Psyllid ID: psy4482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPAAPAQSD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHcccccccccccEEccccHHcccccccccccccEccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MESLSQRTKAillnpryktefcrnidELGVCRYslkcqfahhpgellpkfthhphyrtqlcrayhkagycsfgarcifiheereisppdakhnpriiyvnpeyeacctrdtQHIRRyerhnatnqpaapaqsd
Flexible Loop (DISEMBL)
meslsqrtkaillnprykteFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEereisppdakhNPRIIYVNPEYEACCTRDTQHIRRYERhnatnqpaapaqsd
Low Complexity Region (SEG)
MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPAAPAQSD
Disordered region (IsUnstruct)
*********AILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI******HNPRIIYVNPEYEACCTRDTQHIR******************
Disordered Region (DISOPRED)
********************FCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIH*****************************************************
Disordered Region (DISEMBL)
MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERH*************
Disordered Region (DISPRO)
**************PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE***************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPAAPAQSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q7ZXW9	363	Zinc finger protein 36, C	N/A	N/A	0.593	0.217	0.506	1e-15
P47974	494	Zinc finger protein 36, C	yes	N/A	0.676	0.182	0.435	2e-15
Q805B4	364	Zinc finger protein 36, C	N/A	N/A	0.593	0.217	0.506	2e-15
Q07352	338	Zinc finger protein 36, C	no	N/A	0.511	0.201	0.536	3e-15
P17431	338	Zinc finger protein 36, C	no	N/A	0.511	0.201	0.536	4e-15
P23950	338	Zinc finger protein 36, C	no	N/A	0.511	0.201	0.536	4e-15
A4IIN5	333	Zinc finger protein 36, C	no	N/A	0.593	0.237	0.493	6e-15
P47973	320	Tristetraprolin OS=Rattus	no	N/A	0.511	0.212	0.536	1e-14
P23949	367	Zinc finger protein 36, C	no	N/A	0.511	0.185	0.536	1e-14
P53781	324	Tristetraprolin OS=Bos ta	no	N/A	0.511	0.209	0.521	5e-14

>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 131 RYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 189

Query: 76  CIFIH--EEREISPPDAKHNPRI 96
           C FIH  EER  + P A   P++
Sbjct: 190 CHFIHNAEERRQA-PGAGERPKL 211

Required for tubulogenesis during pronephros development.
Xenopus laevis (taxid: 8355)

>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 11/101 (10%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 211

Query: 76  CIFIH--EEREISPPDAKHNPRIIYVNPEYEACCTRDTQHI 114
           C FIH  +ER  +P              +  A  TRD  H+
Sbjct: 212 CHFIHNADERRPAPSGGASG--------DLRAFGTRDALHL 244

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Homo sapiens (taxid: 9606)

>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 133 RYKTELCRPFEENGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 191

Query: 76  CIFIH--EEREISPPDAKHNPRI 96
           C FIH  EER  + P A   P++
Sbjct: 192 CHFIHNAEERRQA-PGAGERPKL 213

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 173 CHFIHNAEE 181

Probable regulatory protein involved in regulating the response to growth factors.

Homo sapiens (taxid: 9606)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 173 CHFIHNAEE 181

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 173 CHFIHNAEE 181

Probable regulatory protein involved in regulating the response to growth factors.

Mus musculus (taxid: 10090)

>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 101 RYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 159

Query: 76  CIFIH--EEREISPPDAKHNPRI 96
           C  IH  EER  + P A   P++
Sbjct: 160 CHLIHNAEERRQA-PGAGERPKL 181

Required for tubulogenesis during pronephros development.

Xenopus tropicalis (taxid: 8364)

>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR   E G CRY  KCQFAH PGEL  +   HP Y+T+LC  ++  G C +G+R
Sbjct: 96  RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 155 CHFIHNPTE 163

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Rattus norvegicus (taxid: 10116)

>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 126 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 184

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 185 CHFIHNADE 193

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Mus musculus (taxid: 10090)

>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR   E G CRY  KCQFAH  GEL  + + HP Y+T+LC  ++  G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 159

Query: 76  CIFIHEERE 84
           C FIH   E
Sbjct: 160 CHFIHNPSE 168

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
167524835	391	hypothetical protein [Monosiga brevicoll	0.669	0.227	0.467	9e-16
403414935	2146	predicted protein [Fibroporia radiculosa	0.578	0.035	0.512	2e-15
410926251	398	PREDICTED: zinc finger protein 36, C3H1	0.639	0.213	0.465	5e-15
47204423	477	unnamed protein product [Tetraodon nigro	0.586	0.163	0.506	6e-15
91080779	250	PREDICTED: similar to Tis11-like protein	0.518	0.276	0.528	7e-15
348508156	404	PREDICTED: hypothetical protein LOC10070	0.639	0.210	0.453	9e-15
327278691	480	PREDICTED: zinc finger protein 36, C3H1	0.706	0.195	0.443	1e-14
270005438	213	hypothetical protein TcasGA2_TC007496 [T	0.518	0.323	0.528	1e-14
391330077	354	PREDICTED: uncharacterized protein LOC10	0.721	0.271	0.405	1e-14
115313847	335	Zgc:162730 protein [Danio rerio]	0.631	0.250	0.477	2e-14

>gi|167524835|ref|XP_001746753.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775023|gb|EDQ88649.1| predicted protein [Monosiga brevicollis MX1]

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 5   SQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAY 64
           S  + A   N R+KTE CR+    G CRY  KCQFAH   EL P    HP Y+T+LCR +
Sbjct: 55  SSSSNAPTSNNRFKTELCRSWSNTGACRYGDKCQFAHGEAELRP-LQRHPKYKTELCRTF 113

Query: 65  HKAGYCSFGARCIFIHEEREISPPDAKHNPRI 96
           H  G C +G RC F+HE  E+     KH+PR 
Sbjct: 114 HTQGVCPYGPRCHFVHETEEVK--QRKHHPRT 143

Source: Monosiga brevicollis MX1

Species: Monosiga brevicollis

Genus: Monosiga

Family: Codonosigidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|403414935|emb|CCM01635.1| predicted protein [Fibroporia radiculosa]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 17   YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
            YKTE CR+ +E G CRYS KCQFAH   EL  K + HP Y+T++CR +  +G C +G RC
Sbjct: 1837 YKTELCRSWEEKGTCRYSAKCQFAHGEEEL-RKVSRHPKYKTEICRTFWVSGSCPYGKRC 1895

Query: 77   IFIHEEREIS--PPDAKHNP 94
             FIH E   S  PP A   P
Sbjct: 1896 CFIHTELPASGPPPGADGTP 1915

Source: Fibroporia radiculosa

Species: Fibroporia radiculosa

Genus: Fibroporia

Family: Polyporaceae

Order: Polyporales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|410926251|ref|XP_003976592.1| PREDICTED: zinc finger protein 36, C3H1 type-like 1-like [Takifugu rubripes]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    + HP Y+T+LCR +H  G+C +GAR
Sbjct: 151 RYKTELCRTYEESGTCKYGTKCQFAHGLDELR-GISRHPKYKTELCRTFHTIGFCPYGAR 209

Query: 76  CIFIHEEREISPPDAKHNPRIIYVNP 101
           C F+H   E SP     +P+   + P
Sbjct: 210 CHFVHNADEASPSPGAASPQRPKLRP 235

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47204423|emb|CAG14799.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 8   TKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKA 67
           T A  ++ RYKTE CR  +E G C+Y  KCQFAH   EL    + HP Y+T+LCR +H  
Sbjct: 139 TPAPHISTRYKTELCRTYEESGTCKYGTKCQFAHGVDEL-RGISRHPKYKTELCRTFHTI 197

Query: 68  GYCSFGARCIFIHEEREIS 86
           G+C +GARC FIH   E+S
Sbjct: 198 GFCPYGARCHFIHNADELS 216

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91080779|ref|XP_968440.1| PREDICTED: similar to Tis11-like protein [Tribolium castaneum]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E GVC+Y  KCQFAH   EL      HP Y+T+LCR YH  G+C +G R
Sbjct: 96  RYKTELCRPYEEFGVCKYGDKCQFAHGGAELR-SLARHPKYKTELCRTYHTVGFCPYGPR 154

Query: 76  CIFIHEEREI 85
           C F+H + E+
Sbjct: 155 CHFVHNQDEV 164

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348508156|ref|XP_003441621.1| PREDICTED: hypothetical protein LOC100704231 [Oreochromis niloticus]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 3   SLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCR 62
           ++S +T+ ++ + RYKTE CR   E G C+Y  KCQFAH   EL   +  HP Y+T+ CR
Sbjct: 122 TVSAQTQPMVSSNRYKTELCRGFQETGSCKYGSKCQFAHGEAELRGLY-RHPKYKTEPCR 180

Query: 63  AYHKAGYCSFGARCIFIHEEREISPP 88
            ++  GYC +G+RC FIHEE+    P
Sbjct: 181 TFYNFGYCPYGSRCHFIHEEKISDAP 206

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327278691|ref|XP_003224094.1| PREDICTED: zinc finger protein 36, C3H1 type-like 2-like [Anolis carolinensis]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct: 170 RYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 228

