Psyllid ID: psy4515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccccccccccccccccccccHEHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHcHHHccHHHHHHHcccccccccccccHHHcccHHHHHHHHHHcHHHc
Coil and Loop (DISEMBL)
MGERRGTKALEMWCrrapdpcfdtlnfdmgerrgTKALEMWcqcnsdpcfdtldfdmgerrgTKALEMWCRRVtegypgvrvdnmtssWRDGLAFCALIHHFRPDLIFYYATFfvtegypgvrvdnmtssWRDGLAFCALIHHFRPDLM
Flexible Loop (DISEMBL)
mgerrgtkalemwcrrapdpcfdtlNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Low Complexity Region (SEG)
MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Disordered region (IsUnstruct)
*********LEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHF*****
Disordered Region (DISOPRED)
**************************************EMWCQCNS********************EMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Disordered Region (DISEMBL)
********ALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Disordered Region (DISPRO)
******TKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q69ZW3	1231	EH domain-binding protein	yes	N/A	0.355	0.043	0.537	7e-14
Q8NDI1	1231	EH domain-binding protein	no	N/A	0.322	0.038	0.562	1e-13
Q8N3D4	1523	EH domain-binding protein	no	N/A	0.315	0.030	0.574	9e-12
F1QH17	1994	Protein-methionine sulfox	no	N/A	0.308	0.023	0.617	9e-12
P05095	861	Alpha-actinin A OS=Dictyo	yes	N/A	0.389	0.067	0.534	1e-11
P15508	2128	Spectrin beta chain, eryt	no	N/A	0.328	0.023	0.612	1e-11
Q62261	2363	Spectrin beta chain, non-	no	N/A	0.348	0.022	0.566	2e-11
Q01082	2364	Spectrin beta chain, non-	no	N/A	0.348	0.021	0.566	2e-11
P11277	2137	Spectrin beta chain, eryt	no	N/A	0.322	0.022	0.625	2e-11
Q8IY33	904	MICAL-like protein 2 OS=H	no	N/A	0.322	0.053	0.583	2e-11

>sp|Q69ZW3|EHBP1_MOUSE EH domain-binding protein 1 OS=Mus musculus GN=Ehbp1 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 57  MGER-RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           +G++   +++L  WCR VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct: 449 LGQKPNASQSLLAWCREVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 502

May play a role in actin reorganization. Links clathrin-mediated endocytosis to the actin cytoskeleton.
Mus musculus (taxid: 10090)

>sp|Q8NDI1|EHBP1_HUMAN EH domain-binding protein 1 OS=Homo sapiens GN=EHBP1 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 40/48 (83%)

Query: 62  GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
            +++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct: 445 ASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 492

May play a role in actin reorganization. Links clathrin-mediated endocytosis to the actin cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q8N3D4|EH1L1_HUMAN EH domain-binding protein 1-like protein 1 OS=Homo sapiens GN=EHBP1L1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 63   TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
            +++L  WC+ VT GY GVR+ N T+SWR+GLAFCA++H F PD I Y
Sbjct: 1040 SQSLLEWCQEVTTGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDY 1086

Homo sapiens (taxid: 9606)

>sp|F1QH17|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio GN=mical3a PE=2 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 61  RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           R +K L  WC+R TEGY GV V ++T+SW+ GLA CALIH +RPDLI
Sbjct: 523 RSSKLLN-WCQRQTEGYRGVSVSDLTTSWKSGLALCALIHRYRPDLI 568

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P05095|ACTNA_DICDI Alpha-actinin A OS=Dictyostelium discoideum GN=abpA PE=1 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           F   D  + E    +AL +WC+R TEGY  V+V N  +S++DGLAFCALIH  RPDLI
Sbjct: 126 FAIQDISIEELSAKEALLLWCQRKTEGYDRVKVGNFHTSFQDGLAFCALIHKHRPDLI 183

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein. Increases the actin-stimulated ATPase activity of myosin. Involved in vegetative cell growth, phagocytosis, motility and development, probably through stabilization of the actin network in the cortical cytoskeleton.

Dictyostelium discoideum (taxid: 44689)

>sp|P15508|SPTB1_MOUSE Spectrin beta chain, erythrocytic OS=Mus musculus GN=Sptb PE=1 SV=4

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 34/49 (69%)

Query: 59  ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           +R    AL +WC+  T GYP V V N TSSW+DGLAF ALIH  RPDLI
Sbjct: 172 QRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLI 220

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 56  DMGERRGTK-ALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           D  E++  K AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI
Sbjct: 168 DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 220

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Mus musculus (taxid: 10090)

>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 56  DMGERRGTK-ALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           D  E++  K AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI
Sbjct: 168 DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 220

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Homo sapiens (taxid: 9606)

>sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic OS=Homo sapiens GN=SPTB PE=1 SV=5

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 33/48 (68%)

Query: 60  RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           R    AL +WC+  T GYP V V N TSSW+DGLAF ALIH  RPDLI
Sbjct: 173 RSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLI 220

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q8IY33|MILK2_HUMAN MICAL-like protein 2 OS=Homo sapiens GN=MICALL2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA 111
           +AL+ WCR+  EGY  V + NMT+S+RDGLAFCA++H  RPDLI + A
Sbjct: 5   RALQQWCRQQCEGYRDVNICNMTTSFRDGLAFCAILHRHRPDLINFSA 52

May be a cytoskeletal regulator.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
383858085	1084	PREDICTED: uncharacterized protein LOC10	0.342	0.047	0.862	9e-23
270013585	926	hypothetical protein TcasGA2_TC012205 [T	0.348	0.056	0.833	1e-22
307180220	1088	MICAL-like protein 2 [Camponotus florida	0.328	0.045	0.862	2e-22
189240639	987	PREDICTED: similar to MICAL-like CG11259	0.328	0.049	0.862	2e-22
332027292	1029	MICAL-like protein 2 [Acromyrmex echinat	0.328	0.047	0.862	3e-22
340718062	1099	PREDICTED: hypothetical protein LOC10064	0.322	0.043	0.862	7e-22
345482132	850	PREDICTED: hypothetical protein LOC10011	0.328	0.057	0.862	1e-21
350420891	1096	PREDICTED: hypothetical protein LOC10074	0.322	0.043	0.843	2e-21
195457072	1103	GK17790 [Drosophila willistoni] gi|19417	0.342	0.046	0.823	4e-21
380023178	1087	PREDICTED: uncharacterized protein LOC10	0.342	0.046	0.803	1e-20

>gi|383858085|ref|XP_003704533.1| PREDICTED: uncharacterized protein LOC100881207 [Megachile rotundata]

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 49/51 (96%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTKALE+WCRR+TEGYPGV V NMT+SW+DGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKALELWCRRITEGYPGVNVQNMTTSWKDGLAFCAMIHHFRPDLI 51

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013585|gb|EFA10033.1| hypothetical protein TcasGA2_TC012205 [Tribolium castaneum]

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/54 (83%), Positives = 49/54 (90%)

Query: 54  DFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           D  MGERRGTK LE+WCRR+TEGYPGV V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 17  DAKMGERRGTKGLELWCRRMTEGYPGVNVTNMTTSWRDGLAFCAIIHHFRPDLI 70

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180220|gb|EFN68253.1| MICAL-like protein 2 [Camponotus floridanus]

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 49/51 (96%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTKALE+WCRR+T+GYPGV V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKALELWCRRITDGYPGVNVQNMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240639|ref|XP_001809361.1| PREDICTED: similar to MICAL-like CG11259-PA [Tribolium castaneum]

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 48/51 (94%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTK LE+WCRR+TEGYPGV V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKGLELWCRRMTEGYPGVNVTNMTTSWRDGLAFCAIIHHFRPDLI 51

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027292|gb|EGI67376.1| MICAL-like protein 2 [Acromyrmex echinatior]

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 49/51 (96%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTKALE+WCRR+T+GYPGV V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKALELWCRRITDGYPGVNVQNMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718062|ref|XP_003397491.1| PREDICTED: hypothetical protein LOC100649179 [Bombus terrestris]

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTKALE WCRR+TEGYP V V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKALEFWCRRITEGYPDVNVQNMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482132|ref|XP_001602531.2| PREDICTED: hypothetical protein LOC100118598 [Nasonia vitripennis]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/51 (86%), Positives = 49/51 (96%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGERRGTKALE+WCRR+T+GYPGV V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGERRGTKALELWCRRITDGYPGVNVQNMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420891|ref|XP_003492663.1| PREDICTED: hypothetical protein LOC100744222 [Bombus impatiens]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MGE+RGTKALE WCRR+TEGYP V V NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MGEKRGTKALEFWCRRITEGYPDVNVQNMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457072|ref|XP_002075413.1| GK17790 [Drosophila willistoni] gi|194171498|gb|EDW86399.1| GK17790 [Drosophila willistoni]

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/51 (82%), Positives = 48/51 (94%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           M ERRGTKALE WCRR+TEGY GV+++NMT+SWRDGLAFCA+IHHFRPDLI
Sbjct: 1   MAERRGTKALEHWCRRMTEGYDGVKIENMTTSWRDGLAFCAMIHHFRPDLI 51

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023178|ref|XP_003695403.1| PREDICTED: uncharacterized protein LOC100866046 [Apis florea]

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 47/51 (92%)

Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           M E+RGTKALE+WCRR+TEGYP V V NMT+SW+DGLAFCA+IHHFRPDLI
Sbjct: 1   MSEKRGTKALELWCRRITEGYPDVNVQNMTTSWKDGLAFCAMIHHFRPDLI 51

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0036333	1010	MICAL-like "MICAL-like" [Droso	0.308	0.045	0.804	2.6e-16
MGI|MGI:2667252	1231	Ehbp1 "EH domain binding prote	0.355	0.043	0.537	2.4e-12
UNIPROTKB|E1BY88	1139	EHBP1 "Uncharacterized protein	0.624	0.081	0.373	2.7e-12
UNIPROTKB|F1LVX2	1192	Ehbp1 "Protein Ehbp1" [Rattus	0.355	0.044	0.518	4.7e-12
UNIPROTKB|Q8NDI1	1231	EHBP1 "EH domain-binding prote	0.355	0.043	0.518	4.9e-12
UNIPROTKB|F1MQA8	1232	EHBP1 "Uncharacterized protein	0.355	0.043	0.518	4.9e-12
WB|WBGene00004855	4166	sma-1 [Caenorhabditis elegans	0.348	0.012	0.603	2.5e-11
FB|FBgn0034180	1141	Ehbp1 "Eps15 homology domain c	0.302	0.039	0.608	6.6e-11
UNIPROTKB|J3KSK6	496	MICAL3 "Protein-methionine sul	0.523	0.157	0.444	8.8e-11
UNIPROTKB|J9NSY0	625	SPTBN4 "Uncharacterized protei	0.348	0.083	0.584	1e-10

FB|FBgn0036333 MICAL-like "MICAL-like" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 37/46 (80%), Positives = 43/46 (93%)

Query:    62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             GTKALE WCR VT+GY GV+V+NMT+SWR+GLAFCA+IHHFRPDLI
Sbjct:    12 GTKALEYWCRVVTQGYNGVKVENMTTSWRNGLAFCAIIHHFRPDLI 57

GO:0003779 "actin binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2667252 Ehbp1 "EH domain binding protein 1" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query:    57 MGER-RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             +G++   +++L  WCR VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct:   449 LGQKPNASQSLLAWCREVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 502

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BY88 EHBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 37/99 (37%), Positives = 59/99 (59%)

Query:    15 RRAPDP--CFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFD-MGER-RGTKALEMWC 70
             R+AP+P         +M E     A+    + +S P    +    +G +   +++L +WC
Sbjct:   365 RKAPEPPNLLPKTETNMSEN--VSAIPASRELSSSPKPSPIPSPVLGRKPNASQSLLVWC 422

Query:    71 RRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             + VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct:   423 KEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 461

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1LVX2 Ehbp1 "Protein Ehbp1" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 28/54 (51%), Positives = 43/54 (79%)

Query:    57 MGER-RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             +G++   +++L  WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct:   409 LGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 462

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8NDI1 EHBP1 "EH domain-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 28/54 (51%), Positives = 43/54 (79%)

Query:    57 MGER-RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             +G +   +++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct:   439 LGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 492

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MQA8 EHBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 176 (67.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 28/54 (51%), Positives = 43/54 (79%)

Query:    57 MGER-RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             +G +   +++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct:   440 LGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 493

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00004855 sma-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 175 (66.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query:    56 DMGERRGTK-ALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             + GER+  K AL +WC+R T GYP VR++N T+SWR+GLAF ALIH  RPDL+
Sbjct:   269 ERGERKHAKDALLLWCQRKTAGYPNVRIENFTTSWRNGLAFNALIHSHRPDLV 321

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0046622 "positive regulation of organ growth" evidence=IMP

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IGI;IMP

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

FB|FBgn0034180 Ehbp1 "Eps15 homology domain containing protein-binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query:    62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             G   LE WC+ VT+ YP V+V N+T+SWR+G+AFCA+IHHF P+LI
Sbjct:   461 GQDLLE-WCKEVTKDYPNVKVTNLTTSWRNGMAFCAIIHHFVPELI 505

GO:0005509 "calcium ion binding" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0045035 "sensory organ precursor cell division" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0031941 "filamentous actin" evidence=IDA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

UNIPROTKB|J3KSK6 MICAL3 "Protein-methionine sulfoxide oxidase MICAL3" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 36/81 (44%), Positives = 47/81 (58%)

Query:    27 FDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMT 86
             +D GE +    LEM    NS      L  +    R +K L  WC+R T+GY GV V ++T
Sbjct:     7 YDTGETKDIH-LEMESLVNSRTT-PKLTRNESVARSSKLLG-WCQRQTDGYAGVNVTDLT 63

Query:    87 SSWRDGLAFCALIHHFRPDLI 107
              SW+ GLA CA+IH +RPDLI
Sbjct:    64 MSWKSGLALCAIIHRYRPDLI 84

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9NSY0 SPTBN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query:    56 DMGERRGTK-ALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             D  E R  K AL +WC+  T GYP V + N T+SWRDGLAF ALIH  RPDL+
Sbjct:   176 DNRETRSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLV 228

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	8e-15
smart00033	101	smart00033, CH, Calponin homology domain	2e-13
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	1e-12
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	1e-11
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	1e-10
smart00033	101	smart00033, CH, Calponin homology domain	2e-09
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	3e-09
pfam11971	85	pfam11971, CAMSAP_CH, CAMSAP CH domain	4e-08
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	6e-08
pfam11971	85	pfam11971, CAMSAP_CH, CAMSAP CH domain	2e-07

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 65.4 bits (160), Expect = 8e-15
 Identities = 21/44 (47%), Positives = 24/44 (54%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           KAL  W   V   Y G+ V N     RDGLA CAL++  RP LI
Sbjct: 2   KALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLI 45

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           K L  W   +   Y    V N +S  +DG+A CAL++   P L+
Sbjct: 1   KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLV 44

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 69  WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
           W  +V   Y  V ++N ++  +DG+A C L++   PDLI   
Sbjct: 9   WINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKK 50

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 68  MWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           +WC   T GY P V   +   SWRDGLAF ALIH  RPD +  
Sbjct: 132 LWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDP 174

Length = 612

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           V   Y G+ V N     RDGLA CAL++  RP L+
Sbjct: 11  VLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLI 45

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           +   Y    V N +S  +DG+A CAL++   P L+
Sbjct: 10  LLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLV 44

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           V   Y  V ++N ++  +DG+A C L++   PDL+
Sbjct: 13  VLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLI 47

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 70  CRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
                       V+N+T  + DG A  ALIH + P L+
Sbjct: 1   YVSARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLV 38

This domain is the N-terminal CH domain from the CAMSAP proteins. Length = 85

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 115 VTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
            T GY P V   +   SWRDGLAF ALIH  RPD +
Sbjct: 137 DTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL 172

Length = 612

>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
                    V+N+T  + DG A  ALIH + P L+
Sbjct: 4   ARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLV 38

This domain is the N-terminal CH domain from the CAMSAP proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG0517|consensus	2473		99.93
KOG0035|consensus	890		99.67
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	99.28
KOG0517|consensus	2473		99.25
smart00033	103	CH Calponin homology domain. Actin binding domains	98.77
cd00014	107	CH Calponin homology domain; actin-binding domain	98.56
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.52
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	98.26
KOG0035|consensus	890		98.24
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	97.67
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	97.19
smart00033	103	CH Calponin homology domain. Actin binding domains	96.05
cd00014	107	CH Calponin homology domain; actin-binding domain	95.07
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	94.7
KOG0046|consensus	627		94.45
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	92.05

>KOG0517|consensus

Probab=99.93  E-value=2.2e-27  Score=225.82  Aligned_cols=135  Identities=30%  Similarity=0.454  Sum_probs=112.9

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccccccccchHHHHHHHHHHhhCCCCCe
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGV   80 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v   80 (149)
                      +|||-|+.-..+-.-.+.+  .+|+++|--.+  +||+    +.|++|+++++|.. .++++|++||+|||++|+|||||
T Consensus       110 dKaLqFLkeqkVhLEniGs--hDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~-E~rSAKDALLLWCQmKTAGYpnV  186 (2473)
T KOG0517|consen  110 DKALQFLKEQKVHLENIGS--HDIVDGNHRLILGLIWTIILRFQIQDISIETEDNR-ETRSAKDALLLWCQMKTAGYPNV  186 (2473)
T ss_pred             HHHHHHHHhcccccccCCc--ccccCCcchhhHHHHHHHHHheeeeeeEeecccch-hhhhHHHHHHHHHHhhccCCCCc
Confidence            6888888776666666655  45999998544  9999    67889999987776 77889999999999999999999


Q ss_pred             eecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCC-ccccCCCCCcchhhhHHHHHHhhh
Q psy4515          81 RVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYP-GVRVDNMTSSWRDGLAFCALIHHF  144 (149)
Q Consensus        81 ~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p-~V~v~nfs~sw~dgla~~ali~~~  144 (149)
                      +|+|||+|||||+||+||||++||||+||++            +|.+++   |++ -++.+|....-+|..++++|+..|
T Consensus       187 NI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v~~PDEKSIITYV~~Y  266 (2473)
T KOG0517|consen  187 NITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNVEQPDEKSIITYVVTY  266 (2473)
T ss_pred             ccccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCccCCCcchHHHHHHHH
Confidence            9999999999999999999999999999997            577777   443 347888877778888877777544

>KOG0035|consensus

Probab=99.67  E-value=1.4e-17  Score=153.35  Aligned_cols=135  Identities=30%  Similarity=0.484  Sum_probs=111.5

Q ss_pred             cchhhhhhhccCCCcccccccccccccccccee--eehhhccCCCcccccccccc-ccchHHHHHHHHHHhhCCCCCeee
Q psy4515           6 GTKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFDTLDFDMG-ERRGTKALEMWCRRVTEGYPGVRV   82 (149)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~-~~~~k~~LL~W~q~~~~~y~~v~v   82 (149)
                      ..+||++....+.+.+.+.+..  +.++|+++.  .+|+++..   +.++++... +.++++.||+|||++|++|.+++|
T Consensus        89 ~~~~l~~~~sk~v~~~~iga~e--ivd~n~~~~l~~i~tlilr---~~i~~is~~~e~~a~egllLwcq~~Ta~y~~v~v  163 (890)
T KOG0035|consen   89 VNKALVFIESKGVKLVSIGAEE--IVDGNLKLTLGLIWTLILR---FAIQDISVECELSAKEGLLLWCQRKTAPYSNVNV  163 (890)
T ss_pred             ccceEEEeccccccccccchhh--hcCcchhhhhHHHHHhhcc---ccccchhhhcchhhhhhhhhheecccCCcccccc
Confidence            4689999999999999999888  888888666  78876665   345666665 778899999999999999999999


Q ss_pred             cCCCcccccchhhhhhhhccCCCccC-ccc------------hhccccCC---C-ccccCCCCC-cchhhhHHHHHHhhh
Q psy4515          83 DNMTSSWRDGLAFCALIHHFRPDLIF-YYA------------TFFVTEGY---P-GVRVDNMTS-SWRDGLAFCALIHHF  144 (149)
Q Consensus        83 ~nf~~sw~dG~a~~Alih~~rP~lid-~~~------------~~~vteg~---p-~V~v~nfs~-sw~dgla~~ali~~~  144 (149)
                      .||+.||+||++|||+||++||+++| |+.            ++.+++.+   | -++.+|+.. +-+|.++.++|+..+
T Consensus       164 ~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~~  243 (890)
T KOG0035|consen  164 QNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSSY  243 (890)
T ss_pred             ccceecccchHHHHHHHHhcChhhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhhc
Confidence            99999999999999999999999999 876            56677643   2 236666554 478999999998766


Q ss_pred             C
Q psy4515         145 R  145 (149)
Q Consensus       145 r  145 (149)
                      +
T Consensus       244 ~  244 (890)
T KOG0035|consen  244 Y  244 (890)
T ss_pred             c
Confidence            5

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=99.28  E-value=4.4e-13  Score=117.21  Aligned_cols=102  Identities=30%  Similarity=0.397  Sum_probs=76.0

Q ss_pred             cchhhhhhhccCCCccccccccccccccccce-e-eehhhccCCCccccccccccccchHHHHHHHHHHhhCCC-CCeee
Q psy4515           6 GTKALEMWCRRAPDPCFDTLNFDMGERRGTKA-L-EMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGY-PGVRV   82 (149)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~w~~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y-~~v~v   82 (149)
                      -|++||+....+.+.. -...-+ +++++.+. + +||+.+.+...-++..  +++-+.+..+++||++.+++| |.+.+
T Consensus        72 vs~~le~ik~kg~~l~-Nigp~d-ivdGn~klilGliw~lisr~tia~inE--egelt~~~~lllwc~~~t~~y~p~vd~  147 (612)
T COG5069          72 VSGRLEFIKGKGVKLF-NIGPQD-IVDGNPKLILGLIWSLISRLTIATINE--EGELTKHINLLLWCDEDTGGYKPEVDT  147 (612)
T ss_pred             cccceeeeccCCceee-eeCccc-cccCchhhhheeeeeeeehhhhhcccc--hhhHHhhhhhheeccccccCcCCCccH
Confidence            3688999998885443 333333 67777755 3 7777665533323322  234667788999999999998 55999


Q ss_pred             cCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          83 DNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        83 ~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      .+|+.|||||+|||||||.+|||.+|+.-
T Consensus       148 ~df~rswrdGLaf~aLIh~~rPDtld~n~  176 (612)
T COG5069         148 FDFFRSWRDGLAFSALIHDSRPDTLDPNV  176 (612)
T ss_pred             HHHHHHhhhhHHHHHHHhhcCCcccCccc
Confidence            99999999999999999999999998653

>KOG0517|consensus

Probab=99.25  E-value=2.6e-12  Score=124.41  Aligned_cols=88  Identities=34%  Similarity=0.619  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc--------------Cccc---------------
Q psy4515          61 RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI--------------FYYA---------------  111 (149)
Q Consensus        61 ~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li--------------d~~~---------------  111 (149)
                      -+||+..+||+....+ .++.|.|+=++-+||+.+.-|+.-..-+.+              |.++               
T Consensus        48 vQKKTFTKWvNShL~r-v~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEni  126 (2473)
T KOG0517|consen   48 VQKKTFTKWVNSHLAR-VSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENI  126 (2473)
T ss_pred             HHHHhHHHHHHHHHHH-hcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccC
Confidence            3589999999999977 489999999999999986655532111111              1110               


Q ss_pred             -------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHHh
Q psy4515         112 -------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALIH  142 (149)
Q Consensus       112 -------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali~  142 (149)
                                                                       |+..|.|||+|+|+||++||+|||||.|+||
T Consensus       127 GshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIH  206 (2473)
T KOG0517|consen  127 GSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIH  206 (2473)
T ss_pred             CcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHH
Confidence                                                             3467889999999999999999999999999


Q ss_pred             hhCCCCC
Q psy4515         143 HFRPDLM  149 (149)
Q Consensus       143 ~~rP~Li  149 (149)
                      ++|||||
T Consensus       207 kHRPDLv  213 (2473)
T KOG0517|consen  207 KHRPDLV  213 (2473)
T ss_pred             hcCcchh
Confidence            9999996

>smart00033 CH Calponin homology domain

Probab=98.77  E-value=2.6e-09  Score=73.94  Aligned_cols=48  Identities=27%  Similarity=0.486  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc
Q psy4515          63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      ++.++.||+..+..+.+..++||..+|+||.++|+|++.+.|+.++..
T Consensus         2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~   49 (103)
T smart00033        2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKK   49 (103)
T ss_pred             hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChh
Confidence            578999999999998778999999999999999999999999998764

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=98.56  E-value=2.4e-08  Score=69.69  Aligned_cols=50  Identities=30%  Similarity=0.606  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      .++.++.||+..+..+....++||..+|+||.++|+|++.+.|+.+++..
T Consensus         2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~   51 (107)
T cd00014           2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKK   51 (107)
T ss_pred             hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccc
Confidence            46889999999999987668999999999999999999999999986653

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.52  E-value=1.2e-07  Score=66.23  Aligned_cols=50  Identities=34%  Similarity=0.564  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhCCC-CCeeecCCCcccccchhhhhhhhccCCCccCccch
Q psy4515          63 TKALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT  112 (149)
Q Consensus        63 k~~LL~W~q~~~~~y-~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~  112 (149)
                      ++.|+.|++..+..+ ++..|+||..+|+||.++|.||+.+.|+.+++...
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~   51 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKI   51 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGS
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhc
Confidence            468999999999886 36789999999999999999999999998876653

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=98.26  E-value=1.3e-07  Score=65.70  Aligned_cols=42  Identities=31%  Similarity=0.516  Sum_probs=35.5

Q ss_pred             HHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        69 W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      |.+.+... .+..|.||+.|++||.++|+|||+|.|++++++.
T Consensus         1 ~~~~~~~~-~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~   42 (85)
T PF11971_consen    1 WVNARCAP-YFPPVEDLTQDLSDGRALCALIHFYCPQLLPLED   42 (85)
T ss_pred             CCCcccCC-CCcchhhhhhhhccHHHHHHHHHHhCcceecHhH
Confidence            44444444 4789999999999999999999999999999876

>KOG0035|consensus

Probab=98.24  E-value=3.5e-07  Score=85.38  Aligned_cols=38  Identities=55%  Similarity=0.980  Sum_probs=35.6

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++++|..|.+|+|.||+.+|++|++|||++|++||+||
T Consensus       151 cq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli  188 (890)
T KOG0035|consen  151 CQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLI  188 (890)
T ss_pred             eecccCCccccccccceecccchHHHHHHHHhcChhhh
Confidence            35788899999999999999999999999999999986

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=97.67  E-value=1.3e-05  Score=71.02  Aligned_cols=37  Identities=54%  Similarity=0.811  Sum_probs=31.9

Q ss_pred             hccccCC-CccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         113 FFVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       113 ~~vteg~-p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      .+.+.+| |.+++-+|..+|+||++||++||.+|||++
T Consensus       135 ~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtl  172 (612)
T COG5069         135 DEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL  172 (612)
T ss_pred             cccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCccc
Confidence            3555666 569999999999999999999999999964

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=97.19  E-value=0.00018  Score=50.01  Aligned_cols=32  Identities=38%  Similarity=0.618  Sum_probs=28.7

Q ss_pred             CCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       118 g~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ......|+||..++.||.++|++||+|+|++|
T Consensus         7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l   38 (85)
T PF11971_consen    7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLL   38 (85)
T ss_pred             CCCCcchhhhhhhhccHHHHHHHHHHhCccee
Confidence            44567899999999999999999999999975

>smart00033 CH Calponin homology domain

Probab=96.05  E-value=0.0021  Score=43.98  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=28.7

Q ss_pred             ccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       116 teg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      .+.+.+..++||..+|+||.++|++++.+.|+.+
T Consensus        13 l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i   46 (103)
T smart00033       13 LAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSV   46 (103)
T ss_pred             cccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcC
Confidence            3444467889999999999999999999999864

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=95.07  E-value=0.0064  Score=42.00  Aligned_cols=32  Identities=34%  Similarity=0.845  Sum_probs=27.2

Q ss_pred             CCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       118 g~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      .+..+.++||..+|+||..+|.+++.+.|+.+
T Consensus        16 ~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~   47 (107)
T cd00014          16 EYGPVTINNFSTDLKDGIALCKLLNSLSPDLI   47 (107)
T ss_pred             cCCCccHHHHHHHHhchHHHHHHHHHHCcccc
Confidence            33335789999999999999999999999864

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=94.70  E-value=0.031  Score=38.48  Aligned_cols=30  Identities=37%  Similarity=0.750  Sum_probs=26.7

Q ss_pred             CccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         120 PGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       120 p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..++||..+|+||..+|.+++.+.|+.+
T Consensus        17 ~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i   46 (108)
T PF00307_consen   17 KGRRVTNFSEDLRDGVVLCKLINKLFPGTI   46 (108)
T ss_dssp             TTSTCSSTSGGGTTSHHHHHHHHHHSTTSS
T ss_pred             CCCCcCcHHHHhcCHHHHHHHHHHHhhccc
Confidence            367888999999999999999999999854

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG0046|consensus

Probab=94.45  E-value=0.063  Score=48.54  Aligned_cols=89  Identities=20%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             ccchHHHHHHHHHHhhC--CCCCeeecCCCcccccchhhhhhhhccCCCccCccch------------hccccC---CCc
Q psy4515          59 ERRGTKALEMWCRRVTE--GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT------------FFVTEG---YPG  121 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~--~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~------------~~vteg---~p~  121 (149)
                      +-++.+.||+|.+.+.+  +| .-.++||+++..||-+..-+++...|+..+-...            .+.++.   -+.
T Consensus       262 ~L~PEkiLLrW~N~HL~kag~-~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l~RA~~vLq~Aekl~Cr~~  340 (627)
T KOG0046|consen  262 RLPPEKILLRWMNYHLKKAGW-KKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDLERAELVLQQAEKLDCRRY  340 (627)
T ss_pred             cCCHHHHHHHHHHHHHHhccc-ceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChHhHHHHHHHHHHhcCCccc
Confidence            45778999999998885  44 3467999999999999888998888877754321            112221   111


Q ss_pred             cccCCCCC-cchhhhHHHHHHhhhCCCC
Q psy4515         122 VRVDNMTS-SWRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       122 V~v~nfs~-sw~dgla~~ali~~~rP~L  148 (149)
                      +..++... +-+=-+||+|-+-+.||.|
T Consensus       341 ltp~dvV~G~~kLNLAFVA~lFn~~pgL  368 (627)
T KOG0046|consen  341 LTPTDVVAGNPKLNLAFVANLFNTHPGL  368 (627)
T ss_pred             cCHHHHhcCCchhhHHHHHHhcccCCCC
Confidence            22222111 1122378888888888875

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=92.05  E-value=0.057  Score=41.41  Aligned_cols=43  Identities=16%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             HHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          66 LEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        66 LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      |+.|.+...-   ...+.|+..+|.||+.+..|+++|.|.++|+..
T Consensus         1 l~~WL~~l~l---s~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~   43 (158)
T PF06294_consen    1 LLKWLQSLDL---SRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHN   43 (158)
T ss_dssp             HHHHHHHS-----S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS
T ss_pred             ChHHHhcCCC---CCCCCchHHHcccccHHHHHHHHHCCCCccccc
Confidence            6789998331   345678888999999999999999999987754

; PDB: 2EE7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2d89_A	119	Solution Structure Of The Ch Domain From Human Eh D		8e-14
2d89_A	119	Solution Structure Of The Ch Domain From Human Eh D		9e-10
1bkr_A	109	Calponin Homology (Ch) Domain From Human Beta-Spect		7e-12
1bkr_A	109	Calponin Homology (Ch) Domain From Human Beta-Spect		3e-08
1aa2_A	108	Calponin Homology (Ch) Domain From Human Beta-Spect		1e-11
1aa2_A	108	Calponin Homology (Ch) Domain From Human Beta-Spect		3e-08
1wyq_A	127	Solution Structure Of The Second Ch Domain Of Human		2e-11
1wyq_A	127	Solution Structure Of The Second Ch Domain Of Human		3e-08
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		3e-11
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		4e-06
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		3e-11
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		4e-06
2d88_A	121	Solution Structure Of The Ch Domain From Human Mica		4e-11
2d88_A	121	Solution Structure Of The Ch Domain From Human Mica		9e-08
2e9k_A	121	Solution Structure Of The Ch Domain From Human Mica		8e-11
2e9k_A	121	Solution Structure Of The Ch Domain From Human Mica		1e-07
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		1e-10
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		2e-05
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		3e-10
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		5e-05
2dk9_A	118	Solution Structure Of Calponin Homology Domain Of H		8e-10
2dk9_A	118	Solution Structure Of Calponin Homology Domain Of H		3e-07
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		2e-09
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		1e-05
1wyl_A	116	Solution Structure Of The Ch Domain Of Human Nedd9		2e-09
1wyl_A	116	Solution Structure Of The Ch Domain Of Human Nedd9		3e-07
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		6e-09
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		2e-06
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		9e-09
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		6e-06
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		9e-09
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		6e-06
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		2e-08
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		1e-05
2d87_A	128	Solution Structure Of The Ch Domain From Human Smoo		2e-08
2d87_A	128	Solution Structure Of The Ch Domain From Human Smoo		7e-06
2jv9_A	119	The Solution Structure Of Calponin Homology Domain		5e-08
1bhd_A	118	Second Calponin Homology Domain From Utrophin Lengt		5e-08
1bhd_A	118	Second Calponin Homology Domain From Utrophin Lengt		2e-04
1qag_A	226	Actin Binding Region Of The Dystrophin Homologue Ut		9e-08
1qag_A	226	Actin Binding Region Of The Dystrophin Homologue Ut		2e-04

>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 61  RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
             +++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct: 9   NASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 57

>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 31/35 (88%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDL+
Sbjct: 21  VTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI 55

>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 59  ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           ++    AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI
Sbjct: 1   KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49

>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T GYP V + N T+SWRDG+AF ALIH  RPDL+
Sbjct: 16  TAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49

>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 60  RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           +    AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI
Sbjct: 1   KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48

>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T GYP V + N T+SWRDG+AF ALIH  RPDL+
Sbjct: 15  TAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48

>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           G      AL +WC+  T GYP V V N T+SWRDGLAF A++H  RPDL+
Sbjct: 4   GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53

>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T GYP V V N T+SWRDGLAF A++H  RPDL+
Sbjct: 20  TAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +WC+R T  Y  V V N  +SW+DGLA CALIH  RPDLI Y
Sbjct: 125 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY 184

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V V N  +SW+DGLA CALIH  RPDL+
Sbjct: 149 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 182

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +WC+R T  Y  V V N  +SW+DGLA CALIH  RPDLI Y
Sbjct: 129 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY 188

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V V N  +SW+DGLA CALIH  RPDL+
Sbjct: 153 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186

>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           G  R +K L  WC+R T+GY GV V ++T SW+ GLA CA+IH +RPDLI
Sbjct: 7   GVARSSKLLG-WCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55

>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T+GY GV V ++T SW+ GLA CA+IH +RPDL+
Sbjct: 22  TDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55

>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           G+ R +K L  WC++ TEGY  V V ++T+SWR GLA CA+IH FRP+LI +
Sbjct: 7   GDIRPSKLL-TWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINF 57

>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           TEGY  V V ++T+SWR GLA CA+IH FRP+L+
Sbjct: 22  TEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELI 55

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +WC+R T  Y  V + N   SW+DGL FCALIH  RP+LI Y
Sbjct: 109 FAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 168

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V + N   SW+DGL FCALIH  RP+L+
Sbjct: 133 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPELI 166

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +WC+R T  Y  V V N   SW+DGLAF ALIH  RP+LI Y
Sbjct: 114 FAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEY 173

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V V N   SW+DGLAF ALIH  RP+L+
Sbjct: 138 TAPYKNVNVQNFHISWKDGLAFNALIHRHRPELI 171

>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human Mical-1 Length = 118

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           MG     + L  WC+  T GYPGV V +++SSW DGLA CAL++  +P L+
Sbjct: 9   MGSAGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 59

>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human Mical-1 Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T GYPGV V +++SSW DGLA CAL++  +P L+
Sbjct: 26  TAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 59

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +W +R T  Y  V + N   SW+DGL FCALIH  RP+LI Y
Sbjct: 110 FAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 169

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V + N   SW+DGL FCALIH  RP+L+
Sbjct: 134 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPELI 167

>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9 Interacting Protein With Calponin Homology And Lim Domains Length = 116

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 69  WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           WC+  T GYPGV V +++SSW DGLA CAL++  +P L+
Sbjct: 15  WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53

>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9 Interacting Protein With Calponin Homology And Lim Domains Length = 116

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T GYPGV V +++SSW DGLA CAL++  +P L+
Sbjct: 20  TAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 57  MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
           + +    K L  W R+ T  YP V V N T+SW DGLA  ALIH  RPDL
Sbjct: 131 LQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           T  YP V V N T+SW DGLA  ALIH  RPDL
Sbjct: 148 TRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 62  GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             + L +W +R+ EGY G+R DN TSSWRDG  F A+IH  +P LI
Sbjct: 137 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 182

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           + EGY G+R DN TSSWRDG  F A+IH  +P L+
Sbjct: 148 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 182

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 62  GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             + L +W +R+ EGY G+R DN TSSWRDG  F A+IH  +P LI
Sbjct: 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 235

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           + EGY G+R DN TSSWRDG  F A+IH  +P L+
Sbjct: 201 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 235

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 62  GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             + L +W +R+ EGY G+R DN T+SWRDG  F A+IH  +P LI
Sbjct: 134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 179

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           + EGY G+R DN T+SWRDG  F A+IH  +P L+
Sbjct: 145 MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 179

>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 69  WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           WCR  T GY  V + N +SSW DG+AFCAL+H+F P+   Y
Sbjct: 15  WCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDY 55

>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPD 147
           T GY  V + N +SSW DG+AFCAL+H+F P+
Sbjct: 20  TRGYEHVDIQNFSSSWSDGMAFCALVHNFFPE 51

>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 62  GTKALEM-WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYP 120
           G+K + + WCR +T  Y  V + N +SSW  G+AFCALIH F P+   Y       E  P
Sbjct: 4   GSKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDY------AELDP 57
Query: 121 GVRVDNMTSSWR--DGLAFCALI 141
             R  N T ++   + LA CA +
Sbjct: 58  AKRRHNFTLAFSTAEKLADCAQL 80

>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 56  DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
           D+ +    K L  W R+ T  Y  V V N T+SW DGLAF A++H  +PDL
Sbjct: 3   DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53

>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           T  Y  V V N T+SW DGLAF A++H  +PDL
Sbjct: 21  TRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53

>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 56  DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
           D+ +    K L  W R+ T  Y  V V N T+SW DGLAF A++H  +PDL
Sbjct: 116 DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 166

>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           T  Y  V V N T+SW DGLAF A++H  +PDL
Sbjct: 134 TRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	4e-28
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	3e-20
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	5e-28
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	2e-20
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	9e-28
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	4e-20
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	1e-27
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	2e-20
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	1e-27
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	1e-20
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	1e-27
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	1e-20
1wyl_A	116	NEDD9 interacting protein with calponin homology a	2e-27
1wyl_A	116	NEDD9 interacting protein with calponin homology a	2e-20
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	3e-19
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	3e-13
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	6e-18
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-11
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	2e-17
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	6e-12
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	3e-17
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	1e-12
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	4e-17
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	1e-11
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	1e-15
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	2e-10
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	2e-15
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	2e-11
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	9e-15
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	8e-12
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	2e-13
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-11
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	9e-11
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-07
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	5e-13
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	1e-11
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	1e-09
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	9e-08

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118

 Score = 99.3 bits (248), Expect = 4e-28
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 56  DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           D+ +    K L  W R+ T  Y  V V N T+SW DGLAF A++H  +PDL 
Sbjct: 3   DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF 54

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118

 Score = 79.2 bits (196), Expect = 3e-20
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T  Y  V V N T+SW DGLAF A++H  +PDL
Sbjct: 20  TTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127

 Score = 99.7 bits (249), Expect = 5e-28
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           G      AL +WC+  T GYP V V N T+SWRDGLAF A++H  RPDL+
Sbjct: 4   GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T GYP V V N T+SWRDGLAF A++H  RPDL
Sbjct: 19  KTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDL 52

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109

 Score = 98.5 bits (246), Expect = 9e-28
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 59  ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           ++    AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI
Sbjct: 1   KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109

 Score = 78.4 bits (194), Expect = 4e-20
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T GYP V + N T+SWRDG+AF ALIH  RPDL
Sbjct: 15  KTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDL 48

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 98.2 bits (245), Expect = 1e-27
 Identities = 26/50 (52%), Positives = 39/50 (78%)

Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
                +++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI
Sbjct: 6   SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI 55

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 22/34 (64%), Positives = 30/34 (88%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDL
Sbjct: 21  VTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDL 54

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128

 Score = 98.6 bits (246), Expect = 1e-27
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           + L  WCR  T GY  V + N +SSW DG+AFCAL+H+F P+  
Sbjct: 10  QMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAF 53

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128

 Score = 80.5 bits (199), Expect = 1e-20
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T GY  V + N +SSW DG+AFCAL+H+F P+ 
Sbjct: 19  KTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEA 52

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121

 Score = 98.1 bits (245), Expect = 1e-27
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
             L  WC+R T+GY GV V ++T SW+ GLA CA+IH +RPDLI
Sbjct: 12  SKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121

 Score = 80.4 bits (199), Expect = 1e-20
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T+GY GV V ++T SW+ GLA CA+IH +RPDL
Sbjct: 21  QTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDL 54

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116

 Score = 97.4 bits (243), Expect = 2e-27
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           + L  WC+  T GYPGV V +++SSW DGLA CAL++  +P L+
Sbjct: 10  EELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116

 Score = 79.6 bits (197), Expect = 2e-20
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T GYPGV V +++SSW DGLA CAL++  +P L
Sbjct: 19  QTAGYPGVHVSDLSSSWADGLALCALVYRLQPGL 52

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 28/58 (48%), Positives = 34/58 (58%)

Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           F   D  + E    + L +WC+R T  Y  V V N  +SW+DGLA CALIH  RPDLI
Sbjct: 129 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           T  Y  V V N  +SW+DGLA CALIH  RPDL+
Sbjct: 153 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 78.4 bits (192), Expect = 6e-18
 Identities = 26/60 (43%), Positives = 33/60 (55%)

Query: 50  FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           F   D  + E    + L +W +R T  Y  V + N   SW+DGL FCALIH  RP+LI Y
Sbjct: 110 FAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 169

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 60.7 bits (146), Expect = 1e-11
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           T  Y  V + N   SW+DGL FCALIH  RP+L
Sbjct: 134 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 166

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
            +    + L +W +R+ EGY G+R DN T+SWRDG  F A+IH  +P LI  
Sbjct: 130 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDM 181

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 60.4 bits (146), Expect = 6e-12
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           + EGY G+R DN T+SWRDG  F A+IH  +P L
Sbjct: 145 MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPML 178

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 75.0 bits (184), Expect = 3e-17
 Identities = 8/55 (14%), Positives = 21/55 (38%)

Query: 56  DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
           ++ +    + L  W     E     +++N ++  +D  A+  L++   P      
Sbjct: 163 ELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 217

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 114 FVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           F  E     +++N ++  +D  A+  L++   P   
Sbjct: 179 FHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ 214

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 74.8 bits (183), Expect = 4e-17
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 58  GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
            +    + L +W +R+ EGY G+R DN TSSWRDG  F A+IH  +P LI  
Sbjct: 186 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDM 237

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           + EGY G+R DN TSSWRDG  F A+IH  +P L
Sbjct: 201 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLL 234

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 25/57 (43%), Positives = 31/57 (54%)

Query: 53  LDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           +   + +    K L  W R+ T  YP V V N T+SW DGLA  ALIH  RPDL  +
Sbjct: 127 IMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDW 183

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
            T  YP V V N T+SW DGLA  ALIH  RPDL
Sbjct: 147 STRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 11/72 (15%), Positives = 24/72 (33%)

Query: 42  CQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHH 101
               S       + +  E +     +     +    P + + N +  W+ G A  AL+  
Sbjct: 148 ILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDS 207

Query: 102 FRPDLIFYYATF 113
             P L   + ++
Sbjct: 208 CAPGLCPDWDSW 219

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           +    P + + N +  W+ G A  AL+    P L
Sbjct: 179 IQNKLPQLPITNFSRDWQSGRALGALVDSCAPGL 212

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 68.1 bits (166), Expect = 9e-15
 Identities = 12/69 (17%), Positives = 22/69 (31%)

Query: 42  CQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHH 101
               S       D    + +     +     +    P + + N   +W+DG A  AL+  
Sbjct: 121 ILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDS 180

Query: 102 FRPDLIFYY 110
             P L   +
Sbjct: 181 CAPGLCPDW 189

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 60.0 bits (145), Expect = 8e-12
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 55  FDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFF 114
            +  +R   K + +  + + +G        +   W   L +   +  +  +         
Sbjct: 87  LEFLDRESIKLVSIDSKAIVDGNL---KLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143

Query: 115 --------VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
                   +    P + + N   +W+DG A  AL+    P L
Sbjct: 144 PKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGL 185

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 63  TKALEMWCRR-VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
            K L  W    + +G     V N ++  +D  A+  L++   P+  
Sbjct: 154 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 199

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 58.6 bits (141), Expect = 4e-11
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 104 PDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
             ++  +  F + +G     V N ++  +D  A+  L++   P+ 
Sbjct: 154 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEH 198

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 57.4 bits (138), Expect = 9e-11
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 6/88 (6%)

Query: 28  DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGT----KALEMWCRR-VTEGYPGVRV 82
           D+ +      L +  Q         L        G       +  W  R V      +++
Sbjct: 360 DIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQI 419

Query: 83  DNMT-SSWRDGLAFCALIHHFRPDLIFY 109
           ++    S   GL F  L+    P ++ +
Sbjct: 420 ESFKDKSLSSGLFFLNLLWAVEPRVVNW 447

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 115 VTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDL 148
           V      +++++    S   GL F  L+    P +
Sbjct: 410 VRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRV 444

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 64.0 bits (155), Expect = 5e-13
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 30  GERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTK--ALEMWCRRVTEGYPGVRVDNMTS 87
           G R  T AL +W     +          G +  +    +        +G  G ++ +   
Sbjct: 377 GSRTLTLAL-VWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRD 435

Query: 88  -SWRDGLAFCALIHHFRPDLI 107
            S   G+    ++H  + + +
Sbjct: 436 PSISTGVFVLDVLHGIKSEYV 456

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 46  SDPCFDTLDFDMGERRGTK-ALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFR 103
                +    D   R   +  L  W     +       V N +    DG  +  L++   
Sbjct: 145 YRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLA 204

Query: 104 PDLI 107
           P+L 
Sbjct: 205 PELC 208

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 115 VTEGYPGVRVDNMTS-SWRDGLAFCALIHHFRPDL 148
             +G  G ++ +    S   G+    ++H  + + 
Sbjct: 421 AAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEY 455

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 49.0 bits (116), Expect = 9e-08
 Identities = 7/46 (15%), Positives = 17/46 (36%)

Query: 103 RPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
              ++  +  + +        V N +    DG  +  L++   P+L
Sbjct: 162 PEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPEL 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	99.87
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	99.87
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	99.85
1wyl_A	116	NEDD9 interacting protein with calponin homology a	99.84
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	99.84
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	99.83
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.82
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	99.82
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.8
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.79
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.79
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.79
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.75
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.74
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.71
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.58
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.58
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.46
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.46
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.38
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.2
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.15
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.14
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.11
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.08
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	99.03
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.02
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	98.99
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	98.96
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.94
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	98.93
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	98.93
1wyl_A	116	NEDD9 interacting protein with calponin homology a	98.92
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	98.9
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	98.89
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	98.86
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	98.48
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	97.13
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	96.07
2qjz_A	123	Microtubule-associated protein RP/EB family member	94.47
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	94.02
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	93.7
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	93.6
2r8u_A	268	Microtubule-associated protein RP/EB family member	87.77
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	85.74
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	85.69
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	82.39
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	81.14

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=99.87  E-value=2.2e-23  Score=149.65  Aligned_cols=84  Identities=37%  Similarity=0.731  Sum_probs=68.0

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cc
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VR  123 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~  123 (149)
                      .+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++++++   |+|. ++
T Consensus         2 ~s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~   81 (109)
T 1bkr_A            2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLD   81 (109)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCC
Confidence            4689999999999999999999999999999999999999999999999987            455554   6654 46


Q ss_pred             cCCCCCcchhhhHHHHHHhh
Q psy4515         124 VDNMTSSWRDGLAFCALIHH  143 (149)
Q Consensus       124 v~nfs~sw~dgla~~ali~~  143 (149)
                      ++|+....+|..++++|+.+
T Consensus        82 ~eDv~~~~pD~ksi~tYvs~  101 (109)
T 1bkr_A           82 PEDISVDHPDEKSIITYVVT  101 (109)
T ss_dssp             HHHHSSSSCCHHHHHHHHHH
T ss_pred             HHHccCCCCcHHHHHHHHHH
Confidence            66665555555555555544

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=99.87  E-value=9e-23  Score=150.15  Aligned_cols=86  Identities=36%  Similarity=0.715  Sum_probs=71.4

Q ss_pred             cccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-
Q psy4515          58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-  121 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-  121 (149)
                      ++.+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++++++   |+|. 
T Consensus         4 ~~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~l   83 (127)
T 1wyq_A            4 GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKL   83 (127)
T ss_dssp             SCCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCC
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence            456789999999999999999999999999999999999999999999999987            455554   5544 


Q ss_pred             cccCCCCCcchhhhHHHHHHhh
Q psy4515         122 VRVDNMTSSWRDGLAFCALIHH  143 (149)
Q Consensus       122 V~v~nfs~sw~dgla~~ali~~  143 (149)
                      ++++|+....+|..++++|+.+
T Consensus        84 l~~eDv~~~~pDeksimtYvs~  105 (127)
T 1wyq_A           84 LDPEDVNVDQPDEKSIITYVAT  105 (127)
T ss_dssp             SCTTTSCSSSCCHHHHHHHHHH
T ss_pred             cCHHHhccCCCcHHHHHHHHHH
Confidence            5788887666666666666654

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=99.85  E-value=4.8e-22  Score=144.53  Aligned_cols=90  Identities=28%  Similarity=0.518  Sum_probs=68.6

Q ss_pred             ccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-c
Q psy4515          59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-V  122 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V  122 (149)
                      +.+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++.+++   |+|. +
T Consensus         6 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll   85 (118)
T 1bhd_A            6 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLL   85 (118)
T ss_dssp             CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             cCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCccc
Confidence            45688999999999999999999999999999999999999999999999986            455554   5654 4


Q ss_pred             ccCCCCC---cchhhhHHHHHHhhhCCCC
Q psy4515         123 RVDNMTS---SWRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       123 ~v~nfs~---sw~dgla~~ali~~~rP~L  148 (149)
                      +++|+..   +++.-++|++.+.+..|++
T Consensus        86 ~~eDv~~~~pD~ksvmtYvs~l~~~~~~~  114 (118)
T 1bhd_A           86 DPEDVAVRLPDKKSIIMYLTSLFEVLPQQ  114 (118)
T ss_dssp             CHHHHHTSCCCHHHHHHHHHHHHHHC---
T ss_pred             CHHHhhcCCCcHHHHHHHHHHHHHHCcCC
Confidence            5666544   4455555555555555654

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=99.84  E-value=2.2e-22  Score=145.89  Aligned_cols=89  Identities=34%  Similarity=0.615  Sum_probs=68.0

Q ss_pred             ccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-c
Q psy4515          59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-V  122 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V  122 (149)
                      ..+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++.+++   |+|. +
T Consensus         5 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL   84 (116)
T 1wyl_A            5 SSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVV   84 (116)
T ss_dssp             CSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhccCCHHHHHHHHHHHHHHHcCCcccc
Confidence            45678999999999999999999999999999999999999999999999986            345554   4444 4


Q ss_pred             ccCCCCCcchhhhHHHHHH---hhhCCCC
Q psy4515         123 RVDNMTSSWRDGLAFCALI---HHFRPDL  148 (149)
Q Consensus       123 ~v~nfs~sw~dgla~~ali---~~~rP~L  148 (149)
                      .++|+... +|..++++|+   .+..|++
T Consensus        85 ~peD~~~~-~d~ksv~tYvs~l~~~~~~~  112 (116)
T 1wyl_A           85 SAQAVVAG-SDPLGLIAYLSHFHSAFKSG  112 (116)
T ss_dssp             CHHHHHHT-SCHHHHHHHHHHHHHHSCCS
T ss_pred             CHHHHhcC-CchhHHHHHHHHHHHHccCC
Confidence            56665443 4555555555   4444543

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=99.84  E-value=6.8e-22  Score=145.69  Aligned_cols=87  Identities=36%  Similarity=0.652  Sum_probs=69.0

Q ss_pred             cccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-
Q psy4515          58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-  121 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-  121 (149)
                      ++.+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++++++   ++|. 
T Consensus         4 ~~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~l   83 (128)
T 2d87_A            4 GSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQL   83 (128)
T ss_dssp             CSCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CcCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCcc
Confidence            456789999999999999999999999999999999999999999999999986            345554   4544 


Q ss_pred             cccCCCC-CcchhhhHHHHHHhhh
Q psy4515         122 VRVDNMT-SSWRDGLAFCALIHHF  144 (149)
Q Consensus       122 V~v~nfs-~sw~dgla~~ali~~~  144 (149)
                      +.++|+. ...+|...+++|+.++
T Consensus        84 L~peD~v~~~~pD~ksvmtYvs~l  107 (128)
T 2d87_A           84 LDTEDMVRLREPDWKCVYTYIQEF  107 (128)
T ss_dssp             SCHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             cCHHHHhccCCccHHHHHHHHHHH
Confidence            5777763 3455566655555543

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.3e-21  Score=142.43  Aligned_cols=90  Identities=33%  Similarity=0.695  Sum_probs=69.3

Q ss_pred             cccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc--CCCc-c
Q psy4515          58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE--GYPG-V  122 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte--g~p~-V  122 (149)
                      ++.+++++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++.+++  |+|. +
T Consensus         6 ~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~~~~~n~~~af~~a~~LGi~~ll   85 (119)
T 2d89_A            6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLL   85 (119)
T ss_dssp             SCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTTCSHHHHHHHHHHHHHHTCCCCS
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcccCHHHHHHHHHHHHHHhCCCccc
Confidence            456789999999999999999999999999999999999999999999999987            233333  4444 4


Q ss_pred             ccCCCC----CcchhhhHHHHHHhhhCCC
Q psy4515         123 RVDNMT----SSWRDGLAFCALIHHFRPD  147 (149)
Q Consensus       123 ~v~nfs----~sw~dgla~~ali~~~rP~  147 (149)
                      .++|+.    ++++.-++|++.+.++.|+
T Consensus        86 ~peDi~~~~~pD~ksvmtYvs~l~~~f~~  114 (119)
T 2d89_A           86 EPSDMVLLAIPDKLTVMTYLYQIRAHFSS  114 (119)
T ss_dssp             CHHHHHHSSSCCHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHhccCCCcHHHHHHHHHHHHHHccC
Confidence            666664    3555555555555544443

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.82  E-value=5e-21  Score=158.29  Aligned_cols=137  Identities=26%  Similarity=0.384  Sum_probs=102.4

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccccccccchHHHHHHHHHHhhCCCCCe
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGV   80 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v   80 (149)
                      +.|||++...+.+.+-+..+  ++.+++.+++  ++|+    +.++.+..+++.   .+.+++++||.|||.++.+|+++
T Consensus       134 n~aL~~lk~~gv~lv~I~~~--DIvdGn~kliLgLlW~Li~~~~i~~i~~~g~~---~~~s~k~~LL~W~n~~~~~y~~v  208 (296)
T 3f7p_A          134 QIALDYLRHRQVKLVNIRND--DIADGNPKLTLGLIWTIILHFQISDIQVSGQS---EDMTAKEKLLLWSQRMVEGYQGL  208 (296)
T ss_dssp             HHHHHHHHHTTCCCTTCCHH--HHHTTCHHHHHHHHHHHHHHHTTTTCCCSSCC---TTSCHHHHHHHHHHHHTTTSTTC
T ss_pred             HHHHHHHHHhCccccCCChh--hhhccchHHHHHHHHHhhcccceeeeeccCCc---ccCCHHHHHHHHHHHHhcCCCCC
Confidence            67999999999998877654  5888888666  8887    344544443321   23567899999999999999999


Q ss_pred             eecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cccCCCCC---cchhhhHHHHHH
Q psy4515          81 RVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VRVDNMTS---SWRDGLAFCALI  141 (149)
Q Consensus        81 ~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~v~nfs~---sw~dgla~~ali  141 (149)
                      +|+||++||+||+|||||||+++|+++||+.            ++.+++   |+|. +.++|+..   +++.-++|++.+
T Consensus       209 ~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~~~~pDeksimtyvs~l  288 (296)
T 3f7p_A          209 RCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL  288 (296)
T ss_dssp             CCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHH
T ss_pred             cCCCccccccccHHHHHHHHHHCcCccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCCHHHhcCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999985            455553   5544 45555544   455555566666


Q ss_pred             hhhCCCC
Q psy4515         142 HHFRPDL  148 (149)
Q Consensus       142 ~~~rP~L  148 (149)
                      .+..|.|
T Consensus       289 y~~fp~l  295 (296)
T 3f7p_A          289 YDAMPRV  295 (296)
T ss_dssp             HHTCC--
T ss_pred             HHHCcCC
Confidence            6666754

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=99.82  E-value=1.2e-21  Score=142.94  Aligned_cols=89  Identities=34%  Similarity=0.642  Sum_probs=69.0

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cc
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VR  123 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~  123 (149)
                      .+.+++||+|||.++++|++++|+||++||+||+|||||||+++|++|||+.            ++.+++   |+|. +.
T Consensus         8 ~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~   87 (121)
T 2d88_A            8 VARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMT   87 (121)
T ss_dssp             CSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCC
Confidence            4567889999999999999999999999999999999999999999999986            345554   4544 46


Q ss_pred             cCCCC----CcchhhhHHHHHHhhhCCCC
Q psy4515         124 VDNMT----SSWRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       124 v~nfs----~sw~dgla~~ali~~~rP~L  148 (149)
                      ++|+.    ++++.-++|++.+.+..|++
T Consensus        88 peD~~~~~~pD~ksimtYvs~l~~~~~~~  116 (121)
T 2d88_A           88 GKEMASVGEPDKLSMVMYLTQFYEMFKDS  116 (121)
T ss_dssp             HHHHHHSSCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhccCCCcHHHHHHHHHHHHHHcccC
Confidence            66664    35555555555555555543

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.80  E-value=1.5e-20  Score=153.81  Aligned_cols=134  Identities=18%  Similarity=0.283  Sum_probs=102.1

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccc-cccccchHHHHHHHHHHhhCCCCC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDF-DMGERRGTKALEMWCRRVTEGYPG   79 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~-~~~~~~~k~~LL~W~q~~~~~y~~   79 (149)
                      +.||+++...+.+.+.+..+  ++.+++.+++  ++|+    +.++.+..+.++. ...+.+++++||+|||.+   |++
T Consensus       111 ~~aL~~lk~~gv~lvnI~~~--DIvdGn~kliLgLlW~Li~~~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~---~~~  185 (272)
T 3hoc_A          111 SVALEFLDRESIKLVSIDSK--AIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNK---LPQ  185 (272)
T ss_dssp             HHHHHHHHHTTCCCSSCCHH--HHHTTCHHHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHHH---CTT
T ss_pred             HHHHHHHHHcCCcccccccc--hhhcCCHHHHHHHHHHHHHHHhhhhhhccccccccccccCHHHHHHHHHHhh---CCC
Confidence            57999999999999887765  4888888666  7887    4556665554432 223456899999999997   578


Q ss_pred             eeecCCCcccccchhhhhhhhccCCCcc-Cccc------------hhcccc---CCC-ccccCCCCCcchhhhHHHHHHh
Q psy4515          80 VRVDNMTSSWRDGLAFCALIHHFRPDLI-FYYA------------TFFVTE---GYP-GVRVDNMTSSWRDGLAFCALIH  142 (149)
Q Consensus        80 v~v~nf~~sw~dG~a~~Alih~~rP~li-d~~~------------~~~vte---g~p-~V~v~nfs~sw~dgla~~ali~  142 (149)
                      ++|+||++||+||+|||||||+++|+++ ||+.            ++.+++   |+| -+.++|+....+|..++++|+.
T Consensus       186 ~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~~~pD~ksimtYvs  265 (272)
T 3hoc_A          186 LPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNVDKHSVMTYLS  265 (272)
T ss_dssp             SCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred             CCCCChhhcccchHHHHHHHHHhCcccccchhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCChHHHHHHHH
Confidence            9999999999999999999999999999 8875            345554   444 4578888777899999999999


Q ss_pred             hhC
Q psy4515         143 HFR  145 (149)
Q Consensus       143 ~~r  145 (149)
                      +|+
T Consensus       266 ~~~  268 (272)
T 3hoc_A          266 QFP  268 (272)
T ss_dssp             TCC
T ss_pred             Hhh
Confidence            886

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.79  E-value=1.1e-20  Score=152.69  Aligned_cols=135  Identities=28%  Similarity=0.464  Sum_probs=98.2

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCccccccccccccchHHHHHHHHHHhhCCCCCeeecC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDN   84 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v~v~n   84 (149)
                      +.||+++...+.+.+-+.  -.++.+++.+++  ++|.++...   ...++...+.+++++||.|||.++++|++++|+|
T Consensus        89 ~~aL~~~k~~gv~lv~I~--~~DIvdG~~kliLgLlW~li~~~---~i~~i~~~~~~~~~~LL~W~~~~~~~y~~v~v~n  163 (254)
T 1wku_A           89 NKALDFIASKGVKLVSIG--AEEIVDGNLKMTLGMIWTIILRF---AIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQN  163 (254)
T ss_dssp             HHHHHHHHTTTCCCCSCC--HHHHHHCCHHHHHHHHHHHHHHH---HTTTCEETTEEHHHHHHHHHHHHHTTCTTCCCCS
T ss_pred             HHHHHHHHHcCCCccCCC--HHHHhccchHHHHHHHHHHHHHH---hhcccccccccHHHHHHHHHHHHccCCCCCcCCC
Confidence            578999999999988664  455888887666  778743221   1122222356788999999999999999999999


Q ss_pred             CCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cccCCCC----CcchhhhHHHHHHhhh
Q psy4515          85 MTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VRVDNMT----SSWRDGLAFCALIHHF  144 (149)
Q Consensus        85 f~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~v~nfs----~sw~dgla~~ali~~~  144 (149)
                      |++||+||+|||||||+++|+++||+.            ++.+++   |.|. +.++|+.    ++++.-++|++.+.+.
T Consensus       164 Fs~s~~DG~a~~aLi~~~~P~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~  243 (254)
T 1wku_A          164 FHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHA  243 (254)
T ss_dssp             SSGGGTTSHHHHHHHHHHCTTSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHHHHCCCcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999976            344543   4544 4666662    3455556666655544


Q ss_pred             CC
Q psy4515         145 RP  146 (149)
Q Consensus       145 rP  146 (149)
                      .|
T Consensus       244 ~~  245 (254)
T 1wku_A          244 FA  245 (254)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.79  E-value=1.1e-19  Score=145.59  Aligned_cols=137  Identities=26%  Similarity=0.388  Sum_probs=101.7

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccccccccchHHHHHHHHHHhhCCCCCe
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGV   80 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v   80 (149)
                      +.||+++.+.+.+.+-+..+  ++.+++.+++  ++|.    +.++.+..+++.   .+.+++++||.|||.++.+|+++
T Consensus        78 ~~aL~~~k~~g~~l~~I~~~--DIvdg~~k~iLgLlw~li~~~~i~~i~~~g~~---~~~~~~~~LL~W~~~~~~~~~~~  152 (245)
T 1sh5_A           78 QIALDYLRHRQVKLVNIRND--DIADGNPKLTLGLIWTIILHFQISDIQVSGQS---EDMTAKEKLLLWSQRMVEGYQGL  152 (245)
T ss_dssp             HHHHHHHHHTTCCCCSCCHH--HHHTTCHHHHHHHHHHHHHHHTTTTCCCTTCC---SSCCHHHHHHHHHHHHTTTSTTC
T ss_pred             HHHHHHHHHcCCcccCCChH--hhhcccHHHHHHHHHHHHHhhccccccccccc---ccCCHHHHHHHHHHHHhccCCCc
Confidence            57999999999998887554  4888888666  7887    344444443321   23467899999999999999999


Q ss_pred             eecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cccCCCC---CcchhhhHHHHHH
Q psy4515          81 RVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VRVDNMT---SSWRDGLAFCALI  141 (149)
Q Consensus        81 ~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~v~nfs---~sw~dgla~~ali  141 (149)
                      +|+||++||+||+|||||||+++|+++||+.            ++.+++   |.|. +.++|+.   ++++.-++|++.+
T Consensus       153 ~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~tyva~l  232 (245)
T 1sh5_A          153 RCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL  232 (245)
T ss_dssp             CCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHH
T ss_pred             ccCCccccccchHHHHHHHHHHCCCCCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999875            334443   4443 4555554   4566666677767


Q ss_pred             hhhCCCC
Q psy4515         142 HHFRPDL  148 (149)
Q Consensus       142 ~~~rP~L  148 (149)
                      .+..|.+
T Consensus       233 ~~~~~~~  239 (245)
T 1sh5_A          233 YDAMPRV  239 (245)
T ss_dssp             HHHCC--
T ss_pred             HHHcCCC
Confidence            6666654

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.79  E-value=3.7e-20  Score=155.69  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=101.6

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccc-cccccchHHHHHHHHHHhhCCCCC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDF-DMGERRGTKALEMWCRRVTEGYPG   79 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~-~~~~~~~k~~LL~W~q~~~~~y~~   79 (149)
                      +.||+++.+.+.+.+-+..+=  +.++|.+++  ++|+    +.++.+..+.+.. ...+.+++++||+|||.++   ++
T Consensus        81 ~~al~~~~~~g~~lv~i~~~D--IvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~---~~  155 (347)
T 4b7l_A           81 SVALEFLDRESIKLVSIDSKA--IVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PY  155 (347)
T ss_dssp             HHHHHHHHHTTCCCSSCCHHH--HHTTCHHHHHHHHHHHHHHHHTTSSCCC-------CCCCHHHHHHHHHHHHC---TT
T ss_pred             HHHHHHHHHhccccCCCCcch--hhcCCHhhHHHHHHHHHHHHhhhhhhcccccchhhhhhhHHHHHHHHHHhhC---CC
Confidence            579999999999998877654  999998666  7887    4444444433322 3345678999999999986   67


Q ss_pred             eeecCCCcccccchhhhhhhhccCCCcc-Cccc------------hhcccc---CCCc-cccCCCCCcchhhhHHHHHHh
Q psy4515          80 VRVDNMTSSWRDGLAFCALIHHFRPDLI-FYYA------------TFFVTE---GYPG-VRVDNMTSSWRDGLAFCALIH  142 (149)
Q Consensus        80 v~v~nf~~sw~dG~a~~Alih~~rP~li-d~~~------------~~~vte---g~p~-V~v~nfs~sw~dgla~~ali~  142 (149)
                      ++|+||++||+||+|||||||+++|+++ ||+.            ++.+++   |+|. +.++|+....+|..++++|+.
T Consensus       156 ~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDeksimtYvs  235 (347)
T 4b7l_A          156 LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLS  235 (347)
T ss_dssp             SCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred             cccCCCCCCccchHHHHHHHHHhCCccccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCCCCCChhHHHHHHH
Confidence            8899999999999999999999999999 7875            455554   5554 467777766778888888887


Q ss_pred             hhC
Q psy4515         143 HFR  145 (149)
Q Consensus       143 ~~r  145 (149)
                      +|+
T Consensus       236 ~~~  238 (347)
T 4b7l_A          236 QFP  238 (347)
T ss_dssp             TGG
T ss_pred             HHh
Confidence            654

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.75  E-value=2.5e-19  Score=143.78  Aligned_cols=139  Identities=25%  Similarity=0.367  Sum_probs=99.5

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccC----CCccccccccccccchHHHHHHHHHHhhCCCCCe
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNS----DPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGV   80 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~----~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v   80 (149)
                      +.||+++...+.+.+-+..+-  +.+++.+++  ++|.++..    .+..+... ...+..+++.||.|||.++++|+++
T Consensus        78 ~~aL~~~k~~g~~l~~I~~~D--Ivdg~~~liL~Llw~li~~~~i~~~~~e~~~-~~~~~~~~~~LL~W~~~~~~~~~~~  154 (246)
T 1dxx_A           78 NKALRVLQNNNVDLVNIGSTD--IVDGNHKLTLGLIWNIILHWQVKNVMKNIMA-GLQQTNSEKILLSWVRQSTRNYPQV  154 (246)
T ss_dssp             HHHHHHHHHTTCCCTTCCHHH--HHTTCHHHHHHHHHHHHHHHTTTHHHHHHHH-HHTTCCHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCccccCCHHH--hhcccHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccccHHHHHHHHHHHHhccCCCC
Confidence            579999999999988776554  888888665  77874332    11111100 1123457889999999999999999


Q ss_pred             eecCCCcccccchhhhhhhhccCCCccCccc-------------hhcccc---CCCc-cccCCCC---CcchhhhHHHHH
Q psy4515          81 RVDNMTSSWRDGLAFCALIHHFRPDLIFYYA-------------TFFVTE---GYPG-VRVDNMT---SSWRDGLAFCAL  140 (149)
Q Consensus        81 ~v~nf~~sw~dG~a~~Alih~~rP~lid~~~-------------~~~vte---g~p~-V~v~nfs---~sw~dgla~~al  140 (149)
                      +|+||++||+||+|||||||+++|+++||+.             ++.+++   |.|. +.++|+.   ++++.-++|++.
T Consensus       155 ~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~pD~k~i~tyva~  234 (246)
T 1dxx_A          155 NVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITS  234 (246)
T ss_dssp             CCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHH
T ss_pred             CcCCCcccchhHHHHHHHHHHHCcCccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhhcCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999876             233333   4443 4555544   455666666666


Q ss_pred             HhhhCCCC
Q psy4515         141 IHHFRPDL  148 (149)
Q Consensus       141 i~~~rP~L  148 (149)
                      +.+.+|+.
T Consensus       235 l~~~~~~~  242 (246)
T 1dxx_A          235 LFQVLPQQ  242 (246)
T ss_dssp             HHTTSCCC
T ss_pred             HHHHccCC
Confidence            66676764

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.74  E-value=5.6e-19  Score=141.79  Aligned_cols=134  Identities=19%  Similarity=0.271  Sum_probs=100.5

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccc-cccccchHHHHHHHHHHhhCCCCC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDF-DMGERRGTKALEMWCRRVTEGYPG   79 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~-~~~~~~~k~~LL~W~q~~~~~y~~   79 (149)
                      +.||+++...+.+.+-+.  -.++.+++.+++  ++|.    +.++.+..+..+. ...+.++++.||+|||.++   ++
T Consensus        84 ~~aL~~~k~~g~~lv~I~--~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~---~~  158 (245)
T 2wa7_A           84 SVALEFLDRESIKLVSID--SKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PY  158 (245)
T ss_dssp             HHHHHHHHHTTCCCCSCC--HHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSCC----CCCCHHHHHHHHHHHHS---TT
T ss_pred             HHHHHHHHHcCCcccCCC--HHHhhCCCHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHhC---CC
Confidence            578999999999888774  455888888666  7887    3455555443321 2234567899999999986   57


Q ss_pred             eeecCCCcccccchhhhhhhhccCCCcc-Cccc------------hhcccc---CCCc-cccCCCCCcchhhhHHHHHHh
Q psy4515          80 VRVDNMTSSWRDGLAFCALIHHFRPDLI-FYYA------------TFFVTE---GYPG-VRVDNMTSSWRDGLAFCALIH  142 (149)
Q Consensus        80 v~v~nf~~sw~dG~a~~Alih~~rP~li-d~~~------------~~~vte---g~p~-V~v~nfs~sw~dgla~~ali~  142 (149)
                      ++|+||++||+||+|||||||+++|+++ ||+.            ++.+++   |.|. +.++|+....+|..++++|+.
T Consensus       159 ~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~~d~ksi~tyvs  238 (245)
T 2wa7_A          159 LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLS  238 (245)
T ss_dssp             SCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTCTTCCHHHHHHHHT
T ss_pred             CCCCCCcccchhhHHHHHHHHHHCccccccccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHH
Confidence            8999999999999999999999999999 8865            344444   4443 577777776788888888887


Q ss_pred             hhC
Q psy4515         143 HFR  145 (149)
Q Consensus       143 ~~r  145 (149)
                      +|+
T Consensus       239 ~~~  241 (245)
T 2wa7_A          239 QFP  241 (245)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.71  E-value=3.8e-18  Score=155.14  Aligned_cols=137  Identities=26%  Similarity=0.410  Sum_probs=101.2

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCccccccccccccchHHHHHHHHHHhhCCCCCeeecC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDN   84 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v~v~n   84 (149)
                      +.||+++...+.+.+-+...-  +.+++.+++  ++|+++.....   .++...+.+++++||.|||.++++|++++|+|
T Consensus        70 ~~~l~~~~~~g~~~~~i~~~d--i~~g~~~~~l~l~w~l~~~~~~---~~~~~~~~~~~~~ll~W~~~~~~~~~~~~v~n  144 (863)
T 1sjj_A           70 NKALDFIASKGVKLVSIGAEE--IVDGNVKMTLGMIWTIILRFAI---QDISVEETSAKEGLLLWYQRKTAPYKNVNIQN  144 (863)
T ss_dssp             HHHHHHHHHTTCCCTTCCSHH--HHTTCHHHHHHHHHHHHSCCCC---CCCCCCCCCSTTTTHHHHHHHHTTSTTCCCCS
T ss_pred             HHHHHHHHHcCCccCCCChHH--hhcCCHHHHHHHHHHHHHHHhh---cccchhccchHHHHHHHHHHhccCCCCCCCCC
Confidence            579999999999888776654  888888666  78875544322   22323345678899999999999999999999


Q ss_pred             CCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cccCCCC----CcchhhhHHHHHHhhh
Q psy4515          85 MTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VRVDNMT----SSWRDGLAFCALIHHF  144 (149)
Q Consensus        85 f~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~v~nfs----~sw~dgla~~ali~~~  144 (149)
                      |++||+||+|||||||+++|++|||+.            ++.+++   |+|. +.++|+.    ++.+.-++|++.+.+.
T Consensus       145 f~~s~~dg~~~~~li~~~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~  224 (863)
T 1sjj_A          145 FHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHA  224 (863)
T ss_dssp             SSGGGTTSHHHHHHHHTTCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTT
T ss_pred             CccccccHHHHHHHHHHhCCCCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999986            344443   4544 4555643    3455555555555555


Q ss_pred             CCCC
Q psy4515         145 RPDL  148 (149)
Q Consensus       145 rP~L  148 (149)
                      .|++
T Consensus       225 ~~~~  228 (863)
T 1sjj_A          225 FSGA  228 (863)
T ss_dssp             TCCC
T ss_pred             hccc
Confidence            5543

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.58  E-value=1.5e-16  Score=139.17  Aligned_cols=133  Identities=9%  Similarity=0.099  Sum_probs=89.8

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCccc-ccccc-ccccchHHHHHHHHHHhhC-CCCCee
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFD-TLDFD-MGERRGTKALEMWCRRVTE-GYPGVR   81 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~-~~~~~-~~~~~~k~~LL~W~q~~~~-~y~~v~   81 (149)
                      +.||+++...+.+.+-+..  .++.+++.+++  ++|+++- ...+. ..++. .++.-..+.||.|||++++ +|+++.
T Consensus       353 ~~al~~~~~~gv~lv~i~~--~DIvdg~~~~~LgLlW~li~-~~~~~~l~~l~~~~~~~~~~~LL~W~~~~~~~~~~~~~  429 (513)
T 1rt8_A          353 NYAVDLGKNQGFSLVGIQG--ADITDGSRTLTLALVWQMMR-MNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQ  429 (513)
T ss_dssp             HHHHHHHHHTTCCCTTCCH--HHHHTTCHHHHHHHHHHHHH-HHHHHHTTC------CCCHHHHHHHHHHHHTTTCSSCC
T ss_pred             HHHHHHHHHcCceeeccch--hhhhcCCchhhHHHHHHHHH-HHHHHHHHhhccCCCcCCHHHHHHHHHHHhhccCCCCC
Confidence            5689999999988886544  44888887665  7887542 11111 12221 1122233469999999997 589999


Q ss_pred             ecCCC-cccccchhhhhhhhccCCCccCccc----------------hhcccc--CCCc-cccCCCCCcchhhhHHHHHH
Q psy4515          82 VDNMT-SSWRDGLAFCALIHHFRPDLIFYYA----------------TFFVTE--GYPG-VRVDNMTSSWRDGLAFCALI  141 (149)
Q Consensus        82 v~nf~-~sw~dG~a~~Alih~~rP~lid~~~----------------~~~vte--g~p~-V~v~nfs~sw~dgla~~ali  141 (149)
                      |+||+ +||+||+|||||||+++|+++||+.                ++.+++  |+|. +.++|+...-  ..++++|+
T Consensus       430 i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af~~A~~lGi~~~l~peDi~~~~--pksi~tyv  507 (513)
T 1rt8_A          430 IRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVIFILPEDIVAVR--PRLVLHFI  507 (513)
T ss_dssp             CSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTC--HHHHHHHH
T ss_pred             CCCCCcccccchHHHHHHHHHhCCCcCCHHhhccccChhhHHHHHHHHHHHHHHcCCCccCCHHHhcCCC--cccHHHHH
Confidence            99999 8999999999999999999999876                233343  4443 3555544332  36677777


Q ss_pred             hhh
Q psy4515         142 HHF  144 (149)
Q Consensus       142 ~~~  144 (149)
                      ..+
T Consensus       508 a~l  510 (513)
T 1rt8_A          508 GSL  510 (513)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.58  E-value=1.3e-16  Score=139.44  Aligned_cols=133  Identities=12%  Similarity=0.163  Sum_probs=91.7

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCccccc-cc---cccccchHHHHHHHHHHhhCC-CCC
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFDTL-DF---DMGERRGTKALEMWCRRVTEG-YPG   79 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~-~~---~~~~~~~k~~LL~W~q~~~~~-y~~   79 (149)
                      +.||+++...+.+.+.+..+-  +.+++.+++  ++|+++ .....+.. +.   ..++...+++||.|||+++++ +.+
T Consensus       340 ~~aL~~~k~~~v~l~~I~~~d--Ivdg~~kl~L~Liw~li-r~~i~~~~~~l~~~~~~~~~~~~~LL~W~~~~~~~~~~~  416 (506)
T 1pxy_A          340 NQVIKIGKQLKFSLVNVAGND--IVQGNKKLILGLLWQLM-RFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRK  416 (506)
T ss_dssp             HHHHHHHHHTTCCCCSCCHHH--HHTTCHHHHHHHHHHHH-HHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHcCCcccCCCHHH--HhcCCHHHHHHHHHHHH-HHhhHHHHHHhhcccccccccHHHHHHHHHHHhhhcCCc
Confidence            378999999999988887776  888888666  788764 21111110 00   112333578999999999986 468


Q ss_pred             eeecCCC-cccccchhhhhhhhccCCCccCccch----------------hcccc--CCCc-cccCCCCCcchhhhHHHH
Q psy4515          80 VRVDNMT-SSWRDGLAFCALIHHFRPDLIFYYAT----------------FFVTE--GYPG-VRVDNMTSSWRDGLAFCA  139 (149)
Q Consensus        80 v~v~nf~-~sw~dG~a~~Alih~~rP~lid~~~~----------------~~vte--g~p~-V~v~nfs~sw~dgla~~a  139 (149)
                      +.|+||+ +||+||+|||||||+++|+++||+.+                +.+++  |+|. +.++|+..  .|..++++
T Consensus       417 ~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~a~~lGi~~~l~peDi~~--~d~ksi~t  494 (506)
T 1pxy_A          417 LQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVE--VNQKMILI  494 (506)
T ss_dssp             CCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHT--TCHHHHHH
T ss_pred             cccCCCCcccccchHHHHHHHHhhCCCeeehhhcccCCCchhHHHHHHHHHHHHHHcCCCCcCCHHHccC--CChhHHHH
Confidence            9999999 89999999999999999999998742                23333  4443 45555543  25666666


Q ss_pred             HHhhh
Q psy4515         140 LIHHF  144 (149)
Q Consensus       140 li~~~  144 (149)
                      |+.++
T Consensus       495 yv~~l  499 (506)
T 1pxy_A          495 LTASI  499 (506)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.46  E-value=3.2e-14  Score=124.48  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=93.0

Q ss_pred             chhhhhhhccCC-Ccccccccccccccccccee--eehhh----ccCCCcccc-----------ccc-cccccchHHHHH
Q psy4515           7 TKALEMWCRRAP-DPCFDTLNFDMGERRGTKAL--EMWCQ----CNSDPCFDT-----------LDF-DMGERRGTKALE   67 (149)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~w~~----~~~~~~~~~-----------~~~-~~~~~~~k~~LL   67 (149)
                      +.||+++...+. +.+.+..+-  +.+++.+.+  ++|.+    .++.+.+..           +.. ...+.++++.||
T Consensus        90 ~~~L~~~k~~g~~~l~~i~~~D--I~dg~~~liLgLiW~li~~~~l~~i~~~~~pel~~l~~~~e~~~~~~~~~~~~~LL  167 (513)
T 1rt8_A           90 NVVINSAKAMGGISITNIGAGD--ILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILL  167 (513)
T ss_dssp             HHHHHHHHHHSSCCCSSCCHHH--HHTTCHHHHHHHHHHHHHHHSSCCC----------------CHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHcCCCccCCcCHHh--hhcCCHHHHHHHHHHHHHHhhhcccccccCHHHHhhhccCCchhhhhcCCHHHHHH
Confidence            468899988887 777766554  888887655  68873    334332210           000 112356789999


Q ss_pred             HHHHHhhC--CCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc--CCCc-cccCCCCC-
Q psy4515          68 MWCRRVTE--GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE--GYPG-VRVDNMTS-  129 (149)
Q Consensus        68 ~W~q~~~~--~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte--g~p~-V~v~nfs~-  129 (149)
                      +|||.++.  +|+ +.|+||++||+||++||||+|+++|+++|++.            +++.++  |.|. +.++|+.. 
T Consensus       168 ~W~n~~l~~~g~~-~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~lgi~~~l~peDi~~~  246 (513)
T 1rt8_A          168 RWFNYHLKAANWP-RTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMVAG  246 (513)
T ss_dssp             HHHHHHHHHTTCS-CCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGCCCHHHHHHHHHHHHHTTTCCCSCCHHHHHTT
T ss_pred             HHHHHHHHhcCCC-cCcccchhhhhccHHHHHHHHHHCccccccCCCCccCHHHHHHHHHHHHHHcCCCccCCHHHhcCC
Confidence            99998863  675 89999999999999999999999999999865            334444  3443 34444432 


Q ss_pred             cchhhhHHHHHHhhhCCCC
Q psy4515         130 SWRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       130 sw~dgla~~ali~~~rP~L  148 (149)
                      +-+.-++|++.+.+.+|++
T Consensus       247 ~~k~il~yva~l~~~~~~~  265 (513)
T 1rt8_A          247 NPKLNLAFVAHLFNTHPGL  265 (513)
T ss_dssp             CHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHhhhccc
Confidence            2345556666666666664

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.46  E-value=3.5e-15  Score=121.23  Aligned_cols=131  Identities=14%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhcc----CCCccc-----------cccc-cccccchHHHHHH
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCN----SDPCFD-----------TLDF-DMGERRGTKALEM   68 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~----~~~~~~-----------~~~~-~~~~~~~k~~LL~   68 (149)
                      +.||+++...+.+.+-+..  .++.+++.+++  ++|.++-    +.+.+.           ++.. ...+.+++++||+
T Consensus        98 ~~aL~~~k~~g~~l~~I~~--~DIvdg~~~liLgLlw~li~~~~~~~I~~~~~~~l~~ll~~ge~~~~~~~~s~~~~LL~  175 (275)
T 1aoa_A           98 NLALNSASAIGCHVVNIGA--EDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLR  175 (275)
T ss_dssp             HHHHHHHHHTTCCCTTCCH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHSSCTTCC--------CHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHcCCcccCCCH--HHHHcCcHHHHHHHHHHHHHHhhhcccccccChHHHHhhccCCchhhhhccCHHHHHHH
Confidence            5789999999998887644  44888887655  7787432    212111           1110 0012367899999


Q ss_pred             HHHHhhC--CCCCeeecCCCcccccchhhhhhhhccCCC---------ccCccc------------hhcccc--CCCc-c
Q psy4515          69 WCRRVTE--GYPGVRVDNMTSSWRDGLAFCALIHHFRPD---------LIFYYA------------TFFVTE--GYPG-V  122 (149)
Q Consensus        69 W~q~~~~--~y~~v~v~nf~~sw~dG~a~~Alih~~rP~---------lid~~~------------~~~vte--g~p~-V  122 (149)
                      |||++++  +|+.  |+||++||+||+|||||||+++|+         ++|++.            ++++++  |.|. +
T Consensus       176 W~n~~l~~~g~~~--I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi~~~l  253 (275)
T 1aoa_A          176 WANFHLENSGWQK--INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFV  253 (275)
T ss_dssp             HHHHHHHHTTCCC--CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTCCCSC
T ss_pred             HHHHHHHhcCCCc--chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCCCCcC
Confidence            9999774  4544  999999999999999999999999         777764            344554  3332 3


Q ss_pred             ccCCCCCcchhhhHHHHHHhh
Q psy4515         123 RVDNMTSSWRDGLAFCALIHH  143 (149)
Q Consensus       123 ~v~nfs~sw~dgla~~ali~~  143 (149)
                      .++|+..  .+....++|+..
T Consensus       254 ~peDi~~--~~~k~i~tyva~  272 (275)
T 1aoa_A          254 TPADVVS--GNPKLNLAFVAN  272 (275)
T ss_dssp             CHHHHHT--TCHHHHHHHHHH
T ss_pred             CHHHcCC--CChhHHHHHHHH
Confidence            5555542  345666666654

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.38  E-value=2.1e-13  Score=119.04  Aligned_cols=139  Identities=18%  Similarity=0.129  Sum_probs=91.8

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccc-----------cccc-cccccchHHHHHH
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFD-----------TLDF-DMGERRGTKALEM   68 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~-----------~~~~-~~~~~~~k~~LL~   68 (149)
                      +.||+++...+.+.+.+  .-.++.+++.+++  ++|.    +.++.+.+.           ++.. ...+.++++.||+
T Consensus        82 ~~~L~~~k~~g~~~~~i--~~~Dl~dg~~~liLgLiw~li~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~~~~~~~~LL~  159 (506)
T 1pxy_A           82 TLCLNSAKAVGCSVVNI--GTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLK  159 (506)
T ss_dssp             HHHHHHHHHTTCCCTTC--CHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCCC--CHHHHhcCChHHHHHHHHHHHHHHHHHhhhhccCHHHHHhhcCCcchhhhhcCCHHHHHHH
Confidence            46889999999888877  4444666666443  6776    223322211           1110 1123567899999


Q ss_pred             HHHHhhC--CCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc--CCCc-cccCCCCCc-
Q psy4515          69 WCRRVTE--GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE--GYPG-VRVDNMTSS-  130 (149)
Q Consensus        69 W~q~~~~--~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte--g~p~-V~v~nfs~s-  130 (149)
                      |||.++.  +|+ +.|+||++||+||++||+|+|+++|+++||+.            +++.++  |.|. +.++|+... 
T Consensus       160 W~n~~l~~~g~~-~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~lGi~~~l~peDi~~~~  238 (506)
T 1pxy_A          160 WMNFHLKKGGYK-KTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGS  238 (506)
T ss_dssp             HHHHHHHHTTCC-SCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHHHTTCCCCCCHHHHHTTC
T ss_pred             HHHHHHHhcCCC-ccCccccccccchHHHHHHHHHhCccccccccCCcCCHHHHHHHHHHHHHHcCCCCcCCHHHHhcCC
Confidence            9998764  664 89999999999999999999999999999875            233343  3333 344443322 


Q ss_pred             chhhhHHHHHHhhhCCCC
Q psy4515         131 WRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       131 w~dgla~~ali~~~rP~L  148 (149)
                      -+.-++|++.+.+.+|++
T Consensus       239 ~k~v~tyva~l~~~~~~~  256 (506)
T 1pxy_A          239 STLNLAFVAQIFHERNGL  256 (506)
T ss_dssp             HHHHHHHHHHHHHHCCCC
T ss_pred             hhHHHHHHHHHhhhcCCC
Confidence            245567777777777765

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.20  E-value=1.2e-11  Score=99.55  Aligned_cols=88  Identities=33%  Similarity=0.649  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCc--------cc---------------------
Q psy4515          61 RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY--------YA---------------------  111 (149)
Q Consensus        61 ~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~--------~~---------------------  111 (149)
                      ..++++..|++..+.+. +..|+||..+.+||..+|.|+....|+.++-        ..                     
T Consensus        27 ~q~~~f~~WiN~~L~~~-~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~lv~I  105 (254)
T 1wku_A           27 QQRKTFTAWCNSHLRKA-GTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSI  105 (254)
T ss_dssp             HHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCCCSC
T ss_pred             HHHHHHHHHHHHHcccc-CCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCccCC
Confidence            45789999999998764 5678999999999999999998765554421        00                     


Q ss_pred             -------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCC
Q psy4515         112 -------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL  148 (149)
Q Consensus       112 -------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~L  148 (149)
                                                                 ++..+++|+++.|+||++||+||++||+++|+++|++
T Consensus       106 ~~~DIvdG~~kliLgLlW~li~~~~i~~i~~~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~  185 (254)
T 1wku_A          106 GAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL  185 (254)
T ss_dssp             CHHHHHHCCHHHHHHHHHHHHHHHHTTTCEETTEEHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTS
T ss_pred             CHHHHhccchHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCc
Confidence                                                       1135568999999999999999999999999999998


Q ss_pred             C
Q psy4515         149 M  149 (149)
Q Consensus       149 i  149 (149)
                      |
T Consensus       186 i  186 (254)
T 1wku_A          186 I  186 (254)
T ss_dssp             C
T ss_pred             c
Confidence            6

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.15  E-value=2e-11  Score=102.41  Aligned_cols=89  Identities=21%  Similarity=0.472  Sum_probs=70.3

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc--c--------------------------
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY--A--------------------------  111 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~--~--------------------------  111 (149)
                      .-++++..+|++.+..+. +..|+|+..+++||+.++.|+....++-++..  .                          
T Consensus        16 ~iQ~ktFt~WiN~~L~~~-~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~l   94 (347)
T 4b7l_A           16 KIQQNTFTRWCNEHLKSV-NKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKL   94 (347)
T ss_dssp             HHHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhhCcC-CCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhcccc
Confidence            447889999999998764 56899999999999999999875444333210  0                          


Q ss_pred             ---------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHH
Q psy4515         112 ---------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCAL  140 (149)
Q Consensus       112 ---------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~al  140 (149)
                                                                         +.|+...++++.|+||++||+||++||++
T Consensus        95 v~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~~~~~v~nF~~sw~DG~af~aL  174 (347)
T 4b7l_A           95 VSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGAL  174 (347)
T ss_dssp             SSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC-------CCCCHHHHHHHHHHHHCTTSCCCCSSGGGTTSHHHHHH
T ss_pred             CCCCcchhhcCCHhhHHHHHHHHHHHHhhhhhhcccccchhhhhhhHHHHHHHHHHhhCCCcccCCCCCCccchHHHHHH
Confidence                                                               11444457889999999999999999999


Q ss_pred             HhhhCCCCC
Q psy4515         141 IHHFRPDLM  149 (149)
Q Consensus       141 i~~~rP~Li  149 (149)
                      ||+++|+++
T Consensus       175 i~~~~P~~~  183 (347)
T 4b7l_A          175 VDSCAPGLC  183 (347)
T ss_dssp             HHHHSTTSS
T ss_pred             HHHhCCccc
Confidence            999999975

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=99.87  Aligned_cols=87  Identities=31%  Similarity=0.534  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------------------------
Q psy4515          62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------------------------  111 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------------------------  111 (149)
                      +++++..|++..+... +..|+|+-.+.+||..+|.|+....|+.++...                              
T Consensus        74 Qkktft~WINs~L~~~-~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~~~~~r~~kleNvn~aL~~lk~~gv~lv~I~~  152 (296)
T 3f7p_A           74 QKKTFTKWVNKHLIKA-QRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRN  152 (296)
T ss_dssp             HHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTTCCH
T ss_pred             HHHHHHHHHHHHcccC-CCCcccHHHHHhhHHHHHHHHHHhcCCcccccCCcChhhhhhhHHHHHHHHHHhCccccCCCh
Confidence            5789999999998653 457899999999999999999766555443110                              


Q ss_pred             ---------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHHhhhCC
Q psy4515         112 ---------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRP  146 (149)
Q Consensus       112 ---------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP  146 (149)
                                                                   ++..+++|+++.|+||++||+||++||++||+++|
T Consensus       153 ~DIvdGn~kliLgLlW~Li~~~~i~~i~~~g~~~~~s~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P  232 (296)
T 3f7p_A          153 DDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP  232 (296)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTTTCCCSSCCTTSCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCG
T ss_pred             hhhhccchHHHHHHHHHhhcccceeeeeccCCcccCCHHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCc
Confidence                                                         12345678899999999999999999999999999


Q ss_pred             CCC
Q psy4515         147 DLM  149 (149)
Q Consensus       147 ~Li  149 (149)
                      ++|
T Consensus       233 ~li  235 (296)
T 3f7p_A          233 LLI  235 (296)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            976

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.11  E-value=9.8e-11  Score=93.44  Aligned_cols=90  Identities=30%  Similarity=0.529  Sum_probs=70.9

Q ss_pred             cchHHHHHHHHHHhhCCC----CCeeecCCCcccccchhhhhhhhccCCCccCccc------------------------
Q psy4515          60 RRGTKALEMWCRRVTEGY----PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------------------  111 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y----~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------------------  111 (149)
                      ..+++++..|++..+...    .+..|+|+-.+.+||..+|.|+....|+.++...                        
T Consensus        11 ~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~   90 (245)
T 1sh5_A           11 RVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVK   90 (245)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccCCCCcchHHHHHhHHHHHHHHHHcCCc
Confidence            346789999999999763    2457899999999999999999765544332110                        


Q ss_pred             ---------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHH
Q psy4515         112 ---------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCAL  140 (149)
Q Consensus       112 ---------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~al  140 (149)
                                                                         +...+++|+++.|+||++||+||++||++
T Consensus        91 l~~I~~~DIvdg~~k~iLgLlw~li~~~~i~~i~~~g~~~~~~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aL  170 (245)
T 1sh5_A           91 LVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAI  170 (245)
T ss_dssp             CCSCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCTTCCSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHH
T ss_pred             ccCCChHhhhcccHHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHH
Confidence                                                               11334577889999999999999999999


Q ss_pred             HhhhCCCCC
Q psy4515         141 IHHFRPDLM  149 (149)
Q Consensus       141 i~~~rP~Li  149 (149)
                      +|+++|++|
T Consensus       171 i~~~~P~~i  179 (245)
T 1sh5_A          171 IHRHKPMLI  179 (245)
T ss_dssp             HHTTCTTTC
T ss_pred             HHHHCCCCC
Confidence            999999986

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.08  E-value=6.3e-11  Score=96.66  Aligned_cols=89  Identities=20%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc--Cc--------cc------------------
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI--FY--------YA------------------  111 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li--d~--------~~------------------  111 (149)
                      .-+++++..|++.+..+. +..|+|+..+++||..+|.|+....|.-+  .+        ..                  
T Consensus        46 ~vQkktft~WiN~~L~~~-~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~l  124 (272)
T 3hoc_A           46 KIQQNTFTRWCNEHLKCV-SKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKL  124 (272)
T ss_dssp             GHHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHhccC-CCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCcc
Confidence            346789999999998664 57899999999999999999876443332  00        00                  


Q ss_pred             ---------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHH
Q psy4515         112 ---------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCAL  140 (149)
Q Consensus       112 ---------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~al  140 (149)
                                                                         +.|+...++++.|+||++||+||++||++
T Consensus       125 vnI~~~DIvdGn~kliLgLlW~Li~~~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~~~~~~I~nFs~sw~DG~af~aL  204 (272)
T 3hoc_A          125 VSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGAL  204 (272)
T ss_dssp             SSCCHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHHHCTTSCCCCSSGGGTTSHHHHHH
T ss_pred             cccccchhhcCCHHHHHHHHHHHHHHHhhhhhhccccccccccccCHHHHHHHHHHhhCCCCCCCChhhcccchHHHHHH
Confidence                                                               01223356789999999999999999999


Q ss_pred             HhhhCCCCC
Q psy4515         141 IHHFRPDLM  149 (149)
Q Consensus       141 i~~~rP~Li  149 (149)
                      ||+++|++|
T Consensus       205 i~~~~P~li  213 (272)
T 3hoc_A          205 VDSCAPGLC  213 (272)
T ss_dssp             HHHHSTTSS
T ss_pred             HHHhCcccc
Confidence            999999986

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=99.03  E-value=6.9e-11  Score=86.46  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHhhCC-CCCeeecCCC-cccccchhhhhhhhccCCCccCcc
Q psy4515          62 GTKALEMWCRRVTEG-YPGVRVDNMT-SSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~-y~~v~v~nf~-~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      ..+.|++|||++++. +.+..|+||+ +||+||++||+|||.++|+.+||+
T Consensus         8 ~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~   58 (124)
T 1wjo_A            8 NDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYD   58 (124)
T ss_dssp             CCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHH
Confidence            468899999999975 4567899999 999999999999999999999998

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.02  E-value=1.5e-10  Score=92.51  Aligned_cols=91  Identities=33%  Similarity=0.500  Sum_probs=69.1

Q ss_pred             ccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCc-------cc--------------------
Q psy4515          59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY-------YA--------------------  111 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~-------~~--------------------  111 (149)
                      ....++++..|++........-.|+|+..+.+||..+|.|+....|.-++.       ..                    
T Consensus        14 ~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~   93 (246)
T 1dxx_A           14 EDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVN   93 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCCCCCccHHHHHHHHHHHHHHHHHcCCcccc
Confidence            345678999999998854211168999999999999999887654332221       00                    


Q ss_pred             --------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHH
Q psy4515         112 --------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALI  141 (149)
Q Consensus       112 --------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali  141 (149)
                                                                        +...+++|+++.|+||++||+||++||+++
T Consensus        94 I~~~DIvdg~~~liL~Llw~li~~~~i~~~~~e~~~~~~~~~~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi  173 (246)
T 1dxx_A           94 IGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALI  173 (246)
T ss_dssp             CCHHHHHTTCHHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHH
T ss_pred             CCHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccHHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHH
Confidence                                                              112445788999999999999999999999


Q ss_pred             hhhCCCCC
Q psy4515         142 HHFRPDLM  149 (149)
Q Consensus       142 ~~~rP~Li  149 (149)
                      |+++|+++
T Consensus       174 ~~~~P~li  181 (246)
T 1dxx_A          174 HSHRPDLF  181 (246)
T ss_dssp             HHHCGGGS
T ss_pred             HHHCcCcc
Confidence            99999875

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=98.99  E-value=1.2e-10  Score=83.11  Aligned_cols=38  Identities=58%  Similarity=1.065  Sum_probs=34.9

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..+++|++++|+||++||+||++||++||++||++|
T Consensus        12 ~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~li   49 (109)
T 1bkr_A           12 CQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI   49 (109)
T ss_dssp             HHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGC
T ss_pred             HHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCC
Confidence            34677899999999999999999999999999999986

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=98.96  E-value=1.5e-10  Score=83.71  Aligned_cols=38  Identities=47%  Similarity=0.775  Sum_probs=35.1

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..+++|++++|+||++||+||++||++||++||++|
T Consensus        17 ~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~li   54 (118)
T 1bhd_A           17 VRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF   54 (118)
T ss_dssp             HHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGS
T ss_pred             HHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcC
Confidence            44678899999999999999999999999999999986

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.94  E-value=5.2e-10  Score=101.69  Aligned_cols=89  Identities=31%  Similarity=0.648  Sum_probs=72.9

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc-c---------------------------
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY-A---------------------------  111 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~-~---------------------------  111 (149)
                      ...++++..|++....+. +..|+|+-.+.+||..+|.|+....|+-++-- .                           
T Consensus         7 ~~q~~~f~~Win~~L~~~-~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~~~   85 (863)
T 1sjj_A            7 KQQRKTFTAWCNSHLRKA-GTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVS   85 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHHHHHhccC-CCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCccCC
Confidence            346789999999997653 46789999999999999999987776655320 0                           


Q ss_pred             --------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCC
Q psy4515         112 --------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPD  147 (149)
Q Consensus       112 --------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~  147 (149)
                                                                  +...+++|+++.|+||++||+||++||++||+++|+
T Consensus        86 i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~~~~~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~  165 (863)
T 1sjj_A           86 IGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPE  165 (863)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHSCCCCCCCCCCCCCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCS
T ss_pred             CChHHhhcCCHHHHHHHHHHHHHHHhhcccchhccchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCC
Confidence                                                        113456899999999999999999999999999999


Q ss_pred             CC
Q psy4515         148 LM  149 (149)
Q Consensus       148 Li  149 (149)
                      +|
T Consensus       166 ~~  167 (863)
T 1sjj_A          166 LI  167 (863)
T ss_dssp             SS
T ss_pred             Cc
Confidence            86

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=98.93  E-value=5.7e-10  Score=89.22  Aligned_cols=89  Identities=21%  Similarity=0.439  Sum_probs=67.3

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc----------Cccc------------------
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI----------FYYA------------------  111 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li----------d~~~------------------  111 (149)
                      ..+++++..|++..+.+. +..|+|+-.+.+||..+|.|+....|..+          .+..                  
T Consensus        19 ~~q~~~f~~WiN~~L~~~-~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~l   97 (245)
T 2wa7_A           19 KIQQNTFTRWCNEHLKCV-NKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKL   97 (245)
T ss_dssp             GHHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhcccc-CCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCCcc
Confidence            346789999999998664 56789999999999999999875443322          0000                  


Q ss_pred             ---------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHH
Q psy4515         112 ---------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCAL  140 (149)
Q Consensus       112 ---------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~al  140 (149)
                                                                         +.|+...++++.|+||++||+||++||++
T Consensus        98 v~I~~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~~~~~v~nFs~s~~dG~a~~aL  177 (245)
T 2wa7_A           98 VSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGAL  177 (245)
T ss_dssp             CSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSCC----CCCCHHHHHHHHHHHHSTTSCCCCSSGGGTTSHHHHHH
T ss_pred             cCCCHHHhhCCCHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHhCCCCCCCCCcccchhhHHHHHH
Confidence                                                               00111234578999999999999999999


Q ss_pred             HhhhCCCCC
Q psy4515         141 IHHFRPDLM  149 (149)
Q Consensus       141 i~~~rP~Li  149 (149)
                      +|+++|+++
T Consensus       178 i~~~~P~~i  186 (245)
T 2wa7_A          178 VDSCAPGLC  186 (245)
T ss_dssp             HHHHSTTSS
T ss_pred             HHHHCcccc
Confidence            999999975

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=98.93  E-value=2.9e-10  Score=83.17  Aligned_cols=38  Identities=58%  Similarity=1.062  Sum_probs=34.9

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..+++|++++|+||++||+||++||++||+++|++|
T Consensus        16 ~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~li   53 (127)
T 1wyq_A           16 CQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL   53 (127)
T ss_dssp             HHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTC
T ss_pred             HHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcC
Confidence            34577899999999999999999999999999999986

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=98.92  E-value=2.5e-10  Score=82.21  Aligned_cols=38  Identities=50%  Similarity=0.983  Sum_probs=34.8

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++.++++|++++|+||++||+||++||++||++||++|
T Consensus        16 ~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~li   53 (116)
T 1wyl_A           16 CQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL   53 (116)
T ss_dssp             HHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSC
T ss_pred             HHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCC
Confidence            34567789999999999999999999999999999986

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=98.90  E-value=4.2e-10  Score=81.66  Aligned_cols=38  Identities=53%  Similarity=1.073  Sum_probs=35.3

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++.++++|+++.|+||++||+||++||++||+++|++|
T Consensus        18 ~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~li   55 (121)
T 2d88_A           18 CQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI   55 (121)
T ss_dssp             HHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTS
T ss_pred             HHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcC
Confidence            45678899999999999999999999999999999986

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=98.89  E-value=6.5e-10  Score=81.44  Aligned_cols=38  Identities=47%  Similarity=0.932  Sum_probs=35.0

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++.++++|+++.|+||++||+||++||++||++||++|
T Consensus        16 ~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~li   53 (128)
T 2d87_A           16 CRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAF   53 (128)
T ss_dssp             HHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTS
T ss_pred             HHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcC
Confidence            34678889999999999999999999999999999986

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=7.4e-10  Score=80.06  Aligned_cols=38  Identities=58%  Similarity=1.191  Sum_probs=35.1

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..+++|+++.|+||++||+||++||++||++||++|
T Consensus        18 ~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~li   55 (119)
T 2d89_A           18 CKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI   55 (119)
T ss_dssp             HHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTS
T ss_pred             HHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcC
Confidence            44678899999999999999999999999999999986

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=98.48  E-value=7.7e-08  Score=77.84  Aligned_cols=47  Identities=26%  Similarity=0.467  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHhhCCCC------Ce--eecCCCcccccchhhhhhhhccCCCccC
Q psy4515          62 GTKALEMWCRRVTEGYP------GV--RVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~------~v--~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      .++++..|++..+...+      .+  .|+||..+++||..+|.|+....|+.++
T Consensus        25 q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~   79 (275)
T 1aoa_A           25 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTID   79 (275)
T ss_dssp             HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSC
T ss_pred             HHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCC
Confidence            57899999999987643      22  4789999999999999999887776554

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=97.13  E-value=0.00019  Score=52.19  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCCccccCCCC-CcchhhhHHHHHHhhhCCCCC
Q psy4515         118 GYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       118 g~p~V~v~nfs-~sw~dgla~~ali~~~rP~Li  149 (149)
                      ....+.|+||+ ++|+||++||+++++++|+.|
T Consensus        23 ~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~v   55 (124)
T 1wjo_A           23 AGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI   55 (124)
T ss_dssp             HTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSC
T ss_pred             cCCCcccCCCCcchhhhhHHHHHHHHHHCcCcc
Confidence            34567899999 999999999999999999975

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=96.07  E-value=0.0042  Score=45.03  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCc
Q psy4515          61 RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY  109 (149)
Q Consensus        61 ~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~  109 (149)
                      .+++++..|++.+...+ ++.|+|+..+.+||..++.++....|+.+++
T Consensus        22 ~q~ktft~WiN~~L~~~-~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~   69 (131)
T 2vzc_A           22 VVKKTLITFVNKHLNKL-NLEVTELETQFADGVYLVLLMGLLEGYFVPL   69 (131)
T ss_dssp             HHHHHHHHHHHHHHGGG-TCCCCCTTTTTTTSHHHHHHHHHHTTCCCCT
T ss_pred             HHHHHHHHHHHHHHHHc-CCcccCHHHHcccHHHHHHHHHHhcCCCCCH
Confidence            35789999999998765 5789999999999999999999887776654

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=94.47  E-value=0.037  Score=39.86  Aligned_cols=76  Identities=14%  Similarity=0.283  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHhhCC-CCCeeecCCCcccccchhhhhhhhccCCCccCccch--------------------hccccCCC
Q psy4515          62 GTKALEMWCRRVTEG-YPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT--------------------FFVTEGYP  120 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~-y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~--------------------~~vteg~p  120 (149)
                      ++..||.|+++.++. |+.+      ..-+||.++|-|++...|+.|++..+                    +.......
T Consensus         6 sr~ElL~WIN~~L~~~~~ki------E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k   79 (123)
T 2qjz_A            6 SRHDMLAWINESLQLNLTKI------EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   79 (123)
T ss_dssp             CHHHHHHHHHHHHTCCCCCG------GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHCCCCchH------HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            567899999999843 3332      35789999999999999999986542                    12222234


Q ss_pred             ccccCCCCCc-chhhhHHHHHHhh
Q psy4515         121 GVRVDNMTSS-WRDGLAFCALIHH  143 (149)
Q Consensus       121 ~V~v~nfs~s-w~dgla~~ali~~  143 (149)
                      .+.|+.+..+ ..|-+-|+--++.
T Consensus        80 ~i~v~kLvkgk~qdnleflqW~k~  103 (123)
T 2qjz_A           80 IIPVDKLVKGKFQDNFEFVQWFKK  103 (123)
T ss_dssp             CCCHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHcCCchhHHHHHHHHHH
Confidence            4566665544 3555666555544

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.02  E-value=0.015  Score=41.60  Aligned_cols=47  Identities=13%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             chHHHHHHHHHHhhCCCCCe--eecCCCcccccchhhhhhhhccCCCccC
Q psy4515          61 RGTKALEMWCRRVTEGYPGV--RVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        61 ~~k~~LL~W~q~~~~~y~~v--~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      ..++++..|++..+... ++  .|+||..+.+||..+|.|+....|+-++
T Consensus        18 ~q~~~f~~WIN~~L~~~-~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~   66 (129)
T 2yrn_A           18 DQKRIYTDWANHYLAKS-GHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE   66 (129)
T ss_dssp             HHHHHHHHHHHHHHHHT-CCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHHHHHHHHhccc-CCCccchhHHHHcccHHHHHHHHHHHhcCCcc
Confidence            35689999999987543 33  4899999999999999999988777663

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.70  E-value=0.023  Score=41.21  Aligned_cols=46  Identities=15%  Similarity=0.388  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      ...|+.|++...=.+   .++|+..+|.||+.+-.|+++|.|.++|+..
T Consensus        17 ~~el~~WL~~l~Ls~---~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~   62 (127)
T 2ee7_A           17 LHQLYLWVDNIPLSR---PKRNLSRDFSDGVLVAEVIKFYFPKMVEMHN   62 (127)
T ss_dssp             HHHHHHHHHHSCCSC---CSSCHHHHHTTSHHHHHHHHHHCTTTCCCSS
T ss_pred             HHHHHHHHHcCCCCC---CCCchhhhccchhHHHHHHHHHCcCcccccc
Confidence            467999999544333   4788899999999999999999999997654

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.60  E-value=0.064  Score=40.33  Aligned_cols=77  Identities=14%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHhhCC-CCCeeecCCCcccccchhhhhhhhccCCCccCccch--------------------hccccCCC
Q psy4515          62 GTKALEMWCRRVTEG-YPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT--------------------FFVTEGYP  120 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~-y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~--------------------~~vteg~p  120 (149)
                      ++..||.|+++.+.. |+.+      ..-+||.++|-|++...|+.|++..+                    +.......
T Consensus        23 sr~ElL~WIN~~L~~~~~ki------E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k   96 (159)
T 1wyo_A           23 SRHDMLAWVNDSLHLNYTKI------EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK   96 (159)
T ss_dssp             CHHHHHHHHHHHSCCCCSSG------GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHCCCCchh------hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            567899999999843 3322      35789999999999999998875431                    11122224


Q ss_pred             ccccCCCCCc-chhhhHHHHHHhhh
Q psy4515         121 GVRVDNMTSS-WRDGLAFCALIHHF  144 (149)
Q Consensus       121 ~V~v~nfs~s-w~dgla~~ali~~~  144 (149)
                      .+.|+.+..+ ..|-+-|+--++.|
T Consensus        97 ~ipV~kLvkgk~qdNlEFlqWfk~f  121 (159)
T 1wyo_A           97 IIPVEKLVKGKFQDNFEFIQWFKKF  121 (159)
T ss_dssp             CCCHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             ccCHHHHhcCCchhHHHHHHHHHHH
Confidence            4566665544 45666666655543

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=87.77  E-value=0.51  Score=38.14  Aligned_cols=77  Identities=14%  Similarity=0.297  Sum_probs=51.0

Q ss_pred             chHHHHHHHHHHhhCC-CCCeeecCCCcccccchhhhhhhhccCCCccCccch--------------------hccccCC
Q psy4515          61 RGTKALEMWCRRVTEG-YPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT--------------------FFVTEGY  119 (149)
Q Consensus        61 ~~k~~LL~W~q~~~~~-y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~--------------------~~vteg~  119 (149)
                      -++..||.|++..+.. |.  .|.    .-.+|-|+|-+++...|+.|++..+                    |......
T Consensus        15 ~sR~elL~WiN~~L~~~~~--kiE----el~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~   88 (268)
T 2r8u_A           15 LSRHDMLAWINESLQLNLT--KIE----QLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVD   88 (268)
T ss_dssp             CCHHHHHHHHHHHHTCCCC--CGG----GGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHHHHhcCCcc--hHH----HcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            3568899999998854 22  233    3566999999999999999987762                    2222233


Q ss_pred             CccccCCCCCc-chhhhHHHHHHhh
Q psy4515         120 PGVRVDNMTSS-WRDGLAFCALIHH  143 (149)
Q Consensus       120 p~V~v~nfs~s-w~dgla~~ali~~  143 (149)
                      ..+.|+.+..+ ..|-+-|+--++.
T Consensus        89 k~ipV~kLvkgk~qDNlEFlqWfkk  113 (268)
T 2r8u_A           89 KIIPVDKLVKGKFQDNFEFVQWFKK  113 (268)
T ss_dssp             CCCCHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CccCHHHHhccCchhHHHHHHHHHH
Confidence            45666665554 4566666655544

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=85.74  E-value=0.56  Score=33.79  Aligned_cols=42  Identities=24%  Similarity=0.597  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc
Q psy4515          63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI  107 (149)
Q Consensus        63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li  107 (149)
                      ++.+..|....+..-  + -.+|....+||..+|-|+.+..|+.+
T Consensus        19 ~~e~~~WIe~~l~~~--~-~~~l~~~L~DGvvLCkL~N~l~P~~v   60 (136)
T 1wyp_A           19 EQELREWIEGVTGRR--I-GNNFMDGLKDGIILCEFINKLQPGSV   60 (136)
T ss_dssp             HHHHHHHHHHHTCCC--C-CSCTTHHHHTSHHHHHHHHHHSTTSS
T ss_pred             HHHHHHHHHHHhCCC--C-cHHHHHHHccHHhHHHHHHhhCCCCc
Confidence            467999999998653  2 26888999999999999999999877

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=85.69  E-value=0.26  Score=34.09  Aligned_cols=42  Identities=26%  Similarity=0.615  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccC
Q psy4515          64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        64 ~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      +.+..|....+..-  + -.+|....+||..+|-|+.+.+|+.++
T Consensus         6 ~e~~~WIe~~l~~~--~-~~~l~~~L~dGvvLCkL~N~l~P~~v~   47 (108)
T 1h67_A            6 RQLRVWIEGATGRR--I-GDNFMDGLKDGVILCELINKLQPGSVQ   47 (108)
T ss_dssp             HHHHHHHHHHHSCC--C-CSCHHHHHHHCSHHHHHHHHHSTTSST
T ss_pred             HHHHHHHHHHhCCC--C-cHHHHHHHccHHHHHHHHHHhCCCCcc
Confidence            56889999998653  2 257888999999999999999998874

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=82.39  E-value=0.69  Score=33.64  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhhCCCCC---eeecCCCcccccchhhhhhhhccCC---CccC
Q psy4515          63 TKALEMWCRRVTEGYPG---VRVDNMTSSWRDGLAFCALIHHFRP---DLIF  108 (149)
Q Consensus        63 k~~LL~W~q~~~~~y~~---v~v~nf~~sw~dG~a~~Alih~~rP---~lid  108 (149)
                      ++.+..|....+...-.   -.-.+|....+||..+|-|+.+.+|   +.|+
T Consensus        11 e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~   62 (144)
T 1ujo_A           11 EERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK   62 (144)
T ss_dssp             HHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSC
T ss_pred             HHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcc
Confidence            46799999998864211   1235788899999999999999999   6665

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=81.14  E-value=0.69  Score=33.75  Aligned_cols=42  Identities=19%  Similarity=0.495  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc
Q psy4515          63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI  107 (149)
Q Consensus        63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li  107 (149)
                      .+.+..|....+..-  + -.+|....+||.++|-|+.+..|+.+
T Consensus        19 ~~e~~~WIe~~l~~~--i-~~~l~~~L~DGvvLCkL~N~l~P~~v   60 (146)
T 1wyn_A           19 EAELRTWIEGLTGLS--I-GPDFQKGLKDGTILCTLMNKLQPGSV   60 (146)
T ss_dssp             HHHHHHHHHHHHCCC--C-CSCHHHHHHTTSHHHHHHHHHCTTSC
T ss_pred             HHHHHHHHHHHhCCC--C-cHHHHHHHccHHHHHHHHHHhCCCCc
Confidence            467999999999642  2 26788899999999999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1bhda_	108	a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI	1e-20
d1bhda_	108	a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI	2e-14
d1bkra_	108	a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens)	3e-20
d1bkra_	108	a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens)	1e-13
d1dxxa2	127	a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie	4e-20
d1dxxa2	127	a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie	4e-14
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	5e-18
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	3e-12
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-16
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-12
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	6e-12
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-07
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	3e-14
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	4e-13
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	5e-10
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	6e-10
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	2e-12
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	8e-08
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	3e-07
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-05

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (195), Expect = 1e-20
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           K L  W R+ T  Y  V V N T+SW DGLAF A++H  +PDL  +
Sbjct: 8   KILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW 53

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
            T  Y  V V N T+SW DGLAF A++H  +PDL 
Sbjct: 17  TTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF 51

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 3e-20
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
            AL +WC+  T GYP V + N T+SWRDG+AF ALIH  RPDLI +
Sbjct: 5   DALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDF 50

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
            T GYP V + N T+SWRDG+AF ALIH  RPDL+
Sbjct: 14  KTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (193), Expect = 4e-20
 Identities = 25/49 (51%), Positives = 29/49 (59%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT 112
           K L  W R+ T  YP V V N T+SW DGLA  ALIH  RPDL  + + 
Sbjct: 19  KILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV 67

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 4e-14
 Identities = 21/36 (58%), Positives = 22/36 (61%)

Query: 114 FVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
             T  YP V V N T+SW DGLA  ALIH  RPDL 
Sbjct: 27  QSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLF 62

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 5e-18
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           + L +W +R+ EGY G+R DN T+SWRDG  F A+IH  +P LI
Sbjct: 9   EKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 52

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 3e-12
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
           + EGY G+R DN T+SWRDG  F A+IH  +P L+
Sbjct: 18  MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 52

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 73.2 bits (179), Expect = 1e-16
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 28  DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGT---KALEMWCRRVTEGYPGVRVDN 84
           D+ +   T  L +  Q        TL       +       +        +G  G ++ +
Sbjct: 365 DITDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRS 424

Query: 85  M-TSSWRDGLAFCALIHHFRPDLIFY 109
               S   G+    ++H  + + + Y
Sbjct: 425 FRDPSISTGVFVLDVLHGIKSEYVDY 450

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 61.6 bits (149), Expect = 1e-12
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 64  KALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
           K L  W     +       V N +    DG  +  L++   P+L   
Sbjct: 156 KILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR 202

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 115 VTEGYPGVRVDNM-TSSWRDGLAFCALIHHFRPDLM 149
             +G  G ++ +    S   G+    ++H  + + +
Sbjct: 413 AAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYV 448

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 115 VTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
             +       V N +    DG  +  L++   P+L 
Sbjct: 165 HLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELC 200

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 66.6 bits (162), Expect = 3e-14
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 28  DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRG----TKALEMWCRRVTEGY-PGVRV 82
           D+ +      L +  Q         L        G       +  W  R        +++
Sbjct: 354 DIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQI 413

Query: 83  DNMTS-SWRDGLAFCALIHHFRPDLIFY 109
           ++    S   GL F  L+    P ++ +
Sbjct: 414 ESFKDKSLSSGLFFLNLLWAVEPRVVNW 441

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 64  KALEMWCRRVT-EGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
           K L  W      +G     V N ++  +D  A+  L++   P+  
Sbjct: 149 KVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 193

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.2 bits (130), Expect = 5e-10
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
           + +G     V N ++  +D  A+  L++   P+ 
Sbjct: 159 LKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEH 192

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 115 VTEGYPGVRVDNMTS-SWRDGLAFCALIHHFRPDL 148
           V      +++++    S   GL F  L+    P +
Sbjct: 404 VRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRV 438

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 2e-12
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 64  KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
           + L  W     E     +++N ++  +D  A+  L++   P      
Sbjct: 12  ELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 58

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 8e-08
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
            E     +++N ++  +D  A+  L++   P   
Sbjct: 22  LENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ 55

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 64  KALEMWC-RRVTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLIFYY 110
             +  W  R ++E      + +    +    LA   LI   +P  I Y 
Sbjct: 10  DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYD 58

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 115 VTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLM 149
           ++E      + +    +    LA   LI   +P  +
Sbjct: 20  LSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	99.87
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.71
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.7
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.5
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.47
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.1
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	99.0
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.75
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.08
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	96.39
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.25
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.0
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	94.53
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	92.09
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	89.83
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	88.52

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-23  Score=148.64  Aligned_cols=87  Identities=32%  Similarity=0.603  Sum_probs=73.4

Q ss_pred             ccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-c
Q psy4515          59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-V  122 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V  122 (149)
                      +.+++++||.|||+++.+|++|+|+||++||+||+|||||||+++|+++||+.            ++.+++   |+|. +
T Consensus         4 ~~s~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll   83 (110)
T d1sh5a2           4 DMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLL   83 (110)
T ss_dssp             SCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             ccCHHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcCccCHHHHHHHHHHHHHHcCCCCCCC
Confidence            46789999999999999999999999999999999999999999999999876            344453   5654 5


Q ss_pred             ccCCCCCcchhhhHHHHHHhhhC
Q psy4515         123 RVDNMTSSWRDGLAFCALIHHFR  145 (149)
Q Consensus       123 ~v~nfs~sw~dgla~~ali~~~r  145 (149)
                      .++|+....+|.+++++|+..++
T Consensus        84 ~~eD~~~~~pD~~sv~~Yvs~ly  106 (110)
T d1sh5a2          84 DPEDVDVPQPDEKSIITYVSSLY  106 (110)
T ss_dssp             CHHHHSSSSCCHHHHHHHHHHHH
T ss_pred             CHHHHccCCCcHHHHHHHHHHHH
Confidence            77788777778888877776653

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.3e-23  Score=145.11  Aligned_cols=85  Identities=36%  Similarity=0.742  Sum_probs=70.1

Q ss_pred             cchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCc-cc
Q psy4515          60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPG-VR  123 (149)
Q Consensus        60 ~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~-V~  123 (149)
                      +++|++||.|||.++++|++++|+||++||+||+|||||||+++|++++++.            ++..++   ++|. +.
T Consensus         1 ~s~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~~~~~~~~~~a~~~ae~~lgip~ll~   80 (108)
T d1bkra_           1 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLD   80 (108)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CCHHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHHhcccCCHHHHHHHHHHHHHHhcCCCCcCC
Confidence            4689999999999999999999999999999999999999999999999876            344443   5555 46


Q ss_pred             cCCCCCcchhhhHHHHHHhhh
Q psy4515         124 VDNMTSSWRDGLAFCALIHHF  144 (149)
Q Consensus       124 v~nfs~sw~dgla~~ali~~~  144 (149)
                      ++|+...-+|.+++++|+.++
T Consensus        81 ~ed~~~~~pD~~si~~Yvs~~  101 (108)
T d1bkra_          81 PEDISVDHPDEKSIITYVVTY  101 (108)
T ss_dssp             HHHHSSSSCCHHHHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHH
Confidence            777776667777777777554

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.6e-23  Score=144.49  Aligned_cols=87  Identities=29%  Similarity=0.510  Sum_probs=74.3

Q ss_pred             ccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCCcc-
Q psy4515          59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYPGV-  122 (149)
Q Consensus        59 ~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p~V-  122 (149)
                      +.++++.||+|||.++++|++++|+||++||+||+|||||||+++|++++++.            +++.++   |+|.+ 
T Consensus         3 ~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~~~~~~~~~~~af~~a~~~lgip~ll   82 (108)
T d1bhda_           3 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLL   82 (108)
T ss_dssp             CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             ccCHHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccChhhcCcCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            46789999999999999999999999999999999999999999999999876            344443   66554 


Q ss_pred             ccCCCCCcchhhhHHHHHHhhhC
Q psy4515         123 RVDNMTSSWRDGLAFCALIHHFR  145 (149)
Q Consensus       123 ~v~nfs~sw~dgla~~ali~~~r  145 (149)
                      .++|+....+|.+++++|+..++
T Consensus        83 ~~~D~~~~~pD~~si~~Yvs~~y  105 (108)
T d1bhda_          83 DPEDVAVRLPDKKSIIMYLTSLF  105 (108)
T ss_dssp             CHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CHHHhccCCCcHHHHHHHHHHHH
Confidence            67888777789999999888764

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-22  Score=146.50  Aligned_cols=88  Identities=33%  Similarity=0.582  Sum_probs=71.8

Q ss_pred             cccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc-------------hhcccc---CCCc
Q psy4515          58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA-------------TFFVTE---GYPG  121 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~-------------~~~vte---g~p~  121 (149)
                      .+.++++.||.|||.++++|++++|+||++||+||+|||||||+++|+++|+.+             ++..++   |+|.
T Consensus        13 ~~~~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~~~l~~~~~~~~~~~a~~~Ae~~lgip~   92 (127)
T d1dxxa2          13 QQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEK   92 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred             hccCHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccchhhcCcCCHHHHHHHHHHHHHHhCCCCC
Confidence            345678999999999999999999999999999999999999999999999864             234443   4544


Q ss_pred             -cccCCCCCcchhhhHHHHHHhhhC
Q psy4515         122 -VRVDNMTSSWRDGLAFCALIHHFR  145 (149)
Q Consensus       122 -V~v~nfs~sw~dgla~~ali~~~r  145 (149)
                       +.++|+....+|.+++++|+..++
T Consensus        93 ll~~~d~~~~~pD~ksi~~Yvs~l~  117 (127)
T d1dxxa2          93 LLDPEDVDTTYPDKKSILMYITSLF  117 (127)
T ss_dssp             CCCHHHHSSSSCCHHHHHHHHHHHH
T ss_pred             cCCHHHhccCCCcHHHHHHHHHHHH
Confidence             477777777788888777776543

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=2e-18  Score=148.80  Aligned_cols=103  Identities=11%  Similarity=0.010  Sum_probs=76.1

Q ss_pred             chhhhhhhc-cCCCcccccccccccccccccee--eehhhc----cCCCcccc-----------ccc-cccccchHHHHH
Q psy4515           7 TKALEMWCR-RAPDPCFDTLNFDMGERRGTKAL--EMWCQC----NSDPCFDT-----------LDF-DMGERRGTKALE   67 (149)
Q Consensus         7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~----~~~~~~~~-----------~~~-~~~~~~~k~~LL   67 (149)
                      ++||.|+.. .+.+.+.+..+  .+.+++.+++  ++|+++    ++.+....           ... ...+.+++++||
T Consensus        82 ~~aL~~~k~~~~~~~~nI~~~--dI~dg~~~liLgLlW~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL  159 (505)
T d1rt8a_          82 NVVINSAKAMGGISITNIGAG--DILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILL  159 (505)
T ss_dssp             HHHHHHHHHHSSCCCSSCCHH--HHHTTCHHHHHHHHHHHHHHHSSCCC----------------CHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCceeeccCcc--cccccchhhhhhhHHHHHHHHHHhhhccccchhhhccccccccccccccCCHHHHHH
Confidence            468888875 57888777655  4888888666  788733    33222110           011 223456789999


Q ss_pred             HHHHHhhCCC-CCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          68 MWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        68 ~W~q~~~~~y-~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      .|||.++++| .++.|+||++||+||+|||+|+|+++|++++++.
T Consensus       160 ~W~~~~~~~~~~~~~v~nf~~~~~dG~a~~~Li~~~~P~l~~~~~  204 (505)
T d1rt8a_         160 RWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAP  204 (505)
T ss_dssp             HHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGG
T ss_pred             HHHHHHhhhcCCCceeccCCccccccHHHHHHHHHHCcCccChhh
Confidence            9999999776 3789999999999999999999999999999865

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=2.6e-18  Score=148.24  Aligned_cols=103  Identities=14%  Similarity=0.009  Sum_probs=78.9

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhh----ccCCCccc-----------cccc-cccccchHHHHHH
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQ----CNSDPCFD-----------TLDF-DMGERRGTKALEM   68 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~----~~~~~~~~-----------~~~~-~~~~~~~k~~LL~   68 (149)
                      +.||+|+...+.+.+.+.++=  +++++.+++  ++|++    .++.+...           .++. +..+.++++.||+
T Consensus        76 ~~aL~~~k~~gi~lvnI~~~d--IvdGn~~liLgLlW~ii~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL~  153 (500)
T d1pxya_          76 TLCLNSAKAVGCSVVNIGTQD--LAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLK  153 (500)
T ss_dssp             HHHHHHHHHTTCCCTTCCHHH--HHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHH
T ss_pred             HHHHHHHHHcCCEEeccChhh--hhcCCHHHHHHHHHHHHHHHHHhhhccccCcchhccccCCccchhhccCCHHHHHHH
Confidence            679999999999999887765  999888666  88873    22222211           1111 2334567899999


Q ss_pred             HHHHhhC-CCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515          69 WCRRVTE-GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        69 W~q~~~~-~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      |||.++. .+.++.|+||++||+||.+||+|||+++|++++++.
T Consensus       154 W~n~~l~~~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~  197 (500)
T d1pxya_         154 WMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPAT  197 (500)
T ss_dssp             HHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGG
T ss_pred             HHHHhccccCCCceeecCcCCchhHHHHHHHHHHHCCCccChhh
Confidence            9998874 456899999999999999999999999999998864

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=5.9e-16  Score=133.31  Aligned_cols=103  Identities=11%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCc--ccc-ccccccccchHHHHHHHHHHhhCCC-CCe
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPC--FDT-LDFDMGERRGTKALEMWCRRVTEGY-PGV   80 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~--~~~-~~~~~~~~~~k~~LL~W~q~~~~~y-~~v   80 (149)
                      +.||+++...+.+++-+..  +++.+++.+++  ++|+++..+..  +.. ......+..+++.||.|||.++++| +++
T Consensus       334 ~~al~~~~~~gi~l~~I~~--~DI~dG~~k~iLgLlW~Li~~~~i~~~~~~~~~~~~~~~~~~~LL~W~~~~~~~~~~~~  411 (500)
T d1pxya_         334 NQVIKIGKQLKFSLVNVAG--NDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKL  411 (500)
T ss_dssp             HHHHHHHHHTTCCCCSCCH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHcCCccCCCCh--HHhhccchhhHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHhcCCCC
Confidence            5799999999999987765  45888888766  77874433211  111 1111233456889999999999988 689


Q ss_pred             eecCCC-cccccchhhhhhhhccCCCccCccc
Q psy4515          81 RVDNMT-SSWRDGLAFCALIHHFRPDLIFYYA  111 (149)
Q Consensus        81 ~v~nf~-~sw~dG~a~~Alih~~rP~lid~~~  111 (149)
                      .|+||+ +||+||+|||+|||+++|++|||+.
T Consensus       412 ~I~nF~~~s~~dG~a~~~Li~~~~P~~id~~~  443 (500)
T d1pxya_         412 QIESFKDKSLSSGLFFLNLLWAVEPRVVNWNL  443 (500)
T ss_dssp             CCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTS
T ss_pred             ccCcCCCCCccccHHHHHHHHhhCCCccCHhh
Confidence            999996 7999999999999999999999875

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=2.4e-15  Score=129.32  Aligned_cols=132  Identities=9%  Similarity=0.102  Sum_probs=92.0

Q ss_pred             chhhhhhhccCCCcccccccccccccccccee--eehhhccCCCccc-cccc-cccccchHHHHHHHHHHhhC-CCCCee
Q psy4515           7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFD-TLDF-DMGERRGTKALEMWCRRVTE-GYPGVR   81 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~-~~~~-~~~~~~~k~~LL~W~q~~~~-~y~~v~   81 (149)
                      +.||+++.....+.+.+...=  +++++.+++  ++|.+...+ .+. ..+. ......+++.||.||+.+++ .|++++
T Consensus       345 ~~al~~~~~~~i~lv~I~~~d--IvdGn~kliLgllW~l~~~~-~~~~~~~~~~~~~~~~~~~lL~Wv~~~~~~~~~~~~  421 (505)
T d1rt8a_         345 NYAVDLGKNQGFSLVGIQGAD--ITDGSRTLTLALVWQMMRMN-ITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQ  421 (505)
T ss_dssp             HHHHHHHHHTTCCCTTCCHHH--HHTTCHHHHHHHHHHHHHHH-HHHHTTC------CCCHHHHHHHHHHHHTTTCSSCC
T ss_pred             HHHHHHHHHhCcccccCChHh--hhhcChHhHHHHHHHHHHHH-HHhhhhhcccccchhHHHHHHHHHHHHhhccCCCce
Confidence            679999999999888776654  889888766  666543221 111 1111 12234568899999998875 478999


Q ss_pred             ecCC-CcccccchhhhhhhhccCCCccCccc----------------hhcccc--CCCc-cccCCCCCcchhhhHHHHHH
Q psy4515          82 VDNM-TSSWRDGLAFCALIHHFRPDLIFYYA----------------TFFVTE--GYPG-VRVDNMTSSWRDGLAFCALI  141 (149)
Q Consensus        82 v~nf-~~sw~dG~a~~Alih~~rP~lid~~~----------------~~~vte--g~p~-V~v~nfs~sw~dgla~~ali  141 (149)
                      |+|| ++||+||+|||||||+++|++|||+.                ++..++  |.|. +.++|+..  .++.++++|+
T Consensus       422 I~nF~~~s~~DG~a~~~Li~~~~P~~i~~~~~~~~~~~e~~~~n~~~a~~~A~~lgi~~ll~peDi~~--~~~ksimtyv  499 (505)
T d1rt8a_         422 IRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVIFILPEDIVA--VRPRLVLHFI  499 (505)
T ss_dssp             CSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHT--TCHHHHHHHH
T ss_pred             eeeCCCCCCcccHHHHHHHHHHCCCCcCHHHhcCCCChhhHHHHHHHHHHHHHHcCCCccCCHHHcCC--CCcchhHHhh
Confidence            9999 67999999999999999999999875                233333  4443 35555432  4667888887


Q ss_pred             hh
Q psy4515         142 HH  143 (149)
Q Consensus       142 ~~  143 (149)
                      ..
T Consensus       500 ss  501 (505)
T d1rt8a_         500 GS  501 (505)
T ss_dssp             HH
T ss_pred             hH
Confidence            54

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-11  Score=85.87  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=47.3

Q ss_pred             cccchHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc
Q psy4515          58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      .+.++++.||+||+.++.+++.+.|+||++||+||.++|+||+.+.|+.+++.
T Consensus         6 ~k~~~E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~   58 (116)
T d1aoaa2           6 MKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG   58 (116)
T ss_dssp             HTSCHHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSS
T ss_pred             hcCCHHHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCccccccc
Confidence            35567899999999999888778999999999999999999999999988643

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.2e-11  Score=82.67  Aligned_cols=38  Identities=50%  Similarity=0.929  Sum_probs=35.2

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      +++++++|++|+|+||++||+||++||++||+|+|+++
T Consensus        15 ~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~i   52 (110)
T d1sh5a2          15 SQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI   52 (110)
T ss_dssp             HHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTC
T ss_pred             HHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccC
Confidence            45678899999999999999999999999999999986

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-10  Score=80.33  Aligned_cols=38  Identities=58%  Similarity=1.065  Sum_probs=35.0

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++.++++|+++.|+||++||+||++||++||+++|+++
T Consensus        11 ~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~   48 (108)
T d1bkra_          11 CQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI   48 (108)
T ss_dssp             HHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGC
T ss_pred             HHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcc
Confidence            44677899999999999999999999999999999975

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.6e-10  Score=82.75  Aligned_cols=38  Identities=55%  Similarity=0.845  Sum_probs=35.0

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++..+++|++++|+||++||+||++||+++|+|+|+++
T Consensus        25 ~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li   62 (127)
T d1dxxa2          25 VRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLF   62 (127)
T ss_dssp             HHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGS
T ss_pred             HHHHhccCCCccccCCccccccHHHHHHHHHHHCcccc
Confidence            44678899999999999999999999999999999975

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.6e-10  Score=79.35  Aligned_cols=38  Identities=47%  Similarity=0.775  Sum_probs=35.0

Q ss_pred             hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      ++.++++|++++|+||++||+||++||+++|+++|+++
T Consensus        14 ~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i   51 (108)
T d1bhda_          14 VRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF   51 (108)
T ss_dssp             HHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGS
T ss_pred             HHHHhccCCCcCcccCccccccchHHHHHHHHHCcccc
Confidence            44678899999999999999999999999999999975

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.3e-09  Score=77.20  Aligned_cols=53  Identities=21%  Similarity=0.363  Sum_probs=45.6

Q ss_pred             cccchHHHHHHHHHHhh-CCCCCeeecCCC-cccccchhhhhhhhccCCCccCcc
Q psy4515          58 GERRGTKALEMWCRRVT-EGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        58 ~~~~~k~~LL~W~q~~~-~~y~~v~v~nf~-~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      ++....+.||.||+.+. ..+....|+||+ ++|+||++||+|||.+.|+.+|++
T Consensus         4 ~~~~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~   58 (124)
T d1wjoa_           4 GSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYD   58 (124)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTT
T ss_pred             CccchHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHH
Confidence            34556789999999886 445688999998 799999999999999999999875

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0001  Score=50.03  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             CCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515         118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       118 g~p~V~v~nfs~sw~dgla~~ali~~~rP~Li  149 (149)
                      .++.+.|+||..||+||+++|++++.+.|+.+
T Consensus        24 ~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~   55 (116)
T d1aoaa2          24 NSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ   55 (116)
T ss_dssp             HTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSC
T ss_pred             cCCCceeeeccccccccHHHHHHHHHHCcccc
Confidence            34567899999999999999999999999864

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00019  Score=48.67  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc
Q psy4515          62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      ++++..+|++.+...-+...++||..+++||.++|.|+....|+.++..
T Consensus         9 Q~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~~   57 (111)
T d1dxxa1           9 QKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE   57 (111)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCCC
Confidence            5789999999988543445789999999999999999998887766543

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0011  Score=45.31  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHhhCCC----CCeeecCCCcccccchhhhhhhhccCCCccCcc
Q psy4515          62 GTKALEMWCRRVTEGY----PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY  110 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y----~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~  110 (149)
                      +++++.+|++.+...-    ++..|+||..+++||.++|.|+....|+.++..
T Consensus         6 Q~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~~~   58 (120)
T d1sh5a1           6 QKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE   58 (120)
T ss_dssp             HHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC
T ss_pred             HHHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCccccC
Confidence            5689999999988653    345699999999999999999998888777644

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00092  Score=46.11  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             ccCCCccccCCCC-CcchhhhHHHHHHhhhCCCCC
Q psy4515         116 TEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLM  149 (149)
Q Consensus       116 teg~p~V~v~nfs-~sw~dgla~~ali~~~rP~Li  149 (149)
                      .+....+.++||+ ++|+||++||++++++.|+.|
T Consensus        21 ~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i   55 (124)
T d1wjoa_          21 SEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI   55 (124)
T ss_dssp             HHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSC
T ss_pred             HHcCCCCCcCcCCccccccHHHHHHHHHHHHhccC
Confidence            4456778999998 799999999999999999764

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0011  Score=46.20  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHhhCCCCC--------eeecCCCcccccchhhhhhhhccCCCccCc
Q psy4515          62 GTKALEMWCRRVTEGYPG--------VRVDNMTSSWRDGLAFCALIHHFRPDLIFY  109 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~--------v~v~nf~~sw~dG~a~~Alih~~rP~lid~  109 (149)
                      .++++..|++.+....+.        ..|+||..+++||.++|.|+....|..++.
T Consensus         5 ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~   60 (131)
T d1aoaa1           5 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDE   60 (131)
T ss_dssp             HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCG
T ss_pred             HHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcc
Confidence            578899999998876433        258999999999999999999999988764

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.017  Score=39.87  Aligned_cols=77  Identities=14%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccch--------------------hccccCCCc
Q psy4515          62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT--------------------FFVTEGYPG  121 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~--------------------~~vteg~p~  121 (149)
                      ++..||.|++..++.. =-.|.    .-.+|-|+|.|++...|+.|++..+                    +......+.
T Consensus         4 SR~eLL~WiN~~L~~~-~~kiE----el~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k~   78 (120)
T d2qjza1           4 SRHDMLAWINESLQLN-LTKIE----QLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI   78 (120)
T ss_dssp             CHHHHHHHHHHHHTCC-CCCGG----GGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHHHHhCCC-hhhHH----HhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3567999999998531 11233    3566999999999999999988763                    222223345


Q ss_pred             cccCCCCCc-chhhhHHHHHHhh
Q psy4515         122 VRVDNMTSS-WRDGLAFCALIHH  143 (149)
Q Consensus       122 V~v~nfs~s-w~dgla~~ali~~  143 (149)
                      +.|+.+..+ ..|-+-|+.-++.
T Consensus        79 i~v~kLikgk~qdnleflqWfk~  101 (120)
T d2qjza1          79 IPVDKLVKGKFQDNFEFVQWFKK  101 (120)
T ss_dssp             CCHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHhcccchhHHHHHHHHHH
Confidence            666666654 3555555555544

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=0.038  Score=38.87  Aligned_cols=47  Identities=13%  Similarity=0.103  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHhhCCCCCe---eecCCCcccccchhhhhhhhccCCCccC
Q psy4515          62 GTKALEMWCRRVTEGYPGV---RVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        62 ~k~~LL~W~q~~~~~y~~v---~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      .++.++.|....+...-+.   .-.+|....+||.++|.|++..+|+.++
T Consensus        10 ~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~   59 (144)
T d1ujoa_          10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSK   59 (144)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTC
T ss_pred             HHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCC
Confidence            4678999999988653221   2357888899999999999999999875

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.83  E-value=0.072  Score=37.56  Aligned_cols=44  Identities=18%  Similarity=0.401  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccC
Q psy4515          64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        64 ~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      +.+..|++..+.. ....+.||....+||.++|.|+....|+.+.
T Consensus        14 ~e~~~Wi~~~l~~-~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~   57 (159)
T d1p2xa_          14 DEAKKWIEECLGT-DLGPTSTFEQSLRNGVVLALLVQKFQPDKLI   57 (159)
T ss_dssp             HHHHHHHHHHHTS-CCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC
T ss_pred             HHHHHHHHHHhCC-CCCChhHHHHHHhhHHHHHHHHHHHCCCCCc
Confidence            4577899999865 3346789999999999999999999988774

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.52  E-value=0.083  Score=35.26  Aligned_cols=42  Identities=26%  Similarity=0.633  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccC
Q psy4515          64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIF  108 (149)
Q Consensus        64 ~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid  108 (149)
                      +.+..|..+.+..-  +. .+|....+||.++|-+++..+|+.++
T Consensus         6 ~e~~~Wie~~~~~~--~~-~~~~~~L~dGv~LC~L~N~l~pg~i~   47 (108)
T d1h67a_           6 RQLRVWIEGATGRR--IG-DNFMDGLKDGVILCELINKLQPGSVQ   47 (108)
T ss_dssp             HHHHHHHHHHHSCC--CC-SCHHHHHHHCSHHHHHHHHHSTTSST
T ss_pred             HHHHHHHHHHhCCC--Cc-hHHHHHHcCchhHHHHHHHHHhcCCC
Confidence            45889999988642  32 68888999999999999999999884