Psyllid ID: psy447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MENMLSHNTSLGSPGMTPSYSMNSVINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDLCKMYEMTGGYSTGGNNDSYYQSSSLYHHSTTTSL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHccHHHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccc
menmlshntslgspgmtpsysmnsvinscspqsgstgtplggfssnmhsmgsingmngpncmstgsmgyssnmnaaCMGGINSYNTALTtgraelaenspspgalQRVARADKTYrrsythakppysyISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSirhslsfndcfvkvprtpdkpgkgsfwtlhkdsgnmfengcylrrqkrfkddkkevirqthhksvspthhhpthhhhhhshhthhnshnthshqshdaggkkspetkphlSELAMlgltkedamsagllhsdfqqnsyhqsfhQQDSELAAMVASgrchphlippdhynhhlkqeygasavnhpfpvsrllpsaSAMSAAMAMSADSAKSIDLCKMYemtggystggnndsyyqssslyhhstttsl
menmlshntslgspgmtPSYSMNSVINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTALTTGRAElaenspspgalqrVARADKTYRRSythakppysyISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKvprtpdkpgkgsfwtlhkdsgnmfenGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDLCKMYEMTGGYSTGGNNDSYYQSSslyhhstttsl
MENMLSHNTSLGSPGMTPSYSMNSVINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQthhksvspthhhpthhhhhhshhthhnshnthshqshDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLPsasamsaamamsadsaKSIDLCKMYEMTGGYSTGGNNDsyyqssslyhhstttsl
***************************************************************************ACMGGINSYN*********************************YTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRT******GSFWTLHKDSGNMFENGCYLR***********************************************************************************************************MVASGRCHPHLIPPDHYNHHLKQEYGASAV*****************************IDLCKMYEMTGG*************************
******************************************************************************************************************************SYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYL************************************************************************************************************************************************************************************************************
**********LGSPGMTPSYSMNSVINSC********TPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKD*******************************************************KPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLPSA***********DSAKSIDLCKMYEMTGGYSTGGNNDSYYQSS***********
********************************************************************************************************************RSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDD***************************************************************************************************************************YGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDLCKMYEMT***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MENMLSHNTSLGSPGMTPSYSMNSVINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDLCKMYEMTGGYSTGGNNDSYYQSSSLYHHSTTTSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
P14734510 Protein fork head OS=Dros yes N/A 0.839 0.686 0.492 2e-78
Q17241349 Silk gland factor 1 OS=Bo N/A N/A 0.743 0.888 0.467 2e-76
P84961433 Forkhead box protein A2-B N/A N/A 0.306 0.295 0.843 4e-64
Q7T1R4434 Forkhead box protein A2 O yes N/A 0.306 0.294 0.843 9e-64
Q91765434 Forkhead box protein A2-A N/A N/A 0.306 0.294 0.843 1e-63
P35583459 Hepatocyte nuclear factor yes N/A 0.292 0.265 0.860 2e-63
Q9Y261457 Hepatocyte nuclear factor yes N/A 0.290 0.264 0.867 7e-63
Q07342409 Forkhead box protein A2 O yes N/A 0.278 0.283 0.913 1e-62
O42097415 Hepatocyte nuclear factor N/A N/A 0.299 0.301 0.84 2e-62
P55317472 Hepatocyte nuclear factor no N/A 0.498 0.440 0.559 2e-61
>sp|P14734|FKH_DROME Protein fork head OS=Drosophila melanogaster GN=fkh PE=1 SV=1 Back     alignment and function desciption
 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 201/408 (49%), Positives = 247/408 (60%), Gaps = 58/408 (14%)

Query: 49  SMGS--INGMNGPNCMSTGSMGYSS------NMNAACMG--------GINSYNTALTTGR 92
           SMG+  +N M G NCM+  SM Y+S      NM              G++    A+  G 
Sbjct: 122 SMGAAAMNSMGG-NCMTPSSMSYASMGSPLGNMGGCMAMSAASMSAAGLSGTYGAMPPGS 180

