Psyllid ID: psy4519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHEEcccccEEEcccccccccccHcHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEHHccc
Coil and Loop (DISEMBL)
MIPNLELFIALIGSLclpfmaislpaLTDLITfwsshhglskaLFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCkkkkipsltypeiaetalsegppsvrwlapygRYWDALSHMIKGAlgtgiltmphafkdsgylLGFLGTVAIGAFTTSCIQILVRAQYELCrrkripsltypeILGAAlsegparfrwlapygrglsFTAMIVDEIGALCVYLLFIASNLS
Flexible Loop (DISEMBL)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKkkkipsltypEIAEtalsegppsvrWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Low Complexity Region (SEG)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Disordered region (IsUnstruct)
****LELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIA****
Disordered Region (DISOPRED)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLC***********************************DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Disordered Region (DISEMBL)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Disordered Region (DISPRO)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKK**************LSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASN**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.677	0.306	0.301	1e-16
Q8K415	481	Proton-coupled amino acid	yes	N/A	0.614	0.301	0.318	5e-15
Q495M3	483	Proton-coupled amino acid	yes	N/A	0.483	0.236	0.352	2e-14
Q8BHK3	478	Proton-coupled amino acid	yes	N/A	0.483	0.238	0.361	8e-14
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.495	0.234	0.322	5e-13
Q7Z2H8	476	Proton-coupled amino acid	no	N/A	0.576	0.285	0.303	1e-12
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.5	0.234	0.319	2e-12
Q8K4D3	475	Proton-coupled amino acid	no	N/A	0.495	0.246	0.364	3e-11
Q924A5	475	Proton-coupled amino acid	no	N/A	0.495	0.246	0.355	4e-11
Q811P0	477	Proton-coupled amino acid	no	N/A	0.474	0.234	0.336	3e-10

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 77  KVVAQYVLCKKKKIPSLTYPEIAETALSEGP-PSVRWLAPYGR--------YWDALSHMI 127
           K + +Y+    KK   +  P I     S+G     ++L  +          ++  L H++
Sbjct: 38  KHLQRYLNSDNKKDEEVMKPLIENEDDSDGTCDEHQYLQRHPDLDNKDGLTFFQTLIHLL 97

Query: 128 KGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYP 187
           KG +GTG+L +P A K++G LLG +  +  G  +  C+ ILVR  + LC+R +  +L Y 
Sbjct: 98  KGNIGTGLLGLPLAMKNAGVLLGPISLLFFGIISIHCMNILVRCSHFLCQRYKKANLGYS 157

Query: 188 EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           + +G AL  GP   +  A +GR L    ++V ++G   VY +F+A N+ 
Sbjct: 158 DTVGLALEVGPGVLQRHASFGRNLVDWFLVVTQLGFCSVYFVFLAENIK 206

Xenopus laevis (taxid: 8355)

>sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 89  KIPSLTYPEIAETALSEGPPSVRWLAPYGRY-------WDALSHMIKGALGTGILTMPHA 141
           K+  +++PE A+   S+ P  V   +            +  L H++KG +GTGIL +P A
Sbjct: 17  KLDLVSFPESAKKVQSQDPNPVNGSSSESSEKTKGITGFQTLVHLVKGNMGTGILGLPLA 76

Query: 142 FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF 201
            K++G L+G L  + +G     C+ ILVR     C R   P + Y + +   L+  P   
Sbjct: 77  VKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLASSPN-- 134

Query: 202 RWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
            WL   A +GR      +IV ++G  CVY++F+A NL
Sbjct: 135 TWLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFLADNL 171

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid.

Rattus norvegicus (taxid: 10116)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 5/119 (4%)

Query: 120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
           + AL H++KG +GTGIL +P A K++G L+G L  + +G     C+ ILV+     C+R 
Sbjct: 57  FQALIHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGFIACHCMHILVKCAQRFCKRL 116

Query: 180 RIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
             P + Y + +   L   P    WL   A +GR +    +I+ ++G  CVY++F+A NL
Sbjct: 117 NKPFMDYGDTVMHGLEANPN--AWLQNHAHWGRHIVSFFLIITQLGFCCVYIVFLADNL 173

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
           +  L H++KG +GTGIL +P A K++G L+G L  + +G     C+ ILVR     C R 
Sbjct: 52  FQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRL 111

Query: 180 RIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
             P + Y + +   L+  P    WL   A +GR +    +IV ++G  CVY++F+A NL
Sbjct: 112 NKPFMDYGDTVMHGLAFSPN--AWLQNHAHWGRRVVSFFLIVTQLGFCCVYIVFLADNL 168

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine.