Query: 76  CIFIH--EEREISPPDAKHNPRIIYVNPEYEACCTRD 110
           C FIH  +ER  +PP       +    P   +   RD
Sbjct: 229 CHFIHNADERRPAPPSGSATGDLRAFGPPSTSSSIRD 265

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270005438|gb|EFA01886.1| hypothetical protein TcasGA2_TC007496 [Tribolium castaneum]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E GVC+Y  KCQFAH   EL      HP Y+T+LCR YH  G+C +G R
Sbjct: 59  RYKTELCRPYEEFGVCKYGDKCQFAHGGAELR-SLARHPKYKTELCRTYHTVGFCPYGPR 117

Query: 76  CIFIHEEREI 85
           C F+H + E+
Sbjct: 118 CHFVHNQDEV 127

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391330077|ref|XP_003739491.1| PREDICTED: uncharacterized protein LOC100902394 [Metaseiulus occidentalis]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 16  RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
           RYKTE CR  +E G+C+Y  +CQFAH   EL      HP Y++QLCR +H  G C +G R
Sbjct: 92  RYKTELCRPFEENGMCKYGARCQFAHGAAELR-TLARHPKYKSQLCRTFHSNGLCPYGHR 150

Query: 76  CIFIHEEREISPPDAKHNPRIIYVNPEYEACCT-RDTQHIRRYERH 120
           C FIH + EI P        ++ ++P      +  D  +IR  E H
Sbjct: 151 CHFIHNQDEIRP--------VVPLSPTMHTNQSFNDASNIRGNESH 188

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115313847|gb|AAI24447.1| Zgc:162730 protein [Danio rerio]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 10  AILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGY 69
           A L + RYKTE CR+  E G C+Y  KCQFAH   EL   +  HP Y+TQ CR +++ GY
Sbjct: 105 ATLPSNRYKTELCRSFQEHGSCKYGAKCQFAHGENELRGLY-RHPKYKTQACRTFYQFGY 163

Query: 70  CSFGARCIFIHEEREISPPDAKHNPRII 97
           C +G+RC FIHEE+      ++ NPR +
Sbjct: 164 CPYGSRCHFIHEEKSSL---SEQNPRQL 188

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
ZFIN|ZDB-GENE-030131-6366	336	zgc:162730 "zgc:162730" [Danio	0.849	0.336	0.415	1.2e-19
UNIPROTKB|Q7ZXW9	363	zfp36l2-A "Zinc finger protein	0.706	0.258	0.448	1.1e-18
ZFIN|ZDB-GENE-030131-2391	348	zfp36l1b "zinc finger protein	0.578	0.221	0.525	2.3e-18
UNIPROTKB|Q805B4	364	zfp36l2-B "Zinc finger protein	0.669	0.244	0.473	2.4e-18
ZFIN|ZDB-GENE-990806-20	319	cth1 "cth1" [Danio rerio (taxi	0.639	0.266	0.472	2.8e-18
UNIPROTKB|A4IIN5	333	zfp36l2 "Zinc finger protein 3	0.669	0.267	0.462	4.9e-18
ZFIN|ZDB-GENE-030131-9860	374	zfp36l1a "zinc finger protein	0.541	0.192	0.533	2.3e-17
RGD|620722	320	Zfp36 "zinc finger protein 36"	0.571	0.237	0.5	2.5e-17
UNIPROTKB|P47973	320	Zfp36 "Tristetraprolin" [Rattu	0.571	0.237	0.5	2.5e-17
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.503	0.380	0.557	3.2e-17

ZFIN|ZDB-GENE-030131-6366 zgc:162730 "zgc:162730" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 49/118 (41%), Positives = 68/118 (57%)

Query:    10 AILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGY 69
             A L + RYKTE CR+  E G C+Y  KCQFAH   EL   +  HP Y+TQ CR +++ GY
Sbjct:   106 ATLPSNRYKTELCRSFQEHGSCKYGAKCQFAHGENELRGLY-RHPKYKTQACRTFYQFGY 164

Query:    70 CSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPA 127
             C +G+RC FIHEE+      ++ NPR +  +  + A  TR +     YE  + T  P+
Sbjct:   165 CPYGSRCHFIHEEKSSL---SEQNPRQLRQSVSF-AGFTRSSSPPSSYESLSFTRAPS 218

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q7ZXW9 zfp36l2-A "Zinc finger protein 36, C3H1 type-like 2-A" [Xenopus laevis (taxid:8355)]

 Score = 227 (85.0 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/98 (44%), Positives = 58/98 (59%)

Query:     1 MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQL 60
             ++   Q+  A + + RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+L
Sbjct:   116 LQQQQQKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTEL 174

Query:    61 CRAYHKAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
             CR +H  G+C +G RC FIH  EER    P A   P++
Sbjct:   175 CRTFHTIGFCPYGPRCHFIHNAEERR-QAPGAGERPKL 211

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

ZFIN|ZDB-GENE-030131-2391 zfp36l1b "zinc finger protein 36, C3H type-like 1b" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 42/80 (52%), Positives = 49/80 (61%)

Query:    16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
             RYKTE CR  +E G C+Y  KCQFAH   EL      HP Y+T+LCR +H  GYC +G R
Sbjct:   137 RYKTELCRPFEENGTCKYGDKCQFAHGMHELR-SLNRHPKYKTELCRTFHSIGYCPYGPR 195

Query:    76 CIFIH--EEREISPPDAKHN 93
             C FIH  EER   PP +  N
Sbjct:   196 CHFIHNAEERRGPPPLSSFN 215

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q805B4 zfp36l2-B "Zinc finger protein 36, C3H1 type-like 2-B" [Xenopus laevis (taxid:8355)]

 Score = 224 (83.9 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 44/93 (47%), Positives = 56/93 (60%)

Query:     6 QRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYH 65
             Q+  A + + RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H
Sbjct:   123 QKAGAQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFH 181

Query:    66 KAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
               G+C +G RC FIH  EER    P A   P++
Sbjct:   182 TIGFCPYGPRCHFIHNAEERR-QAPGAGERPKL 213

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0039020 "pronephric nephron tubule development" evidence=IMP

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=IMP

GO:0072080 "nephron tubule development" evidence=IMP

ZFIN|ZDB-GENE-990806-20 cth1 "cth1" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 43/91 (47%), Positives = 57/91 (62%)

Query:     1 MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL-LPKFTHHPHYRTQ 59
             +ES S      L + RYKTE C    E G C+Y+ +CQFAH   +L +P  + HP Y+T+
Sbjct:    44 VESPSPPMTPWLCSTRYKTELCSRYAETGTCKYAERCQFAHGLHDLHVP--SRHPKYKTE 101

Query:    60 LCRAYHKAGYCSFGARCIFIH---EEREISP 87
             LCR YH AGYC +G RC+F+H   E+R I P
Sbjct:   102 LCRTYHTAGYCVYGTRCLFVHNLKEQRPIRP 132

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A4IIN5 zfp36l2 "Zinc finger protein 36, C3H1 type-like 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 219 (82.2 bits), Expect = 4.9e-18, P = 4.9e-18
 Identities = 43/93 (46%), Positives = 55/93 (59%)

Query:     6 QRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYH 65
             Q+  A + + RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H
Sbjct:    91 QKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFH 149

Query:    66 KAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
               G+C +G RC  IH  EER    P A   P++
Sbjct:   150 TIGFCPYGPRCHLIHNAEERR-QAPGAGERPKL 181

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

ZFIN|ZDB-GENE-030131-9860 zfp36l1a "zinc finger protein 36, C3H type-like 1a" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 40/75 (53%), Positives = 48/75 (64%)

Query:    16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
             RYKTE CR  +E G C+Y  KCQFAH   EL    + HP Y+T+LCR +H  G+C +G R
Sbjct:   144 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLSRHPKYKTELCRTFHTIGFCPYGPR 202

Query:    76 CIFIH--EEREISPP 88
             C FIH  EER   PP
Sbjct:   203 CHFIHNAEERRGPPP 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|620722 Zfp36 "zinc finger protein 36" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/78 (50%), Positives = 48/78 (61%)

Query:    16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
             RYKTE CR   E G CRY  KCQFAH PGEL  +   HP Y+T+LC  ++  G C +G+R
Sbjct:    96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154

Query:    76 CIFIHEERE-ISPPDAKH 92
             C FIH   E ++ P   H
Sbjct:   155 CHFIHNPTEDLALPGQPH 172

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISO

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS;IDA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=IEA;ISO;ISS

GO:0007243 "intracellular protein kinase cascade" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA;ISO;ISS

GO:0017091 "AU-rich element binding" evidence=ISO;ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019957 "C-C chemokine binding" evidence=IEA;ISO

GO:0032680 "regulation of tumor necrosis factor production" evidence=IEA;ISO;ISS

GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA;ISO

GO:0043488 "regulation of mRNA stability" evidence=ISO

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

GO:0050728 "negative regulation of inflammatory response" evidence=IEA;ISO

GO:0050779 "RNA destabilization" evidence=IEA;ISO

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA;ISO;ISS

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA;ISO;ISS

GO:0071889 "14-3-3 protein binding" evidence=IEA;ISO;ISS

UNIPROTKB|P47973 Zfp36 "Tristetraprolin" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/78 (50%), Positives = 48/78 (61%)

Query:    16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
             RYKTE CR   E G CRY  KCQFAH PGEL  +   HP Y+T+LC  ++  G C +G+R
Sbjct:    96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154

Query:    76 CIFIHEERE-ISPPDAKH 92
             C FIH   E ++ P   H
Sbjct:   155 CHFIHNPTEDLALPGQPH 172

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019957 "C-C chemokine binding" evidence=IEA

GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0050779 "RNA destabilization" evidence=IEA

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 39/70 (55%), Positives = 46/70 (65%)

Query:    16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
             RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G R
Sbjct:    92 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 150

Query:    76 CIFIH--EER 83
             C FIH  EER
Sbjct:   151 CHFIHNAEER 160

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	7e-07
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	2e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-05
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	5e-04

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 17  YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH-HPHYRTQLCRAYHKAGYCSFGAR 75
           ++TE C N ++ G C Y L+C F H     +  +      Y    CR   K G    G  
Sbjct: 272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGA 331

Query: 76  CIFIHEER 83
                +++
Sbjct: 332 VCKSFDKK 339

Length = 351

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 17  YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
           YKTE  R+  E+  CRY  K  FA H   +      HP Y+T+    +   GY  +  RC
Sbjct: 113 YKTEMLRSSTEIPYCRYPDKNPFA-HSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRC 171

Query: 77  IFIH 80
            FI 
Sbjct: 172 CFIS 175

Length = 351

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 56 YRTQLCRAYHKAGYCSFGARCIFIH 80
          Y+T+LCR + + G C +G RC F H
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAH 25

Length = 27

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 15  PRYKT--EFCRNIDELGVCRYSL---KCQFA---HHPGELLPKFTHHPHYRTQLCRAYHK 66
           P YKT  E C +    G C Y +   KCQFA   H   EL  K      +RT+ C  + K
Sbjct: 224 PLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQN-FRTEPCINWEK 282

Query: 67  AGYCSFGARCIFIHEEREISPPDAKHN 93
           +GYC +G RC F H +        + +
Sbjct: 283 SGYCPYGLRCCFKHGDDSDIEMYEEAS 309

Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG1677|consensus	332		99.67
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.21
KOG1595|consensus	528		99.02
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.95
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.81
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.67
KOG2333|consensus	614		98.63
KOG1040|consensus	325		98.52
smart00356	27	ZnF_C3H1 zinc finger.	98.5
KOG1677|consensus	332		98.31
smart00356	27	ZnF_C3H1 zinc finger.	98.19
KOG2494|consensus	331		98.08
KOG1595|consensus	528		97.95
KOG1763|consensus	343		97.9
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.49
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.4
KOG1492|consensus	377		97.16
KOG1040|consensus	325		97.11
KOG2185|consensus	486		96.78
KOG1492|consensus	377		96.56
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.53
KOG2185|consensus	486		96.53
COG5152	259	Uncharacterized conserved protein, contains RING a	96.47
COG5152	259	Uncharacterized conserved protein, contains RING a	96.34
KOG4791|consensus	667		95.88
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.86
KOG2494|consensus	331		95.63
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	95.39
KOG1813|consensus	313		94.55
KOG1813|consensus	313		93.41
KOG2202|consensus	260		93.29
KOG1039|consensus	344		91.72
KOG1039|consensus	344		90.76
KOG1763|consensus	343		90.42
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	88.41
KOG4791|consensus	667		85.05
KOG2202|consensus	260		81.2

>KOG1677|consensus

Probab=99.67  E-value=3.6e-17  Score=132.57  Aligned_cols=80  Identities=39%  Similarity=0.823  Sum_probs=70.8

Q ss_pred             ccccCCCCcccccccccccCCCCCC-CCCCccCCCCCCCCC-----ccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482           9 KAILLNPRYKTEFCRNIDELGVCRY-SLKCQFAHHPGELLP-----KFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus         9 ~~~~~~~~~Kt~lC~~f~~~G~C~~-G~~C~FaH~~~e~~~-----~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      ........+||.+|.+|...|.|+| |++|+|+|+.++++.     ....+++|||++|..|+.+|.|+||.+|+|+|+.
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            4466778899999999999999999 999999999999982     3456789999999999999999999999999998


Q ss_pred             CCCCCC
Q psy4482          83 REISPP   88 (133)
Q Consensus        83 ~~~~~~   88 (133)
                      .+....
T Consensus       202 ~~~~~~  207 (332)
T KOG1677|consen  202 PEDRAS  207 (332)
T ss_pred             cccccc
Confidence            876643

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.21  E-value=1.6e-11  Score=98.99  Aligned_cols=109  Identities=29%  Similarity=0.532  Sum_probs=83.7

Q ss_pred             cccCCCCccc--ccccccccCCCCCC---CCCCccC---CCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCC
Q psy4482          10 AILLNPRYKT--EFCRNIDELGVCRY---SLKCQFA---HHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHE   81 (133)
Q Consensus        10 ~~~~~~~~Kt--~lC~~f~~~G~C~~---G~~C~Fa---H~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~   81 (133)
                      +.++...|||  +||.-|...|.|+|   |+.|+|+   ||..++.. ..-...|+|++|..|...|+|+||.+|.|+|+
T Consensus       219 ~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg  297 (351)
T COG5063         219 QEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG  297 (351)
T ss_pred             hhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-cccccccccCCccchhhcccCccccccccccC
Confidence            5678888999  99999988999999   9999999   99888763 22345799999999999999999999999999


Q ss_pred             CCCCCCCCCC----------CCCcccccCCCcCccccCCcchhhhhhh
Q psy4482          82 EREISPPDAK----------HNPRIIYVNPEYEACCTRDTQHIRRYER  119 (133)
Q Consensus        82 ~~~~~~~~~~----------~~P~~~~~~~~~~~~cs~~~~~~~~~e~  119 (133)
                      .....-.+.-          ..+......|+.+.+|-..|..+..+-.
T Consensus       298 d~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~  345 (351)
T COG5063         298 DDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV  345 (351)
T ss_pred             ChhhccccccccccccccccccccccCccCCCCchhhccccchhhhhh
Confidence            8875544311          1233345556666777766666655443

>KOG1595|consensus

Probab=99.02  E-value=1.9e-10  Score=98.27  Aligned_cols=70  Identities=30%  Similarity=0.615  Sum_probs=61.5

Q ss_pred             ccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCC-CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy4482          11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHP-HYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD   89 (133)
Q Consensus        11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~-~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~   89 (133)
                      --+.-.|..+.|+.| ++|.|..||.|.|+|++-|..    .|| .|+|+.|+.-   |+|+. ..|.|||.+++++...
T Consensus       228 DPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgvfEcw----LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~  298 (528)
T KOG1595|consen  228 DPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGVFECW----LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLP  298 (528)
T ss_pred             CcccccccCccCccc-ccCCCCCCCccccccceehhh----cCHHHhccccccCC---CCCcc-ceEeeecChHHhcccC
Confidence            335567889999999 679999999999999999987    565 6999999966   89998 9999999999998776

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.95  E-value=1.4e-10  Score=62.20  Aligned_cols=26  Identities=46%  Similarity=0.971  Sum_probs=19.5

Q ss_pred             cccccccccccCCCCCCCCCCccCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSLKCQFAHH   42 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~   42 (133)
                      ||+++|++|+..|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            57888888877788888888888887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.81  E-value=3.4e-09  Score=85.59  Aligned_cols=74  Identities=23%  Similarity=0.462  Sum_probs=61.9

Q ss_pred             CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCcc-CCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482          13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF-THHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS   86 (133)
Q Consensus        13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~-~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~   86 (133)
                      ..+.|+|+.|..|...|.|+||.+|.|+|+..+..... .....|+...|+.+...|.|++|.+|.|.|+...+.
T Consensus       268 k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~  342 (351)
T COG5063         268 KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD  342 (351)
T ss_pred             cccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence            45679999999999899999999999999987765322 122368889999999999999999999999876544

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.67  E-value=2.6e-09  Score=57.20  Aligned_cols=27  Identities=48%  Similarity=1.186  Sum_probs=21.8

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      +++.+|++|...|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578999999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2333|consensus

Probab=98.63  E-value=9.9e-09  Score=87.54  Aligned_cols=67  Identities=21%  Similarity=0.573  Sum_probs=54.3

Q ss_pred             ccccccccccC--CCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccC--CCCCCCCC
Q psy4482          18 KTEFCRNIDEL--GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFI--HEEREISP   87 (133)
Q Consensus        18 Kt~lC~~f~~~--G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~--H~~~~~~~   87 (133)
                      +..||+.....  ..|.|||+|+|.|+++.+..   ..+......|..|...|.|+||..|||+  |-..+..+
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLa---tK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~  145 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLA---TKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGNN  145 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHh---ccCcccCCccceeeccccCCccceeehhhcccCccccc
Confidence            57899998655  47999999999999988763   4455566789999999999999999998  55554443

>KOG1040|consensus

Probab=98.52  E-value=4.5e-08  Score=80.20  Aligned_cols=57  Identities=23%  Similarity=0.625  Sum_probs=45.3

Q ss_pred             CCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482          15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        15 ~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      ...++.+|++| ..|.|..||.|.|+|.. ++.         +.+.|.+|...|.|..|..|.|.|+.
T Consensus        73 ~~~~~~vcK~~-l~glC~kgD~C~Flhe~-~~~---------k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen   73 DSRGKVVCKHW-LRGLCKKGDQCEFLHEY-DLT---------KMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             ccCCceeehhh-hhhhhhccCcCcchhhh-hhc---------ccccccccccccccccccCCcccCCC
Confidence            47889999999 46999999999999987 443         33567777777777777777777777

>smart00356 ZnF_C3H1 zinc finger

Probab=98.50  E-value=8.3e-08  Score=50.55  Aligned_cols=25  Identities=48%  Similarity=1.072  Sum_probs=19.6

Q ss_pred             cccccccccccCCCCCCCCCCccCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSLKCQFAHH   42 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~   42 (133)
                      +|+.+|++| ..|.|.+|++|+|+|+
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            567788888 6788888888888886

>KOG1677|consensus

Probab=98.31  E-value=5.6e-07  Score=72.99  Aligned_cols=68  Identities=32%  Similarity=0.727  Sum_probs=58.0

Q ss_pred             ccccccccCCCCCCCCCCccCCCCCCCCCccC-------CCCCccccccccccccccCCC-CCCCccCCCCCCCCC
Q psy4482          20 EFCRNIDELGVCRYSLKCQFAHHPGELLPKFT-------HHPHYRTQLCRAYHKAGYCSF-GARCIFIHEEREISP   87 (133)
Q Consensus        20 ~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~-------~~~~~kt~~C~~f~~~G~C~~-G~~C~F~H~~~~~~~   87 (133)
                      ..|.++...+.|.++..|.|.|...+++....       ....++|.+|..|...|.|+| |+.|+|+|+.++++.
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~  162 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRL  162 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccc
Confidence            78999988899999999999999755543321       224689999999999999999 999999999999984

>smart00356 ZnF_C3H1 zinc finger

Probab=98.19  E-value=1.1e-06  Score=46.16  Aligned_cols=26  Identities=50%  Similarity=1.267  Sum_probs=22.8

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      +++.+|++| ..|.|.+|++|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467899999 67999999999999974

>KOG2494|consensus

Probab=98.08  E-value=1.6e-06  Score=70.78  Aligned_cols=69  Identities=26%  Similarity=0.556  Sum_probs=51.9

Q ss_pred             cCCCCccc-ccccccccCCCCCCCCC-CccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy4482          12 LLNPRYKT-EFCRNIDELGVCRYSLK-CQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP   88 (133)
Q Consensus        12 ~~~~~~Kt-~lC~~f~~~G~C~~G~~-C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~   88 (133)
                      |...++-+ ++|+.|+ .|.|.+||+ |+|+|......     ..+-+-..|.+|.+ |.|.. ++|+|+|....++..
T Consensus        29 ~kd~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~-----V~~g~v~aC~Ds~k-grCsR-~nCkylHpp~hlkdq   99 (331)
T KOG2494|consen   29 VKDTKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQ-----VSNGRVIACFDSQK-GRCSR-ENCKYLHPPQHLKDQ   99 (331)
T ss_pred             ccccchhHHHHHHHHH-hccccCCCccccccCCCCCCC-----ccCCeEEEEecccc-CccCc-ccceecCCChhhhhh
Confidence            44555544 8999995 689999999 99999876443     12223457999985 99985 679999999877654

>KOG1595|consensus

Probab=97.95  E-value=7.7e-06  Score=70.41  Aligned_cols=72  Identities=24%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             CcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCCCCCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKH   92 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~~~~   92 (133)
                      .||++.|..    +.|.-+-.|-|+|.-+..+....+.-.|..++|+.|.+ |.|..|+.|.|+|+.-+..--|...
T Consensus       198 ~fKir~C~R----~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~Y  269 (528)
T KOG1595|consen  198 SFKIRRCSR----PRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFECWLHPARY  269 (528)
T ss_pred             eeeecccCC----ccCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccceehhhcCHHHh
Confidence            488999974    36888999999995555553333344578899999985 9999999999999999877665443

>KOG1763|consensus

Probab=97.90  E-value=2.6e-06  Score=68.86  Aligned_cols=75  Identities=25%  Similarity=0.458  Sum_probs=53.2

Q ss_pred             CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccC-------C------------------CCCccc-cccccccc
Q psy4482          13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT-------H------------------HPHYRT-QLCRAYHK   66 (133)
Q Consensus        13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~-------~------------------~~~~kt-~~C~~f~~   66 (133)
                      .-..-|+.+|-+| ..|.|..|+.|.|+|+....+....       +                  .+...| .+|++|..
T Consensus        86 ~gvDPKSvvCafF-k~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe  164 (343)
T KOG1763|consen   86 KGVDPKSVVCAFF-KQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE  164 (343)
T ss_pred             cCCCchHHHHHHH-hccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence            3456799999999 7899999999999999865543210       0                  011111 47998863


Q ss_pred             ------ccc---CCCCC-CCccCCCCCCCCCC
Q psy4482          67 ------AGY---CSFGA-RCIFIHEEREISPP   88 (133)
Q Consensus        67 ------~G~---C~~G~-~C~F~H~~~~~~~~   88 (133)
                            +|+   |++|. .|.|.|...+.-..
T Consensus       165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVL  196 (343)
T KOG1763|consen  165 AVENGKYGWFWECPNGGDKCIYRHALPEGYVL  196 (343)
T ss_pred             HHhcCCccceeECCCCCCeeeeeecCCcchhh
Confidence                  443   99996 89999998775544

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.49  E-value=0.00029  Score=57.00  Aligned_cols=58  Identities=24%  Similarity=0.563  Sum_probs=43.4

Q ss_pred             CcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      .+...+|++| ..|.|+-|+.|.|+|+.+-...        -+..|++|...|.|..|..|.+.|..
T Consensus       101 ~~s~V~c~~~-~~g~c~s~~~c~~lh~~d~~~s--------~~~~c~~Fs~~G~cs~g~~c~~~h~d  158 (285)
T COG5084         101 LSSSVVCKFF-LRGLCKSGFSCEFLHEYDLRSS--------QGPPCRSFSLKGSCSSGPSCGYSHID  158 (285)
T ss_pred             ccCCcccchh-ccccCcCCCccccccCCCcccc--------cCCCcccccccceeccCCCCCccccC
Confidence            5788999999 5799999999999999875541        13456666566666666666666665

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.40  E-value=2.9e-05  Score=61.29  Aligned_cols=75  Identities=24%  Similarity=0.404  Sum_probs=53.0

Q ss_pred             CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccC------------CCC----Cc--cccccccccc------cc
Q psy4482          13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT------------HHP----HY--RTQLCRAYHK------AG   68 (133)
Q Consensus        13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~------------~~~----~~--kt~~C~~f~~------~G   68 (133)
                      .-..-|+.+|-.| ..+.|..|+.|.|+|+.++.+....            ..+    .+  -..+|++|..      +|
T Consensus        79 agvdpK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYg  157 (299)
T COG5252          79 AGVDPKTVVCALF-LNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYG  157 (299)
T ss_pred             cccCchhHHHHHh-ccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcc
Confidence            3456799999999 6799999999999999777653210            011    11  1257997762      33


Q ss_pred             ---cCCCC-CCCccCCCCCCCCCC
Q psy4482          69 ---YCSFG-ARCIFIHEEREISPP   88 (133)
Q Consensus        69 ---~C~~G-~~C~F~H~~~~~~~~   88 (133)
                         .|++| .+|.|.|...+.-..
T Consensus       158 w~W~CPng~~~C~y~H~Lp~GyVL  181 (299)
T COG5252         158 WGWTCPNGNMRCSYIHKLPDGYVL  181 (299)
T ss_pred             ceeeCCCCCceeeeeeccCcccee
Confidence               49999 699999998874433

>KOG1492|consensus

Probab=97.16  E-value=0.00025  Score=56.11  Aligned_cols=27  Identities=30%  Similarity=0.828  Sum_probs=22.3

Q ss_pred             ccccccccccCCCCCCCCCCccCCCCC
Q psy4482          18 KTEFCRNIDELGVCRYSLKCQFAHHPG   44 (133)
Q Consensus        18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~   44 (133)
                      ...-|++|..+|.|-.|..|+|.|.+.
T Consensus       205 savycryynangicgkgaacrfvhept  231 (377)
T KOG1492|consen  205 SAVYCRYYNANGICGKGAACRFVHEPT  231 (377)
T ss_pred             ceeEEEEecCCCcccCCceeeeecccc
Confidence            346799998889999999999999764

>KOG1040|consensus

Probab=97.11  E-value=0.00063  Score=56.00  Aligned_cols=70  Identities=27%  Similarity=0.576  Sum_probs=41.6

Q ss_pred             cccccccccccCCCCCCCCCCccCCCCCCCCCcc--------------CCCCCccccccccccccccCCCCCC-CccCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF--------------THHPHYRTQLCRAYHKAGYCSFGAR-CIFIHE   81 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~--------------~~~~~~kt~~C~~f~~~G~C~~G~~-C~F~H~   81 (133)
                      .|...|.+|...|.|..|..|.|.|+..+.....              ......+..+|..|.. |.|+-|.. |.+.|.
T Consensus       103 ~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~-gfC~~g~q~c~~~hp  181 (325)
T KOG1040|consen  103 TKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYNA-GFCPKGPQRCDMLHP  181 (325)
T ss_pred             cccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCchhh-hhccCCCCcccccCC
Confidence            3455799998889999999999999984322100              0001122245555543 55655555 665555


Q ss_pred             CCCCCC
Q psy4482          82 EREISP   87 (133)
Q Consensus        82 ~~~~~~   87 (133)
                      ...+..
T Consensus       182 ~~~~~~  187 (325)
T KOG1040|consen  182 EFQQPP  187 (325)
T ss_pred             CCCCCh
Confidence            555444

>KOG2185|consensus

Probab=96.78  E-value=0.00052  Score=57.87  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=23.9

Q ss_pred             CcccccccccccCCCCCCCCCCccCCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSLKCQFAHHPG   44 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~   44 (133)
                      ....++|+|| ..|.|+||++|+|+||..
T Consensus       137 h~sMkpC~ff-Leg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  137 HESMKPCKFF-LEGRCRFGENCRFSHGLD  164 (486)
T ss_pred             chhhccchHh-hccccccCcccccccCcc
Confidence            3455899999 579999999999999874

>KOG1492|consensus

Probab=96.56  E-value=0.0013  Score=52.04  Aligned_cols=76  Identities=21%  Similarity=0.453  Sum_probs=50.6

Q ss_pred             ccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCcc--------CCCC-------C--ccccccccccccccCCCC
Q psy4482          11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF--------THHP-------H--YRTQLCRAYHKAGYCSFG   73 (133)
Q Consensus        11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~--------~~~~-------~--~kt~~C~~f~~~G~C~~G   73 (133)
                      .|...-.| .+|+.| .+|+|...+.|..+|..+.-+-+.        ...|       .  ....+|..|.+.|.|-.|
T Consensus       226 fvheptrk-ticpkf-lngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelg  303 (377)
T KOG1492|consen  226 FVHEPTRK-TICPKF-LNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELG  303 (377)
T ss_pred             eecccccc-ccChHH-hcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceeccc
Confidence            44444444 479999 579999999999999877654221        0111       1  123578888888888888


Q ss_pred             CCCccCCCCCCCCCC
Q psy4482          74 ARCIFIHEEREISPP   88 (133)
Q Consensus        74 ~~C~F~H~~~~~~~~   88 (133)
                      ..|.--|-..-....
T Consensus       304 tscknqhilqctdya  318 (377)
T KOG1492|consen  304 TSCKNQHILQCTDYA  318 (377)
T ss_pred             cccccceeeeecchh
Confidence            888877766544433

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.53  E-value=0.0016  Score=31.88  Aligned_cols=19  Identities=26%  Similarity=0.595  Sum_probs=13.7

Q ss_pred             cccccccCCCCCCCCCCccCCC
Q psy4482          21 FCRNIDELGVCRYSLKCQFAHH   42 (133)
Q Consensus        21 lC~~f~~~G~C~~G~~C~FaH~   42 (133)
                      +|++|.  + |++|++|.|+|.
T Consensus         1 ~Ck~~~--~-C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP--N-CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC--C-CCCCCcCccCCc
Confidence            477662  2 888888888884

>KOG2185|consensus

Probab=96.53  E-value=0.00096  Score=56.31  Aligned_cols=26  Identities=31%  Similarity=0.746  Sum_probs=22.5

Q ss_pred             ccccccccccccCCCCCCCccCCCCCC
Q psy4482          58 TQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        58 t~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      ..+|++|. .|.|+||.+|||+|+...
T Consensus       140 MkpC~ffL-eg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  140 MKPCKFFL-EGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             hccchHhh-ccccccCcccccccCccc
Confidence            46899887 599999999999999764

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.47  E-value=0.00094  Score=51.75  Aligned_cols=31  Identities=26%  Similarity=0.738  Sum_probs=26.6

Q ss_pred             cccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELL   47 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~   47 (133)
                      +...+|+.|..+|.|-|||.|.|.|+.++..
T Consensus       139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             cCcccccchhhcccccCCchhhhhhhhhhhh
Confidence            5567899998889999999999999988654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.34  E-value=0.0011  Score=51.44  Aligned_cols=29  Identities=31%  Similarity=1.106  Sum_probs=25.6

Q ss_pred             ccccccccccccCCCCCCCccCCCCCCCC
Q psy4482          58 TQLCRAYHKAGYCSFGARCIFIHEEREIS   86 (133)
Q Consensus        58 t~~C~~f~~~G~C~~G~~C~F~H~~~~~~   86 (133)
                      ..+|+.|..+|+|-||+.|.|.|..++..
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhhh
Confidence            36799999999999999999999988443

>KOG4791|consensus

Probab=95.88  E-value=0.0037  Score=53.92  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             ccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482          20 EFCRNIDELGVCRYSLKCQFAHHPGELL   47 (133)
Q Consensus        20 ~lC~~f~~~G~C~~G~~C~FaH~~~e~~   47 (133)
                      ..|.+| ....|++++.|.|.|...-+.
T Consensus         4 ~dcyff-~ys~cKk~d~c~~rh~E~al~   30 (667)
T KOG4791|consen    4 EDCYFF-FYSTCKKGDSCPFRHCEAALG   30 (667)
T ss_pred             ccchhh-hhhhhhccCcCcchhhHHHhc
Confidence            357777 467899999999999876654

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.86  E-value=0.0064  Score=29.73  Aligned_cols=19  Identities=32%  Similarity=0.688  Sum_probs=15.4

Q ss_pred             ccccccccccCCCCCCCccCCC
Q psy4482          60 LCRAYHKAGYCSFGARCIFIHE   81 (133)
Q Consensus        60 ~C~~f~~~G~C~~G~~C~F~H~   81 (133)
                      +|++|.   .|++|+.|.|+|.
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            488554   4999999999995

>KOG2494|consensus

Probab=95.63  E-value=0.0047  Score=50.73  Aligned_cols=47  Identities=30%  Similarity=0.663  Sum_probs=35.7

Q ss_pred             cccccccccccCCCCCC-CccCCCCCCCCCCCCCCCCcccccCCCcCccccCC
Q psy4482          59 QLCRAYHKAGYCSFGAR-CIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRD  110 (133)
Q Consensus        59 ~~C~~f~~~G~C~~G~~-C~F~H~~~~~~~~~~~~~P~~~~~~~~~~~~cs~~  110 (133)
                      .+|+.|+. |.|..|++ |+|+|......    ++.-..+.+..+.+.-|+++
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g~v~aC~Ds~kgrCsR~   85 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNGRVIACFDSQKGRCSRE   85 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCC----ccCCeEEEEeccccCccCcc
Confidence            68999985 99999999 99999988433    33344556666667778776

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=95.39  E-value=0.02  Score=46.46  Aligned_cols=57  Identities=26%  Similarity=0.658  Sum_probs=46.0

Q ss_pred             cccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccc--cccCCCCCCCccCCCCCCC
Q psy4482          19 TEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHK--AGYCSFGARCIFIHEEREI   85 (133)
Q Consensus        19 t~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~--~G~C~~G~~C~F~H~~~~~   85 (133)
                      ...|++|-..|.|..|..|.+.|....-.          ...|..|..  .+.|++|..|+|.|.....
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~----------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~  192 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSF----------AGNCDQYSGATYGFCPLGASCKFSHTLKRV  192 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCcccc----------cccccccCcccccccCCCCccccccccccc
Confidence            56799997789999999999999863222          256776653  6899999999999999955

>KOG1813|consensus

Probab=94.55  E-value=0.011  Score=48.12  Aligned_cols=32  Identities=28%  Similarity=0.801  Sum_probs=27.7

Q ss_pred             CcccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELL   47 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~   47 (133)
                      .|...+|+.|-.+|.|-||+.|.|.|+...+.
T Consensus       183 d~qpDicKdykeTgycg~gdSckFlh~r~DyK  214 (313)
T KOG1813|consen  183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDYK  214 (313)
T ss_pred             ecCchhhhhhHhhCcccccchhhhhhhhhhcc
Confidence            35567999998899999999999999988763

>KOG1813|consensus

Probab=93.41  E-value=0.024  Score=46.22  Aligned_cols=29  Identities=31%  Similarity=1.114  Sum_probs=25.9

Q ss_pred             cccccccccccccCCCCCCCccCCCCCCC
Q psy4482          57 RTQLCRAYHKAGYCSFGARCIFIHEEREI   85 (133)
Q Consensus        57 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~   85 (133)
                      -..+|+.|..+|+|-||+.|.|.|...+.
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            34689999999999999999999998855

>KOG2202|consensus

Probab=93.29  E-value=0.031  Score=44.59  Aligned_cols=27  Identities=33%  Similarity=0.891  Sum_probs=22.4

Q ss_pred             ccccccccccccccCCCCCCCccCCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEER   83 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~   83 (133)
                      ++...|..|.. +.|.+|..|-|.|...
T Consensus       150 ~rea~C~~~e~-~~C~rG~~CnFmH~k~  176 (260)
T KOG2202|consen  150 FREAICGQFER-TECSRGGACNFMHVKR  176 (260)
T ss_pred             hhhhhhccccc-ccCCCCCcCcchhhhh
Confidence            34567998875 6999999999999874

>KOG1039|consensus

Probab=91.72  E-value=0.065  Score=44.59  Aligned_cols=25  Identities=32%  Similarity=0.877  Sum_probs=21.0

Q ss_pred             cccccccccccCCCCCCCccCCCCCC
Q psy4482          59 QLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        59 ~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      .+|++|. .|+|.||..|||.|+...
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCch
Confidence            6899776 599999999999998884

>KOG1039|consensus

Probab=90.76  E-value=0.095  Score=43.63  Aligned_cols=24  Identities=21%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             ccccccccCCCCCCCCCCccCCCCC
Q psy4482          20 EFCRNIDELGVCRYSLKCQFAHHPG   44 (133)
Q Consensus        20 ~lC~~f~~~G~C~~G~~C~FaH~~~   44 (133)
                      .+|++|+ .|.|.||+.|+|.|...
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            7899995 69999999999999887

>KOG1763|consensus

Probab=90.42  E-value=0.055  Score=44.20  Aligned_cols=34  Identities=21%  Similarity=0.549  Sum_probs=28.1

Q ss_pred             CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy4482          55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD   89 (133)
Q Consensus        55 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~   89 (133)
                      -.++.+|-+|. .|.|.-|..|.|+|+....+...
T Consensus        89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~e  122 (343)
T KOG1763|consen   89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKE  122 (343)
T ss_pred             CchHHHHHHHh-ccCCCCCCcccccchHHHhhhcc
Confidence            35788999887 59999999999999998766543

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=88.41  E-value=0.3  Score=25.04  Aligned_cols=20  Identities=35%  Similarity=0.775  Sum_probs=10.1

Q ss_pred             cccccccCCCCCCCCCCccCC
Q psy4482          21 FCRNIDELGVCRYSLKCQFAH   41 (133)
Q Consensus        21 lC~~f~~~G~C~~G~~C~FaH   41 (133)
                      +|.+-..+|.|. -+.|.|.|
T Consensus         2 lC~yEl~Gg~Cn-d~~C~~QH   21 (23)
T PF10650_consen    2 LCPYELTGGVCN-DPDCEFQH   21 (23)
T ss_pred             CCccccCCCeeC-CCCCCccc
Confidence            455554444554 34555555

>KOG4791|consensus

Probab=85.05  E-value=0.5  Score=41.20  Aligned_cols=55  Identities=20%  Similarity=0.429  Sum_probs=39.0

Q ss_pred             cccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCcccccccccccccc-CCCCCCCccCCCCCCC
Q psy4482          19 TEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGY-CSFGARCIFIHEEREI   85 (133)
Q Consensus        19 t~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~-C~~G~~C~F~H~~~~~   85 (133)
                      ...|.+|+..-.|+.  -|.|-|+.-....        ...+|. |+..+. |. .++|-|.|....+
T Consensus        32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------~e~~CY-we~~p~gC~-k~~CgfRH~~pPL   87 (667)
T KOG4791|consen   32 ETVCTLWQEGRCCRK--VCRYRHSEIDKKR--------SEIPCY-WENQPTGCQ-KLNCGFRHNRPPL   87 (667)
T ss_pred             cchhhhhhhcCcccc--cccchhhHHhhhc--------Ccccce-eecCCCccC-CCccccccCCCch
Confidence            357999977656765  8999998755441        236898 554565 96 6999999965433

>KOG2202|consensus

Probab=81.20  E-value=0.8  Score=36.69  Aligned_cols=32  Identities=16%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             ccCCCCcccccccccccCCCCCCCCCCccCCCC
Q psy4482          11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHP   43 (133)
Q Consensus        11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~   43 (133)
                      +++-..++..+|..|. .+.|.+|..|.|.|-.
T Consensus       144 ~~pvT~~rea~C~~~e-~~~C~rG~~CnFmH~k  175 (260)
T KOG2202|consen  144 LSPVTDFREAICGQFE-RTECSRGGACNFMHVK  175 (260)
T ss_pred             ecCcCchhhhhhcccc-cccCCCCCcCcchhhh
Confidence            4555678888999995 5689999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		1e-14
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		2e-13

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFG 73
          + RYKTE CR  +E G C+Y  KCQFAH   EL    T HP Y+T+LCR +H  G+C +G
Sbjct: 1  STRYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYG 59
Query: 74 ARCIFIHEERE 84
           RC FIH   E
Sbjct: 60 PRCHFIHNADE 70

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYC 70
          +  + RYKTE CR   E G CRY  KCQFAH  GE L +   HP Y+T+LC  +   G C
Sbjct: 4  MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGE-LRQANRHPKYKTELCHKFKLQGRC 62
Query: 71 SFGARCIFIHEERE 84
           +G+RC FIH   E
Sbjct: 63 PYGSRCHFIHNPTE 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-18
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-05
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 72.3 bits (177), Expect = 4e-18
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFG 73
          + RYKTE CR   E G CRY  KCQFAH     L +   HP Y+T+LC  +   G C +G
Sbjct: 7  SSRYKTELCRTYSESGRCRYGAKCQFAH-GLGELRQANRHPKYKTELCHKFKLQGRCPYG 65

Query: 74 ARCIFIHEERE 84
          +RC FIH   E
Sbjct: 66 SRCHFIHNPTE 76

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.0 bits (88), Expect = 6e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 48 PKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPR 95
             T    Y+T+LCR Y ++G C +GA+C F H   E+   +     +
Sbjct: 2  SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYK 49

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 21/110 (19%)

Query: 14  NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFG 73
               K E C+     G C  +  C + H                   C+ YH  G C  G
Sbjct: 8   ELPKKRELCKFYIT-GFCARAENCPYMHGDFP---------------CKLYHTTGNCING 51

Query: 74  ARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNAT 123
             C+F H+     P   +    +  +  +       D + +   ++   +
Sbjct: 52  DDCMFSHD-----PLTEETRELLDKMLADDAEAGAEDEKEVEELKKSGPS 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.85
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.52
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.46
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.36
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.29
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.14
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.94
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.86
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.74
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.44
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.37
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.79
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.67
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.49
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.44
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.43
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.88
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	96.8
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.61
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	96.48
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.47
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	95.93
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	93.48
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	93.81
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.33

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.85  E-value=2e-22  Score=131.45  Aligned_cols=75  Identities=48%  Similarity=0.986  Sum_probs=35.9

Q ss_pred             ccccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482           9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus         9 ~~~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      +..+++.+|||+||++|+..|.|++|++|+|+|+.++++. ...++.+++.+|+.|...|.|++|++|+|+|+..+
T Consensus         2 ~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~-~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            2 SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ-ANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             --CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG-TC---------------------------------
T ss_pred             CCCCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc-ccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3467889999999999987899999999999999999884 23456789999999988999999999999999765

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.52  E-value=6.8e-15  Score=100.47  Aligned_cols=53  Identities=30%  Similarity=0.695  Sum_probs=47.7

Q ss_pred             CCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCC
Q psy4482          15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEER   83 (133)
Q Consensus        15 ~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~   83 (133)
                      ..+|+.+|++| ..|.|.+|++|.|+|+               +.+|++|...|.|++|++|+|+|...
T Consensus         9 ~~~k~~lC~~f-~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            9 LPKKRELCKFY-ITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CSCCCSBCTTT-TTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCCCccCccc-ccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            45899999999 5899999999999998               36899997789999999999999865

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3.8e-14  Score=92.64  Aligned_cols=61  Identities=30%  Similarity=0.549  Sum_probs=51.1

Q ss_pred             CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482          14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS   86 (133)
Q Consensus        14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~   86 (133)
                      ...+|+++|++|+ .|.|.+|++|.|+|+....+          +.+|++|...|.|. |++|+|.|......
T Consensus         5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~~----------~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTK----------MPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTTT----------SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CCCCcceeCHhHc-cCcCCCCCCCCCccccccCc----------CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            4558899999996 59999999999999976532          46899888769999 99999999986543

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.36  E-value=1.7e-13  Score=88.64  Aligned_cols=61  Identities=30%  Similarity=0.541  Sum_probs=49.8

Q ss_pred             CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482          14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS   86 (133)
Q Consensus        14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~   86 (133)
                      ....++++|++|+ .|.|.+|++|.|+|+....          ++.+|++|...|.|.+ ++|+|.|.....+
T Consensus        11 ~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k   71 (72)
T 2rhk_C           11 MSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT----------KMSECYFYSKFGECSN-KECPFLHIDPESK   71 (72)
T ss_dssp             SSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT----------SCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred             CCCCcCeeCHHHh-cCCCCCCCCCCCccccccc----------cCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence            3457889999996 5999999999999997543          3578998886699999 9999999876543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.29  E-value=1.5e-12  Score=83.55  Aligned_cols=63  Identities=27%  Similarity=0.614  Sum_probs=51.1

Q ss_pred             cccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI   85 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~   85 (133)
                      .|..+|++| ..|.|..|+ .|.|+|+.++...   .....++.+|.+|.. |.|.+| .|+|.|....+
T Consensus         4 ~k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~---~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A            4 DRLEVCREY-QRGNCNRGENDCRFAHPADSTMI---DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             CEEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC---BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             ccchhCHHH-hcCCCCCCCCCCCCccCcccccc---cccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            366899999 579999999 5999999877542   223457789999885 999999 99999987654

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=5.4e-12  Score=86.05  Aligned_cols=65  Identities=26%  Similarity=0.580  Sum_probs=51.9

Q ss_pred             CCcccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482          15 PRYKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI   85 (133)
Q Consensus        15 ~~~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~   85 (133)
                      ...|.++|++|+ .|.|.+|+ .|.|+|+.+++..   .....+..+|.+|.. |.|.+| .|+|.|....+
T Consensus        16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~---~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMI---DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSC---CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhccc---cccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence            446778999996 49999999 8999999877642   223456789998875 999999 99999987543

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.94  E-value=4.3e-10  Score=74.48  Aligned_cols=62  Identities=27%  Similarity=0.544  Sum_probs=49.1

Q ss_pred             CcccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI   85 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~   85 (133)
                      ..+..+|+.|+. |.|..|| .|+|+|....+..     ...+..+|.+|.. |.|..+ .|+|.|....+
T Consensus         6 ~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~-----~~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A            6 WLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV-----ENGRVIACFDSLK-GRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             GGEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE-----ETTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred             cccchhcHHHhc-CCCCCCCCCCCCcCCCccccc-----cCCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence            356789999965 9999997 9999999875431     1234578998875 999998 99999987643

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=5.8e-11  Score=75.94  Aligned_cols=49  Identities=24%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCcccccccc
Q psy4482          14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRA   63 (133)
Q Consensus        14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~   63 (133)
                      ....|++||++| ..|.|+||++|.|||+.+||+.-..+....++++++.
T Consensus        15 ~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A   63 (69)
T 2d9m_A           15 FPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA   63 (69)
T ss_dssp             CCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred             CCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence            344577999999 6789999999999999999984222222344555553

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.74  E-value=3.9e-09  Score=70.72  Aligned_cols=60  Identities=30%  Similarity=0.588  Sum_probs=47.6

Q ss_pred             cccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      .+..+|+.|+. |.|..|+ .|+|+|......-     ..-+..+|.+|. .|.|..+ .|+|.|....
T Consensus        15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-----~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-----ENGRVIACFDSL-KGRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-----BTTBEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred             chhhhchHHhc-CCCCCCCCCCCCcCCCccccc-----cCCceeeehhhh-hCcCCCC-CcceecCHHH
Confidence            45679999965 9999998 9999999876431     122467899997 5999987 9999998753

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.44  E-value=9.8e-08  Score=61.29  Aligned_cols=37  Identities=38%  Similarity=0.921  Sum_probs=32.5

Q ss_pred             CCCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy4482          52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP   88 (133)
Q Consensus        52 ~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~   88 (133)
                      ..+.++|.+|++|...|.|++|++|+|+|+..+++..
T Consensus         6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~   42 (77)
T 1m9o_A            6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   42 (77)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence            3467899999999878999999999999999988754

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=2e-08  Score=64.14  Aligned_cols=33  Identities=30%  Similarity=0.653  Sum_probs=28.6

Q ss_pred             CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy4482          54 PHYRTQLCRAYHKAGYCSFGARCIFIHEEREISP   87 (133)
Q Consensus        54 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~   87 (133)
                      |..++.+|..| ..|.|+||++|.|||+.++++.
T Consensus        16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           16 PTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CCCCcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence            44567999999 5799999999999999998875

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.79  E-value=1.5e-05  Score=53.90  Aligned_cols=25  Identities=28%  Similarity=0.903  Sum_probs=22.8

Q ss_pred             ccccccccccccccCCCCCCCccCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHE   81 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~   81 (133)
                      +++.+|++|. .|.|.+|+.|+|+|+
T Consensus        11 ~k~~lC~~f~-~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYI-TGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             CCCccCcccc-cCcCCCCCCCCCCCC
Confidence            4789999885 799999999999999

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=2.3e-05  Score=50.49  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             ccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccc
Q psy4482          18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHK   66 (133)
Q Consensus        18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~   66 (133)
                      ++.+|++|+..|.|. |++|.|+|...+.          ++.+|..|..
T Consensus        37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~~----------~~~~C~~f~~   74 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-NKECPFLHIDPES----------KIKDCPWSGP   74 (77)
T ss_dssp             TSCBCHHHHHTCCCC-CSSCSSBCCCTTS----------SCSSSSCCTT
T ss_pred             cCCCCcccCCCCccC-CCCeeccCCCccc----------cCCCCccccc
Confidence            567899997669999 9999999987544          3578998874

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.49  E-value=2e-05  Score=46.93  Aligned_cols=29  Identities=24%  Similarity=0.668  Sum_probs=24.5

Q ss_pred             ccccccccccccccCCCCCCCccCCCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      ..+.+|..|...|+|++|..|.|.|+..-
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            46788999999999999999999998753

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.44  E-value=3.4e-05  Score=45.90  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             CcccccccccccCCCCCCCCCCccCCCCC
Q psy4482          16 RYKTEFCRNIDELGVCRYSLKCQFAHHPG   44 (133)
Q Consensus        16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~   44 (133)
                      ..++.+|..|...|.|++|.+|.|.|+++
T Consensus        17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccccchhhhccccccCCCCCCCCccccCC
Confidence            36899999998889999999999999976

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.43  E-value=3.5e-05  Score=49.21  Aligned_cols=28  Identities=32%  Similarity=0.797  Sum_probs=24.3

Q ss_pred             ccccccccccccccCCCCCCCccCCCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      .++.+|++|.. |.|.+|+.|.|+|+...
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence            46789998876 99999999999999754

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.88  E-value=0.00045  Score=53.10  Aligned_cols=65  Identities=18%  Similarity=0.401  Sum_probs=41.0

Q ss_pred             ccccccccccCCCCC----CCCCCccCCCCCCCCCcc--------------------CCCCCccccccccccc---cccC
Q psy4482          18 KTEFCRNIDELGVCR----YSLKCQFAHHPGELLPKF--------------------THHPHYRTQLCRAYHK---AGYC   70 (133)
Q Consensus        18 Kt~lC~~f~~~G~C~----~G~~C~FaH~~~e~~~~~--------------------~~~~~~kt~~C~~f~~---~G~C   70 (133)
                      .--||++|+ -|.|.    .+..|+|+|++....+..                    ...|..-..+|.+|..   .|.|
T Consensus        88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~~g~C  166 (229)
T 3u9g_A           88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGRKQTC  166 (229)
T ss_dssp             SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSSCCSC
T ss_pred             ceeechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHhCCCCCCCcC
Confidence            345899995 58994    346799999986532210                    1223334567888832   3578


Q ss_pred             CCCCCCccCCCCC
Q psy4482          71 SFGARCIFIHEER   83 (133)
Q Consensus        71 ~~G~~C~F~H~~~   83 (133)
                      .+++.|...|.=.
T Consensus       167 ~~~~~C~kLHIC~  179 (229)
T 3u9g_A          167 GQPQPCERLHICE  179 (229)
T ss_dssp             SSSSCCCSBCSCH
T ss_pred             CCCCCCcceeccc
Confidence            8888887776543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=96.80  E-value=0.00021  Score=45.18  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=27.0

Q ss_pred             CCCcccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482          14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELL   47 (133)
Q Consensus        14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~   47 (133)
                      ....++.+|.+|+ .|.|.+| +|.|+|....|+
T Consensus        37 ~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A           37 TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred             ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence            4567899999995 5999999 999999987654

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.61  E-value=0.0005  Score=46.31  Aligned_cols=31  Identities=26%  Similarity=0.716  Sum_probs=26.3

Q ss_pred             CccccccccccccccCCCCC-CCccCCCCCCCC
Q psy4482          55 HYRTQLCRAYHKAGYCSFGA-RCIFIHEEREIS   86 (133)
Q Consensus        55 ~~kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~~   86 (133)
                      ..+..+|++|.. |.|..|+ .|+|+|......
T Consensus        17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~   48 (98)
T 2e5s_A           17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTM   48 (98)
T ss_dssp             SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCS
T ss_pred             hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcc
Confidence            456789998885 9999999 799999998754

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=96.48  E-value=0.0014  Score=42.85  Aligned_cols=28  Identities=29%  Similarity=0.762  Sum_probs=24.2

Q ss_pred             cccccccccccccCCCCC-CCccCCCCCCC
Q psy4482          57 RTQLCRAYHKAGYCSFGA-RCIFIHEEREI   85 (133)
Q Consensus        57 kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~   85 (133)
                      +..+|++|.. |.|..|+ .|+|+|....+
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~   36 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSC   36 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTC
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCccc
Confidence            4578999986 9999997 99999998754

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.47  E-value=0.0017  Score=49.86  Aligned_cols=52  Identities=23%  Similarity=0.630  Sum_probs=41.8

Q ss_pred             cCCCCcccccccccccC----CCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482          12 LLNPRYKTEFCRNIDEL----GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        12 ~~~~~~Kt~lC~~f~~~----G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      ++.+..=.++|.+| +.    |.|.+++.|...|                  +|++|. .|.|+| ..|.-+|+..+
T Consensus       144 QnDp~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------IC~~Fl-~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          144 QSDPFFLPEICKSY-KGEGRKQTCGQPQPCERLH------------------ICEHFT-RGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             TTCGGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC------------------SCHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred             cCCCccCchHHHHh-CCCCCCCcCCCCCCCccee------------------ccchhh-cCCcCC-CCccCccCccC
Confidence            34445557899999 63    6899999999776                  699887 599999 89999999765

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=95.93  E-value=0.0031  Score=41.76  Aligned_cols=28  Identities=29%  Similarity=0.775  Sum_probs=24.3

Q ss_pred             cccccccccccccCCCCC-CCccCCCCCCC
Q psy4482          57 RTQLCRAYHKAGYCSFGA-RCIFIHEEREI   85 (133)
Q Consensus        57 kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~   85 (133)
                      +..+|+.|.. |.|..|+ .|+|+|.....
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~   44 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC   44 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence            3478999986 9999998 99999998864

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=93.48  E-value=0.0068  Score=39.43  Aligned_cols=21  Identities=24%  Similarity=0.581  Sum_probs=16.3

Q ss_pred             cccccccccCCCCCCCCCCccCCCC
Q psy4482          19 TEFCRNIDELGVCRYSLKCQFAHHP   43 (133)
Q Consensus        19 t~lC~~f~~~G~C~~G~~C~FaH~~   43 (133)
                      .++|+||.   .|.. +.|.|.|..
T Consensus         9 ~e~CKf~~---~Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            9 LEQCKFGT---HCTN-KRCKYRHAR   29 (80)
Confidence            46798884   3887 899999964

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=93.81  E-value=0.016  Score=44.67  Aligned_cols=26  Identities=31%  Similarity=0.680  Sum_probs=22.0

Q ss_pred             cccccccccCCCCCCCCCCccCCCCCC
Q psy4482          19 TEFCRNIDELGVCRYSLKCQFAHHPGE   45 (133)
Q Consensus        19 t~lC~~f~~~G~C~~G~~C~FaH~~~e   45 (133)
                      ..+|.||. .|.|.+|+.|.|.|....
T Consensus        70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFA-KGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred             CeEcCccc-cCCCCCCCCCCccCCCCC
Confidence            35999995 599999999999997643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.33  E-value=0.055  Score=41.56  Aligned_cols=25  Identities=28%  Similarity=0.875  Sum_probs=21.3

Q ss_pred             cccccccccccCCCCCCCccCCCCCC
Q psy4482          59 QLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        59 ~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      .+|.+|.. |.|..|..|.|.|....
T Consensus        71 ~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             eEcCcccc-CCCCCCCCCCccCCCCC
Confidence            48998875 99999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-09
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-07
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	2e-08
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	6e-08
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	7e-08
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-07

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 51 THHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
          T HP Y+T+LCR +H  G+C +G RC FIH   E
Sbjct: 1  TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 3e-07
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
          +P+YKTE CR    +G C Y  +C F H+  E
Sbjct: 3  HPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (108), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 51 THHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD 89
          T    Y+T+LCR Y ++G C +GA+C F H   E+   +
Sbjct: 2  TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN 40

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (104), Expect = 6e-08
 Identities = 21/33 (63%), Positives = 22/33 (66%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
          + RYKTE CR   E G CRY  KCQFAH  GEL
Sbjct: 4  SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL 36

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 7e-08
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP 48
          + RYKTE CR  +E G C+Y  KCQFAH   EL  
Sbjct: 1  STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
          Y+T+LCR + ++G C +G +C F H   E+  
Sbjct: 4  YKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.51
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.48
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.44
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.22
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.19
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.14
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.12
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.74
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.35
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.1
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	96.59
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	94.36

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=4.4e-15  Score=84.60  Aligned_cols=37  Identities=57%  Similarity=0.983  Sum_probs=34.0

Q ss_pred             cCCCCcccccccccccCCCCCCCCCCccCCCCCCCCC
Q psy4482          12 LLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP   48 (133)
Q Consensus        12 ~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~   48 (133)
                      ..+.+|||+||++|...|.|+||++|.|||+++||+.
T Consensus         2 t~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           2 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            4678999999999988899999999999999999984

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-15  Score=84.24  Aligned_cols=35  Identities=54%  Similarity=0.985  Sum_probs=32.0

Q ss_pred             CCCcccccccccccCCCCCCCCCCccCCCCCCCCC
Q psy4482          14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP   48 (133)
Q Consensus        14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~   48 (133)
                      +.+|||+||++|...|.|+||++|+|||+.+||+.
T Consensus         1 ~~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           1 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             CTTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            46899999999987899999999999999999983

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.5e-15  Score=80.58  Aligned_cols=33  Identities=42%  Similarity=1.061  Sum_probs=29.3

Q ss_pred             CCCCcccccccccccCCCCCCCCCCccCCCCCC
Q psy4482          13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE   45 (133)
Q Consensus        13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e   45 (133)
                      +.++|||+||++|...|.|+||++|+|||+.+|
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            457899999999988899999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.2e-13  Score=72.68  Aligned_cols=33  Identities=52%  Similarity=1.326  Sum_probs=30.6

Q ss_pred             CCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482          52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE   84 (133)
Q Consensus        52 ~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~   84 (133)
                      ++|+|||.+|+.|...|.|+||++|.|+|+.++
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            568899999999999999999999999999875

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.6e-12  Score=72.28  Aligned_cols=37  Identities=38%  Similarity=0.921  Sum_probs=33.5

Q ss_pred             CCCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy4482          52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP   88 (133)
Q Consensus        52 ~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~   88 (133)
                      ....|||++|++|...|.|++|++|.|+|+.++++.+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            3467999999999989999999999999999999864

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-12  Score=71.90  Aligned_cols=34  Identities=35%  Similarity=0.967  Sum_probs=31.5

Q ss_pred             CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy4482          54 PHYRTQLCRAYHKAGYCSFGARCIFIHEEREISP   87 (133)
Q Consensus        54 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~   87 (133)
                      .+|||.+|++|...|.|++|++|.|+|+.++++.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            3689999999988899999999999999999985

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.9e-07  Score=45.74  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=20.3

Q ss_pred             cccccccccccCCCCCCCCCCccCCC
Q psy4482          17 YKTEFCRNIDELGVCRYSLKCQFAHH   42 (133)
Q Consensus        17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~   42 (133)
                      .|.++|++| .+|.|..|++|.|.|+
T Consensus         4 kkkelCKfY-vqGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFY-ITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhh-eeeeecCCcCcccccC
Confidence            466788888 5788888888888886

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.7e-06  Score=41.74  Aligned_cols=25  Identities=28%  Similarity=0.967  Sum_probs=21.8

Q ss_pred             cccccccccccccCCCCCCCccCCCC
Q psy4482          57 RTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        57 kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      +..+|++|. +|+|..|+.|.|.|++
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccCC
Confidence            458999887 5999999999999974

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.2e-05  Score=46.30  Aligned_cols=24  Identities=38%  Similarity=0.946  Sum_probs=19.3

Q ss_pred             ccccccccccCCCCCCCccCCCCC
Q psy4482          60 LCRAYHKAGYCSFGARCIFIHEER   83 (133)
Q Consensus        60 ~C~~f~~~G~C~~G~~C~F~H~~~   83 (133)
                      +|++|++.+.|-.|+.|+|+|.+-
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            588888777898889999998543

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=8.3e-05  Score=43.72  Aligned_cols=23  Identities=30%  Similarity=0.686  Sum_probs=20.6

Q ss_pred             cccccccCCCCCCCCCCccCCCC
Q psy4482          21 FCRNIDELGVCRYSLKCQFAHHP   43 (133)
Q Consensus        21 lC~~f~~~G~C~~G~~C~FaH~~   43 (133)
                      .|++|-.++.|-.|++|.|+|.+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999888899999999999964

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0003  Score=37.60  Aligned_cols=27  Identities=26%  Similarity=0.730  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy4482          56 YRTQLCRAYHKAGYCSFGARCIFIHEE   82 (133)
Q Consensus        56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~   82 (133)
                      ..+.+|..|...|+|+.|..|..+|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            356789999999999999999999863

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.0057  Score=32.43  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=25.5

Q ss_pred             CCcccccccccccCCCCCCCCCCccCCCC
Q psy4482          15 PRYKTEFCRNIDELGVCRYSLKCQFAHHP   43 (133)
Q Consensus        15 ~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~   43 (133)
                      ....|.+|..|..-|.|+.|.+|.-+|++
T Consensus         9 ~~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1           9 RPHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCCccchhhhhhhccccCCCCCCcccCcC
Confidence            35678899999888999999999999974