|Q3MHB9	460	TRPC4 "TRPC4 protein" [Homo sa	0.791	0.321	0.38	2.9e-17
UNIPROTKB|E1C0Y0	890	TRPC4 "Uncharacterized protein	0.791	0.166	0.386	3.9e-17
UNIPROTKB|F1NP71	975	TRPC4 "Uncharacterized protein	0.791	0.151	0.386	4.5e-17
UNIPROTKB|E2QUL7	946	TRPC4 "Uncharacterized protein	0.791	0.156	0.38	8.9e-17
UNIPROTKB|F1Q223	977	TRPC4 "Uncharacterized protein	0.791	0.151	0.38	9.3e-17
UNIPROTKB|P79100	979	TRPC4 "Short transient recepto	0.791	0.151	0.38	9.4e-17
UNIPROTKB|Q91ZM0	893	Trpc4 "Short transient recepto	0.791	0.165	0.38	1e-16
MGI|MGI:109525	974	Trpc4 "transient receptor pote	0.791	0.151	0.38	1.2e-16
UNIPROTKB|Q9UBN4	977	TRPC4 "Short transient recepto	0.791	0.151	0.38	1.2e-16
UNIPROTKB|F1RS35	977	TRPC4 "Uncharacterized protein	0.791	0.151	0.38	1.2e-16

UNIPROTKB|Q3MHB9 TRPC4 "TRPC4 protein" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C0Y0 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 58/150 (38%), Positives = 77/150 (51%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K L  +    L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMLTCVVIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NP71 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 58/150 (38%), Positives = 77/150 (51%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   232 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 291

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K L  +    L P  ++  L  
Sbjct:   292 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMLTCVVIGLLFPVFSVCYLIA 351

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   352 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 381

GO:0005901 "caveola" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

UNIPROTKB|E2QUL7 TRPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 8.9e-17, P = 8.9e-17
 Identities = 57/150 (38%), Positives = 77/150 (51%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R  ++L++ +    L  L 
Sbjct:   200 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDSSLIEEQSGNDLARLK 259

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   260 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 319

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   320 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 349

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

UNIPROTKB|F1Q223 TRPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 57/150 (38%), Positives = 77/150 (51%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R  ++L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDSSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

UNIPROTKB|P79100 TRPC4 "Short transient receptor potential channel 4" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLLEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIVGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005901 "caveola" evidence=IEA

UNIPROTKB|Q91ZM0 Trpc4 "Short transient receptor potential channel 4" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:109525 Trpc4 "transient receptor potential cation channel, subfamily C, member 4" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0005901 "caveola" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IMP

GO:0015279 "store-operated calcium channel activity" evidence=ISO;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0034704 "calcium channel complex" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0045296 "cadherin binding" evidence=ISO

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

GO:0070509 "calcium ion import" evidence=ISO

GO:0070588 "calcium ion transmembrane transport" evidence=IMP

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IDA

UNIPROTKB|Q9UBN4 TRPC4 "Short transient receptor potential channel 4" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0005901 "caveola" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0034704 "calcium channel complex" evidence=IDA

GO:0006816 "calcium ion transport" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0045296 "cadherin binding" evidence=IPI

GO:0005911 "cell-cell junction" evidence=IDA

UNIPROTKB|F1RS35 TRPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 57/150 (38%), Positives = 76/150 (50%)

Query:    19 SDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPL--LM 76
             S +E  F S YEEL  + KQF  DL+D  R + E+EI+L  R   +L++ +    L  L 
Sbjct:   231 SKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLK 290

Query:    77 VAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136
             +A+ YRQKEFVA PN QQ+L   W  ++  W +     K +       L P  ++  L  
Sbjct:   291 LAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIA 350

Query:   137 QKSSYGRFYSIPVNIMINAMASYCIFLFLL 166
              KS  G F   P    I   ASY  FLFLL
Sbjct:   351 PKSPLGLFIRKPFIKFICHTASYLTFLFLL 380

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005901 "caveola" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-12

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 20/162 (12%)

Query: 17  HTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTAL----MKSRFKY 72
           H   +E  F + YEEL  +   F + L+D  RD+ E+E++L  +  T L     + R   
Sbjct: 213 HLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVL 272

Query: 73  PLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLP----- 127
             L +A+ Y+QK+FVA PN QQ+L   W+ +   W +     + +++       P     
Sbjct: 273 FRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDM 332

Query: 128 -WITIVTLCLQ--KSSYGRFYSIPVNIMINAMASYCIFLFLL 166
             I  ++   Q     + +F            ASY  FL+L+
Sbjct: 333 YLIAPLSRLGQFKWKPFIKFIFH--------SASYLYFLYLI 366

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG3609|consensus	822		100.0
KOG3614|consensus	1381		99.97
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
PF08344	63	TRP_2: Transient receptor ion channel II; InterPro	96.76

>KOG3609|consensus

Probab=100.00  E-value=2.9e-49  Score=364.12  Aligned_cols=169  Identities=31%  Similarity=0.451  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHcCCCCccccccCCCchhHHHHhhc
Q psy4453           2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDY   81 (187)
Q Consensus         2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~lL~~~~~~~~~~~~~~~~~L~lAi~~   81 (187)
                      .|.|||+||++|++||.+|.  ||+++|++|+.||++||+|||||||+++|++.+||+++.+....++.+++||++||+|
T Consensus       204 PiltAf~LS~eL~~La~~E~--Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~iLn~~~~~~~~~~~~sl~RLklAIky  281 (822)
T KOG3609|consen  204 PILTAFALSWDLQQLASDEL--EFKEDYRDLSMQCQRFAVDLLDQARTSDELEMILNNRNNCPERMTRISLPRLKLAIKY  281 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCCCCcccccccccHHHHHHHHH
Confidence            58999999999999999999  9999999999999999999999999999999999998764221235688999999999


Q ss_pred             cccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcccchhhhhcchhHHHhhHHHHHHH
Q psy4453          82 RQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCI  161 (187)
Q Consensus        82 ~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~s~~~~f~~~P~~kF~~~~~Sy~~  161 (187)
                      +||+|||||||||+|+++||+   +||+++...|++.+...++++|+++++|+++|+|+.|+++++||+||++|++||++
T Consensus       282 eqK~FVahpNcQq~L~siWy~---g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~  358 (822)
T KOG3609|consen  282 EQKEFVAHPNCQQLLKSVWYS---GWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLV  358 (822)
T ss_pred             hhhheecCccHHHHHHHHHhh---hhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHH
Confidence            999999999999999999999   78889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q psy4453         162 FLFLLWHQSNQDKN  175 (187)
Q Consensus       162 FL~Ll~~~s~~~~~  175 (187)
                      ||+||+++|..+..
T Consensus       359 FL~LL~l~s~~~~~  372 (822)
T KOG3609|consen  359 FLILLILASLIGFY  372 (822)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999975443

>KOG3614|consensus

Probab=99.97  E-value=5e-30  Score=244.96  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH--HHcCCCCccccccCCCchhHHHHh
Q psy4453           3 IVMLNMLSLILLRSHTSDIE-WIFGSSYEELLHRTKQFTVDLIDCCRDASEVEI--VLKRRKGTALMKSRFKYPLLMVAM   79 (187)
Q Consensus         3 i~~A~~ls~~L~~la~~e~~-~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~--lL~~~~~~~~~~~~~~~~~L~lAi   79 (187)
                      ++.|+.+|+.+|.||.+++| .|..++.+++|++|++.|++|||+|++++|..+  ||.+.... | ++.   +||++|+
T Consensus       590 ~AkALvA~rLykslA~ea~d~~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~LLt~el~~-W-~~~---tCL~LAv  664 (1381)
T KOG3614|consen  590 VAKALVASRLYKSLAHEAHDWHEAAKELKTLSDEFEGLAVELFDECYSSDEARALQLLTYELEN-W-GNS---TCLQLAV  664 (1381)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHhh-c-ccc---cHHHHHH
Confidence            68899999999999999988 899999999999999999999999999999876  67776654 7 322   9999999


Q ss_pred             hccccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcc---------------------
Q psy4453          80 DYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQK---------------------  138 (187)
Q Consensus        80 ~~~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~---------------------  138 (187)
                      +++.|+|+||||||.+|+++|||++..  ++++.+|++    .++++|+++++..+.++                     
T Consensus       665 ~a~~r~FiAH~c~Q~lLt~~W~G~L~~--r~~~~~kvi----la~icpP~Il~l~~kfk~~~e~~~~t~~~~~~~~~~~~  738 (1381)
T KOG3614|consen  665 EANAREFIAHPCCQMLLTDKWYGNLQA--RNNPIWKVI----LALICPPLILTLLVKFKMSEETPSQTVAELDVDKDPQK  738 (1381)
T ss_pred             hcCCCceeccHhHHHHHHHHHhccccc--cCCCcHHHH----HHHHhhHHHHHhhcchhhhhccCcccchhhhccccccc
Confidence            999999999999999999999999965  377788876    44666776666554321                     


Q ss_pred             -------------------------------------------cchhhhhcchhHHHhhHHHHHHHHHHHHHHHh
Q psy4453         139 -------------------------------------------SSYGRFYSIPVNIMINAMASYCIFLFLLWHQS  170 (187)
Q Consensus       139 -------------------------------------------s~~~~f~~~P~~kF~~~~~Sy~~FL~Ll~~~s  170 (187)
                                                                 .|+..||++|++|||.|++||++||+|+.-.-
T Consensus       739 ~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvl  813 (1381)
T KOG3614|consen  739 QRASSSYSSISSREEDLEAGPLSTRSKGDQSMVFPRPRPLGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVL  813 (1381)
T ss_pred             cccccccCcccchhcccccccccccccCChhcccCCCCchhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence                                                       14568999999999999999999999987544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=2.2e-21  Score=182.82  Aligned_cols=167  Identities=29%  Similarity=0.438  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHcCCCCccc----cccCCCchhHHHH
Q psy4453           3 IVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTAL----MKSRFKYPLLMVA   78 (187)
Q Consensus         3 i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~lL~~~~~~~~----~~~~~~~~~L~lA   78 (187)
                      +.++...++....+|..+.  |++.+|.+++.+|.+++++++++|++++|++.++++......    ..+...+.++.++
T Consensus       201 in~~d~~g~T~Lh~A~~~~--~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMEN--EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            4567778888899999999  999999999999999999999999999999999987533211    1344456789999


Q ss_pred             hhccccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcccchhhhhcchhHHHhhHHHH
Q psy4453          79 MDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMAS  158 (187)
Q Consensus        79 i~~~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~s~~~~f~~~P~~kF~~~~~S  158 (187)
                      ++++||+|++||+||+.++..|+++.++|++++..++++......+.+|.+..+|.++|.++++++...|++||++|+.|
T Consensus       279 ~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~P~~~l~~~kw~pf~kf~~~~~~  358 (743)
T TIGR00870       279 IKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFHSAS  358 (743)
T ss_pred             HHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888999888877788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy4453         159 YCIFLFLLWHQSN  171 (187)
Q Consensus       159 y~~FL~Ll~~~s~  171 (187)
                      |+.||+++++.+.
T Consensus       359 ~~~fl~l~~~~~~  371 (743)
T TIGR00870       359 YLYFLYLIIFTSV  371 (743)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability

Probab=96.76  E-value=0.00082  Score=44.74  Aligned_cols=23  Identities=22%  Similarity=0.017  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHH
Q psy4453           2 VIVMLNMLSLILLRSHTSDIEWIFG   26 (187)
Q Consensus         2 ~i~~A~~ls~~L~~la~~e~~~E~~   26 (187)
                      .|.+||+||++|+++|..|+  |||
T Consensus        41 Pi~~AF~Ls~eL~~la~~E~--Efk   63 (63)
T PF08344_consen   41 PILTAFELSWELRELARIEK--EFK   63 (63)
T ss_pred             HHHHHHHHHHHHHHHHHccc--ccC
Confidence            48899999999999999999  885

The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00