Query: 93  AELAENSPSPGALQRVARADK--TYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIY 150
            E+   SP+  +L R +R DK  TYRRSYTHAKPPYSYISLITMAIQN+PT+MLTLSEIY
Sbjct: 181 REMETGSPN--SLGR-SRVDKPTTYRRSYTHAKPPYSYISLITMAIQNNPTRMLTLSEIY 237

Query: 151 QFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENG 210
           QFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVK+PRTPDKPGKGSFWTLH DSGNMFENG
Sbjct: 238 QFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKIPRTPDKPGKGSFWTLHPDSGNMFENG 297

Query: 211 CYLRRQKRFKDDKKEVIRQTHHKSVSPTHH-----HPTHHHHHHSHHTHHNSHNTHSHQS 265
           CYLRRQKRFKD+KKE IRQ H    SP+H       P    H  SHH HH+ H+   H  
Sbjct: 298 CYLRRQKRFKDEKKEAIRQLHK---SPSHSSLEATSPGKKDHEDSHHMHHHHHSRLDHHQ 354

Query: 266 H--DAGGKKSPETKPHLSELAMLGLT-KEDAMSAGLLHSDFQQNSYHQSFH--------- 313
           H  +AGG         ++ + +L     +DA +  +LH++ +     Q  H         
Sbjct: 355 HHKEAGGAS-------IAGVNVLSAAHSKDAEALAMLHANAELCLSQQPQHVPTHHHHQH 407

Query: 314 --QQDSELAAMVASGRCHPHLIPPDHYNHH-LKQE-YGASAVNHPFPVSRLLPSASAMSA 369
              Q  EL+AM+A+ RCHP LI   H + H LKQE  G +  +HPF ++RLLP+ S    
Sbjct: 408 HQLQQEELSAMMAN-RCHPSLITDYHSSMHPLKQEPSGYTPSSHPFSINRLLPTESKADI 466

Query: 370 AMAMSADSAKSIDLCKMYEMTGGYSTGGNNDSYYQSSSLYHHSTTTSL 417
            M    D ++      +  +T  ++  G  DSYYQS   +  + TTSL
Sbjct: 467 KM---YDMSQYAGYNALSPLTNSHAALG-QDSYYQSLGYHAPAGTTSL 510
Fkh promotes terminal as opposed to segmental development. In the absence of fkh, this developmental switch does not occur. The nuclear localization of the fkh protein suggest that fkh regulates the transcription of other, subordinate, genes.
Drosophila melanogaster (taxid: 7227)
>sp|Q17241|SGF1_BOMMO Silk gland factor 1 OS=Bombyx mori GN=SGF1 PE=2 SV=1 Back     alignment and function description
>sp|P84961|FXA2B_XENLA Forkhead box protein A2-B OS=Xenopus laevis GN=foxa2-b PE=2 SV=1 Back     alignment and function description
>sp|Q7T1R4|FOXA2_XENTR Forkhead box protein A2 OS=Xenopus tropicalis GN=foxa2 PE=2 SV=1 Back     alignment and function description
>sp|Q91765|FXA2A_XENLA Forkhead box protein A2-A OS=Xenopus laevis GN=foxa2-a PE=1 SV=1 Back     alignment and function description
>sp|P35583|FOXA2_MOUSE Hepatocyte nuclear factor 3-beta OS=Mus musculus GN=Foxa2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y261|FOXA2_HUMAN Hepatocyte nuclear factor 3-beta OS=Homo sapiens GN=FOXA2 PE=1 SV=1 Back     alignment and function description
>sp|Q07342|FOXA2_DANRE Forkhead box protein A2 OS=Danio rerio GN=foxa2 PE=2 SV=1 Back     alignment and function description
>sp|O42097|FOXA2_ORYLA Hepatocyte nuclear factor 3-beta OS=Oryzias latipes GN=foxa2 PE=2 SV=1 Back     alignment and function description
>sp|P55317|FOXA1_HUMAN Hepatocyte nuclear factor 3-alpha OS=Homo sapiens GN=FOXA1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
242022659454 protein fork head, putative [Pediculus h 0.863 0.792 0.525 1e-93
342318863380 fork head domain transcription factor [N 0.817 0.897 0.530 5e-93
167466209431 fork head [Tribolium castaneum] gi|27000 0.904 0.874 0.529 4e-92
8096683431 fork head orthologue [Tribolium castaneu 0.913 0.883 0.516 9e-89
170031286438 fork head [Culex quinquefasciatus] gi|16 0.889 0.847 0.487 4e-83
157134852435 forkhead protein/ forkhead protein domai 0.947 0.908 0.476 2e-82
157134848435 forkhead protein/ forkhead protein domai 0.949 0.910 0.472 4e-82
347966347479 AGAP001671-PA [Anopheles gambiae str. PE 0.911 0.793 0.462 1e-80
195445826 652 GK10997 [Drosophila willistoni] gi|19416 0.887 0.567 0.469 7e-79
390178303481 GA10002 [Drosophila pseudoobscura pseudo 0.925 0.802 0.471 9e-78
>gi|242022659|ref|XP_002431756.1| protein fork head, putative [Pediculus humanus corporis] gi|212517081|gb|EEB19018.1| protein fork head, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 246/468 (52%), Positives = 281/468 (60%), Gaps = 108/468 (23%)

Query: 16  MTPSYSMNSV-----INSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMST----GS 66
           M  SYSMNS+     +NSCSPQSGS      GFSSNM S G ++ MNG NCMS+    GS
Sbjct: 29  MASSYSMNSMACVSSMNSCSPQSGS------GFSSNMLSSG-MSSMNG-NCMSSPMSYGS 80

Query: 67  MGYS-SNMN--AACMGG---INSYNTALT-----TGRAELAENSPSPGALQRVARADKTY 115
           +G   +NMN  A+CMGG   INSY  ALT     +   +L  +SP+  ALQR ARADKTY
Sbjct: 81  IGSPMANMNGVASCMGGMSSINSYGGALTPVSSMSNTRDLNPSSPNSAALQR-ARADKTY 139

Query: 116 RRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSL 175
           RRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSL
Sbjct: 140 RRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSL 199

Query: 176 SFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSV 235
           SFNDCFVKVPRTPDKPGKGSFWTLH DSGNMFENGCYLRRQKRFKD+KKE IRQ+H    
Sbjct: 200 SFNDCFVKVPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKDEKKEAIRQSHK--- 256

Query: 236 SPTHH-------HPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGL 288
           SP+H+        P HH      H +H S +  S +  D  G K+     H    +MLGL
Sbjct: 257 SPSHNGSVDGKKTPNHHDDVVMSHNNHKS-SLLSDKYSDKYGDKTGSNVDHGITASMLGL 315

Query: 289 -TKEDAMSAGLLHSDFQ------QNS-------------YHQSFHQQDSELAAMVASGRC 328
             K ++   G+L +  +      QN+              HQ    Q  ++AAMV   RC
Sbjct: 316 HPKVESDPLGMLQASSELCLSGNQNAHHHQQHHGSSHHQQHQQHGLQHDDIAAMV--NRC 373

Query: 329 HPHLIPPDHY-----NHHLKQEYGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDL 383
           HPHL   +H      +HHLKQE            + LLP+ S         AD       
Sbjct: 374 HPHLSLSEHQVMLQNHHHLKQE-----------PTGLLPTESK--------AD------- 407

Query: 384 CKMYEMTGGYSTGGN-------------NDSYYQSSSLYHHST-TTSL 417
            KMY+M   Y+   N             NDSYYQ SSLYH  T TTSL
Sbjct: 408 IKMYDMASQYAQYNNSLSPLPNPHTSLPNDSYYQ-SSLYHTPTGTTSL 454

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|342318863|gb|AEL22915.1| fork head domain transcription factor [Nilaparvata lugens] Back     alignment and taxonomy information
>gi|167466209|ref|NP_001034503.2| fork head [Tribolium castaneum] gi|270008139|gb|EFA04587.1| fork head [Tribolium castaneum] Back     alignment and taxonomy information
>gi|8096683|gb|AAF71998.1|AF217810_1 fork head orthologue [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170031286|ref|XP_001843517.1| fork head [Culex quinquefasciatus] gi|167869544|gb|EDS32927.1| fork head [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157134852|ref|XP_001656474.1| forkhead protein/ forkhead protein domain [Aedes aegypti] gi|108881334|gb|EAT45559.1| AAEL003173-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157134848|ref|XP_001656472.1| forkhead protein/ forkhead protein domain [Aedes aegypti] gi|108881332|gb|EAT45557.1| AAEL003163-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347966347|ref|XP_321425.4| AGAP001671-PA [Anopheles gambiae str. PEST] gi|333470101|gb|EAA01374.4| AGAP001671-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195445826|ref|XP_002070503.1| GK10997 [Drosophila willistoni] gi|194166588|gb|EDW81489.1| GK10997 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|390178303|ref|XP_001358897.3| GA10002 [Drosophila pseudoobscura pseudoobscura] gi|388859398|gb|EAL28040.3| GA10002 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
FB|FBgn0000659510 fkh "fork head" [Drosophila me 0.520 0.425 0.612 5.2e-77
UNIPROTKB|Q1PA44440 FoxA "Uncharacterized protein" 0.529 0.502 0.615 2e-65
UNIPROTKB|F1MZB6439 FOXA2 "Uncharacterized protein 0.501 0.476 0.597 3.3e-65
UNIPROTKB|D2HNY8438 PANDA_013447 "Putative unchara 0.494 0.470 0.593 6.8e-65
UNIPROTKB|Q9Y261457 FOXA2 "Hepatocyte nuclear fact 0.501 0.457 0.592 4.8e-64
UNIPROTKB|F1SAU0457 FOXA2 "Uncharacterized protein 0.501 0.457 0.592 4.8e-64
UNIPROTKB|Q7T1R4434 foxa2 "Forkhead box protein A2 0.520 0.5 0.576 1.3e-63
UNIPROTKB|F1SHK8468 FOXA1 "Uncharacterized protein 0.529 0.472 0.556 3.3e-63
UNIPROTKB|Q91765434 foxa2-a "Forkhead box protein 0.520 0.5 0.572 3.3e-63
UNIPROTKB|E2QSA5452 FOXA1 "Uncharacterized protein 0.534 0.493 0.550 4.2e-63
FB|FBgn0000659 fkh "fork head" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 666 (239.5 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
 Identities = 144/235 (61%), Positives = 168/235 (71%)

Query:     3 NMLSHNTSLGSPGMTPSYSMNSVINSCSPQSGSTGTP----LGGFSSNMHSMGSINGMNG 58
             ++L    ++ S   + S SM++ +N+    +GS G      +GG      SM S   M  
Sbjct:    92 SVLDSAAAVASMSASMSASMSASMNAS--MNGSMGAAAMNSMGGNCMTPSSM-SYASMGS 148

Query:    59 PNCMSTGSMGYSSNMNAACMG--GINSYNTALTTGRAELAENSPSPGALQRVARADK--T 114
             P     G+MG    M+AA M   G++    A+  G  E+   SP+  +L R +R DK  T
Sbjct:   149 P----LGNMGGCMAMSAASMSAAGLSGTYGAMPPGSREMETGSPN--SLGR-SRVDKPTT 201

Query:   115 YRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHS 174
             YRRSYTHAKPPYSYISLITMAIQN+PT+MLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHS
Sbjct:   202 YRRSYTHAKPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHS 261

Query:   175 LSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQ 229
             LSFNDCFVK+PRTPDKPGKGSFWTLH DSGNMFENGCYLRRQKRFKD+KKE IRQ
Sbjct:   262 LSFNDCFVKIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKDEKKEAIRQ 316
GO:0005634 "nucleus" evidence=ISS;NAS;IDA
GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;NAS
GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP;TAS
GO:0007439 "ectodermal digestive tract development" evidence=TAS
GO:0007435 "salivary gland morphogenesis" evidence=IMP;TAS
GO:0043066 "negative regulation of apoptotic process" evidence=IMP;TAS
GO:0007432 "salivary gland boundary specification" evidence=NAS
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA;TAS
GO:0001706 "endoderm formation" evidence=TAS
GO:0007431 "salivary gland development" evidence=IMP;NAS
GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=IDA
GO:0043069 "negative regulation of programmed cell death" evidence=IDA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0030308 "negative regulation of cell growth" evidence=IMP
GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP
GO:0042023 "DNA endoreduplication" evidence=IMP
GO:0009790 "embryo development" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0007389 "pattern specification process" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0019904 "protein domain specific binding" evidence=IBA
UNIPROTKB|Q1PA44 FoxA "Uncharacterized protein" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZB6 FOXA2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D2HNY8 PANDA_013447 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y261 FOXA2 "Hepatocyte nuclear factor 3-beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAU0 FOXA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T1R4 foxa2 "Forkhead box protein A2" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHK8 FOXA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q91765 foxa2-a "Forkhead box protein A2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSA5 FOXA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P23512FOXA1_RATNo assigned EC number0.55900.49880.4463yesN/A
P14734FKH_DROMENo assigned EC number0.49260.83930.6862yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
pfam0025096 pfam00250, Fork_head, Fork head domain 1e-64
smart0033989 smart00339, FH, FORKHEAD 1e-51
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 6e-50
COG5025610 COG5025, COG5025, Transcription factor of the Fork 4e-19
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 3e-14
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 3e-05
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 3e-04
pfam08430137 pfam08430, Fork_head_N, Forkhead N-terminal region 3e-04
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 4e-04
pfam10986161 pfam10986, DUF2796, Protein of unknown function (D 7e-04
PRK09545311 PRK09545, znuA, high-affinity zinc transporter per 0.001
cd01019286 cd01019, ZnuA, Zinc binding protein ZnuA 0.001
pfam04592238 pfam04592, SelP_N, Selenoprotein P, N terminal reg 0.002
pfam10986161 pfam10986, DUF2796, Protein of unknown function (D 0.004
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  201 bits (514), Expect = 1e-64
 Identities = 76/96 (79%), Positives = 87/96 (90%)

Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
           KPPYSYI+LITMAIQ SP KMLTLSEIYQ+IMDLFP+YRQN+Q WQNSIRH+LS N CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
           KVPR+PDKPGKGS+WTL  +S NMFENG YL+R+KR
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|219837 pfam08430, Fork_head_N, Forkhead N-terminal region Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796) Back     alignment and domain information
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed Back     alignment and domain information
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA Back     alignment and domain information
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region Back     alignment and domain information
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
KOG3563|consensus454 100.0
KOG3562|consensus277 100.0
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG2294|consensus454 100.0
KOG4385|consensus581 99.85
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.81
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.48
PF0935465 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 98.08
PF08430136 Fork_head_N: Forkhead N-terminal region; InterPro: 96.8
PF0053877 Linker_histone: linker histone H1 and H5 family; I 93.28
smart0052666 H15 Domain in histone families 1 and 5. 90.39
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 87.1
PF0506672 HARE-HTH: HB1, ASXL, restriction endonuclease HTH 82.31
>KOG3563|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-72  Score=557.50  Aligned_cols=379  Identities=43%  Similarity=0.604  Sum_probs=256.7

Q ss_pred             ccCCCCCCCCCCCcccccccc------cccCCCCCCCCCCC----CCCCCcccc-------c--------ccccCCCCCC
Q psy447            6 SHNTSLGSPGMTPSYSMNSVI------NSCSPQSGSTGTPL----GGFSSNMHS-------M--------GSINGMNGPN   60 (417)
Q Consensus         6 ~mn~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~-------~--------~~~~~~~~~~   60 (417)
                      -||.+++++.|+..|.||+|+      +.+++.++++++-.    ++++.+...       .        +.+|+| | |
T Consensus        33 N~~s~~~~~~~nsymtMn~~~~~sg~~g~~~aas~~~S~~d~A~~a~~sp~~~agms~~~nag~~gs~~aAg~~~m-g-~  110 (454)
T KOG3563|consen   33 NMNSMLPENKMNSYMTMNPMGTPSGTSGNMPAASFNSSSLDTAMGAGMSPAAPAGMSFGANAGMNGSSGAAGVNAM-G-N  110 (454)
T ss_pred             CccccCchhhhhhheeeccccCCCCCCCCcCCcccccccchhhhccCCCcccccCCCccccccccCccchhhcccC-C-c
Confidence            367888888888844499984      23344444444431    222221000       0        124555 4 6


Q ss_pred             CCCCCCCCCCCCCcccc--ccCCCccCcccccccccccCCCCCchhhhhhhhccccccCcCCCCCCCCCHHHHHHHHHhc
Q psy447           61 CMSTGSMGYSSNMNAAC--MGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQN  138 (417)
Q Consensus        61 ~~~~~~~g~~~~~~~~~--~~~l~s~~~~~~s~~~~l~~~sp~~~~~~~~~r~~k~~rr~~~~~KPPySYa~LI~~AI~s  138 (417)
                      |++.+.|+-.+.+.++.  .+||.++..+.. +.......+|..-.-.| ....|+|||++.+.||||||+.||+|||+.
T Consensus       111 ~lsPs~msplGa~aAasma~~gl~~yg~~~~-~s~s~~a~sp~~l~rsr-g~~pktyRRsY~haKPPYSYISLITMAIQ~  188 (454)
T KOG3563|consen  111 GLSPSNMSPLGAQAAASMATSGLGPYGAMNG-RSMSPMAYSPADLGRSR-GQDPKTYRRSYTHAKPPYSYISLITMAIQQ  188 (454)
T ss_pred             ccCccccCcchhhhhhhhhccccccccccCC-CccCccccCcccccccc-CCCCceeeccccCCCCChhHHHHHHHHHHh
Confidence            66666553223332222  234433332221 11111222333322222 335689999999999999999999999999


Q ss_pred             CCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEecCCCcccccccchhhcccc
Q psy447          139 SPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR  218 (417)
Q Consensus       139 SP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLdPe~~~~fenG~~~rRrkr  218 (417)
                      +|.|+|||+|||+||++.|||||.+.++|||||||.||+|+|||||+|.+|+||||+||+|+|+++++||||||+||+||
T Consensus       189 ~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLHpdsGNMFENGCYLRRQKR  268 (454)
T KOG3563|consen  189 APSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKR  268 (454)
T ss_pred             CCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceeecCCcCcccccchhehhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHhhccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhcccchhhhhhhhc
Q psy447          219 FKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGL  298 (417)
Q Consensus       219 ~kr~k~e~~Rq~~~~s~s~~~~~~~~~~~~~~ss~~~~~~~~hs~~~~d~~~~~r~~tss~aS~la~l~~~~~d~~~~~~  298 (417)
                      ||.+|++.++...-.+-+............     .......++..+--.+.   +..++.++....+|+. ++.+.+ .
T Consensus       269 FK~ekk~~~~~~~gas~s~~~~~~~~~k~~-----~~~~~~t~p~~~sp~Ga---pap~~~ae~~~~~ha~-~a~~ga-~  338 (454)
T KOG3563|consen  269 FKCEKKEASKGGSGASGSGLNGTGGGPKST-----TDAATATSPPQPSPAGA---PAPSPEAEPKEGLHAV-DATGGA-L  338 (454)
T ss_pred             hhhhhhhccccCCCCccccccccCCCcccc-----cCcccCCCCCCCCCCCC---CCCCcccchhhhhhhh-hhcccc-c
Confidence            999999887433222222211111111100     00000011111111111   5566678888889988 577776 3


Q ss_pred             cccccccccccccchh-hhHHHHHHHhcCCcccCcCCCCccc-cccccccCCCCCCCCcccccccCchhhhHHHhhhhcc
Q psy447          299 LHSDFQQNSYHQSFHQ-QDSELAAMVASGRCHPHLIPPDHYN-HHLKQEYGASAVNHPFPVSRLLPSASAMSAAMAMSAD  376 (417)
Q Consensus       299 ~~~~~~~~~~h~~hh~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (417)
                      .++..+-+ +++++|+ +++++.|+++ ++||+++|. +|-. +|||+|++|+ .+|||+|++|||+.+-          
T Consensus       339 ~l~~~pas-~t~~~~~~~~pg~~~s~~-~~~~~~~~~-~h~sq~~lk~~~~Ya-fnhpfsinnlmss~q~----------  404 (454)
T KOG3563|consen  339 ELGLTPAS-STPPPTGLSQPGSVASSA-ATLGAHGLA-PHTSQAHLKLDPHYA-FNHPFSINNLMSSSQQ----------  404 (454)
T ss_pred             ccCCCCcc-cCCCCcCCCCcchhhhhh-hccCCCcCC-CCccccccccCCCcc-ccCchhhhhhcccccc----------
Confidence            44444443 3344444 5788888886 999999999 4655 5999999999 9999999999998332          


Q ss_pred             ccccccccceeecc---cCcc-CCC---------CCCcccccCccccCCCCCC
Q psy447          377 SAKSIDLCKMYEMT---GGYS-TGG---------NNDSYYQSSSLYHHSTTTS  416 (417)
Q Consensus       377 ~~~~~~~~~~~~~~---~~~~-~~~---------~~~~~~~~~~~~~~~~~~~  416 (417)
                       . -|.|+|||||+   .||. +++         .+++|||  ++||.+..+|
T Consensus       405 -~-~kld~k~Y~~~~qY~gyg~a~gp~tn~~p~~~~~syYQ--g~Ysrp~~nt  453 (454)
T KOG3563|consen  405 -A-HKLDVKAYEQTSQYPGYGSALGPATNGEPSALEGSYYQ--GLYSRPLLNT  453 (454)
T ss_pred             -c-cccchhhhhhhcccCCcCcccCccccCCccccccceee--eeccccCCCC
Confidence             1 38999999996   5663 333         6789999  4599998876

>KOG3562|consensus Back     alignment and domain information
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF09354 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 This presumed domain is found in the C-terminal region of Hepatocyte Nuclear Factor 3 alpha and beta chains Back     alignment and domain information
>PF08430 Fork_head_N: Forkhead N-terminal region; InterPro: IPR013638 The region described in this entry is found towards the N terminus of various eukaryotic fork head/HNF-3-related transcription factors (which contain the IPR001766 from INTERPRO domain) Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 1e-50
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 1e-36
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 6e-32
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 9e-29
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 3e-24
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 5e-21
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 1e-20
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 6e-20
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 2e-15
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 5e-14
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 6e-14
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 2e-13
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 1e-11
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 4e-11
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 5e-11
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 7e-11
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 2e-10
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 2e-10
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 88/100 (88%), Positives = 94/100 (94%)
Query: 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDC 180
           HAKPPYSYISLITMAIQ +P KMLTLSEIYQ+IMDLFP+YR+NQQRWQNSIRHSLSFNDC
Sbjct: 1   HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 60
Query: 181 FVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFK 220
           FVKV R+PDKPGKGS+W LH  SGNMFENGCYLRRQKRFK
Sbjct: 61  FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 5e-72
2c6y_A111 Forkhead box protein K2; transcription regulation, 2e-70
2hdc_A97 Protein (transcription factor); structure, dyanami 2e-69
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 7e-69
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 5e-66
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 7e-58
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 7e-52
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 3e-50
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 3e-49
3bpy_A85 FORK head domain, forkhead transcription factor FO 1e-48
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 3e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1pq4_A291 Periplasmic binding protein component of AN ABC T 9e-05
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
 Score =  220 bits (562), Expect = 5e-72
 Identities = 88/100 (88%), Positives = 94/100 (94%)

Query: 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDC 180
           HAKPPYSYISLITMAIQ +P KMLTLSEIYQ+IMDLFP+YR+NQQRWQNSIRHSLSFNDC
Sbjct: 1   HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 60

Query: 181 FVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFK 220
           FVKV R+PDKPGKGS+W LH  SGNMFENGCYLRRQKRFK
Sbjct: 61  FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=3.5e-44  Score=303.19  Aligned_cols=101  Identities=87%  Similarity=1.466  Sum_probs=98.3

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEec
Q psy447          121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLH  200 (417)
Q Consensus       121 ~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLd  200 (417)
                      +.||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus         1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~   80 (102)
T 1vtn_C            1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH   80 (102)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred             CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence            58999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             CCCcccccccchhhccccccc
Q psy447          201 KDSGNMFENGCYLRRQKRFKD  221 (417)
Q Consensus       201 Pe~~~~fenG~~~rRrkr~kr  221 (417)
                      |+++++|++|.++|||+|++.
T Consensus        81 p~~~~~f~~g~~~rr~~~~~~  101 (102)
T 1vtn_C           81 PSSGNMFENGCYLRRQKRFKL  101 (102)
T ss_dssp             GGGCSTTCSSCSSSCSSCCCC
T ss_pred             cCHHHHhhcCCeecccccccc
Confidence            999999999999999999874
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 3e-48
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 3e-47
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 8e-46
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 3e-36
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 1e-33
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 2e-33
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  157 bits (399), Expect = 3e-48
 Identities = 62/96 (64%), Positives = 75/96 (78%)

Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
           KPPYSYI+LITMAI  SP K LTLS I +FI + FP+YR+    WQNSIRH+LS NDCFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
           K+PR P  PGKG++WTL   S +MF+NG +LRR+KR
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 89.72
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.4
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.07
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-41  Score=279.47  Aligned_cols=97  Identities=64%  Similarity=1.176  Sum_probs=93.7

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEecC
Q psy447          122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHK  201 (417)
Q Consensus       122 ~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLdP  201 (417)
                      .||||||++||++||+++|+++|||+|||+||+++|||||.+.+|||||||||||+|+||+||+|..+++|||+||+|+|
T Consensus         1 vKPp~sY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p   80 (97)
T d2hdca_           1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CCCCCcHHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECc
Confidence            48999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             CCcccccccchhhcccc
Q psy447          202 DSGNMFENGCYLRRQKR  218 (417)
Q Consensus       202 e~~~~fenG~~~rRrkr  218 (417)
                      +.++.|++|.++|||+|
T Consensus        81 ~~~~~~~~~~~~rrrkr   97 (97)
T d2hdca_          81 QSEDMFDNGSFLRRRKR   97 (97)
T ss_dssp             THHHHHHHSCCCSSSCC
T ss_pred             cHHHHhhcCCccccCCC
Confidence            99999999999888765
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure