Psyllid ID: psy4475

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------85
MLASGQQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSSQGVVPADLVQE
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcc
MLASGQQSQAATQAKQILDQFDTLLGKVKSLLadredqykDHRVYKEACDELLTWLTRARdkipsmkqkslsdKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVlastspdgqTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAatacisrpssplesahppvpdrEIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLitdwekkpckiKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINqaigkkdsQQKVIESYKADVNDLDKQLDAISKKLDsvehgqgvlcpvkantLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINlwknsqsdedLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETtarvgevdgnsatvQEKIDKYDKENQSEIDMLNDVWKEikpkadqeSDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLgtvesekpkvsqistLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAkiqdrtlppQTLIQFIQQLEGELIDMKDKLAQMTRTgneisqhtesneeRALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKrtflsepydsnnlsdLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSsqgvvpadlvqe
MLASGQQSQAATQAKQILDQFDTLLGKVKSLladredqykdhrvykEACDELLTWLTRardkipsmkqkslsdkLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVlastspdgqTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISrpssplesahppvPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKslitdwekkpcKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQaigkkdsqQKVIESYKADVNELDKQLDAISLIEGTInqaigkkdsqQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITettarvgevdgnsatvqekidkydkenqseIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGtvesekpkvsqistlaapIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNeisqhtesneeRALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLsepydsnnlsdLRVKLNSYTELTsfvnkhtrkvkdlSKNTQeayvssqgvvpadlvqe
MLasgqqsqaatqakqILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGaaiqageaataCISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNeaeaglegeeklkaeVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITAlellseelnskleekGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSSQGVVPADLVQE
****************ILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARD************KLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVL***************KALNMKMHWIDLLNKLEHEKNRLGAAIQAG**********************************************************LKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKK***QKVIESYKADVNELDKQLDAISLIEGTINQAIG***********Y*************I***LDSVEHGQGVLCPVKANTLKDI********************QVKALLSNLDAQFVDEQKLLDEINLWKN******LAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVD*************************DVW*****************QIERINDQWNTLVGDLDTR*******************************VEQCDGVVHSLAVLTQ*********************ISTLAAPIVKFLKKDGLDLQKRITALELL********************MRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDM*****************************TILSFT**************KEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNK******************************
********************************************YKEACDELLTWLTR************************************************************************************************************************************************************************************************QDL*********************************************************************************************************************************************************************************************************************************************************************************************************************KLMSSSERTL************************************************************************SEE**********************LTDVEKIGT******************************************************************FTEQMQQ****************DAWKHFLSLHAEVMKWV*****************************************************************
*************AKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATA**************PVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLE**********AMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSSQGVVPADLVQE
*****QQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSS***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLASGQQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLxxxxxxxxxxxxxxxxxxxxxTACISRPSSPLESAHPPVPDREIAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKxxxxxxxxxxxxxxxxxxxxxLDAISLIEGTINQAIGKxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPxxxxxxxxxxxxxxxxxxxxxFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKxxxxxxxxxxxxxxxxxxxxxLKGVETSVEQCDGVVHSxxxxxxxxxxxxxxxxxxxxxKPKVSQISTLAAPIVKFLKKDGLDLQKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFxxxxxxxxxxxxxxxxxxxxxGNEISQHTESNEERALIQSTxxxxxxxxxxxxxxxxxxxxxVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSSQGVVPADLVQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query849 2.2.26 [Sep-21-2011]
P11533 3660 Dystrophin OS=Gallus gall yes N/A 0.359 0.083 0.222 5e-09
O97592 3680 Dystrophin OS=Canis famil yes N/A 0.306 0.070 0.216 0.0002
P11531 3678 Dystrophin OS=Mus musculu yes N/A 0.306 0.070 0.202 0.0008
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1 Back     alignment and function desciption
 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 152/323 (47%), Gaps = 18/323 (5%)

Query: 479  VGEVDG-NSATVQEKIDKYDKE-NQSEIDMLNDVWKEIKPK-ADQESDQLIEDQIERIND 535
            VG++D  N   +++K +  D E  + ++D L    + +K K ++QE+  +I D+IE+I  
Sbjct: 2497 VGDLDDINDMIIKQKANMQDLEQRRPQLDELITAAQNLKNKTSNQEARTIITDRIEKIQS 2556

Query: 536  QWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQN 595
            QW+ + G L  RR++L E+ +   Q  +    +E+ L+  +  +E    + +++  L + 
Sbjct: 2557 QWDDVHGYLQNRRQQLHEMQKDSTQWLEAKQEAEQVLEQAKAKLESWKEISYTVEALKKQ 2616

Query: 596  KSELESLLGTVESEKPKVSQISTLA-APIVKFLKKDGLDLQKRITALELLSEELNSKLEE 654
             SEL+     +   +  +  ++ +A  P+  +   D   ++     +      +N ++ E
Sbjct: 2617 NSELKQFSKEIRQWQMNIEGVNDVALKPVRDYSADDTRKVELMTDNINATWATINKRVSE 2676

Query: 655  KGKEVQKAKAMRAAYLTDVEKIGTWLQDAE--------AKIQDRTLP-PQTLIQFIQQ-- 703
            +   ++ A  M   +  D+EK   WL +AE        A  +++TL  PQ + + ++Q  
Sbjct: 2677 REAALESALLMLQEFYLDLEKFLAWLTEAETTANVLQDATHKEKTLEDPQMVRELMKQWQ 2736

Query: 704  -LEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKE 762
             L+ E+    D    +   G +I +  E +E+  L+Q  + +   +  ++  K    +  
Sbjct: 2737 DLQAEIDAHTDIFHNLDENGQKILRSLEGSEDAVLLQRRLDNMNFRWSELRKKSLNIRSH 2796

Query: 763  VTGCDDAWKHF-LSLHAEVMKWV 784
            +    D WK   LSL  E++ W+
Sbjct: 2797 LEASTDQWKRLHLSLQ-ELLAWL 2818
May play a role in anchoring the cytoskeleton to the plasma membrane.
Gallus gallus (taxid: 9031)
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1 Back     alignment and function description
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query849
307206051 7966 Nesprin-1 [Harpegnathos saltator] 0.175 0.018 0.635 3e-47
322802858 2112 hypothetical protein SINV_80335 [Solenop 0.175 0.070 0.629 1e-46
340709092 16892 PREDICTED: hypothetical protein LOC10064 0.170 0.008 0.639 2e-46
383859152 12235 PREDICTED: nesprin-1-like [Megachile rot 0.170 0.011 0.639 3e-46
307175148 7969 Nesprin-1 [Camponotus floridanus] 0.175 0.018 0.629 4e-46
350413217 7873 PREDICTED: nesprin-1-like [Bombus impati 0.170 0.018 0.639 5e-46
332027402 11559 Nesprin-1 [Acromyrmex echinatior] 0.175 0.012 0.629 7e-46
345495296 7973 PREDICTED: nesprin-1-like [Nasonia vitri 0.083 0.008 0.692 1e-44
242014262 7677 Nesprin-1, putative [Pediculus humanus c 0.257 0.028 0.464 6e-43
157117211 11328 calmin [Aedes aegypti] gi|108876133|gb|E 0.254 0.019 0.420 4e-39
>gi|307206051|gb|EFN84144.1| Nesprin-1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 123/151 (81%), Gaps = 2/151 (1%)

Query: 1    MLASGQQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRAR 60
            M+ASGQQ  AA+QA+ IL++FD L  K+KSLLA+RE+QYKDHR+YKEA D+L+ WL+RAR
Sbjct: 4745 MIASGQQGLAASQAQDILNRFDELFEKIKSLLAEREEQYKDHRLYKEAHDDLIGWLSRAR 4804

Query: 61   DKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAV 120
            +KIPSMKQ+SLSDKLAIEN V PLESLLNKKAQGELLVEH+Q TG+VV ASTSP GQ  +
Sbjct: 4805 EKIPSMKQRSLSDKLAIENAVVPLESLLNKKAQGELLVEHLQHTGKVVCASTSPAGQEVI 4864

Query: 121  KNEMKALNMKMHWIDLLNKLEHEKNRLGAAI 151
            +NE++AL        L  +++ +K++L A +
Sbjct: 4865 RNEIRALTESFE--GLFKEIQQQKSQLEATV 4893

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322802858|gb|EFZ23050.1| hypothetical protein SINV_80335 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340709092|ref|XP_003393148.1| PREDICTED: hypothetical protein LOC100648310 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383859152|ref|XP_003705060.1| PREDICTED: nesprin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307175148|gb|EFN65250.1| Nesprin-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350413217|ref|XP_003489920.1| PREDICTED: nesprin-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332027402|gb|EGI67485.1| Nesprin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345495296|ref|XP_001606812.2| PREDICTED: nesprin-1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242014262|ref|XP_002427810.1| Nesprin-1, putative [Pediculus humanus corporis] gi|212512279|gb|EEB15072.1| Nesprin-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157117211|ref|XP_001652989.1| calmin [Aedes aegypti] gi|108876133|gb|EAT40358.1| AAEL007898-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query849
FB|FBgn026183613 Msp-300 "Muscle-specific prote 0.226 14.76 0.278 1e-17
ZFIN|ZDB-GENE-071218-4 8759 syne1b "spectrin repeat contai 0.362 0.035 0.184 2.4e-15
UNIPROTKB|P11533 3660 DMD "Dystrophin" [Gallus gallu 0.404 0.093 0.221 2.5e-15
UNIPROTKB|F1NS97 3660 DMD "Dystrophin" [Gallus gallu 0.404 0.093 0.219 5.3e-15
DICTYBASE|DDB_G02869851024 zipA "zipper-like domain-conta 0.654 0.542 0.202 1.1e-14
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.681 0.388 0.200 3.9e-14
UNIPROTKB|F1NG02 8787 SYNE1 "Uncharacterized protein 0.607 0.058 0.209 8.8e-14
SGD|S0000022161790 USO1 "Protein involved in the 0.908 0.430 0.199 5.8e-13
UNIPROTKB|E7ENN3 8409 SYNE1 "Nesprin-1" [Homo sapien 0.383 0.038 0.195 8.6e-13
UNIPROTKB|E9PEL9 8749 SYNE1 "Nesprin-1" [Homo sapien 0.383 0.037 0.195 9.6e-13
FB|FBgn0261836 Msp-300 "Muscle-specific protein 300" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 265 (98.3 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 54/194 (27%), Positives = 105/194 (54%)

Query:   657 KEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLA 716
             K+ ++AK +R  Y+  V+++  WL  AE ++Q+R+L P  + + +Q++  E+  + ++  
Sbjct:     6 KDFKRAKTVRTEYVDGVDEVQRWLLQAEVQVQERSLTPTQMKELLQRINHEITAIYERFT 65

Query:   717 QMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSL 776
              +   G  I ++  ++EE+ L+Q+TI      + Q+   L+E+K+ V    DAW  F++L
Sbjct:    66 LVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQVRGWLDEKKQAVGDSLDAWTRFMNL 125

Query:   777 HAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE-AY 835
             +  VM W SEKR F+ +  +   L + R KLN Y      +    + + ++ K  +    
Sbjct:   126 YQIVMSWASEKRNFIDQTIELRTLPEARNKLNDYVTSVKSIKPIVKHLSEMDKELEHIGQ 185

Query:   836 VSSQGVVPADLVQE 849
             V++ G +  D +QE
Sbjct:   186 VTTVGDLK-DKLQE 198
GO:0003779 "actin binding" evidence=ISS;NAS;IDA
GO:0015629 "actin cytoskeleton" evidence=IDA
GO:0008305 "integrin complex" evidence=IDA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0007498 "mesoderm development" evidence=NAS
GO:0003725 "double-stranded RNA binding" evidence=NAS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0007010 "cytoskeleton organization" evidence=ISS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0008335 "female germline ring canal stabilization" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP
GO:0007015 "actin filament organization" evidence=IMP
GO:0040023 "establishment of nucleus localization" evidence=IMP
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0030018 "Z disc" evidence=IDA
GO:0016477 "cell migration" evidence=IMP
GO:0007519 "skeletal muscle tissue development" evidence=IMP
GO:0007523 "larval visceral muscle development" evidence=IMP
GO:0060361 "flight" evidence=IMP
GO:0031965 "nuclear membrane" evidence=IDA
GO:0051640 "organelle localization" evidence=IMP
GO:0040011 "locomotion" evidence=IMP
ZFIN|ZDB-GENE-071218-4 syne1b "spectrin repeat containing, nuclear envelope 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P11533 DMD "Dystrophin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NS97 DMD "Dystrophin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG02 SYNE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENN3 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PEL9 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query849
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-07
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
pfam13166 713 pfam13166, AAA_13, AAA domain 3e-04
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 6e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
pfam13166713 pfam13166, AAA_13, AAA domain 0.001
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information 
 Score = 52.8 bits (127), Expect = 8e-07
 Identities = 53/266 (19%), Positives = 114/266 (42%), Gaps = 17/266 (6%)

Query: 135 DLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVE 194
            L ++L   +NRL    Q    A+  I      +E       ++E     +L++++E++E
Sbjct: 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL-----EQEEE---KLKERLEELE 743

Query: 195 SKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLK 254
             LS L +    +E  +    E+ A I++ +  +   E+    ++A  + + I ++Q   
Sbjct: 744 EDLSSLEQE---IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800

Query: 255 GVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGT 314
             +  ++    +E +L E+   +N+   +K+  +K I+  +    +L +Q   I  IE  
Sbjct: 801 SKL--EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ---IKSIEKE 855

Query: 315 INQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNT 374
           I    GKK+  ++ +E  +A + DL+ +L  + K+ D +E     L   K   L+     
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL-ERKIEELEAQIEK 914

Query: 375 LENSLQTPLEQLQDKAGQVKALLSNL 400
               L     +L+    ++  +    
Sbjct: 915 KRKRLSELKAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 849
KOG0517|consensus 2473 100.0
KOG0517|consensus 2473 100.0
KOG0040|consensus 2399 100.0
KOG0040|consensus 2399 100.0
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.51
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.4
KOG4286|consensus 966 99.37
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 98.83
smart00150101 SPEC Spectrin repeats. 98.72
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 98.53
KOG4286|consensus 966 98.44
smart00150101 SPEC Spectrin repeats. 98.34
KOG0994|consensus1758 97.82
KOG0994|consensus1758 97.36
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 93.13
PRK04778569 septation ring formation regulator EzrA; Provision 88.11
KOG0161|consensus 1930 86.18
COG4477 570 EzrA Negative regulator of septation ring formatio 80.49
>KOG0517|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.8e-52  Score=480.01  Aligned_cols=774  Identities=16%  Similarity=0.203  Sum_probs=625.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhh
Q psy4475           8 SQAATQAKQILDQFDTLLGKVKSLLADREDQYK---DHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPL   84 (849)
Q Consensus         8 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~lq---~~q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~   84 (849)
                      ..++..|..-...++.+|+.|+.++++|..++.   ..|.|..++++|..||+.++..+++-.  .|.+-+..+.-|.+.
T Consensus      1022 Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see--~p~~l~eAe~LL~qH 1099 (2473)
T KOG0517|consen 1022 PAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEE--GPVDLAEAEQLLKQH 1099 (2473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCcHHHHHHHHHHH
Confidence            367888899999999999999999999999995   449999999999999999999999975  366666667778899


Q ss_pred             HHHHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHH----------------HHHHHHhHHH
Q psy4475          85 ESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLN----------------KLEHEKNRLG  148 (849)
Q Consensus        85 q~l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~----------------~l~~~~~~le  148 (849)
                      .+|..++..++.-|..+.+.|+.+..+...+.--+|++.|+.|  .+.|.+|+.                .|.+...+.+
T Consensus      1100 ~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L--~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~e 1177 (2473)
T KOG0517|consen 1100 AALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQAL--GTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAE 1177 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875555556899999999  999999988                4677777999


Q ss_pred             HHHHHhhhhhhhccCCCCccc-------------------------------------cCCCCCCchHHHHHHHHhHHHH
Q psy4475         149 AAIQAGEAATACISRPSSPLE-------------------------------------SAHPPVPDREIAIRLRLEDQIE  191 (849)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~  191 (849)
                      .++.+.+++++..+-|.+.-.                                     ..+..+.++-..|..+...+.+
T Consensus      1178 a~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~ 1257 (2473)
T KOG0517|consen 1178 ATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRE 1257 (2473)
T ss_pred             HHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877666441                                     1345555566667777777888


Q ss_pred             HHHHHHHhHhhhhhCchHHHHHHHHHHHHHHhhhHHhhhhhcccc-----c-cCchhHHHHHHHHHhhHHHHHHhhhhhh
Q psy4475         192 QVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC-----K-IKAESAQAEIAKMQDLKGVVLQKQTEGL  265 (849)
Q Consensus       192 ~~q~~~~~l~~~~~~le~~~~~~~el~~w~~e~~~~~~d~~~~~~-----~-~~~~~~~~el~~~~~~~~~l~~~~~~~~  265 (849)
                      ..+.+...|.+++ ++..|+++|+||..||++++.++.|.+++.+     + ++|++|+++|.+++.++.+|++.|..++
T Consensus      1258 rA~q~~~~L~~sl-elQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~ 1336 (2473)
T KOG0517|consen 1258 RAQQRLRKLKDSL-ELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELV 1336 (2473)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999 8999999999999999999999998877765     2 6789999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHhhccchhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHH
Q psy4475         266 LEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ---QKVIESYKADVNDLDKQ  342 (849)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~L~~~~~~k~~~---~~~~~~~~~~~~~~~~~  342 (849)
                      .+.|.                       +.|.   |..+|.+|++.|++|.+.+..|+..   ...-+.|.+.+.|+.+|
T Consensus      1337 ~ekpe-----------------------~~~~---V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~ 1390 (2473)
T KOG0517|consen 1337 SEKPE-----------------------LKAL---VEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKK 1390 (2473)
T ss_pred             hcCCc-----------------------cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88653                       4444   8999999999999999988777753   22447889999999999


Q ss_pred             HHHHHHhhhhccccCCCchHH-HHHHHHHHHHHHHhcCCchhHHhhHhHHHHHHHhchhhHHHhHHHHHHHHHHhhhccc
Q psy4475         343 LDAISKKLDSVEHGQGVLCPV-KANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQ  421 (849)
Q Consensus       343 l~~~~~~l~~~~~~~~~~~~~-~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~~~~~~~d~~~~~~q~llee~~~~~~~~  421 (849)
                      ++.++..|.+.+.|.++.+.+ .++|+.-+..+|.. ....+.++...|+.+...++  +++.|.+..            
T Consensus      1391 l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~-~~~kv~el~s~~~~ma~~~~--~a~~I~~~~------------ 1455 (2473)
T KOG0517|consen 1391 LDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEV-RAQKVAELQSQAKAMAEEGH--SAENIEETT------------ 1455 (2473)
T ss_pred             HHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhhhccCc--chhhHHHHH------------
Confidence            999999999999999987775 78999999999998 88899999999999987766  344443221            


Q ss_pred             chHHHHHhHhhhccHHHHHHHHhhchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhc--cccCCcccHHHHHHHHH
Q psy4475         422 SDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL--LLREQFTTLIMQIVGFITETTARVG--EVDGNSATVQEKIDKYD  497 (849)
Q Consensus       422 ~~~~~~~l~~~l~~~~~i~e~~~~~~~~~l~~~l--~~~~qf~~~~~el~~wl~e~~~~~~--~~~~~~~~ve~~~~k~~  497 (849)
                       .....+|.+...|+.+           +.+.+.  ....||..++++-..||.+..++..  +.+.+.++++..+||++
T Consensus      1456 -~~v~~Rf~~L~~Pl~~-----------R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q 1523 (2473)
T KOG0517|consen 1456 -LAVLERFEDLLGPLQE-----------RRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQ 1523 (2473)
T ss_pred             -HHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhH
Confidence             1233455555555443           111222  1346999999999999999999985  44566778888888887


Q ss_pred             HH------hHHHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475         498 KE------NQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERT  571 (849)
Q Consensus       498 ~~------~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~W  571 (849)
                      ..      .+..|+.|...|+.|+..+ +++++.|..++++|...|..|...+..|.+.|+.++...++|. ++.++++|
T Consensus      1524 ~Lq~EI~~H~prI~~vl~~gq~Li~~~-h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~f-DaaE~EaW 1601 (2473)
T KOG0517|consen 1524 TLQAEIKGHQPRINDVLERGQSLIDSG-HPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYF-DAAEAEAW 1601 (2473)
T ss_pred             HHHHHHHhcchHHHHHHHHhHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence            54      3446999999999999875 4899999999999999999999999999999999997655555 56999999


Q ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHH-------HHHHhhHHhhh-----------hhHHHHHhhhhHHHHHHhhc---
Q psy4475         572 LKGVETSVEQCDGVVHSLAVLTQNKSEL-------ESLLGTVESEK-----------PKVSQISTLAAPIVKFLKKD---  630 (849)
Q Consensus       572 L~~~e~~l~~~~~v~~~~~ql~~~~~~l-------~~~~~~v~~l~-----------~~~~~i~~~~~~l~~~~~~~---  630 (849)
                      |++.+..+++.++ |+|...-..+.+++       ..+...|..|.           +..+.|....+.+.+.|...   
T Consensus      1602 m~Eqel~m~see~-gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~qldkly~~Lk~L 1680 (2473)
T KOG0517|consen 1602 MGEQELYMMSEEY-GKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQLDKLYAGLKDL 1680 (2473)
T ss_pred             HhhhHHHHhhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888 65543333333333       33333333331           22333333333333444331   


Q ss_pred             --------------------------------------------------------------------------------
Q psy4475         631 --------------------------------------------------------------------------------  630 (849)
Q Consensus       631 --------------------------------------------------------------------------------  630 (849)
                                                                                                      
T Consensus      1681 A~eRr~~Lee~l~L~el~RE~dDLeqWIae~e~vAgS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI 1760 (2473)
T KOG0517|consen 1681 AEERRRRLEETLRLYELSREVDDLEQWIAEKEVVAGSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELI 1760 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---chHHHHH
Q psy4475         631 ---GLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQD-RTLP---PQTLIQF  700 (849)
Q Consensus       631 ---~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~-~~~~---~~~l~~~  700 (849)
                         |++...+.+.-++|+..|   +..+..|.+.|..+..++ .||.|+.++..||.++...+.+ .+.+   ...+.++
T Consensus      1761 ~~ghs~a~tvaewkd~LneaW~~LlELi~tR~q~Laas~elh-rf~~D~~E~l~riqeK~~~lp~~lgRD~~s~~al~R~ 1839 (2473)
T KOG0517|consen 1761 ERGHSAAATVAEWKDGLNEAWADLLELIDTRGQKLAASRELH-RFHRDAREVLGRIQEKQAALPDDLGRDLNSAEALQRK 1839 (2473)
T ss_pred             hcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhhCchhhCCCcchHHHHHHH
Confidence               567777777789999999   889999999999999886 8999999999999999988853 2222   1235578


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475         701 IQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEV  780 (849)
Q Consensus       701 lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el  780 (849)
                      |+.|..||.+..+.+..|.+.+.+|...|+ .+-+..|+.+.+.+.+.|..|...|..|+..|..+.+ ..+|+..+.++
T Consensus      1840 H~~fe~dl~~l~~Qvqql~e~a~rLq~~Ya-G~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~D-l~rF~~~VRDl 1917 (2473)
T KOG0517|consen 1840 HEAFEHDLVALEPQVQQLQEDAARLQKAYA-GDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSD-LFRFFSMVRDL 1917 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            899999999999999999999999999994 4568899999999999999999999999999999998 66999999999


Q ss_pred             HHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh-hcccCCCCCchhh
Q psy4475         781 MKWVSEKRTFL---SEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE-AYVSSQGVVPADL  846 (849)
Q Consensus       781 ~~Wl~~~e~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~~~~~~~~~~  846 (849)
                      ..|+.....-+   ..|-.+++.+-+...|+-+...+++..+...+..++|+.|.. +|+.+ .+|.+||
T Consensus      1918 lsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~~hyas-~EI~ekl 1986 (2473)
T KOG0517|consen 1918 LSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSACIELGKSLLLRKHYAS-EEIKEKL 1986 (2473)
T ss_pred             HHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHhcccch-HHHHHHH
Confidence            99999998544   345566666777889999999999999999999999999999 55443 4444444

>KOG0517|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query849
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 1e-10
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 2e-05
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 2e-10
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 2e-09
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 1e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-06
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-07
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-06
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 1e-05
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-05
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-05
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 8e-05
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 4e-04
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 2e-04
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 4e-04
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 99.2 bits (246), Expect = 2e-21
 Identities = 95/651 (14%), Positives = 212/651 (32%), Gaps = 129/651 (19%)

Query: 60  RDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPD-GQT 118
           +D +   +   + +    +++    +S+L+K+    +++     +G + L  T     + 
Sbjct: 19  KDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 119 AVKNEMK-ALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPD 177
            V+  ++  L +   +  L++ ++ E+             T         L + +     
Sbjct: 78  MVQKFVEEVLRINYKF--LMSPIKTEQR-------QPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 178 REIAIRLRLEDQIEQVESKLSQLNEAEA----GLEGEEK--LKAEVLAWIDDQKSLITDW 231
             ++   RL+    ++   L +L  A+     G+ G  K  +  +V       K      
Sbjct: 129 YNVS---RLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL---SYKVQ---- 177

Query: 232 EKKPCKI------KAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKD 285
            K   KI         S +  +  +Q L   +    T     D  + +   I+    +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELR 235

Query: 286 SQQKVIESYK------ADVNELDKQ-LDAISLIEGTINQAIGKKDSQQKV-IESYKADVN 337
              K  + Y+       +V   + +  +A               +   K+ + +    V 
Sbjct: 236 RLLK-SKPYENCLLVLLNVQ--NAKAWNAF--------------NLSCKILLTTRFKQVT 278

Query: 338 DLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALL 397
           D    L A +    S++H    L P +  +L      L   L    + L  +        
Sbjct: 279 D---FLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRR 329

Query: 398 SNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLL 457
            ++ A+ + +   L   + WK+   D+    +  S+  L+    R           L + 
Sbjct: 330 LSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSVF 381

Query: 458 RE--QFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIK 515
                  T+++ +     +       V  N       ++K  KE+   I     ++ E+K
Sbjct: 382 PPSAHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELK 436

Query: 516 PKADQESD---QLIE-DQIERINDQWNTLVGDLDT-------RREKLTELAEQWEQLEKL 564
            K + E      +++   I +  D  + +   LD           K  E  E+      +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 565 ---MSSSERTLKGVETSVEQCDGVVHSLAVL-------TQNKSELESLLGTVESEKPKVS 614
                  E+ ++   T+      ++++L  L         N  + E L+           
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--------- 547

Query: 615 QISTLAAPIVKFLKKDGLDL----QKRITALELLSEELNSKLEEKGKEVQK 661
                   I+ FL K   +L       +  + L++E+  +  EE  K+VQ+
Sbjct: 548 --------ILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query849
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.94
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.94
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.94
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.92
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.91
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.9
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.89
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.86
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.86
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.79
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 99.79
3r6n_A450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.78
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.76
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.74
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.73
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.71
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.68
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.66
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.66
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.66
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.66
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.64
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.61
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.6
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.55
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.54
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.54
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.46
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.4
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.38
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.34
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.32
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.29
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.28
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.28
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.25
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.12
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 98.99
3uun_A119 Dystrophin; triple helical, cell structure and sta 98.94
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 98.91
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 98.67
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 98.56
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 98.44
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 98.43
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 98.35
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 98.07
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 97.75
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 97.58
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 96.15
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 94.63
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 88.91
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 84.19
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=5.9e-24  Score=231.31  Aligned_cols=297  Identities=13%  Similarity=0.179  Sum_probs=253.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccc--CCcccHHHHHHHHHHH-------hHHHHHHHHHHHHHhcccCCccChHHHHH
Q psy4475         458 REQFTTLIMQIVGFITETTARVGEVD--GNSATVQEKIDKYDKE-------NQSEIDMLNDVWKEIKPKADQESDQLIED  528 (849)
Q Consensus       458 ~~qf~~~~~el~~wl~e~~~~~~~~~--~~~~~ve~~~~k~~~~-------~q~el~~v~~~g~~L~~~~~~~~~~~I~~  528 (849)
                      ..+|.+.+.++..||.+++.++...+  ...+.++..+++|+.|       .+..++.|+..|..|+..+ +++.+.|..
T Consensus         8 l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~-~~~~~~i~~   86 (323)
T 3edv_A            8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSG-HSDAATIAE   86 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcC-CCChHHHHH
Confidence            47999999999999999999886543  3444677788888866       2346899999999999865 578999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHh
Q psy4475         529 QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVES  608 (849)
Q Consensus       529 ~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~  608 (849)
                      ++..|+.+|+.|...+..|...|+.+. ....|...+.++..||.+++..+.  .+++.+...++.+.+.++.++.++..
T Consensus        87 ~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~f~~~~~e~~~Wl~~k~~~l~--~~~~~d~~~v~~l~~~h~~~~~~l~~  163 (323)
T 3edv_A           87 WKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEIFGRIQDKHKKLP--EELGRDQNTVETLQRMHTTFEHDIQA  163 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCC--CCCCSSHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc--cccccChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988 567799999999999999998884  45677888888888888888888888


Q ss_pred             hhhhHHHHHhhhhHHHHHHhhcc-hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475         609 EKPKVSQISTLAAPIVKFLKKDG-LDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAE  684 (849)
Q Consensus       609 l~~~~~~i~~~~~~l~~~~~~~~-~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E  684 (849)
                      ....+..+...+..|..   .+| ++...|...+..++.+|   ...+..|...|+.+.. ++.|+.+++++..||.+++
T Consensus       164 ~~~~v~~l~~~a~~L~~---~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~-~~~F~~~~~~l~~Wl~~~~  239 (323)
T 3edv_A          164 LGTQVRQLQEDAARLQA---AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD-KFRFFSMVRDLMLWMEDVI  239 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH---HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            88888888887776544   334 36788999999999999   7889999999999996 4699999999999999999


Q ss_pred             HHHhcCCCC--chH---HHHHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475         685 AKIQDRTLP--PQT---LIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNER  759 (849)
Q Consensus       685 ~~l~~~~~~--~~~---l~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r  759 (849)
                      ..+.+.++.  +..   +..+|+.|..||.++.+.|..+...|..|+... ++ .+..|..++..|+.||..|..+|.+|
T Consensus       240 ~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~-~~-~~~~i~~~l~~L~~~w~~l~~~w~~R  317 (323)
T 3edv_A          240 RQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARK-HY-ASEEIKEKLLQLTEKRKEMIDKWEDR  317 (323)
T ss_dssp             HHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CT-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999865432  222   236778999999999999999999999999886 54 46799999999999999999999999


Q ss_pred             HHHHH
Q psy4475         760 KKEVT  764 (849)
Q Consensus       760 ~~~Le  764 (849)
                      ...|.
T Consensus       318 ~~~L~  322 (323)
T 3edv_A          318 WEWLR  322 (323)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99885
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query849
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.16
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.15
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.07
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 98.99
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 98.94
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 98.91
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.9
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 98.86
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.84
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 98.83
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 98.81
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 98.76
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 98.71
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 98.61
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.59
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 98.54
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 98.53
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.44
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-10  Score=109.39  Aligned_cols=130  Identities=12%  Similarity=0.188  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCch---HHHHHHHHH
Q psy4475         632 LDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDR-TLPPQ---TLIQFIQQL  704 (849)
Q Consensus       632 ~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~-~~~~~---~l~~~lq~L  704 (849)
                      .....|..+++.+..+|   ...+..|...|+.++. ++.|+.+++++..||.+++..+.+. +..+.   .+..+++.|
T Consensus        19 e~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~~-~~~F~~~~~~l~~Wl~e~e~~~~~~~~~d~~~~~~~~~~h~~l   97 (156)
T d1owaa_          19 ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH-LQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSL   97 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence            34567889999999999   7889999999999886 4699999999999999999887542 11112   233678899


Q ss_pred             HHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475         705 EGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVT  764 (849)
Q Consensus       705 q~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le  764 (849)
                      +.+|..+.+.|..|...|..|+...  |+++..|+.+++.|+.+|..|...+.+|...|.
T Consensus        98 ~~ei~~~~~~~~~l~~~g~~L~~~~--~~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~L~  155 (156)
T d1owaa_          98 EAEVQTKSRLMSELEKTREERFTMG--HSAHEETKAHIEELRHLWDLLLELTLEKGDQLL  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999998864  677889999999999999999999999998874
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure