Psyllid ID: psy4517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Secondary Structure (PSIPRED)
cccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
maappprrkmstsgdSLYVILelpktatpeEIKKQYRKMALKyhpdknpnnpeAAEKFKEINRahstlsdqtkrnIYDTYGSLGLYVAEqfgeenvnTYFMVTSTWCKN
Flexible Loop (DISEMBL)
maappprrkmstsgdsLYVILelpktatpeeIKKQYRKMALKYHPDKNPNNPEAAEKFKEINrahstlsdqtkrnIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Low Complexity Region (SEG)
MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Disordered region (IsUnstruct)
****************LYVILEL**************************************************RNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWC**
Disordered Region (DISOPRED)
*****************YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Disordered Region (DISEMBL)
************SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Disordered Region (DISPRO)
**************DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE*FGEENVNTYFMVTSTWCKN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
P56101	195	Cysteine string protein O	N/A	N/A	0.935	0.523	0.754	9e-43
Q03751	249	Cysteine string protein O	no	N/A	0.990	0.433	0.752	3e-42
Q9H3Z4	198	DnaJ homolog subfamily C	yes	N/A	0.935	0.515	0.735	8e-41
P60905	198	DnaJ homolog subfamily C	yes	N/A	0.935	0.515	0.735	8e-41
P60904	198	DnaJ homolog subfamily C	yes	N/A	0.935	0.515	0.735	8e-41
Q29455	198	DnaJ homolog subfamily C	yes	N/A	0.935	0.515	0.735	8e-41
O42196	197	Cysteine string protein O	N/A	N/A	0.935	0.517	0.735	4e-40
F1RTY8	199	DnaJ homolog subfamily C	yes	N/A	0.935	0.512	0.735	5e-39
D3ZD82	199	DnaJ homolog subfamily C	no	N/A	0.935	0.512	0.725	5e-39
Q9CQ94	199	DnaJ homolog subfamily C	no	N/A	0.990	0.542	0.684	1e-38

>sp|P56101|CSP_TORCA Cysteine string protein OS=Torpedo californica PE=1 SV=1

 Score =  171 bits (434), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 91/102 (89%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSGDSLY++L L K A+PE+IKK YRK+ALKYHPDKNP+NPEA+EKFKEIN AH+
Sbjct: 6   QRSLSTSGDSLYIVLGLDKNASPEDIKKSYRKLALKYHPDKNPDNPEASEKFKEINNAHA 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.
Torpedo californica (taxid: 7787)

>sp|Q03751|CSP_DROME Cysteine string protein OS=Drosophila melanogaster GN=Csp PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 1   MAAPP-PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFK 59
           M+AP   +RK+STSGDSLY IL LPKTAT ++IKK YRK+ALKYHPDKNP+N +AA+KFK
Sbjct: 1   MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNPDNVDAADKFK 60

Query: 60  EINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
           E+NRAHS LS+QTKRNIYD YGSLGLY+AEQFGEENVN YF+VTS   K
Sbjct: 61  EVNRAHSILSNQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTSPAVK 109

May have an important role in presynaptic function.

Drosophila melanogaster (taxid: 7227)

>sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 OS=Homo sapiens GN=DNAJC5 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 6   QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.

Homo sapiens (taxid: 9606)

>sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 OS=Rattus norvegicus GN=Dnajc5 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 6   QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.

Rattus norvegicus (taxid: 10116)

>sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 OS=Mus musculus GN=Dnajc5 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 6   QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.

Mus musculus (taxid: 10090)

>sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 OS=Bos taurus GN=DNAJC5 PE=2 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 6   QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.

Bos taurus (taxid: 9913)

>sp|O42196|CSP_XENLA Cysteine string protein OS=Xenopus laevis GN=csp PE=2 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 88/102 (86%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEA+EKFKEIN AH 
Sbjct: 6   QRSLSTSGESLYHVLGLDKNATTDDIKKCYRKLALKYHPDKNPDNPEASEKFKEINNAHG 65

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct: 66  ILADSTKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

May have an important role in presynaptic function. May be involved in calcium-dependent neurotransmitter release at nerve endings.

Xenopus laevis (taxid: 8355)

>sp|F1RTY8|DNJ5B_PIG DnaJ homolog subfamily C member 5B OS=Sus scrofa GN=DNAJC5B PE=3 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 88/102 (86%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R MSTSG++LY IL L K A+ EEIKK YRK+ALK+HPDKNP++P AAEKFKEIN AH+
Sbjct: 10  QRTMSTSGEALYEILGLHKGASNEEIKKTYRKLALKHHPDKNPDDPGAAEKFKEINNAHT 69

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D +KRNIYD YGSLGLYVAEQFGEENVNTYFM++S W K
Sbjct: 70  ILTDMSKRNIYDKYGSLGLYVAEQFGEENVNTYFMLSSWWAK 111

Sus scrofa (taxid: 9823)

>sp|D3ZD82|DNJ5B_RAT DnaJ homolog subfamily C member 5B OS=Rattus norvegicus GN=Dnajc5b PE=3 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 88/102 (86%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R MSTSG+SLY IL L K A+ EEIKK YRK+AL++HPDKNP++P AAEKFKEIN AH+
Sbjct: 10  QRAMSTSGESLYEILGLHKGASCEEIKKTYRKLALRHHPDKNPDDPSAAEKFKEINNAHT 69

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D +KRNIYD YGSLGLYVAEQFG+ENVNTYFM++S W K
Sbjct: 70  ILTDNSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAK 111

Rattus norvegicus (taxid: 10116)

>sp|Q9CQ94|DNJ5B_MOUSE DnaJ homolog subfamily C member 5B OS=Mus musculus GN=Dnajc5b PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 91/111 (81%), Gaps = 3/111 (2%)

Query: 1   MAAPPP---RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEK 57
           MA   P   +R +STSG+SLY IL L K A+ EEIKK YRK+AL++HPDKNP++P AAEK
Sbjct: 1   MACNAPNQRQRTLSTSGESLYEILGLHKGASCEEIKKTYRKLALRHHPDKNPDDPSAAEK 60

Query: 58  FKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
           FKEIN AH+ L+D +KRNIYD YGSLGLYVAEQFG+ENVNTYFM++S W K
Sbjct: 61  FKEINNAHTILTDTSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAK 111

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
307172857	231	Cysteine string protein [Camponotus flor	0.935	0.441	0.852	1e-46
380028782	168	PREDICTED: cysteine string protein-like	0.935	0.607	0.852	2e-46
340722080	231	PREDICTED: cysteine string protein-like	0.935	0.441	0.843	2e-46
350423811	231	PREDICTED: cysteine string protein-like	0.935	0.441	0.843	2e-46
340722082	212	PREDICTED: cysteine string protein-like	0.935	0.481	0.843	2e-46
350423814	212	PREDICTED: cysteine string protein-like	0.935	0.481	0.843	3e-46
91084337	237	PREDICTED: similar to AGAP007620-PA [Tri	0.935	0.430	0.833	2e-45
427792489	261	hypothetical protein, partial [Rhipiceph	0.944	0.394	0.815	5e-45
346465445	255	hypothetical protein [Amblyomma maculatu	0.944	0.403	0.805	5e-45
427792491	248	hypothetical protein, partial [Rhipiceph	0.944	0.415	0.815	6e-45

>gi|307172857|gb|EFN64062.1| Cysteine string protein [Camponotus floridanus]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 94/102 (92%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           RRKMST+GDSLY ILE+PKTAT EEIKK YR++ALKYHPDKNPNNPEAAEKFKEINRAH+
Sbjct: 3   RRKMSTAGDSLYQILEIPKTATSEEIKKTYRRLALKYHPDKNPNNPEAAEKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028782|ref|XP_003698066.1| PREDICTED: cysteine string protein-like [Apis florea]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RKMST+GDSLY ILE+PKTATPEEIK+ YRK+ALKYHPDKNPNNPEAAEKFKEINRAH+
Sbjct: 3   KRKMSTAGDSLYQILEIPKTATPEEIKRTYRKLALKYHPDKNPNNPEAAEKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722080|ref|XP_003399438.1| PREDICTED: cysteine string protein-like [Bombus terrestris]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RKMST+GDSLY ILE+PKTATPEEIK+ YRK+ALKYHPDKNPNNPEAA+KFKEINRAH+
Sbjct: 3   KRKMSTAGDSLYQILEIPKTATPEEIKRTYRKLALKYHPDKNPNNPEAADKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423811|ref|XP_003493599.1| PREDICTED: cysteine string protein-like isoform 1 [Bombus impatiens]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RKMST+GDSLY ILE+PKTATPEEIK+ YRK+ALKYHPDKNPNNPEAA+KFKEINRAH+
Sbjct: 3   KRKMSTAGDSLYQILEIPKTATPEEIKRTYRKLALKYHPDKNPNNPEAADKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722082|ref|XP_003399439.1| PREDICTED: cysteine string protein-like [Bombus terrestris]

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RKMST+GDSLY ILE+PKTATPEEIK+ YRK+ALKYHPDKNPNNPEAA+KFKEINRAH+
Sbjct: 3   KRKMSTAGDSLYQILEIPKTATPEEIKRTYRKLALKYHPDKNPNNPEAADKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423814|ref|XP_003493600.1| PREDICTED: cysteine string protein-like isoform 2 [Bombus impatiens]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RKMST+GDSLY ILE+PKTATPEEIK+ YRK+ALKYHPDKNPNNPEAA+KFKEINRAH+
Sbjct: 3   KRKMSTAGDSLYQILEIPKTATPEEIKRTYRKLALKYHPDKNPNNPEAADKFKEINRAHA 62

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            L+D TKRNIYD YGSLGLYVAEQFGEENVN YF+VTS WCK
Sbjct: 63  ILTDLTKRNIYDNYGSLGLYVAEQFGEENVNAYFVVTSGWCK 104

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084337|ref|XP_972793.1| PREDICTED: similar to AGAP007620-PA [Tribolium castaneum] gi|270008724|gb|EFA05172.1| hypothetical protein TcasGA2_TC015301 [Tribolium castaneum]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 93/102 (91%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +RK+ST GDSLY IL LPKTAT EEIKK YR++ALKYHPDKNPNNPEA+EKFKE+NRAHS
Sbjct: 4   KRKLSTQGDSLYQILALPKTATSEEIKKTYRRLALKYHPDKNPNNPEASEKFKEVNRAHS 63

Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
            LSD TKRNIYD YGSLGLY+AEQFGEENVN YF+VTSTWCK
Sbjct: 64  ILSDPTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTSTWCK 105

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792489|gb|JAA61696.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 94/103 (91%)

Query: 6   PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
           P RK+STSGDSLY IL LPKT+TPE+IK+ YR++ALKYHPDKNP+NPEAAEKFK+INRAH
Sbjct: 34  PGRKLSTSGDSLYEILGLPKTSTPEDIKRTYRRLALKYHPDKNPDNPEAAEKFKDINRAH 93

Query: 66  STLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
           S L D TKRNIYD YGSLGLYVAEQFGEENVNTYF++TS WCK
Sbjct: 94  SILVDLTKRNIYDNYGSLGLYVAEQFGEENVNTYFVLTSGWCK 136

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465445|gb|AEO32567.1| hypothetical protein [Amblyomma maculatum]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 95/103 (92%)

Query: 6   PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
           P RK+STSGDSLY IL LPKT+TP++IK+ YR++ALKYHPDKNP+NPEAA+KFKEINRAH
Sbjct: 36  PGRKLSTSGDSLYEILGLPKTSTPDDIKRTYRRLALKYHPDKNPDNPEAADKFKEINRAH 95

Query: 66  STLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
           S L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF++TS WCK
Sbjct: 96  SILTDLTKRNIYDNYGSLGLYVAEQFGEENVNTYFVLTSGWCK 138

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792491|gb|JAA61697.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 94/103 (91%)

Query: 6   PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
           P RK+STSGDSLY IL LPKT+TPE+IK+ YR++ALKYHPDKNP+NPEAAEKFK+INRAH
Sbjct: 34  PGRKLSTSGDSLYEILGLPKTSTPEDIKRTYRRLALKYHPDKNPDNPEAAEKFKDINRAH 93

Query: 66  STLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
           S L D TKRNIYD YGSLGLYVAEQFGEENVNTYF++TS WCK
Sbjct: 94  SILVDLTKRNIYDNYGSLGLYVAEQFGEENVNTYFVLTSGWCK 136

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0004179	249	Csp "Cysteine string protein"	0.954	0.417	0.771	6.8e-40
ZFIN|ZDB-GENE-081021-2	199	dnajc5ab "DnaJ (Hsp40) homolog	0.990	0.542	0.712	7.8e-39
UNIPROTKB|E1C4G0	198	DNAJC5 "Uncharacterized protei	0.935	0.515	0.745	1.3e-38
UNIPROTKB|Q29455	198	DNAJC5 "DnaJ homolog subfamily	0.935	0.515	0.735	2.6e-38
UNIPROTKB|E2RJB9	198	DNAJC5 "Uncharacterized protei	0.935	0.515	0.735	2.6e-38
UNIPROTKB|Q9H3Z4	198	DNAJC5 "DnaJ homolog subfamily	0.935	0.515	0.735	2.6e-38
MGI|MGI:892995	198	Dnajc5 "DnaJ (Hsp40) homolog,	0.935	0.515	0.735	2.6e-38
RGD|620516	198	Dnajc5 "DnaJ (Hsp40) homolog,	0.935	0.515	0.735	2.6e-38
UNIPROTKB|F1RTY8	199	DNAJC5B "DnaJ homolog subfamil	0.935	0.512	0.735	1e-36
RGD|1562486	199	Dnajc5b "DnaJ (Hsp40) homolog,	0.935	0.512	0.725	1.7e-36

FB|FBgn0004179 Csp "Cysteine string protein" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/105 (77%), Positives = 94/105 (89%)

Query:     1 MAAPP-PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFK 59
             M+AP   +RK+STSGDSLY IL LPKTAT ++IKK YRK+ALKYHPDKNP+N +AA+KFK
Sbjct:     1 MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNPDNVDAADKFK 60

Query:    60 EINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTS 104
             E+NRAHS LS+QTKRNIYD YGSLGLY+AEQFGEENVN YF+VTS
Sbjct:    61 EVNRAHSILSNQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTS 105

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016191 "synaptic vesicle uncoating" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=IDA;TAS

GO:0006457 "protein folding" evidence=NAS

GO:0006887 "exocytosis" evidence=IMP

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0043195 "terminal bouton" evidence=IDA

ZFIN|ZDB-GENE-081021-2 dnajc5ab "DnaJ (Hsp40) homolog, subfamily C, member 5ab" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 77/108 (71%), Positives = 90/108 (83%)

Query:     1 MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKE 60
             MA    +R +STSG+SLYV+L + K    E+IKK YRK+ALK+HPDKNPNNPEAA+KFKE
Sbjct:     1 MAEQQRQRALSTSGESLYVVLGVEKNTAQEDIKKSYRKLALKFHPDKNPNNPEAADKFKE 60

Query:    61 INRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
             IN AH+ LSD TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    61 INNAHAILSDPTKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 108

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C4G0 DNAJC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/102 (74%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAAEKFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAEKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0005886 "plasma membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

UNIPROTKB|Q29455 DNAJC5 "DnaJ homolog subfamily C member 5" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0005886 "plasma membrane" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

UNIPROTKB|E2RJB9 DNAJC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9H3Z4 DNAJC5 "DnaJ homolog subfamily C member 5" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0008219 "cell death" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0061202 "clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane" evidence=TAS

MGI|MGI:892995 Dnajc5 "DnaJ (Hsp40) homolog, subfamily C, member 5" [Mus musculus (taxid:10090)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IGI

RGD|620516 Dnajc5 "DnaJ (Hsp40) homolog, subfamily C, member 5" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct:     6 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 65

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+++S W K
Sbjct:    66 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK 107

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IPI

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA;ISO

UNIPROTKB|F1RTY8 DNAJC5B "DnaJ homolog subfamily C member 5B" [Sus scrofa (taxid:9823)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 75/102 (73%), Positives = 88/102 (86%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R MSTSG++LY IL L K A+ EEIKK YRK+ALK+HPDKNP++P AAEKFKEIN AH+
Sbjct:    10 QRTMSTSGEALYEILGLHKGASNEEIKKTYRKLALKHHPDKNPDDPGAAEKFKEINNAHT 69

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D +KRNIYD YGSLGLYVAEQFGEENVNTYFM++S W K
Sbjct:    70 ILTDMSKRNIYDKYGSLGLYVAEQFGEENVNTYFMLSSWWAK 111

GO:0016020 "membrane" evidence=IEA

RGD|1562486 Dnajc5b "DnaJ (Hsp40) homolog, subfamily C, member 5 beta" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 74/102 (72%), Positives = 88/102 (86%)

Query:     7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
             +R MSTSG+SLY IL L K A+ EEIKK YRK+AL++HPDKNP++P AAEKFKEIN AH+
Sbjct:    10 QRAMSTSGESLYEILGLHKGASCEEIKKTYRKLALRHHPDKNPDDPSAAEKFKEINNAHT 69

Query:    67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMVTSTWCK 108
              L+D +KRNIYD YGSLGLYVAEQFG+ENVNTYFM++S W K
Sbjct:    70 ILTDNSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAK 111

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6Q486	DNAJ_NITSB	No assigned EC number	0.6323	0.6238	0.1823	yes	N/A
B0BBX5	DNAJ_CHLTB	No assigned EC number	0.6093	0.5871	0.1632	yes	N/A
B9MJZ0	DNAJ_CALBD	No assigned EC number	0.5937	0.5871	0.1649	yes	N/A
Q5HCG4	DNAJ_EHRRW	No assigned EC number	0.5301	0.7614	0.2172	yes	N/A
P63968	DNAJ_NEIMA	No assigned EC number	0.5797	0.6330	0.1849	yes	N/A
P63969	DNAJ_NEIMB	No assigned EC number	0.5797	0.6330	0.1849	yes	N/A
Q2GI75	DNAJ_EHRCR	No assigned EC number	0.6376	0.6330	0.1815	yes	N/A
Q3KM17	DNAJ_CHLTA	No assigned EC number	0.6093	0.5871	0.1632	yes	N/A
O84345	DNAJ_CHLTR	No assigned EC number	0.6093	0.5871	0.1632	yes	N/A
B0B7R0	DNAJ_CHLT2	No assigned EC number	0.6093	0.5871	0.1632	yes	N/A
Q5F5M1	DNAJ_NEIG1	No assigned EC number	0.5652	0.6330	0.1849	yes	N/A
Q5P9E0	DNAJ_ANAMM	No assigned EC number	0.5652	0.6330	0.1820	yes	N/A
Q29455	DNJC5_BOVIN	No assigned EC number	0.7352	0.9357	0.5151	yes	N/A
Q253T6	DNAJ_CHLFF	No assigned EC number	0.5937	0.5871	0.1636	yes	N/A
Q3AF07	DNAJ_CARHZ	No assigned EC number	0.6029	0.6238	0.1784	yes	N/A
Q9PK53	DNAJ_CHLMU	No assigned EC number	0.6093	0.5871	0.1632	yes	N/A
Q3YT99	DNAJ_EHRCJ	No assigned EC number	0.5421	0.7614	0.2172	yes	N/A
A1KR91	DNAJ_NEIMF	No assigned EC number	0.5797	0.6330	0.1849	yes	N/A
A9LZV9	DNAJ_NEIM0	No assigned EC number	0.5797	0.6330	0.1849	yes	N/A
Q6ME07	DNAJ_PARUW	No assigned EC number	0.5735	0.6238	0.1761	yes	N/A
Q7M9T3	DNAJ_WOLSU	No assigned EC number	0.5735	0.6238	0.1818	yes	N/A
F1RTY8	DNJ5B_PIG	No assigned EC number	0.7352	0.9357	0.5125	yes	N/A
Q5FGQ8	DNAJ_EHRRG	No assigned EC number	0.5301	0.7614	0.2172	yes	N/A
Q8KCD8	DNAJ_CHLTE	No assigned EC number	0.5937	0.5871	0.1588	yes	N/A
Q75WD2	DNAJ_ACEP3	No assigned EC number	0.5555	0.6513	0.1868	yes	N/A
Q182E7	DNAJ_CLOD6	No assigned EC number	0.5789	0.6880	0.1953	yes	N/A
Q9H3Z4	DNJC5_HUMAN	No assigned EC number	0.7352	0.9357	0.5151	yes	N/A
Q823T2	DNAJ_CHLCV	No assigned EC number	0.5820	0.6146	0.1709	yes	N/A
Q7VG06	DNAJ_HELHP	No assigned EC number	0.5882	0.6238	0.1766	yes	N/A
P60905	DNJC5_RAT	No assigned EC number	0.7352	0.9357	0.5151	yes	N/A
P60904	DNJC5_MOUSE	No assigned EC number	0.7352	0.9357	0.5151	yes	N/A
Q5L6F7	DNAJ_CHLAB	No assigned EC number	0.5937	0.5871	0.1636	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-34
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-31
pfam00226	63	pfam00226, DnaJ, DnaJ domain	4e-31
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-30
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-27
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	9e-27
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-26
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-26
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-24
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-24
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-24
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-23
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	5e-23
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	8e-23
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	9e-23
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-22
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-21
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-21
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-21
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-21
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-20
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-20
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-20
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	8e-20
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-19
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-19
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-19
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-18
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-18
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-18
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	8e-18
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	9e-16
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-14
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	9e-14
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-13
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	5e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	6e-10
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	9e-07
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	3e-05
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	4e-05
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	5e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-05
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	1e-04
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	2e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	8e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.001

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  121 bits (305), Expect = 2e-34
 Identities = 40/70 (57%), Positives = 47/70 (67%)

Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
            Y IL + K A+ EEIKK YRK+A KYHPD+NP + EA EKFKEIN A+  LSD  KR 
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 76 IYDTYGSLGL 85
           YD +G  G 
Sbjct: 65 AYDQFGHAGF 74

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  113 bits (285), Expect = 1e-31
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A+ +EIKK YRK+A+KYHPD+NP + EA EKFKEI  A+  LSD  KR  Y
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66

Query: 78 DTYG 81
          D YG
Sbjct: 67 DQYG 70

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  104 bits (262), Expect = 4e-31
 Identities = 41/62 (66%), Positives = 47/62 (75%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
           Y IL +P+ A+ EEIKK YRK+ALKYHPDKNP +P A EKFKEIN A+  LSD  KR I
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 77 YD 78
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  110 bits (278), Expect = 1e-30
 Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + K A+ EEIKK YRK+A KYHPD+N  + EA EKFKEIN A+  LSD  KR  Y
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQY 61

Query: 78 DTYGSLGL 85
          D +G  G 
Sbjct: 62 DQFGHAGF 69

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  102 bits (255), Expect = 4e-27
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA+PEEIKK YRK+A+KYHPDKNP + EA ++FKE++ A+  LSD  KR  Y
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 78 DTYGSLGLY 86
          D YG  G +
Sbjct: 64 DRYGKDGPF 72

Length = 391

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  100 bits (251), Expect = 9e-27
 Identities = 39/68 (57%), Positives = 47/68 (69%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + + A+ EEIKK YRK+A+KYHPD+NP + EA E FKE   A+  LSD  KR IY
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 78 DTYGSLGL 85
          D YG  GL
Sbjct: 67 DQYGHEGL 74

Length = 366

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 93.0 bits (232), Expect = 1e-26
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
          Y IL +P  A+ EEIKK YRK+ALKYHPDKNP++PEA EKFKEIN A+  LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 99.5 bits (248), Expect = 3e-26
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + + AT EEIKK YR++A KYHPD N  NPEA EKFKEIN A+  LSD  KR +Y
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLY 64

Query: 78 DTYGSLGLYVA--EQFGEE 94
          D +G      +  +Q G+E
Sbjct: 65 DQFGHAAFSGSGQQQQGQE 83

Length = 382

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 94.9 bits (236), Expect = 2e-24
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + ++A  +EIKK YRK+ALKYHPDKNP+N EA E FKE+N A+  LS+  KR  Y
Sbjct: 6  YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 78 DTYGSLGL 85
          D +G  G+
Sbjct: 66 DQFGHAGV 73

Length = 397

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 37/65 (56%), Positives = 47/65 (72%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L L K A+ +EIKK +RK+A+KYHPDKN  N EA EKFKEIN A+  LSD  K+  Y
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 78 DTYGS 82
          D +G+
Sbjct: 67 DQFGT 71

Length = 380

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 86.9 bits (216), Expect = 3e-24
 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTK 73
            Y IL +P+ A+ +EIKK YRK+ALKYHPDKNP +  EA EKFKEIN A+  LSD  K
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 92.6 bits (230), Expect = 1e-23
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
           Y IL + + AT EEIKK YR++A KYHPD NP + EA +KFKEIN A+  LSD  KR  
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 77 YDTYG 81
          YD +G
Sbjct: 67 YDQFG 71

Length = 386

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS 69
          M+T+ D  Y IL L K A+ E+IKK YRK+A+KYHPDKN   P+A EKFKEI+ A++ LS
Sbjct: 1  MATTRD-YYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLS 58

Query: 70 DQTKRNIYDTYGSLGLYVAEQFGEENV 96
          D  KR  YD +G  G  +  Q+  E++
Sbjct: 59 DAEKRAQYDRFGHAG--IDNQYSAEDI 83

Length = 377

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 90.2 bits (224), Expect = 8e-23
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A+ +EIKK YRK+AL+YHPD+NP+NPEA +KFKE   A+  L D  KR  Y
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 78 DTYGSLGL 85
          D +G  G+
Sbjct: 67 DRFGHAGV 74

Length = 373

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 90.3 bits (224), Expect = 9e-23
 Identities = 40/75 (53%), Positives = 50/75 (66%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + KTAT +EIKK YRK A++YHPDKNP + EA EKFKE   A+  LSD  KR+ Y
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 78 DTYGSLGLYVAEQFG 92
          D +G  G+  A   G
Sbjct: 68 DQFGHAGVGGAAGGG 82

Length = 386

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 88.1 bits (218), Expect = 2e-22
 Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +PK A+ +EIKK ++K+A KYHPD N  +P A EKFKEIN A++ LSD  KR IY
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRRIY 65

Query: 78 DTYGS 82
          DTYG+
Sbjct: 66 DTYGT 70

Length = 291

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 87.0 bits (216), Expect = 1e-21
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A+  EIK+ YRK+A + HPD NP + EA EKFKEI+ A+  LSD  KR I 
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIV 64

Query: 78 DTYG 81
          D  G
Sbjct: 65 DLGG 68

Length = 378

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 4  PPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
             RRK     + LY +L L K  T  EIKK YRK+A+K+HPDK  +     EKFKEI+R
Sbjct: 17 DGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISR 72

Query: 64 AHSTLSDQTKRNIYDTYGSLGL 85
          A+  LSD  KR IYD YG  GL
Sbjct: 73 AYEVLSDPEKRKIYDEYGEEGL 94

Length = 421

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
           Y  L + K A+ +EIKK YRK++ KYHPD N   P A EK+KE+  A+ TLSD  KR  
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 77 YDTYGSLG 84
          YD YG+ G
Sbjct: 65 YDQYGAAG 72

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 84.9 bits (210), Expect = 8e-21
 Identities = 35/66 (53%), Positives = 45/66 (68%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L +PK AT  EIKK YRK+A +YHPD N  + +A E+FKEI+ A+  LSD+ KR  Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 78 DTYGSL 83
          D   SL
Sbjct: 72 DEARSL 77

Length = 389

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y  L +   A+ EEIKK YRK+A + HPD NP +P A E+FK ++ AH  LSD  KR  Y
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71

Query: 78 D 78
          D
Sbjct: 72 D 72

Length = 392

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 41/70 (58%), Positives = 49/70 (70%)

Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
          S Y ILE+ K +  E IKK YRK+ALKYHPD+N  + EA EKFK IN A+  LSD+ KR 
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 76 IYDTYGSLGL 85
          +YD YG  GL
Sbjct: 64 LYDRYGKKGL 73

Length = 369

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 83.4 bits (206), Expect = 2e-20
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + +TA+ +EIK  YRK+ALKYHPD+N     AAEKF +IN A++ LSD  KR  Y
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHY 63

Query: 78 DTYGS 82
          D +G+
Sbjct: 64 DRFGT 68

Length = 371

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 82.0 bits (203), Expect = 8e-20
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + + A  +E+K+ YR++A KYHPD N   P A ++FKEINRA+  LSD   R  Y
Sbjct: 6  YEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARY 64

Query: 78 DTYGSLGL 85
          D +G  G+
Sbjct: 65 DQFGEAGV 72

Length = 374

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + K+A+ +EIKK YRK++ KYHPD N     A EKFKEI+ A+  LSD  KR  Y
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVLSDDQKRAQY 65

Query: 78 DTYGSLG 84
          D +G  G
Sbjct: 66 DQFGHAG 72

Length = 376

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 79.9 bits (197), Expect = 5e-19
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A  +EIKK YRK+A KYHPD +     A EKFKEI+ A++ LSD  KR  Y
Sbjct: 8  YEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQRY 66

Query: 78 DTYGSLGLYVAEQFGEE----NVN 97
          D +G  G+   + F +E    N+N
Sbjct: 67 DQFGHAGM---DGFSQEDIFNNIN 87

Length = 378

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 79.6 bits (196), Expect = 6e-19
 Identities = 38/73 (52%), Positives = 46/73 (63%)

Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQT 72
          S  S Y IL + K+A  EEIK  YRK+A+KYHPDKN  N E+ EKFKE   A+  L D  
Sbjct: 2  SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61

Query: 73 KRNIYDTYGSLGL 85
          KR  YD +G  G+
Sbjct: 62 KRQAYDQFGKAGV 74

Length = 372

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 5/74 (6%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNI 76
          Y IL + + AT EEIK+ Y+++  ++HPD++P N  EA +KFKEI  A+  LSD  KR +
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 77 YDTYGSLGLYVAEQ 90
          YD +G    YV EQ
Sbjct: 67 YDRFG----YVGEQ 76

Length = 369

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 76.8 bits (188), Expect = 2e-18
 Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKR 74
            Y IL +P  A+ EEIKK YRK+ALKYHPD+NP +P  A EKFKEIN A+  LSD  +R
Sbjct: 7  DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 75 NIYDTYGSLGLYVAEQFGEE 94
            YD  G+   +  + + E 
Sbjct: 67 AEYDKIGADNYFPGKSYRES 86

Length = 237

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 76.5 bits (188), Expect = 8e-18
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNI 76
          Y IL + + A+ E+IKK +R++A K+HPD +P N  EA EKFKEI+ A+  LSD  KR  
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 77 YDTYGS 82
          YD  G+
Sbjct: 66 YDQTGT 71

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 76.6 bits (188), Expect = 8e-18
 Identities = 35/64 (54%), Positives = 41/64 (64%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL L K A+ +EIKK YRK+A+KYHPDKN  N EA   FKE   A+  L D  KR  Y
Sbjct: 6  YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 78 DTYG 81
          D +G
Sbjct: 66 DRFG 69

Length = 365

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 70.7 bits (173), Expect = 9e-16
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + KTA+ +EI++ YRK+A +YHPD N  +P+A +K  EIN A   L D+ KR  Y
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRKQY 65

Query: 78 DTYG 81
          D +G
Sbjct: 66 DQFG 69

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A+ +E+KK YRK+A KYHPD N   P+A +KFKE+  A+ TLSD  K+  Y
Sbjct: 7  YEVLGVDRNASVDEVKKAYRKLARKYHPDVN-KAPDAEDKFKEVKEAYDTLSDPQKKAHY 65

Query: 78 DTYG 81
          D +G
Sbjct: 66 DQFG 69

Length = 371

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA+  ++KK Y K+A +YHPD   +  +A +KFKEIN A+  L D+ KR  Y
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64

Query: 78 DTYG 81
          D +G
Sbjct: 65 DRFG 68

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + + A  +EIKK +RK+A KYHPD+N   P+AA  F EIN A+  LS+  KR  Y
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 78 DTYGSLGL 85
          D YG  G+
Sbjct: 64 DKYGHDGV 71

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y I+ +  T   + IK  YR++A KYHPD +   P+A  +FKE+  A   LSD+ +R  Y
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEY 65

Query: 78 D 78
          D
Sbjct: 66 D 66

Length = 306

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPN-----NPEAAEKFKEINRAHSTLSDQT 72
           Y IL + +  +  +IKK+YR +++K+HPDK P        E  EK+K I +A+  L+D+ 
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 73  KRNIYDTYGS 82
           +R  Y  YG+
Sbjct: 161 RRENYLNYGT 170

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 17  LYVILELPK---TATPEEIKKQYRKMALKYHPDKNP--NNPEAAEKFKEINRAHSTLSDQ 71
           LY +L L K    A P +I K ++K   KYHPDK     N    E FK I +A   L D+
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104

Query: 72  TKRNIYDT 79
             R  YD+
Sbjct: 105 KLRLQYDS 112

Length = 379

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 21 LELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
          L LP++A      ++K Y +  L++HPDK  +     EK KE+N 
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNT 51

Length = 153

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 20 ILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKF---KEINRAHSTLSDQTKR 74
          +L LP+      + ++KQY  M +KYHPDK     E  +      E+N A+STL D  KR
Sbjct: 7  LLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKR 66

Query: 75 NIY 77
            Y
Sbjct: 67 AEY 69

Length = 166

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 11  STSGDSL---YVILELPKTATPEEIKKQYRKMALKYHPDK 47
           +  G +L   Y +L + ++   +EIK+ YRK+  ++HPDK
Sbjct: 193 AQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
           Y IL +   A  +EI ++Y K+A  Y+P K   N E   KFK+IN A+  L D  K+ +Y
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMY 634

Query: 78  DTYGSLGLYVAEQFGEENVNTYFMVTS 104
           + +G  G+   +     + + ++++ S
Sbjct: 635 NKFGYDGI---KGVNFIHPSIFYLLAS 658

Length = 1136

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 21 LELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
          L LP  A      ++K Y +   +YHPDK  +     EK K +N 
Sbjct: 17 LGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE----EKMKRLNS 57

Length = 647

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 32 IKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIY 77
          ++K+YR++  +YHPD +    E   A+++   +N+A+ TL D  +R  Y
Sbjct: 8  LRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 19 VILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAA-----EKFKEINRAHSTLSDQ 71
          V+  LP+      + +K QYR++   YHPD+     EA      ++  E+N A+ TL D 
Sbjct: 5  VLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDP 64

Query: 72 TKRNIY 77
            R  Y
Sbjct: 65 LLRAEY 70

Length = 174

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDK---NPNNPE----AAEKFK 59
             +     +    +L +   A  + IKK YRK+  + HPDK        E      EK +
Sbjct: 105 EAREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ 164

Query: 60  EINRA 64
           EI  A
Sbjct: 165 EIQEA 169

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.96
KOG0713|consensus	336		99.94
PRK14288	369	chaperone protein DnaJ; Provisional	99.92
KOG0716|consensus	279		99.91
KOG0712|consensus	337		99.89
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.89
PRK14296	372	chaperone protein DnaJ; Provisional	99.89
KOG0717|consensus	508		99.89
PRK14286	372	chaperone protein DnaJ; Provisional	99.89
PRK14279	392	chaperone protein DnaJ; Provisional	99.89
PRK14294	366	chaperone protein DnaJ; Provisional	99.88
PRK14287	371	chaperone protein DnaJ; Provisional	99.88
PRK14281	397	chaperone protein DnaJ; Provisional	99.88
PRK14285	365	chaperone protein DnaJ; Provisional	99.88
PRK14298	377	chaperone protein DnaJ; Provisional	99.88
PRK14282	369	chaperone protein DnaJ; Provisional	99.87
PRK14277	386	chaperone protein DnaJ; Provisional	99.87
PRK14301	373	chaperone protein DnaJ; Provisional	99.87
PRK14297	380	chaperone protein DnaJ; Provisional	99.87
PRK14276	380	chaperone protein DnaJ; Provisional	99.87
PRK14283	378	chaperone protein DnaJ; Provisional	99.86
PRK14295	389	chaperone protein DnaJ; Provisional	99.86
PRK14284	391	chaperone protein DnaJ; Provisional	99.86
PRK10767	371	chaperone protein DnaJ; Provisional	99.86
PRK14291	382	chaperone protein DnaJ; Provisional	99.86
PRK14299	291	chaperone protein DnaJ; Provisional	99.86
PRK14280	376	chaperone protein DnaJ; Provisional	99.86
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.86
PRK14278	378	chaperone protein DnaJ; Provisional	99.85
KOG0691|consensus	296		99.85
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.85
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.85
PRK14289	386	chaperone protein DnaJ; Provisional	99.84
PRK14290	365	chaperone protein DnaJ; Provisional	99.84
KOG0718|consensus	546		99.84
PRK14300	372	chaperone protein DnaJ; Provisional	99.83
KOG0715|consensus	288		99.83
PRK14292	371	chaperone protein DnaJ; Provisional	99.82
PRK14293	374	chaperone protein DnaJ; Provisional	99.82
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.81
KOG0719|consensus	264		99.8
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.8
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.78
KOG0721|consensus	230		99.77
PHA03102	153	Small T antigen; Reviewed	99.76
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.75
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
PRK05014	171	hscB co-chaperone HscB; Provisional	99.69
PRK03578	176	hscB co-chaperone HscB; Provisional	99.67
PRK01356	166	hscB co-chaperone HscB; Provisional	99.66
PRK00294	173	hscB co-chaperone HscB; Provisional	99.66
KOG0624|consensus	504		99.62
PHA02624	647	large T antigen; Provisional	99.61
PTZ00100	116	DnaJ chaperone protein; Provisional	99.58
KOG0720|consensus	490		99.58
KOG0722|consensus	329		99.58
KOG0550|consensus	486		99.52
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.51
KOG0714|consensus	306		99.49
PRK01773	173	hscB co-chaperone HscB; Provisional	99.47
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.42
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.37
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.27
KOG1150|consensus	250		99.24
KOG0568|consensus	342		98.86
KOG1789|consensus	2235		98.71
KOG0723|consensus	112		98.66
KOG3192|consensus	168		98.24
KOG0431|consensus	453		97.48
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.36
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.25
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.24
KOG0724|consensus	335		93.24
PF13446	62	RPT: A repeated domain in UCH-protein	92.63
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	91.79
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	89.77
KOG3442|consensus	132		87.42

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.5e-29  Score=187.58  Aligned_cols=74  Identities=54%  Similarity=0.836  Sum_probs=71.1

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ..+|||+||||+++||.+|||+|||+|+++||||+++.+++|.++|++|++||+||+||++|+.||+||+....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            46899999999999999999999999999999999997899999999999999999999999999999998876

>KOG0713|consensus

Probab=99.94  E-value=1.5e-27  Score=174.93  Aligned_cols=76  Identities=59%  Similarity=0.937  Sum_probs=72.5

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV   87 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   87 (109)
                      ...+|||+||||+++|+..|||+|||+||+++|||||++++.|.+.|+.|+.||+||+||.+|+.||.+|+.++..
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~   88 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD   88 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999888764

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=3.1e-25  Score=166.96  Aligned_cols=72  Identities=57%  Similarity=0.856  Sum_probs=67.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.++++.++|++|++||+||+||.+|..||++|..++
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~   73 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL   73 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence            379999999999999999999999999999999997667889999999999999999999999999997654

>KOG0716|consensus

Probab=99.91  E-value=3.2e-25  Score=158.57  Aligned_cols=95  Identities=64%  Similarity=1.006  Sum_probs=89.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhhhhcc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGE   93 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~   93 (109)
                      ..++|+||||+++++.++||++||+|++++|||++++++++..+|++|++||+||+||.+|..||.+|..++...+.+++
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~fg~  109 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQFGE  109 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhhcc
Confidence            45799999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcccccc
Q psy4517          94 ENVNTYFMVTSTWCK  108 (109)
Q Consensus        94 ~~~~~~~~~~~~~~~  108 (109)
                      ++...+|.+..+|.+
T Consensus       110 d~~~~~~v~~~~~~~  124 (279)
T KOG0716|consen  110 DSKIIYFVFSSPWIK  124 (279)
T ss_pred             cCcceEEEecchhhh
Confidence            998888887777653

>KOG0712|consensus

Probab=99.89  E-value=1.3e-23  Score=155.18  Aligned_cols=71  Identities=61%  Similarity=0.924  Sum_probs=66.5

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .+..||+||||+++||.+|||+|||+|+++|||||+++   +.++|++|.+||+||+||++|.+||++|..++.
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~   72 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ   72 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            35789999999999999999999999999999999975   789999999999999999999999999988774

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.89  E-value=2.6e-23  Score=158.65  Aligned_cols=75  Identities=55%  Similarity=0.827  Sum_probs=66.8

Q ss_pred             CCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517           8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus         8 ~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      +.-.....|||+||||+++||.+|||+|||+|+++||||++++    .++|++|++||++|+||.+|..||.+|..++.
T Consensus        21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~   95 (421)
T PTZ00037         21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE   95 (421)
T ss_pred             ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence            4444457899999999999999999999999999999999853    48999999999999999999999999876543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=2e-23  Score=157.31  Aligned_cols=71  Identities=42%  Similarity=0.737  Sum_probs=66.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||+||+||.+|..||.+|..++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~   73 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence            479999999999999999999999999999999996 47789999999999999999999999999987543

>KOG0717|consensus

Probab=99.89  E-value=9.7e-24  Score=159.67  Aligned_cols=97  Identities=34%  Similarity=0.523  Sum_probs=82.3

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhh
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE   89 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~   89 (109)
                      +...+.||+||||.++++..+||++||+|+++||||+++.. .+++++|+.|+.||+|||||..|.+||.+....+....
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~   83 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN   83 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence            34567899999999999999999999999999999997654 68999999999999999999999999998876555444


Q ss_pred             hhccccchhhhhhccccc
Q psy4517          90 QFGEENVNTYFMVTSTWC  107 (109)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (109)
                      .-......+.|.+|.+.|
T Consensus        84 s~~~~~~~dlf~ff~~~~  101 (508)
T KOG0717|consen   84 SDTGVQIEDLFQFFTSSC  101 (508)
T ss_pred             CccccchHHHHHHhhhhh
Confidence            444456677777777665

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=2.7e-23  Score=156.66  Aligned_cols=72  Identities=51%  Similarity=0.798  Sum_probs=67.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            479999999999999999999999999999999997667899999999999999999999999999987654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=4.1e-23  Score=156.54  Aligned_cols=69  Identities=45%  Similarity=0.729  Sum_probs=65.9

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      .+|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|+.||++|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            479999999999999999999999999999999998777899999999999999999999999999975

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=6.2e-23  Score=154.37  Aligned_cols=72  Identities=54%  Similarity=0.859  Sum_probs=67.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++.+++.++|++|++||+||+||.+|..||++|..++
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            479999999999999999999999999999999998767889999999999999999999999999997654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=8.5e-23  Score=153.87  Aligned_cols=71  Identities=44%  Similarity=0.737  Sum_probs=66.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||+++. +++.++|++|++||++|+||.+|+.||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~   73 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP   73 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence            4699999999999999999999999999999999874 7788999999999999999999999999997654

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1e-22  Score=154.52  Aligned_cols=71  Identities=52%  Similarity=0.888  Sum_probs=67.0

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+|+.+|..||.+|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            69999999999999999999999999999999998767888999999999999999999999999987654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.5e-22  Score=152.33  Aligned_cols=71  Identities=49%  Similarity=0.750  Sum_probs=67.2

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++||.+|||+|||+|+++||||++++.+++.++|++|++||++|+|+.+|..||.+|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            69999999999999999999999999999999998778889999999999999999999999999987654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.3e-22  Score=153.06  Aligned_cols=71  Identities=55%  Similarity=0.877  Sum_probs=66.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|..||++|..++
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI   74 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence            4799999999999999999999999999999999964 7788999999999999999999999999987654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.4e-22  Score=151.28  Aligned_cols=72  Identities=44%  Similarity=0.796  Sum_probs=66.4

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. ..+.++|++|++||++|+||.+|..||.+|..+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~   75 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE   75 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence            47999999999999999999999999999999998753 5688999999999999999999999999987654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3e-22  Score=151.57  Aligned_cols=72  Identities=51%  Similarity=0.798  Sum_probs=67.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            369999999999999999999999999999999998767889999999999999999999999999987654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.8e-22  Score=151.14  Aligned_cols=72  Identities=49%  Similarity=0.857  Sum_probs=67.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.++||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||.+|..++
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            479999999999999999999999999999999998777889999999999999999999999999987654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.8e-22  Score=151.41  Aligned_cols=72  Identities=51%  Similarity=0.812  Sum_probs=67.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..+++.++|++|++||++|+||.+|..||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            369999999999999999999999999999999998767899999999999999999999999999987654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.9e-22  Score=150.71  Aligned_cols=71  Identities=49%  Similarity=0.776  Sum_probs=66.4

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~   73 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA   73 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence            4799999999999999999999999999999999974 6788999999999999999999999999997654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=5.2e-22  Score=149.91  Aligned_cols=71  Identities=46%  Similarity=0.744  Sum_probs=66.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||++++ +.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~   74 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM   74 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence            5799999999999999999999999999999999974 7789999999999999999999999999987654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=7.1e-22  Score=149.65  Aligned_cols=72  Identities=49%  Similarity=0.799  Sum_probs=66.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh----hCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT----YGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~~~   85 (109)
                      ..|||+||||+++||.+|||+|||+|+++||||+++..+.+.++|++|++||+||+||.+|..||+    +|..++
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            369999999999999999999999999999999997667889999999999999999999999998    876544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=7.3e-22  Score=149.69  Aligned_cols=71  Identities=56%  Similarity=0.901  Sum_probs=66.7

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||++|..++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   71 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP   71 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence            38999999999999999999999999999999998778899999999999999999999999999987543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=8.2e-22  Score=148.47  Aligned_cols=72  Identities=50%  Similarity=0.849  Sum_probs=67.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~   74 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF   74 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence            479999999999999999999999999999999997667889999999999999999999999999987654

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=8.3e-22  Score=148.98  Aligned_cols=71  Identities=55%  Similarity=0.854  Sum_probs=66.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.++||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||.+|..++
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~   72 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF   72 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence            4799999999999999999999999999999999974 7788999999999999999999999999987654

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.2e-21  Score=143.49  Aligned_cols=70  Identities=56%  Similarity=0.874  Sum_probs=65.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG   84 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   84 (109)
                      ..|||+||||+++||.++||+|||+|++++|||+++ .+.+.++|++|++||++|+|+.+|..||.+|..+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            479999999999999999999999999999999996 4778999999999999999999999999998753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=9.2e-22  Score=148.48  Aligned_cols=72  Identities=47%  Similarity=0.727  Sum_probs=66.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||.+|..++.
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~   74 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN   74 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence            3699999999999999999999999999999999874 67889999999999999999999999999876543

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.86  E-value=1.5e-21  Score=113.36  Aligned_cols=63  Identities=52%  Similarity=0.812  Sum_probs=59.4

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517          16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKRNIYD   78 (109)
Q Consensus        16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd   78 (109)
                      |||+||||+++++.++|+++|+++++.+|||+..+.. .+.+.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999987654 58899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.2e-21  Score=148.03  Aligned_cols=68  Identities=47%  Similarity=0.676  Sum_probs=64.7

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      .|||+||||+++|+.++||+|||+|+++||||+++ .+++.++|++|++||+||+||.+|..||.+|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            68999999999999999999999999999999997 477899999999999999999999999999864

>KOG0691|consensus

Probab=99.85  E-value=2e-21  Score=142.02  Aligned_cols=75  Identities=47%  Similarity=0.734  Sum_probs=71.0

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhh
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVA   88 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   88 (109)
                      ..|||+||||+.+++..+|+++|+..++++||||++++|.+.++|+.+.+||+||+|+..|..||.++..+....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            579999999999999999999999999999999999999999999999999999999999999999987776544

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.85  E-value=3.7e-21  Score=156.02  Aligned_cols=80  Identities=31%  Similarity=0.482  Sum_probs=71.2

Q ss_pred             CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517           6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus         6 ~~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +.|.......+||+||||+++||..+||+|||+|++++|||++++ ..+.++|+.|++||++|+||.+|..||.+|..+.
T Consensus       564 ~~~t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        564 AAPTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             ccccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            344444456899999999999999999999999999999999986 4688899999999999999999999999998765


Q ss_pred             h
Q psy4517          86 Y   86 (109)
Q Consensus        86 ~   86 (109)
                      .
T Consensus       643 ~  643 (1136)
T PTZ00341        643 K  643 (1136)
T ss_pred             C
Confidence            4

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.85  E-value=2.2e-21  Score=145.32  Aligned_cols=70  Identities=56%  Similarity=0.842  Sum_probs=65.2

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      |||+||||+++|+.++||+||++++++||||+++ .+.+.++|++|++||++|+|+.+|..||.+|..+..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~   70 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN   70 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence            6999999999999999999999999999999996 467889999999999999999999999999876543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.9e-21  Score=144.94  Aligned_cols=72  Identities=53%  Similarity=0.821  Sum_probs=67.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++.+++.++|++|++||++|+||.+|..||.+|..++
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~   75 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV   75 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence            479999999999999999999999999999999998778899999999999999999999999999987653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.3e-21  Score=143.89  Aligned_cols=71  Identities=46%  Similarity=0.754  Sum_probs=66.1

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++|+.+|||+|||+|++++|||+++... ++.++|++|++||++|+|+.+|..||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~   74 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF   74 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence            69999999999999999999999999999999987543 788999999999999999999999999987654

>KOG0718|consensus

Probab=99.84  E-value=4.3e-21  Score=145.68  Aligned_cols=75  Identities=51%  Similarity=0.795  Sum_probs=69.0

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN---PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .++.+||.+|||+++||.+||++|||++++.|||||..+.   ..|++.|+.|.+||+||+||.+|.+||.+|..|+.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            4567999999999999999999999999999999998754   35788999999999999999999999999999886

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=8.6e-21  Score=143.05  Aligned_cols=70  Identities=43%  Similarity=0.703  Sum_probs=65.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++||.+|||+|||+++++||||+++ ...+.++|++|++||++|+|+.+|..||.+|..++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            69999999999999999999999999999999986 46688899999999999999999999999987654

>KOG0715|consensus

Probab=99.83  E-value=1.6e-20  Score=137.49  Aligned_cols=70  Identities=47%  Similarity=0.722  Sum_probs=65.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG   84 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   84 (109)
                      ..|||+||||+++|+..|||.||++|+++||||.+.. .++.++|++|.+||+||+|+.+|..||..+..+
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3499999999999999999999999999999999975 599999999999999999999999999987764

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.6e-20  Score=140.33  Aligned_cols=69  Identities=49%  Similarity=0.783  Sum_probs=65.0

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG   84 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   84 (109)
                      .|||+||||+++|+.++||+||++|++++|||+++ ...+.++|++|++||++|+||.+|..||.+|..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            58999999999999999999999999999999997 4778899999999999999999999999998754

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.9e-20  Score=140.28  Aligned_cols=70  Identities=46%  Similarity=0.811  Sum_probs=65.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .|||+||||+++++.++||+|||+|++++|||+++. ..+.++|++|++||++|+||.+|..||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~   72 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV   72 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence            699999999999999999999999999999999864 6788999999999999999999999999987644

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.81  E-value=3.5e-20  Score=136.59  Aligned_cols=67  Identities=37%  Similarity=0.650  Sum_probs=63.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      .|||+||||++++|.++||+|||+|++++|||++.. +.+.++|++|++||++|+|+.+|..||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            699999999999999999999999999999999863 6789999999999999999999999999874

>KOG0719|consensus

Probab=99.80  E-value=1.1e-19  Score=127.99  Aligned_cols=71  Identities=45%  Similarity=0.767  Sum_probs=65.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKN--PNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG   84 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   84 (109)
                      ..|+|+||||.++|+..+|++||+++++++|||++  ....+++++|+.++.||+||+|..+|..||.-|...
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            34999999999999999999999999999999999  334578999999999999999999999999988776

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.80  E-value=2.7e-19  Score=102.35  Aligned_cols=58  Identities=60%  Similarity=0.914  Sum_probs=54.1

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhcCch
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN-NPEAAEKFKEINRAHSTLSDQT   72 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~-~~~~~~~f~~i~~Ay~~L~d~~   72 (109)
                      .+||+||||+++++.++||++|+++++.+|||++++ .+.+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            479999999999999999999999999999999975 4778899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.78  E-value=6.7e-19  Score=99.01  Aligned_cols=55  Identities=67%  Similarity=1.023  Sum_probs=51.7

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q psy4517          16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD   70 (109)
Q Consensus        16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d   70 (109)
                      |||+||||+++++.++||++|+++++++|||+.++...+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999997556788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721|consensus

Probab=99.77  E-value=1e-18  Score=121.90  Aligned_cols=72  Identities=38%  Similarity=0.616  Sum_probs=66.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .-|+||||||++++|..|||+|||+|++++||||.+...+..+.|..|.+||+.|+|+..|..|..+|.-..
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            468999999999999999999999999999999987656677889999999999999999999999987654

>PHA03102 Small T antigen; Reviewed

Probab=99.76  E-value=6e-19  Score=118.40  Aligned_cols=69  Identities=26%  Similarity=0.345  Sum_probs=62.9

Q ss_pred             ccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          14 GDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        14 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .+.+|+||||+++|  |..+||+|||++++++|||++++    .++|++|++||++|+++..|..||.+|.....
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            35789999999999  99999999999999999999864    47999999999999999999999999876644

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.75  E-value=2.5e-18  Score=137.20  Aligned_cols=71  Identities=46%  Similarity=0.764  Sum_probs=66.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .|||+||||+++|+..+||++||+|++++|||++++ +.+.++|++|++||++|+||.+|..||.+|..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            689999999999999999999999999999999875 77888999999999999999999999999876654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=9.4e-18  Score=115.66  Aligned_cols=69  Identities=55%  Similarity=0.836  Sum_probs=64.6

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE-AAEKFKEINRAHSTLSDQTKRNIYDTY   80 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   80 (109)
                      ....+||+||||+++++..+|+++|+++++++|||+++..+. +.+.|..|++||++|+|+..|..||..
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            345789999999999999999999999999999999987775 899999999999999999999999986

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.69  E-value=9.2e-17  Score=109.89  Aligned_cols=66  Identities=27%  Similarity=0.432  Sum_probs=57.9

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517          15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTY   80 (109)
Q Consensus        15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   80 (109)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+.+.     +.+.+..|++||++|+||.+|..|+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            489999999995  688999999999999999999765432     567899999999999999999999853

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.67  E-value=3.2e-16  Score=107.66  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=57.7

Q ss_pred             ccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHHH-----HHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517          14 GDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPEA-----AEKFKEINRAHSTLSDQTKRNIYDT   79 (109)
Q Consensus        14 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~   79 (109)
                      ..|||+||||++.  ++..+|+++|+++++++|||+..+.+..     .+.+..|++||++|+||.+|..|..
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3799999999995  6899999999999999999998654433     3456899999999999999999985

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=2.8e-16  Score=107.06  Aligned_cols=67  Identities=36%  Similarity=0.451  Sum_probs=57.9

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+..+   +.+.+..|++||+||+||.+|..|....
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            589999999996  789999999999999999999864322   3356889999999999999999998544

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=4e-16  Score=106.85  Aligned_cols=69  Identities=25%  Similarity=0.420  Sum_probs=60.3

Q ss_pred             CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      ...+||++|||++.  .+..+|+++|+++++++|||+..+.+.     +.+.+..|++||+||+||.+|..|+...
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            45799999999996  678999999999999999999865433     5677999999999999999999999543

>KOG0624|consensus

Probab=99.62  E-value=8.3e-16  Score=114.56  Aligned_cols=70  Identities=37%  Similarity=0.594  Sum_probs=63.4

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSDQTKRNIYDTY   80 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   80 (109)
                      .+..+|||.||||.++|+..||.+|||+++.+||||-..+.+   .+..+|.-|..|-+||+||++|+.+|..
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            356789999999999999999999999999999999987543   3678899999999999999999999973

>PHA02624 large T antigen; Provisional

Probab=99.61  E-value=1.1e-15  Score=120.47  Aligned_cols=87  Identities=23%  Similarity=0.380  Sum_probs=69.3

Q ss_pred             CccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhhh
Q psy4517          13 SGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQ   90 (109)
Q Consensus        13 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~   90 (109)
                      +..++|+||||+++|  +..+||+|||++++++|||++++    .++|++|++||++|+|+.+|..|. ++.........
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~-fd~~~~~~v~~   83 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS-FGTQDSSEIPT   83 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc-cccccccCCCC
Confidence            456899999999999  99999999999999999999754    578999999999999999999993 22221111234


Q ss_pred             hccccchhhhhhcc
Q psy4517          91 FGEENVNTYFMVTS  104 (109)
Q Consensus        91 ~~~~~~~~~~~~~~  104 (109)
                      ++...|..||..++
T Consensus        84 ~~~~~w~~ww~~f~   97 (647)
T PHA02624         84 YGTPEWEQWWEEFN   97 (647)
T ss_pred             CccccHHHHHHHhh
Confidence            46667777776655

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.58  E-value=3.8e-15  Score=95.67  Aligned_cols=53  Identities=28%  Similarity=0.442  Sum_probs=48.1

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS   69 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~   69 (109)
                      +..++|+||||++++|.++|+++||++++++|||++++    .+.+.+|++||++|.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999753    467889999999985

>KOG0720|consensus

Probab=99.58  E-value=3e-15  Score=113.83  Aligned_cols=68  Identities=38%  Similarity=0.536  Sum_probs=64.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      ..|.|.+|||+.+++.++||+.||+++...||||+- .+.|.|.|+.++.||++|+|+++|..||....
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~  301 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK  301 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            689999999999999999999999999999999997 69999999999999999999999999997543

>KOG0722|consensus

Probab=99.58  E-value=1.3e-15  Score=108.93  Aligned_cols=71  Identities=32%  Similarity=0.521  Sum_probs=64.4

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      ...+|+|+||||++.++..+|.+|||+|++++|||++.+ +++.+.|..|..||++|.|...|..||-..+.
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldh  100 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDH  100 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence            456899999999999999999999999999999999986 66679999999999999999999999965443

>KOG0550|consensus

Probab=99.52  E-value=1.2e-14  Score=109.84  Aligned_cols=69  Identities=45%  Similarity=0.647  Sum_probs=64.5

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      ...+||.||||...++..+|+++||++++.+|||++.++ .+++.+|++|-+||.+|+||.+|..||+.-
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            457999999999999999999999999999999999877 788899999999999999999999999743

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.51  E-value=2.6e-14  Score=103.79  Aligned_cols=59  Identities=31%  Similarity=0.442  Sum_probs=52.3

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhcC
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-------PEAAEKFKEINRAHSTLSD   70 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-------~~~~~~f~~i~~Ay~~L~d   70 (109)
                      .+..++|+||||++++|.++||++||++++++|||+..+.       +.+.++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            4558999999999999999999999999999999996421       3578999999999999975

>KOG0714|consensus

Probab=99.49  E-value=2.8e-14  Score=102.39  Aligned_cols=73  Identities=56%  Similarity=0.889  Sum_probs=64.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ..++|.||||.+.++.++|++||+.+++.+|||+++.. ..+..+|++|.+||++|+|+.+|..||.++..+..
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~   75 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK   75 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence            46899999999999999999999999999999997754 24555899999999999999999999999974443

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.47  E-value=1.9e-13  Score=93.65  Aligned_cols=65  Identities=23%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517          15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDT   79 (109)
Q Consensus        15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~   79 (109)
                      .|||++|||++.  .+...++++|+++++.+|||+..+..     .+.+....||+||.||+||.+|..|=.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            589999999995  89999999999999999999986553     245668999999999999999999964

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.42  E-value=2.3e-13  Score=103.87  Aligned_cols=72  Identities=38%  Similarity=0.669  Sum_probs=64.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN-----NPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .-|+||||||+.+++..+||++||+|+.++||||.+.     .++.++.+.+|++||..|+|...|..|-.+|.-..
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            3589999999999999999999999999999999764     24677889999999999999999999998876543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=5.5e-13  Score=96.43  Aligned_cols=92  Identities=32%  Similarity=0.387  Sum_probs=73.2

Q ss_pred             cCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhh
Q psy4517          15 DSLYVILELPK---TATPEEIKKQYRKMALKYHPDKN--PNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE   89 (109)
Q Consensus        15 ~~~y~iLgv~~---~as~~eIk~ayr~l~~~~hPDk~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~   89 (109)
                      .|+|.+|||+.   -+++.+|.++.++.+.+||||+.  +++-.+.+.|..|+.||+||+|+..|..||+..-.....++
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advppp  122 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPPP  122 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCCc
Confidence            68999999997   68899999999999999999996  23456788999999999999999999999975433322222


Q ss_pred             hhccccchhhhhhcccccc
Q psy4517          90 QFGEENVNTYFMVTSTWCK  108 (109)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~  108 (109)
                      .  ....+.||-.+.|+|.
T Consensus       123 ~--~~t~~~Ffe~w~pvFe  139 (379)
T COG5269         123 R--IYTPDEFFEVWEPVFE  139 (379)
T ss_pred             c--CCCchhHHHHHHHHHH
Confidence            2  2235788888888875

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.27  E-value=1.5e-11  Score=83.17  Aligned_cols=56  Identities=25%  Similarity=0.366  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          27 ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        27 as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      .+..+|+++|+++++++|||+..+..     .+.+.+..|++||++|+||.+|..|.....
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            47889999999999999999965432     256789999999999999999999996543

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150|consensus

Probab=99.24  E-value=2.4e-11  Score=84.50  Aligned_cols=66  Identities=30%  Similarity=0.503  Sum_probs=59.8

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYD   78 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd   78 (109)
                      -+-|+|+||.|.+..+.++||+.||+|+...|||+++++ +.|...|-.|.+||..|.|+..|..-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            567999999999999999999999999999999999987 678888999999999999998665443

>KOG0568|consensus

Probab=98.86  E-value=3.2e-09  Score=75.66  Aligned_cols=55  Identities=24%  Similarity=0.483  Sum_probs=49.8

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH-HhcC
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS-TLSD   70 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~-~L~d   70 (109)
                      ..||.||||..+++.++++.+|..|++++|||.+. .+...+.|.+|.+||. +|+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999985 4667789999999998 7764

>KOG1789|consensus

Probab=98.71  E-value=2.8e-08  Score=82.80  Aligned_cols=60  Identities=42%  Similarity=0.642  Sum_probs=51.6

Q ss_pred             CCCCCCCccCcchhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy4517           7 RRKMSTSGDSLYVILELPK----TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS   69 (109)
Q Consensus         7 ~~~~~~~~~~~y~iLgv~~----~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~   69 (109)
                      ..++..+..+.|+||.|+-    ...++.||++|++|+.+|||||+   ++..+.|..+++||+.|+
T Consensus      1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHH
Confidence            3456677888999999985    33558899999999999999998   567899999999999997

>KOG0723|consensus

Probab=98.66  E-value=6.9e-08  Score=60.89  Aligned_cols=56  Identities=25%  Similarity=0.348  Sum_probs=47.4

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQ   71 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~   71 (109)
                      .+.+..-.||||+++++.+.||+++|++....|||++++    .-.-..|+||+++|...
T Consensus        53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhcc
Confidence            345667789999999999999999999999999999986    23445699999999754

>KOG3192|consensus

Probab=98.24  E-value=2.1e-06  Score=57.74  Aligned_cols=66  Identities=29%  Similarity=0.478  Sum_probs=55.0

Q ss_pred             CccCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517          13 SGDSLYVILELPK--TATPEEIKKQYRKMALKYHPDKNPNN-----PEAAEKFKEINRAHSTLSDQTKRNIYD   78 (109)
Q Consensus        13 ~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~hPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd   78 (109)
                      +..+||.++|...  -..++.++.-|....+++|||+.+..     ..+.+...++++||.+|.||-+|+.|=
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4568999998765  45777788899999999999995432     357788999999999999999999995

>KOG0431|consensus

Probab=97.48  E-value=0.00014  Score=56.65  Aligned_cols=47  Identities=34%  Similarity=0.522  Sum_probs=35.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHh
Q psy4517          22 ELPKTATPEEIKKQYRKMALKYHPDKNPNNP-------EAAEKFKEINRAHSTL   68 (109)
Q Consensus        22 gv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-------~~~~~f~~i~~Ay~~L   68 (109)
                      ++..-++..+||++||+.++.+||||.+...       .+++.|-.+++||...
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            4555689999999999999999999976542       2455566666666543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00016  Score=49.61  Aligned_cols=67  Identities=31%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             CcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          16 SLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        16 ~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      +++.++|..+.  ...+.++..|+.+.+.+|||+......     +.+.+..++.||.+|.+|..|..|=....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            35556666653  355669999999999999999875533     44679999999999999999999975433

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.25  E-value=0.00096  Score=43.69  Aligned_cols=57  Identities=23%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQT   72 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~   72 (109)
                      .+......||||++..+.++|.+.|.+|-...+|+++++    .-.-..|..|.+.|....
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence            444567899999999999999999999999999999875    344556777887776443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00026  Score=48.52  Aligned_cols=54  Identities=31%  Similarity=0.489  Sum_probs=45.9

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHh
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-------PEAAEKFKEINRAHSTL   68 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-------~~~~~~f~~i~~Ay~~L   68 (109)
                      .+.|.+||+....+..+|+++|+++....|||+-...       ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6889999999999999999999999999999994321       24667889999998753

>KOG0724|consensus

Probab=93.24  E-value=0.1  Score=38.93  Aligned_cols=56  Identities=36%  Similarity=0.570  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          26 TATPEEIKKQYRKMALKYHPDKNPN----NPEAAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        26 ~as~~eIk~ayr~l~~~~hPDk~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      .++..+|..+|+..+...||++...    .....+.++.|.+||.+|++...|...|.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            3577889999999999999998741    1245677999999999999866655666544

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.63  E-value=0.29  Score=27.63  Aligned_cols=28  Identities=14%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHH
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMAL   41 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~   41 (109)
                      -.+.|++|||+++.+.+.|-.+|+....
T Consensus         4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    4 VEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999877

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=91.79  E-value=0.57  Score=32.79  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q psy4517          24 PKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQ   71 (109)
Q Consensus        24 ~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~   71 (109)
                      +++||.+||.+|+.++..+|--|        .+.-..|..||+.|.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHH
Confidence            47899999999999999999322        24556789999976533

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=89.77  E-value=1.3  Score=28.32  Aligned_cols=48  Identities=21%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCHHH----HHHHHHHHHHHHHhcCch
Q psy4517          25 KTATPEEIKKQYRKMALKYHPDKNPNNPEA----AEKFKEINRAHSTLSDQT   72 (109)
Q Consensus        25 ~~as~~eIk~ayr~l~~~~hPDk~~~~~~~----~~~f~~i~~Ay~~L~d~~   72 (109)
                      +..+..+++.+.|.+.++.|||..+..++.    .+-++.++.-.+.|..+.
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            345778899999999999999987665542    234666666666666543

>KOG3442|consensus

Probab=87.42  E-value=1.4  Score=28.85  Aligned_cols=38  Identities=21%  Similarity=0.241  Sum_probs=33.1

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN   50 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~   50 (109)
                      +-..--.||+|++..+.++|.+.|..|-....+.++++
T Consensus        57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS   94 (132)
T KOG3442|consen   57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS   94 (132)
T ss_pred             cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence            34456789999999999999999999999998888864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-39
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-17
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		5e-17
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-15
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-15
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-15
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		4e-15
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		8e-15
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-14
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-14
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-14
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-14
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-13
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-13
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-12
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		3e-11
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		7e-11
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-10
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		3e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		5e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		8e-05
1xi5_J	114	Clathrin D6 Coat With Auxilin J-Domain Length = 114		1e-04
1nz6_A	101	Crystal Structure Of Auxilin J-Domain Length = 101		2e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-04
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		4e-04
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-04

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 84/95 (88%)
Query: 7   RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 9   QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68
Query: 67  TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
            L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+
Sbjct: 69  ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFV 103

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKR 74
          S Y IL++P++A+ ++IKK YR+ AL++HPDKNP+N E AE KFKE+  A+  LSD+ KR
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 75 NIYDTYGSLGL 85
           IYD YG  GL
Sbjct: 63 EIYDRYGREGL 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
          Y +L++P+ A+ E IKK YRK+ALK+HPDKNP N E AE +FK++  A+  LSD  KR+I
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 77 YDTYGS 82
          YD YGS
Sbjct: 72 YDRYGS 77

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
          + Y +L + KTA+  EI++ ++K+ALK HPDKNPNNP A   F +INRA+  L D+  R 
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 76 IYDTYGSLGL 85
           YD YG  GL
Sbjct: 63 KYDKYGEKGL 72

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
          G   Y  L L + A+ EEIK+ YR+ AL+YHPDKN   P A EKFKEI  A+  LSD  K
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 74 RNIYDTYGSLGL 85
          R I+D YG  GL
Sbjct: 61 REIFDRYGEEGL 72

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
          + Y +L + KTA+  EI++ ++K+ALK HPDKNPNNP A   F +INRA+  L D+  R 
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 76 IYDTYGSLGL 85
           YD YG  GL
Sbjct: 82 KYDKYGEKGL 91

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
          Y +L +  +A+PE+IKK YRK+AL++HPDKNP+N E AE KFK ++ A+  LSD  KR++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 77 YDTYG 81
          YD  G
Sbjct: 72 YDRAG 76

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
           +SGD  Y IL +P+ A+ +EIKK Y ++A KYHPD N ++P+A EKF ++  A+  LSD
Sbjct: 4  GSSGD-YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62
Query: 71 QTKRNIYDTYGS 82
          + KR  YD YGS
Sbjct: 63 EVKRKQYDAYGS 74

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA   EI+K Y+++A+KYHPD+N  + EA  KFKEI  A+  L+D  KR  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
          D YG
Sbjct: 66 DQYG 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA   EI+K Y+++A+KYHPD+N  + EA  KFKEI  A+  L+D  KR  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
          D YG
Sbjct: 66 DQYG 69

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA   EI+K Y+++A+KYHPD+N  + EA  KFKEI  A+  L+D  KR  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
          D YG
Sbjct: 66 DQYG 69

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L +   AT EE+KK YRK+ALKYHPDKNPN     EKFK+I++A+  LSD  KR +Y
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELY 65
Query: 78 DTYG 81
          D  G
Sbjct: 66 DKGG 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L +   A+  E+KK YRKMALK+HPDKNP+    AE+FK+I++A+  LSD+ KR IY
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIY 67
Query: 78 DTYG 81
          D  G
Sbjct: 68 DQGG 71

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +PK+A+  +IKK + K+A+KYHPDKN  +P+A  KF+EI  A+ TLSD  +R  Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 78 DTYG 81
          DT G
Sbjct: 69 DTLG 72

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
           +SGD  Y IL + + A+ E++KK YR++ALK+HPDKN + P A E FK I  A++ LS+
Sbjct: 4  GSSGD-YYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSN 61
Query: 71 QTKRNIYDTYGS 82
            KR  YD +GS
Sbjct: 62 PEKRKQYDQFGS 73

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
          LY +L +  +A  +E+KK YRK ALKYHPDK   +    EKFKEI+ A   L+D  KR I
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREI 66
Query: 77 YDTYG 81
          YD YG
Sbjct: 67 YDQYG 71

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L + +TA+  +IKK Y+K+A ++HPDKN  +P A ++F +I++A+  LS++ KR  Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 78 DTYGS 82
          D YGS
Sbjct: 79 DHYGS 83

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
          +LY +L +P TAT  +IK  Y +    YHPD+N  + EAAE+F  I++A+  L   T R 
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 76 IYD 78
           YD
Sbjct: 78 KYD 80

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y +L   + ++ E+I  +++  AL+ HPDK+P NP+A E F+++ +A   L+++  R  Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 78 DTY 80
          D +
Sbjct: 83 DHW 85

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y I+ +  T   + IK  YR++A KYHPD +   P+A  +FKE+  A   LSD+ +R  Y
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 78 D 78
          D
Sbjct: 67 D 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +  T   + IK  YR++A KYHPD +  N +A  KFK++  A   L D+ +R  Y
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 78 D 78
          D
Sbjct: 90 D 90

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQ 71
          Y IL    +A   ++K++Y+K+ L YHPDK   +       E  +KF EI++A   L ++
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 72 TKRNIYD 78
            +  YD
Sbjct: 73 ETKREYD 79

>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain Length = 114

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 13  SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLS 69
           +G++ +  + +    TPE++KK YRK  L  HPDK    P    A   F E+N A S   
Sbjct: 47  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 106
Query: 70  DQTKRNIY 77
           +Q ++ +Y
Sbjct: 107 NQGQKPLY 114

>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain Length = 101

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 27  ATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSDQTKRNIY 77
            TPE++KK YRK  L  HPDK    P    A   F E+N A S   +Q ++ +Y
Sbjct: 48  VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQ 71
          Y IL    +A   ++K++Y+K+ L YHPDK   +       E  +KF EI++A   L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 72 TKRNIYD 78
            +  YD
Sbjct: 79 ETKKKYD 85

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKR 74
           Y IL + + A  +EI K YRK+AL++HPD   N     +A +KF +I  A   LSD   R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 75  NIYD 78
             +D
Sbjct: 445 KKFD 448

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 15 DSLYVILELPKTA-TPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSD 70
          ++ Y +LE+ +     +++ K YR +A K+HPD+  N  E   A E+F+ I  A+ TL D
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
Query: 71 QTKRNIYDTY 80
             +  YD Y
Sbjct: 75 DEAKTNYDYY 84

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKR 74
           Y IL + + A  +EI K YRK+AL++HPD   N     +A +KF +I  A   LSD   R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 75  NIYD 78
             +D
Sbjct: 445 KKFD 448

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	8e-51
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-33
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-32
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-32
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-32
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	4e-32
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	5e-32
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-32
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-31
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	4e-31
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	5e-31
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-30
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	5e-30
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-29
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	4e-29
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-28
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-28
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-28
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-26
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	4e-26
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-25
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-25
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-24
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-17
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-16
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	9e-16
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-15
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-15
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-14
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	2e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	9e-12
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-11
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	1e-10

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  154 bits (392), Expect = 8e-51
 Identities = 72/96 (75%), Positives = 84/96 (87%)

Query: 6   PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
            +R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH
Sbjct: 8   RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67

Query: 66  STLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
           + L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+
Sbjct: 68  AILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFV 103

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  113 bits (283), Expect = 5e-33
 Identities = 37/84 (44%), Positives = 51/84 (60%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
           Y +L + KTA+  EI++ ++K+ALK HPDKNPNNP A   F +INRA+  L D+  R  Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 78  DTYGSLGLYVAEQFGEENVNTYFM 101
           D YG  GL   +    E+ + Y  
Sbjct: 65  DKYGEKGLEDNQGGQYESWSYYRY 88

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  109 bits (273), Expect = 2e-32
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 9  KMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTL 68
          +   + D  Y +L   + ++ E+I  +++  AL+ HPDK+P NP+A E F+++ +A   L
Sbjct: 15 RSEDTED-YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73

Query: 69 SDQTKRNIYDTYGSLGLYVAEQFGEE 94
          +++  R  YD +    + +  Q  E 
Sbjct: 74 TNEESRARYDHWRRSQMSMPFQQWEA 99

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  106 bits (268), Expect = 3e-32
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y  L L + A+ EEIK+ YR+ AL+YHPDKN   P A EKFKEI  A+  LSD  KR I+
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIF 64

Query: 78 DTYGSLGL 85
          D YG  GL
Sbjct: 65 DRYGEEGL 72

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  107 bits (269), Expect = 3e-32
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
          Y IL++P++A+ ++IKK YR+ AL++HPDKNP+N E AE KFKE+  A+  LSD+ KR I
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 77 YDTYGSLGL 85
          YD YG  GL
Sbjct: 65 YDRYGREGL 73

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  107 bits (269), Expect = 4e-32
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
          LY +L +P TAT  +IK  Y +    YHPD+N  + EAAE+F  I++A+  L   T R  
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 77 YDTYG 81
          YD   
Sbjct: 79 YDRGL 83

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  106 bits (267), Expect = 5e-32
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
          Y +L++P+ A+ E IKK YRK+ALK+HPDKNP N E AE +FK++  A+  LSD  KR+I
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 77 YDTYGSLGL 85
          YD YGS   
Sbjct: 72 YDRYGSGPS 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  106 bits (268), Expect = 7e-32
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + KTA   EI+K Y+++A+KYHPD+N  + EA  KFKEI  A+  L+D  KR  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 78 DTYG 81
          D YG
Sbjct: 66 DQYG 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  105 bits (264), Expect = 2e-31
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
          Y +L +  +A+PE+IKK YRK+AL++HPDKNP+N E AE KFK ++ A+  LSD  KR++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 77 YDTYGSLGL 85
          YD  G    
Sbjct: 72 YDRAGCDSW 80

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  111 bits (279), Expect = 4e-31
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +  T   + IK  YR++A KYHPD +    +A  KFK++  A   L D+ +R  Y
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEY 89

Query: 78 DTYGSLG 84
          D      
Sbjct: 90 DQLWQHR 96

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  104 bits (261), Expect = 5e-31
 Identities = 33/67 (49%), Positives = 46/67 (68%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +P+ A+ +EIKK Y ++A KYHPD N ++P+A EKF ++  A+  LSD+ KR  Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 78 DTYGSLG 84
          D YGS  
Sbjct: 70 DAYGSGP 76

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  102 bits (257), Expect = 2e-30
 Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 8  RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
          + +S      Y +L + +TA+  +IKK Y+K+A ++HPDKN  +P A ++F +I++A+  
Sbjct: 10 QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEI 68

Query: 68 LSDQTKRNIYDTYGSLGL 85
          LS++ KR  YD YGS   
Sbjct: 69 LSNEEKRTNYDHYGSGPS 86

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  103 bits (259), Expect = 5e-30
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQ 71
           Y IL    +A   ++K++Y+K+ L YHPDK   +       E  +KF EI++A   L ++
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 72  TKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
             +  YD              +  V    M
Sbjct: 73  ETKREYDLQRCEDDLRNVGPVDAQVYLEEM 102

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  100 bits (250), Expect = 2e-29
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL + + A+ E++KK YR++ALK+HPDKN   P A E FK I  A++ LS+  KR  Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQY 68

Query: 78 DTYGSLGL 85
          D +GS   
Sbjct: 69 DQFGSGPS 76

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 98.8 bits (247), Expect = 4e-29
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 8  RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
            M       Y +L +   A+  E+KK YRKMALK+HPDKNP+    AE+FK+I++A+  
Sbjct: 2  NAMVKETG-YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEV 57

Query: 68 LSDQTKRNIYDTYG 81
          LSD+ KR IYD  G
Sbjct: 58 LSDEKKRQIYDQGG 71

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 98.6 bits (246), Expect = 1e-28
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
          LY +L +  +A  +E+KK YRK ALKYHPDK   +    EKFKEI+ A   L+D  KR I
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREI 66

Query: 77 YDTYGSLGL 85
          YD YG    
Sbjct: 67 YDQYGLEAA 75

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 98.7 bits (246), Expect = 1e-28
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQ 71
          Y IL    +A   ++K++Y+K+ L YHPDK   +       E  +KF EI++A   L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 72 TKRNIYDTYGSLG 84
            +  YD   S  
Sbjct: 79 ETKKKYDLQRSGP 91

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 97.4 bits (243), Expect = 3e-28
 Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          Y IL +PK+A+  +IKK + K+A+KYHPDKN  +P+A  KF+EI  A+ TLSD  +R  Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68

Query: 78 DTYG 81
          DT G
Sbjct: 69 DTLG 72

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 92.9 bits (231), Expect = 3e-26
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 18 YVILELPKTA-TPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTK 73
          Y +LE+ +     +++ K YR +A K+HPD+  N  E   A E+F+ I  A+ TL D   
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 74 RNIYDTYG 81
          +  YD Y 
Sbjct: 78 KTNYDYYL 85

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 94.2 bits (234), Expect = 4e-26
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 17 LYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
          L  +L L ++A      ++K Y K   ++HPDK  +     EK K++N  +  + D  K 
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKY 68

Query: 75 NIYDTYGSLG 84
               +G   
Sbjct: 69 AHQPDFGGFW 78

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 90.9 bits (226), Expect = 1e-25
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
            ++E        E KK  R++ LK+HPDKNP N + A   FK +    + L    K+  
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAF 75

Query: 77 YDTYGSLGL 85
           D       
Sbjct: 76 LDQNADRAS 84

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 90.2 bits (224), Expect = 2e-25
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
          + +L +   A+ +E+ K YRK+A+  HPDK    P + + FK +  A + L    K    
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGPS 88

Query: 78 D 78
           
Sbjct: 89 S 89

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 88.3 bits (219), Expect = 2e-24
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 9  KMSTSGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
           M      L  +L L ++A      ++K Y K   ++HPDK  +     EK K++N  + 
Sbjct: 2  HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYK 57

Query: 67 TLSDQTKRNIYDTYGS 82
           + D  K      +G 
Sbjct: 58 KMEDGVKYAHQPDFGG 73

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 91.7 bits (227), Expect = 3e-23
 Identities = 37/90 (41%), Positives = 52/90 (57%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
           Y +L + KTA+  EI++ ++K+ALK HPDKNPNNP A   F +INRA+  L D+  R  Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 78  DTYGSLGLYVAEQFGEENVNTYFMVTSTWC 107
           D YG  GL   +    E+ + Y      + 
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFGIYD 113

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 9e-17
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 18  YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKR 74
           Y IL + + A  +EI K YRK+AL++HPD   N  E   A +KF +I  A   LSD   R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 75  NIYD 78
             +D
Sbjct: 445 KKFD 448

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 69.5 bits (169), Expect = 3e-16
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 13  SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
           +G++ +  + +    TPE++KK YRK  L  HPDK    P    A   F E+N A S   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174

Query: 70  DQTKRNIY 77
           +Q ++ +Y
Sbjct: 175 NQGQKPLY 182

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 67.7 bits (165), Expect = 1e-15
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSD 70
          + +  LP       + +  +++ +  +YHPDK  +  +     A ++   IN+A  TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 71 QTKRNIYD 78
             R  Y 
Sbjct: 64 PLMRAEYL 71

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 64.2 bits (156), Expect = 2e-15
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 17 LYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
          L  +L+LP+        +++ Y++ +L  HPDK  +        +E+N    T   +   
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYN 68

Query: 75 NIYDTYGS 82
             +  G+
Sbjct: 69 LRMNLGGT 76

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 63.1 bits (153), Expect = 6e-14
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 29 PEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVA 88
             ++K+YR++  ++HPD        +E+   +N+A+ TL D  +R+ Y       + + 
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLT 88

Query: 89 EQFGEEN 95
          ++     
Sbjct: 89 QEQTSNE 95

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 59.6 bits (144), Expect = 2e-13
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
          +G++ +  + +    TPE++KK YRK  L  HP K    P    A   F E+N A S   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 70 DQ 71
          +Q
Sbjct: 91 NQ 92

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 55.1 bits (133), Expect = 9e-12
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 18 YVILEL-PKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
            IL L   T T +++K+ +RK+ L  HPDK  +         +IN A   L  +   
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 18  YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSD 70
           + +++  ++      +++ +Y+++    HPD      +     + +    +N A+ TL  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 71  QTKRNIYD 78
              R +Y 
Sbjct: 106 PLSRGLYL 113

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 15  DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE-------AAEKFKEINRAHST 67
            S +  + L        ++K Y++  L  HPDK             A + F+ +  A   
Sbjct: 40  GSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDH 99

Query: 68  LSDQ 71
            +  
Sbjct: 100 FNTL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.95
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.92
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.91
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.91
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.91
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.91
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.9
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.9
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.9
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.9
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.9
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.89
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.89
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.88
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.88
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.85
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.84
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.83
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.83
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.83
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.82
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.81
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.8
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.8
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.77
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.77
2guz_A	71	Mitochondrial import inner membrane translocase su	99.76
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.74
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.74
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.72
2guz_B	65	Mitochondrial import inner membrane translocase su	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.27
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.45

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.95  E-value=1.1e-27  Score=152.06  Aligned_cols=99  Identities=73%  Similarity=1.141  Sum_probs=91.4

Q ss_pred             CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517           6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus         6 ~~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ..|.++....++|+||||+++++.++||++|+++++++|||++++.+++.+.|++|++||++|+||.+|..||.++..+.
T Consensus         8 ~~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A            8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             CCCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            45667888899999999999999999999999999999999998778899999999999999999999999999999998


Q ss_pred             hhhhhhccccchhhhhhcc
Q psy4517          86 YVAEQFGEENVNTYFMVTS  104 (109)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~  104 (109)
                      .....++.+++..||...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~  106 (109)
T 2ctw_A           88 YVAEQFGEENVNTYFVSGP  106 (109)
T ss_dssp             HHHHHTCTTHHHHHHHSSS
T ss_pred             ccccccCCcchHHHhhcCC
Confidence            8888899999999986544

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=2.1e-25  Score=133.94  Aligned_cols=75  Identities=47%  Similarity=0.744  Sum_probs=69.4

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +....+||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||.+|..+.
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   77 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS   77 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence            456789999999999999999999999999999999998777889999999999999999999999999887653

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=130.33  Aligned_cols=74  Identities=46%  Similarity=0.713  Sum_probs=68.3

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +.+..+||+||||+++++.++||++|+++++++|||++.. +.+.+.|++|++||++|+||.+|..||.++..+.
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   76 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS   76 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            4567899999999999999999999999999999999964 7889999999999999999999999999887653

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=130.66  Aligned_cols=74  Identities=50%  Similarity=0.817  Sum_probs=67.6

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +...+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.+|..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            4558999999999999999999999999999999999765 3678899999999999999999999999987654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.91  E-value=1.3e-24  Score=129.90  Aligned_cols=71  Identities=55%  Similarity=0.887  Sum_probs=65.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +.|||+||||+++++.++||++|+++++++|||++++ +.+.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            3689999999999999999999999999999999974 6788999999999999999999999999886654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.91  E-value=4e-24  Score=130.88  Aligned_cols=77  Identities=39%  Similarity=0.644  Sum_probs=69.6

Q ss_pred             CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517           7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG   84 (109)
Q Consensus         7 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   84 (109)
                      .+.......|||+||||+++++.++||++|+++++++|||++++ +.+.+.|++|++||++|+||.+|..||.+|..+
T Consensus         9 ~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A            9 LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             hhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            34455667899999999999999999999999999999999975 678899999999999999999999999988654

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=5.3e-24  Score=130.34  Aligned_cols=74  Identities=50%  Similarity=0.793  Sum_probs=67.8

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      +....+||+||||+++++.++||++|+++++++|||+++ .+.+.+.|++|++||++|+||.+|..||.++..++
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            456689999999999999999999999999999999997 47889999999999999999999999999875443

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=2.1e-24  Score=137.50  Aligned_cols=75  Identities=28%  Similarity=0.568  Sum_probs=69.0

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ....|||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||.++..+..
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            456899999999999999999999999999999999986678899999999999999999999999998765543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.90  E-value=8.7e-24  Score=125.20  Aligned_cols=67  Identities=51%  Similarity=0.822  Sum_probs=61.6

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      ...+||+||||+++++.++||++|+++++++|||++++.   .+.|++|++||++|+||.+|..||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            357999999999999999999999999999999998753   5789999999999999999999999875

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.9e-24  Score=132.17  Aligned_cols=73  Identities=40%  Similarity=0.557  Sum_probs=67.4

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        10 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      ......+||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||....
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            3456789999999999999999999999999999999998778899999999999999999999999998553

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=9.6e-24  Score=130.06  Aligned_cols=76  Identities=46%  Similarity=0.747  Sum_probs=68.6

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .....+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.++..++.
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   81 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR   81 (92)
T ss_dssp             CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            34567999999999999999999999999999999998754 57889999999999999999999999998876653

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.89  E-value=2.1e-23  Score=128.81  Aligned_cols=73  Identities=33%  Similarity=0.526  Sum_probs=65.8

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      .....+||+||||+++++.++||++|+++++++|||+++..      ..+.+.|++|++||++|+||.+|..||.....
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            34568999999999999999999999999999999998642      56789999999999999999999999987654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=3.1e-24  Score=134.83  Aligned_cols=73  Identities=45%  Similarity=0.761  Sum_probs=68.0

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ..+||+||||+++++.++||++|+++++++|||+++..+.+.+.|++|++||++|+||.+|..||.++..+..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            3689999999999999999999999999999999986677889999999999999999999999999887654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=130.68  Aligned_cols=72  Identities=53%  Similarity=0.896  Sum_probs=64.4

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      .|||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.+|..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            5899999999999999999999999999999998754 46889999999999999999999999998766554

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.88  E-value=2.1e-23  Score=132.16  Aligned_cols=75  Identities=31%  Similarity=0.469  Sum_probs=67.2

Q ss_pred             CCCCCccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---CHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517           9 KMSTSGDSLYVILELPKTA-TPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus         9 ~~~~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~hPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      .......+||+||||++++ +.++||++|+++++++|||++++   .+.+.+.|++|++||++|+||.+|..||.++..
T Consensus         9 ~~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A            9 ELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TSTTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HHHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            3445678999999999999 99999999999999999999875   356789999999999999999999999997744

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.88  E-value=7.4e-23  Score=141.16  Aligned_cols=73  Identities=48%  Similarity=0.801  Sum_probs=68.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV   87 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   87 (109)
                      .|||+||||+++++.++||++||++++++|||++++.+++.++|++|++||++|+||.+|..||.+|..+...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~   74 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   74 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence            5899999999999999999999999999999999877889999999999999999999999999999776543

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-22  Score=125.18  Aligned_cols=70  Identities=49%  Similarity=0.766  Sum_probs=63.3

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      ...+||+||||+++++.++||++|+++++++|||+++..   .+.|++|++||++|+||.+|..||.++..+.
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            357899999999999999999999999999999998654   4689999999999999999999999875544

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=130.65  Aligned_cols=70  Identities=31%  Similarity=0.554  Sum_probs=63.3

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH------HHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      ....|||+||||+++++.++||++|+++++++|||+++...      .+.+.|++|++||++|+||.+|..||..+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34579999999999999999999999999999999987642      36789999999999999999999999754

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.84  E-value=1.1e-22  Score=130.09  Aligned_cols=83  Identities=23%  Similarity=0.358  Sum_probs=69.8

Q ss_pred             ccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch-hhhh
Q psy4517          14 GDSLYVILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY-VAEQ   90 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~-~~~~   90 (109)
                      ..++|+||||+++++.  ++||++||++++++|||++++    .++|++|++||++|+||.+|..||.++..... ....
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~~~~~~   82 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPT   82 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCCCCCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcccccccccCCC
Confidence            4689999999999998  999999999999999999875    47899999999999999999999987754322 3344


Q ss_pred             hccccchhhh
Q psy4517          91 FGEENVNTYF  100 (109)
Q Consensus        91 ~~~~~~~~~~  100 (109)
                      ++...+..||
T Consensus        83 ~g~p~w~~w~   92 (114)
T 1gh6_A           83 YGTDEWEQWW   92 (114)
T ss_dssp             CSSSCHHHHH
T ss_pred             CCCchHHHHH
Confidence            5566666665

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.4e-21  Score=119.06  Aligned_cols=62  Identities=29%  Similarity=0.485  Sum_probs=57.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHH
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI   76 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   76 (109)
                      ..+||+||||+++++.++||++|+++++++|||++.. +.+.+.|++|++||++|+|+.+|..
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            4799999999999999999999999999999999974 6788999999999999999988764

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.83  E-value=2.4e-22  Score=136.53  Aligned_cols=67  Identities=27%  Similarity=0.400  Sum_probs=59.0

Q ss_pred             CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          13 SGDSLYVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      ...++|+||||+++++  .++||+|||++++++|||++++    .++|++|++||++|+||.+|..||.+|..
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~~   77 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   77 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence            3479999999999998  6999999999999999999875    47899999999999999999999999863

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.82  E-value=7.1e-21  Score=114.38  Aligned_cols=66  Identities=21%  Similarity=0.375  Sum_probs=58.4

Q ss_pred             CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      +..++|+||||+++  ++.++||++||++++++|||++++    .+.|++|++||++|+++..|.. +.+|..
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~   76 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence            34689999999999  999999999999999999999865    5789999999999999999988 445543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.81  E-value=4.1e-20  Score=128.78  Aligned_cols=68  Identities=15%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517          13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTY   80 (109)
Q Consensus        13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   80 (109)
                      ...|||+||||++.  ++..+||++||+|++++|||++++..     .+.+.|++|++||+||+||.+|..||..
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            35799999999986  79999999999999999999987543     2567899999999999999999999953

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.80  E-value=2.6e-20  Score=114.00  Aligned_cols=66  Identities=30%  Similarity=0.372  Sum_probs=59.3

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhH
Q psy4517           9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKR   74 (109)
Q Consensus         9 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R   74 (109)
                      +.+.+..++|+||||+++++.++||++|+++++++|||++++. +.+.+.|++|++||++|++...|
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            3455668999999999999999999999999999999999865 45889999999999999988766

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.80  E-value=4.6e-20  Score=125.18  Aligned_cols=67  Identities=22%  Similarity=0.373  Sum_probs=60.9

Q ss_pred             CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          16 SLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        16 ~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      |||+||||++++  +..+||++|+++++++|||++++.+     .+.+.|..|++||+||+||.+|..||....
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            799999999998  9999999999999999999987653     256789999999999999999999997654

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.80  E-value=3.4e-21  Score=142.18  Aligned_cols=69  Identities=35%  Similarity=0.564  Sum_probs=0.0

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      +..|||+||||+++|+.++||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||.++.
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            45799999999999999999999999999999999874 5788999999999999999999999999743

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.77  E-value=3.2e-20  Score=148.07  Aligned_cols=78  Identities=45%  Similarity=0.741  Sum_probs=40.8

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517          10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV   87 (109)
Q Consensus        10 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   87 (109)
                      ......|||+||||+++|+.++||+|||++++++|||++++.+.+.++|++|++||++|+||.+|..||.+|..+...
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            445568999999999999999999999999999999999767888999999999999999999999999999776543

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.77  E-value=6.5e-20  Score=125.29  Aligned_cols=64  Identities=36%  Similarity=0.604  Sum_probs=58.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHHhcCchhHHHh
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIY   77 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Y   77 (109)
                      ..++|+||||++.++.++||++||++++++|||++++...   +.+.|++|++||++|+|+.+|..|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3689999999999999999999999999999999875432   789999999999999999999876

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.1e-19  Score=105.88  Aligned_cols=59  Identities=29%  Similarity=0.344  Sum_probs=52.6

Q ss_pred             CCccCcchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhH
Q psy4517          12 TSGDSLYVILELPK-TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR   74 (109)
Q Consensus        12 ~~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R   74 (109)
                      .+..++|+||||++ +++.++||++||++++++|||++++    .+.|++|++||++|+++..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence            35578999999999 7999999999999999999999754    46899999999999987655

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.74  E-value=7.2e-19  Score=120.25  Aligned_cols=66  Identities=27%  Similarity=0.461  Sum_probs=59.2

Q ss_pred             CccCcchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          13 SGDSLYVIL------ELPK-TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        13 ~~~~~y~iL------gv~~-~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      ...|||+||      |+++ +++..+||++||++++++|||++++   +.+.|..|++||+||+||.+|..||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            447999999      4665 8999999999999999999999875   5688999999999999999999999743

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.74  E-value=4.9e-19  Score=109.05  Aligned_cols=56  Identities=34%  Similarity=0.512  Sum_probs=51.1

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHHHhcC
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSD   70 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~---~~~~~f~~i~~Ay~~L~d   70 (109)
                      .++|++|||++.+|.++||+|||++++++|||++++.+   .+.++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999987643   478899999999999974

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=1.5e-18  Score=109.51  Aligned_cols=58  Identities=19%  Similarity=0.304  Sum_probs=51.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CH----HHHHHHHHHHHHHHHhcCch
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NP----EAAEKFKEINRAHSTLSDQT   72 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~---~~----~~~~~f~~i~~Ay~~L~d~~   72 (109)
                      ..+||+|||++. +|.++||++||++++++|||++++   .+    .+.++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            479999999996 999999999999999999999752   11    46889999999999999985

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=4e-12  Score=73.35  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             ccCcchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q psy4517          14 GDSLYVILELPKT---ATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD   70 (109)
Q Consensus        14 ~~~~y~iLgv~~~---as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d   70 (109)
                      ..+.|.||||++.   ++.++|+++||+|...+|||++++    ......|++|+++|..
T Consensus         3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence            3567899999998   999999999999999999999876    5667889999998864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.27  E-value=3.5e-12  Score=93.32  Aligned_cols=65  Identities=40%  Similarity=0.640  Sum_probs=55.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517          15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN---PEAAEKFKEINRAHSTLSDQTKRNIYDT   79 (109)
Q Consensus        15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~   79 (109)
                      .++|.+||+...++.++|+++|+++++++|||+.+..   ..+.+.|+.|.+||++|+|+.+|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998753   2478899999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.45  E-value=0.086  Score=41.38  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=35.6

Q ss_pred             CccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy4517          13 SGDSLYVILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST   67 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~   67 (109)
                      ...+||.+||++-....  .+|+++||++++..+++        .+++..|..|..|
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            34569999999665544  66999999999966543        3678888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-18
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	7e-18
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-17
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-16
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-14
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-14
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	9e-12
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-10

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.1 bits (174), Expect = 3e-18
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
          +G++ +  + +    TPE++KK YRK  L  HPDK    P    A   F E+N A S   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 70 DQTKRNIY 77
          +Q ++ +Y
Sbjct: 91 NQGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (170), Expect = 7e-18
 Identities = 33/69 (47%), Positives = 43/69 (62%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
           Y IL + KTA   EI+K Y+++A+KYHPD+N  + EA  KFKEI  A+  L+D  KR  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 77 YDTYGSLGL 85
          YD YG    
Sbjct: 65 YDQYGHAAF 73

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 2e-17
 Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
          G   Y  L L + A+ EEIK+ YR+ AL+YHPDKN   P A EKFKEI  A+  LSD  K
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 74 RNIYDTYGSLGL 85
          R I+D YG  GL
Sbjct: 61 REIFDRYGEEGL 72

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (162), Expect = 2e-16
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEK------FKEINRAHSTLSDQ 71
          Y IL    +A   ++K++Y+K+ L YHPDK   +  A         F EI++A   L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 72 TKRNIYDTYGS 82
            +  YD   S
Sbjct: 79 ETKKKYDLQRS 89

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (148), Expect = 1e-14
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPEAA-----EKFKEINRAHSTLSD 70
          + +  LP       + +  +++ +  +YHPDK  +  +A      ++   IN+A  TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 71 QTKRNIYD 78
             R  Y 
Sbjct: 64 PLMRAEYL 71

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 61.2 bits (148), Expect = 1e-14
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 16 SLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
           L  +L+LP+        +++ Y++ +L  HPDK  ++       +E+N    T   +  
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFKTEVY 67

Query: 74 RNIYDTYGS 82
              +  G+
Sbjct: 68 NLRMNLGGT 76

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 9e-12
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRN 75
          +  ++E        E KK  R++ LK+HPDKNP N   A E FK +    + L    K+ 
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQA 74

Query: 76 IYDTYG 81
            D   
Sbjct: 75 FLDQNA 80

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 51.3 bits (122), Expect = 2e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 10  MSTSGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
           M      L  +L L ++A      ++K Y K   ++HPDK  +      K K++N  +  
Sbjct: 3   MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKK 58

Query: 68  LSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYF 100
           + D  K      +G             +    +
Sbjct: 59  MEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQW 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.95
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.9
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.88
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.83
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.82
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8.4e-28  Score=142.10  Aligned_cols=72  Identities=46%  Similarity=0.784  Sum_probs=68.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .+|||+||||++++|.++||+||+++++++|||++++.+.+.+.|..|++||+||+||.+|..||.+|..++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            479999999999999999999999999999999998778888999999999999999999999999997765

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=133.55  Aligned_cols=71  Identities=55%  Similarity=0.887  Sum_probs=66.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL   85 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   85 (109)
                      .+|||+||||++++|.++|+++|+++++++|||++.. +++.+.|..|++||+||+||.+|..||.+|..++
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            3689999999999999999999999999999999864 6788899999999999999999999999887765

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3e-24  Score=131.58  Aligned_cols=73  Identities=33%  Similarity=0.526  Sum_probs=64.6

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517          11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL   83 (109)
Q Consensus        11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   83 (109)
                      .+..+|||+||||+++++.++||++|+++++++|||++...      ..+.+.|++|++||+||+||.+|..||.....
T Consensus        12 ~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             hhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            34457999999999999999999999999999999997643      44678899999999999999999999976543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.88  E-value=2.1e-25  Score=141.06  Aligned_cols=71  Identities=25%  Similarity=0.348  Sum_probs=63.0

Q ss_pred             CCccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517          12 TSGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY   86 (109)
Q Consensus        12 ~~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   86 (109)
                      ....+||+||||+++|  +.++||+||++|++++|||++++    .++|++|++||+||+|+.+|..||.++.....
T Consensus         5 ~~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~~   77 (114)
T d1gh6a_           5 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDA   77 (114)
T ss_dssp             HHHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCCCCcc
Confidence            3457899999999998  78899999999999999999975    36899999999999999999999987765543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.83  E-value=9.3e-22  Score=116.75  Aligned_cols=66  Identities=21%  Similarity=0.374  Sum_probs=59.8

Q ss_pred             CccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517          13 SGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS   82 (109)
Q Consensus        13 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   82 (109)
                      ...++|+||||++++  +.++||+||+++++++|||++++    .++|++|++||++|+|+.+|..||..+.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            457899999999987  99999999999999999999865    4689999999999999999999997553

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.9e-21  Score=111.70  Aligned_cols=65  Identities=23%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             CcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517          16 SLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTY   80 (109)
Q Consensus        16 ~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   80 (109)
                      |||+||||++.  ++.++||++|+++++.+|||+..+..     .+.+.|..|++||+||+||.+|..|+..
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            79999999985  45899999999999999999976442     3567799999999999999999999853

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=6.6e-20  Score=112.78  Aligned_cols=64  Identities=36%  Similarity=0.604  Sum_probs=57.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHHHhcCchhHHHh
Q psy4517          14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSDQTKRNIY   77 (109)
Q Consensus        14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~Y   77 (109)
                      +.+.|++|||+..+|.++||++|+++++.+|||++.+..   .+.+.|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999976542   4778899999999999999999877

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-19  Score=107.78  Aligned_cols=66  Identities=32%  Similarity=0.428  Sum_probs=57.4

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517          13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYG   81 (109)
Q Consensus        13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   81 (109)
                      .-+++|+||||+.++|.++||+||++++++||||++++. +.+.+.|+.|++||++|+   .+..||..+
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~   80 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNA   80 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccc
Confidence            347999999999999999999999999999999998765 458899999999999997   455666544