Mus musculus (taxid: 10090)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 119 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 178
           +   L H++KG +GTG+L +P A K++G +LG +  V IG  +  C+ ILVR  + LC+R
Sbjct: 58  FLQTLVHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQR 117

Query: 179 KRIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
            +  +L Y + +  A+   P +  +  A +GR +    +++ ++G   VY++F+A N+
Sbjct: 118 FKKSTLGYSDTVSFAMEASPWSCLQRQAAWGRQVVDFFLVITQLGFCSVYIVFLAENV 175

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 100 ETALSEGPPSVRWLAPYGRY--------WDALSHMIKGALGTGILTMPHAFKDSGYLLGF 151
           E + SEG  ++     Y R+        +  L H++KG +GTG+L +P A K++G ++G 
Sbjct: 22  EESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGP 81

Query: 152 LGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF-RWLAPYGRG 210
           +  + IG     C+ ILV+  +  CRR     + Y + +   L   P  + R  A +GR 
Sbjct: 82  ISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRR 141

Query: 211 LSFTAMIVDEIGALCVYLLFIASNL 235
           +    +IV ++G  CVY +F+A N 
Sbjct: 142 VVDFFLIVTQLGFCCVYFVFLADNF 166

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 119 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 178
           +   L H++KG +GTG+L +P A K++G +LG +  V IG  +  C+ ILVR  + LC R
Sbjct: 61  FVQTLMHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCLR 120

Query: 179 KRIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
            +  +L Y + +  A+   P +  +  A +GR +    +++ ++G   VY++F+A N+ 
Sbjct: 121 FKKSTLGYSDTVSFAMEVSPWSCLQKQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVK 179

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 119 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 178
           ++  L H++KG +GTG+L +P A K++G LLG L  + IG     C+ ILV+  + LCRR
Sbjct: 48  WFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRR 107

Query: 179 KRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
              P L Y + +   L   P+ + R  + +GR +    +IV ++G  CVY +F+A N 
Sbjct: 108 LNKPFLDYGDTVMYGLECSPSTWVRNHSHWGRRIVDFFLIVTQLGFCCVYFVFLADNF 165

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 119 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 178
           ++  L H++KG +GTG+L +P A K++G LLG L  + IG     C+ ILV+  + LCRR
Sbjct: 48  WFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRR 107

Query: 179 KRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
              P L Y + +   L   P+ + R  + +GR +    ++V ++G  CVY +F+A N 
Sbjct: 108 LNKPFLDYGDTVMYGLECSPSTWIRNHSHWGRRIVDFFLVVTQLGFCCVYFVFLADNF 165

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 125 HMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSL 184
           H++K  +GTG L +P A K++G L+G +  +AIGA T  C+ IL+     L +R +   +
Sbjct: 58  HLLKSNIGTGFLGLPLAVKNAGLLVGPVSLLAIGALTVHCMDILLNCACHLTQRLQRSFV 117

Query: 185 TYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
            Y E    +L   P+ + R  + +GR +    +IV ++G   VY +F+A NL 
Sbjct: 118 NYEETTMYSLETCPSPWLRTHSVWGRYVVSFLLIVTQLGFCSVYFMFLADNLQ 170

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
195378050	466	GJ13640 [Drosophila virilis] gi|19415495	0.669	0.339	0.413	4e-29
195129331	466	GI11443 [Drosophila mojavensis] gi|19392	0.669	0.339	0.413	5e-29
350537367	510	uncharacterized protein LOC100159152 [Ac	0.627	0.290	0.443	1e-28
24662416	465	CG7888, isoform B [Drosophila melanogast	0.491	0.249	0.5	5e-28
195326668	462	GM25242 [Drosophila sechellia] gi|194118	0.491	0.251	0.5	5e-28
261278425	471	GH17693p [Drosophila melanogaster]	0.491	0.246	0.5	5e-28
24662420	462	CG7888, isoform A [Drosophila melanogast	0.491	0.251	0.5	5e-28
195589389	462	GD14275 [Drosophila simulans] gi|1941964	0.491	0.251	0.5	5e-28
194868742	465	GG15470 [Drosophila erecta] gi|190654110	0.491	0.249	0.5	7e-28
194751093	462	GF10626 [Drosophila ananassae] gi|190625	0.491	0.251	0.5	7e-28

>gi|195378050|ref|XP_002047800.1| GJ13640 [Drosophila virilis] gi|194154958|gb|EDW70142.1| GJ13640 [Drosophila virilis]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 104/162 (64%), Gaps = 4/162 (2%)

Query: 79  VAQYVLCKKKKIPSLTYPEIAETALSEGP---PSVRWLAPY-GRYWDALSHMIKGALGTG 134
           V+ +V   K++  +    E+AE   ++ P   P      P+    W+ L H++KG+LGTG
Sbjct: 12  VSDHVDNVKQQSGNKYSLELAEKGAAKDPEYNPYEHREVPHPTTNWETLFHLLKGSLGTG 71

Query: 135 ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 194
           IL MP+AF++SGY+ G +GT+ IG   T CI  LV+A+YELCRR+++PS+ YP +   AL
Sbjct: 72  ILAMPNAFRNSGYVTGSIGTIVIGFICTYCIHQLVKAEYELCRRRKVPSMNYPAVAETAL 131

Query: 195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           SEGPA F+  APY   +    +++ ++G  CVY++F+ASN+ 
Sbjct: 132 SEGPAFFKACAPYIGTVVNVFLLIYQLGTCCVYVVFVASNIK 173

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129331|ref|XP_002009109.1| GI11443 [Drosophila mojavensis] gi|193920718|gb|EDW19585.1| GI11443 [Drosophila mojavensis]

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 4/162 (2%)

Query: 79  VAQYVLCKKKKIPSLTYPEIAETALSEGP---PSVRWLAPY-GRYWDALSHMIKGALGTG 134
           V+ +V   K++  +    E+AE    + P   P      P+    W+ L H++KG+LGTG
Sbjct: 12  VSDHVDNIKQQSSNKYSLELAEKGAVKAPDYNPYEHREVPHPTTNWETLFHLLKGSLGTG 71

Query: 135 ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 194
           IL MP+AF++SGY+ G +GT+ IG   T CI  LV+A+YELCRRK++PS+ YP +  AAL
Sbjct: 72  ILAMPNAFRNSGYVTGTIGTIVIGFICTYCIHQLVKAEYELCRRKKVPSMNYPAVAEAAL 131

Query: 195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
            EGP+ F+  APY   +    +++ ++G  CVY++F+ASN+ 
Sbjct: 132 GEGPSFFKNCAPYIGTVVNVFLLIYQLGTCCVYVVFVASNIK 173

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350537367|ref|NP_001233210.1| uncharacterized protein LOC100159152 [Acyrthosiphon pisum] gi|334884064|gb|AEH21125.1| amino acid transporter [Acyrthosiphon pisum]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 94/151 (62%)

Query: 85  CKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKD 144
           C    I   T  ++ E      P   R +     Y+D L H++K +LGTGIL MP AFK+
Sbjct: 65  CVGINIKGDTATQLNEKQNFYNPYQHRDVKHPTTYFDTLIHLLKASLGTGILAMPSAFKN 124

Query: 145 SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWL 204
           +GY++G LGT+ IG   T  I +LV A +ELC R+++PSLTYP  + AA  EGP   R L
Sbjct: 125 AGYVVGTLGTIIIGILCTFTIHLLVTASHELCIRRKVPSLTYPGTVAAAFEEGPKFTRIL 184

Query: 205 APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
           APY R ++   +++ +IG+ CVY++FIASNL
Sbjct: 185 APYARMMTNMFLVLYQIGSSCVYVVFIASNL 215

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24662416|ref|NP_648425.1| CG7888, isoform B [Drosophila melanogaster] gi|7294779|gb|AAF50114.1| CG7888, isoform B [Drosophila melanogaster]

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 57  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 116

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 117 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 172

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326668|ref|XP_002030047.1| GM25242 [Drosophila sechellia] gi|194118990|gb|EDW41033.1| GM25242 [Drosophila sechellia]

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 54  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 113

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 114 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 169

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261278425|gb|ACX61598.1| GH17693p [Drosophila melanogaster]

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 63  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 122

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 123 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 178

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24662420|ref|NP_729651.1| CG7888, isoform A [Drosophila melanogaster] gi|24662424|ref|NP_729652.1| CG7888, isoform C [Drosophila melanogaster] gi|7294780|gb|AAF50115.1| CG7888, isoform A [Drosophila melanogaster] gi|23093665|gb|AAN11894.1| CG7888, isoform C [Drosophila melanogaster] gi|33589615|gb|AAQ22574.1| GH09436p [Drosophila melanogaster] gi|220951514|gb|ACL88300.1| CG7888-PA [synthetic construct]

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 54  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 113

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 114 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195589389|ref|XP_002084434.1| GD14275 [Drosophila simulans] gi|194196443|gb|EDX10019.1| GD14275 [Drosophila simulans]

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 54  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 113

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 114 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 169

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194868742|ref|XP_001972327.1| GG15470 [Drosophila erecta] gi|190654110|gb|EDV51353.1| GG15470 [Drosophila erecta]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct: 57  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 116

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 117 MPSMNYPLVAETAMGEGPKCFRIFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 172

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751093|ref|XP_001957861.1| GF10626 [Drosophila ananassae] gi|190625143|gb|EDV40667.1| GF10626 [Drosophila ananassae]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 85/116 (73%)

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
           + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+A++ELCRRK+
Sbjct: 54  ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTYCIHQLVKAEFELCRRKK 113

Query: 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
           +PS+ YP +   AL EGP  FR LAPY   +  T +++ ++G  CVY++F+ASN+ 
Sbjct: 114 MPSMNYPAVAETALGEGPKCFRVLAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIK 169

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.487	0.247	0.504	2.7e-29
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.588	0.275	0.395	4.4e-22
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.491	0.257	0.344	3.5e-17
UNIPROTKB|E2RH94	483	SLC36A2 "Uncharacterized prote	0.483	0.236	0.369	4.9e-17
UNIPROTKB|F1S0V7	226	F1S0V7 "Uncharacterized protei	0.483	0.504	0.386	1.8e-16
UNIPROTKB|E2RHF1	476	SLC36A1 "Uncharacterized prote	0.483	0.239	0.369	1.4e-15
RGD|620492	481	Slc36a2 "solute carrier family	0.610	0.299	0.329	3e-15
UNIPROTKB|Q8K415	481	Slc36a2 "Proton-coupled amino	0.610	0.299	0.329	3e-15
UNIPROTKB|G3N2J9	228	SLC36A2 "Uncharacterized prote	0.483	0.5	0.352	4.2e-15
FB|FBgn0033572	460	CG12943 [Drosophila melanogast	0.470	0.241	0.367	4.4e-15

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 58/115 (50%), Positives = 84/115 (73%)

Query:   121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
             + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG   T CI  LV+AQYELCRRK+
Sbjct:    57 ETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRRKK 116

Query:   181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
             +PS+ YP +   A+ EGP  FR  APY   +  T +++ ++G  CVY++F+ASN+
Sbjct:   117 MPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNI 171

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 55/139 (39%), Positives = 78/139 (56%)

Query:    97 EIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVA 156
             EI  T  S  P   R L      +D L H++KG +GTGIL MP AFK++G  +G  GT+ 
Sbjct:    76 EIGSTDKSYNPTHHRDLEHPTSNFDTLVHLLKGNIGTGILAMPDAFKNAGLYVGLFGTMI 135

Query:   157 IGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAM 216
             +GA  T C+ +LV   +ELCRR + PSL + E+   +   GP   R  +   R +  T +
Sbjct:   136 MGAICTHCMHMLVNCSHELCRRFQQPSLDFSEVAYCSFESGPLGLRRYSMLARRIVTTFL 195

Query:   217 IVDEIGALCVYLLFIASNL 235
              + +IG  CVY LF+A N+
Sbjct:   196 FITQIGFCCVYFLFVALNI 214

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/116 (34%), Positives = 67/116 (57%)

Query:   120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
             +   +H +K ++GTG+L MP AF  +GY+ G L T+ IG+    C+ IL++  Y LC+R+
Sbjct:    46 FQTFAHFLKASVGTGVLAMPSAFAHAGYVNGTLLTLIIGSLALYCLHILIKCMYILCKRQ 105

Query:   180 RIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
             R+P +++ + +   L +GP   R LAP         +     G  CVY++FIA ++
Sbjct:   106 RVPYVSFSQAMNLGLKQGPPWLRCLAPIAVPFVDGFLAFYHFGICCVYVVFIAESI 161

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

UNIPROTKB|E2RH94 SLC36A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 44/119 (36%), Positives = 67/119 (56%)

Query:   120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
             +  L H++KG +GTGIL +P A K++G L+G L  +A+G     C+ ILVR     C R 
Sbjct:    57 FQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLAMGFTACHCMHILVRCAQHFCHRL 116

Query:   180 RIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
               P + Y + +   L   P+   WL   A +GR +    +IV ++G  CVY++F+A NL
Sbjct:   117 NKPFMDYGDTVKHGLEASPSA--WLRNHAHWGRRIVSFFLIVTQLGFCCVYIVFLADNL 173

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005280 "hydrogen:amino acid symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S0V7 F1S0V7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 46/119 (38%), Positives = 68/119 (57%)

Query:   120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
             +  L H++KG +GTGIL +P A K++G LLG L  +A+G  +  C+ ILVR     C R 
Sbjct:     1 FQTLVHLVKGNIGTGILGLPLAMKNAGILLGPLSLLAMGFISCHCMHILVRCAQRFCHRL 60

Query:   180 RIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
               P L Y + +   L   P+   WL   A +GR +    +IV ++G  CVY++F+A NL
Sbjct:    61 NKPFLDYGDTVMHGLEATPSA--WLQNHAHWGRRIVSFFLIVTQMGFCCVYIVFLADNL 117

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 44/119 (36%), Positives = 67/119 (56%)

Query:   119 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 178
             ++  L H++KG LGTG+L +P A K++G L+G L  + IG     C+ ILVR  +  CRR
Sbjct:    49 WFQTLIHLLKGNLGTGLLGLPLAVKNAGILMGPLSLLVIGIVAVHCMSILVRCAHHFCRR 108

Query:   179 KRIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASN 234
                P + Y + +   L   P+   WL   A +GR +    +IV ++G  CVY +F+A N
Sbjct:   109 LNKPFVDYGDTVMYGLESSPSS--WLRNHAHWGRHIVDFFLIVTQLGFCCVYFVFLADN 165

GO:0015992 "proton transport" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|620492 Slc36a2 "solute carrier family 36 (proton/amino acid symporter), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 52/158 (32%), Positives = 82/158 (51%)

Query:    89 KIPSLTYPEIAETALSEGPPSVRWLAPYGRY-------WDALSHMIKGALGTGILTMPHA 141
             K+  +++PE A+   S+ P  V   +            +  L H++KG +GTGIL +P A
Sbjct:    17 KLDLVSFPESAKKVQSQDPNPVNGSSSESSEKTKGITGFQTLVHLVKGNMGTGILGLPLA 76

Query:   142 FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF 201
              K++G L+G L  + +G     C+ ILVR     C R   P + Y + +   L+  P   
Sbjct:    77 VKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLASSPNT- 135

Query:   202 RWL---APYGR-GLSFTAMIVDEIGALCVYLLFIASNL 235
              WL   A +GR  +SF  +IV ++G  CVY++F+A NL
Sbjct:   136 -WLQSHAHWGRHAVSFF-LIVTQLGFCCVYIVFLADNL 171

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005280 "hydrogen:amino acid symporter activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA;ISO

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA;ISO;IDA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA;ISO

GO:0015808 "L-alanine transport" evidence=ISO

GO:0015816 "glycine transport" evidence=ISO;IDA

GO:0015824 "proline transport" evidence=ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0035524 "proline transmembrane transport" evidence=ISO

GO:0005302 "L-tyrosine transmembrane transporter activity" evidence=ISO

UNIPROTKB|Q8K415 Slc36a2 "Proton-coupled amino acid transporter 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 52/158 (32%), Positives = 82/158 (51%)

Query:    89 KIPSLTYPEIAETALSEGPPSVRWLAPYGRY-------WDALSHMIKGALGTGILTMPHA 141
             K+  +++PE A+   S+ P  V   +            +  L H++KG +GTGIL +P A
Sbjct:    17 KLDLVSFPESAKKVQSQDPNPVNGSSSESSEKTKGITGFQTLVHLVKGNMGTGILGLPLA 76

Query:   142 FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF 201
              K++G L+G L  + +G     C+ ILVR     C R   P + Y + +   L+  P   
Sbjct:    77 VKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLASSPNT- 135

Query:   202 RWL---APYGR-GLSFTAMIVDEIGALCVYLLFIASNL 235
              WL   A +GR  +SF  +IV ++G  CVY++F+A NL
Sbjct:   136 -WLQSHAHWGRHAVSFF-LIVTQLGFCCVYIVFLADNL 171

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3N2J9 SLC36A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 42/119 (35%), Positives = 67/119 (56%)

Query:   120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
             +  L H++KG +GTG+L +P A K++G L+G L  +AIG  +   + IL+R     C R 
Sbjct:    57 FQTLVHLVKGNMGTGVLGLPLAMKNAGILMGPLSLLAIGFISCHSMHILIRCARRFCHRF 116

Query:   180 RIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFIASNL 235
               P + Y + +   L   P+   WL   A +GR +    +IV ++G  CVY++F+A NL
Sbjct:   117 NKPFMDYGDTVMHGLEANPSA--WLRNHAHWGRRIVSFFLIVTQMGFCCVYIVFLADNL 173

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033572 CG12943 [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 43/117 (36%), Positives = 67/117 (57%)

Query:   121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180
             DA   ++K  +GTGIL MP AF+ SG+++G + ++ +    T  I +L+    E CRR+R
Sbjct:    50 DAFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIADMTECCRRRR 109

Query:   181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGA--LC-VYLLFIASN 234
             +P ++ PE +  A  EGP   +W+  +GR   F    V   G   LC VYL+F++ N
Sbjct:   110 VPQVSMPEAVRIAYEEGP---KWINCFGRAAGFMTTCVLVFGQFLLCTVYLVFVSKN 163

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0005615 "extracellular space" evidence=IDA

GO:0032504 "multicellular organism reproduction" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	236
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	4e-10

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
           W A+ ++IK  +G G+L++P+AFK  G++ G +  V +G  +   + +LV+    + + K
Sbjct: 6   WQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVK 65

Query: 180 RIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
                +Y ++           +R   P G+ L   A++V+  G    YL+F   NL 
Sbjct: 66  GKRRKSYGDLG----------YRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLP 112

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG1304|consensus	449		99.96
PTZ00206	467	amino acid transporter; Provisional	99.82
KOG1303|consensus	437		99.79
PLN03074	473	auxin influx permease; Provisional	99.71
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.69
KOG1304|consensus	449		99.54
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.42
PLN03074	473	auxin influx permease; Provisional	99.39
KOG4303|consensus	524		99.39
KOG1305|consensus	411		99.38
PTZ00206	467	amino acid transporter; Provisional	99.02
PRK09664	415	tryptophan permease TnaB; Provisional	98.78
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.77
PRK10483	414	tryptophan permease; Provisional	98.72
KOG4303|consensus	524		98.65
PRK15132	403	tyrosine transporter TyrP; Provisional	98.64
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.44
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.35
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	98.13
KOG1303|consensus	437		97.91
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.89
KOG3832|consensus	319		97.84
TIGR00912	359	2A0309 spore germination protein (amino acid perme	96.58
KOG1305|consensus	411		96.09
PRK10655	438	potE putrescine transporter; Provisional	95.16
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	94.94
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	94.89
PF03845	320	Spore_permease: Spore germination protein; InterPr	94.79
PRK10644	445	arginine:agmatin antiporter; Provisional	93.7
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	93.64
TIGR00930	953	2a30 K-Cl cotransporter.	93.44
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	93.06
TIGR00909	429	2A0306 amino acid transporter.	93.05
PRK10249	458	phenylalanine transporter; Provisional	93.0
PRK15049	499	L-asparagine permease; Provisional	92.91
PRK11387	471	S-methylmethionine transporter; Provisional	92.77
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	92.64
PRK10238	456	aromatic amino acid transporter; Provisional	91.65
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	91.41
PRK10836	489	lysine transporter; Provisional	90.74
PRK10580	457	proY putative proline-specific permease; Provision	90.66
PRK10746	461	putative transport protein YifK; Provisional	88.15
TIGR00913	478	2A0310 amino acid permease (yeast).	87.74
PRK11021	410	putative transporter; Provisional	87.57
COG0833	541	LysP Amino acid transporters [Amino acid transport	87.14
TIGR00906	557	2A0303 cationic amino acid transport permease.	86.1
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	84.87
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	84.14
TIGR00911	501	2A0308 L-type amino acid transporter.	84.04
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	83.77
PRK15015	701	carbon starvation protein A; Provisional	80.94

>KOG1304|consensus

Probab=99.96  E-value=1.8e-29  Score=231.17  Aligned_cols=136  Identities=38%  Similarity=0.635  Sum_probs=130.0

Q ss_pred             hccCCCCCccccCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy4519         101 TALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR  180 (236)
Q Consensus       101 ~~~~~~~~~~~~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~  180 (236)
                      .|.+++|..++..++++|+.++..|+.|+++|+|+|+||+||+++||+.|.+..++++++|.||+++|++|.+++++|++
T Consensus        31 ~d~~~~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~  110 (449)
T KOG1304|consen   31 NDGDYSPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFR  110 (449)
T ss_pred             CCCCCCccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34567788888888999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519         181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS  236 (236)
Q Consensus       181 ~~~~sY~di~~~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~  236 (236)
                      .+..+|.|.++.+++.||.|.|.+|+++|.+|+++++++|+|+|++|+||+++|+|
T Consensus       111 ~~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~  166 (449)
T KOG1304|consen  111 GPSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLK  166 (449)
T ss_pred             CccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHH
Confidence            88899999999999999999999999999999999999999999999999999985

>PTZ00206 amino acid transporter; Provisional

Probab=99.82  E-value=7.9e-20  Score=171.29  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=95.9

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q psy4519         115 PYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL  194 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~  194 (236)
                      .+.+..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||+++|++++++.      +..+|+|++++++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~------~~~sY~~la~~~~  131 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT------NIRTYEGVARVLL  131 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHh
Confidence            4567789999999999999999999999999999999999999999999999999986541      2369999999885


Q ss_pred             hcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519         195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL  235 (236)
Q Consensus       195 ~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl  235 (236)
                                ||+|++++++++.++++|+|++|+++++|++
T Consensus       132 ----------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l  162 (467)
T PTZ00206        132 ----------GPWGSYYVAATRAFHGFSACVAYVISVGDIL  162 (467)
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      6788999999999999999999999999875

>KOG1303|consensus

Probab=99.79  E-value=1.8e-19  Score=166.79  Aligned_cols=114  Identities=25%  Similarity=0.427  Sum_probs=104.9

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA  192 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~  192 (236)
                      ++++.|+++|.+|.+++++|.|+|+||+|++++||+.|++++++.++++.||..+|.+|.+..+.+.++.+.+|+|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            45669999999999999999999999999999999999999999999999999999999998877776667889999998


Q ss_pred             HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519         193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS  236 (236)
Q Consensus       193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~  236 (236)
                      +|  |        +.+++++.+.+.+.++|+|++|++..+||++
T Consensus       114 af--G--------~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~  147 (437)
T KOG1303|consen  114 AF--G--------PKGRLLVSVLQYLELFGICVVYIILAGDNLK  147 (437)
T ss_pred             Hh--C--------CCceEeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86  4        4559999999999999999999999999974

>PLN03074 auxin influx permease; Provisional

Probab=99.71  E-value=1.5e-16  Score=149.36  Aligned_cols=121  Identities=19%  Similarity=0.182  Sum_probs=101.2

Q ss_pred             cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519         112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG  191 (236)
Q Consensus       112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~  191 (236)
                      ...++++.+++.+|++|+.+|+|+|+||+||+++||++|++.++++++++.||+++|++++++.++|.+.+..+|++...
T Consensus        41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~  120 (473)
T PLN03074         41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI  120 (473)
T ss_pred             cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999988877665544455555433


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519         192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL  235 (236)
Q Consensus       192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl  235 (236)
                      ..+   +...+.+||.++.+..++.++++++.|+.|++..++|+
T Consensus       121 ~~~---e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~  161 (473)
T PLN03074        121 QWF---EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNI  161 (473)
T ss_pred             HHH---HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence            322   22234567788999999999999999999999988775

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.69  E-value=4.5e-18  Score=155.26  Aligned_cols=110  Identities=26%  Similarity=0.494  Sum_probs=99.3

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q psy4519         115 PYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL  194 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~  194 (236)
                      |+.|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||+++|++++++..  ++.+..+|+|+++.++
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999987654  2234578999987664


Q ss_pred             hcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519         195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS  236 (236)
Q Consensus       195 ~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~  236 (236)
                                |+++++++++++.+.++|.|++|+++++|++.
T Consensus        79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~  110 (409)
T PF01490_consen   79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLS  110 (409)
T ss_pred             ----------cccccccccchheeccccccceeEEEeeeeee
Confidence                      67779999999999999999999999999874

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1304|consensus

Probab=99.54  E-value=6.2e-15  Score=135.73  Aligned_cols=70  Identities=36%  Similarity=0.659  Sum_probs=65.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHH
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREI   71 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~i   71 (236)
                      +||+|++|||||||+|++.|++++||++|+..+|+++++..+|+ +++|++++++|+++++.|||+|+.+|
T Consensus       380 ~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~-~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  380 AVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWK-LIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehH-HHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            58999999999999999999999999999999999877777886 68999999999999999999999875

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.42  E-value=9.2e-13  Score=121.97  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=97.8

Q ss_pred             cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519         112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG  191 (236)
Q Consensus       112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~  191 (236)
                      ..+++.+..++++++.++++|+|+|+||++++..|++++++++++.+.+++++.+++.|+.++..+    +..+|.++++
T Consensus         4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~   79 (415)
T COG0814           4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVE   79 (415)
T ss_pred             cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999766522    2248999888


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519         192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL  235 (236)
Q Consensus       192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl  235 (236)
                      +.+          ||.+++++++++.+.++|.+.+|.+.+++++
T Consensus        80 ~~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l  113 (415)
T COG0814          80 DYL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLL  113 (415)
T ss_pred             HHh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            764          6677999999999999999999999999875

>PLN03074 auxin influx permease; Provisional

Probab=99.39  E-value=5.3e-13  Score=125.41  Aligned_cols=88  Identities=19%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----------CchHH-HHHHHHHHHHH-HHHHHhchhHHhH
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHG----------LSKAL-FITKHVVIFLI-AVVGCYTGVQASV   68 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~----------~~~~~-~~~~~~~ii~~-G~~~~v~Gty~si   68 (236)
                      +||+|++++||+||++++.+++++|+++|++++|++..+          ..+|+ ..++|++++++ |+++++.|||+|+
T Consensus       369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi  448 (473)
T PLN03074        369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASM  448 (473)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHH
Confidence            489999999999999999999999999999988764110          11232 36899999984 7777899999999


Q ss_pred             HHHHHHHhh-h-hhhhhhhhhc
Q psy4519          69 REILIEVFK-V-VAQYVLCKKK   88 (236)
Q Consensus        69 ~~ii~~~~~-~-~~~~~~~~~~   88 (236)
                      ++|++++.. + -..--+|+.+
T Consensus       449 ~~ii~~~~~~~~f~~~~~c~~~  470 (473)
T PLN03074        449 TNFVRQIDTFGLFAKCYQCPPP  470 (473)
T ss_pred             HHHHHhhhhhhhhhhhccCCCC
Confidence            999976433 1 2333567644

>KOG4303|consensus

Probab=99.39  E-value=1.5e-13  Score=121.97  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR--IPSLTYPEILG  191 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~--~~~~sY~di~~  191 (236)
                      +.+.+.+||++|++|++.|--+++||+|...+||| ++..++.++.+|.||..+|++|..+-.+...  +-+.||.+|+.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            34689999999999999999999999999999999 7999999999999999999999876543211  12479999999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519         192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL  235 (236)
Q Consensus       192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl  235 (236)
                      .++  +|       +.|...|++.+.+..+.+|+.|++..+|-+
T Consensus       193 ~C~--~P-------~lGgr~V~~AQliELlmTCIlYvVv~gdLl  227 (524)
T KOG4303|consen  193 FCY--KP-------GLGGRWVLAAQLIELLMTCILYVVVAGDLL  227 (524)
T ss_pred             Hhc--CC-------CcchheeeHHHHHHHHHHHHhhhheechhh
Confidence            875  65       577788999999999999999999988754

>KOG1305|consensus

Probab=99.38  E-value=3.5e-13  Score=124.30  Aligned_cols=105  Identities=25%  Similarity=0.379  Sum_probs=91.9

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA  193 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~  193 (236)
                      ++++|...+.+|++|+++|+|++++|+||++.|++.|++++.++++++.++.+++.+|+++.++      .+|+++++++
T Consensus         3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~------~ty~~l~~~~   76 (411)
T KOG1305|consen    3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE------RTYSSLGDLI   76 (411)
T ss_pred             CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC------CCHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999876643      3999999988


Q ss_pred             hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519         194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL  235 (236)
Q Consensus       194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl  235 (236)
                      +          |+.|+....+++.....| |++|+++++|.+
T Consensus        77 ~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~  107 (411)
T KOG1305|consen   77 F----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLL  107 (411)
T ss_pred             c----------CCCceeeehhhHHhhhcc-ceEEEEEEcccc
Confidence            5          566677777777777777 799999999865

>PTZ00206 amino acid transporter; Provisional

Probab=99.02  E-value=2.7e-10  Score=107.07  Aligned_cols=68  Identities=19%  Similarity=0.408  Sum_probs=58.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHH
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLIT---FWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREIL   72 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~---~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii   72 (236)
                      .||+++.+++|+||++++.++|++|++++++.   .|++ .  .++ ++++|++++++|+++.+.|||+|+.+.+
T Consensus       395 ~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~-~--~~~-~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        395 FIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQK-V--GPF-YYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             ccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHh-h--chH-HHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            48999999999999999999999999999984   3432 1  223 3579999999999999999999999876

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.78  E-value=4.5e-08  Score=90.54  Aligned_cols=102  Identities=9%  Similarity=0.034  Sum_probs=89.0

Q ss_pred             CcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhc
Q psy4519         117 GRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE  196 (236)
Q Consensus       117 ~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~  196 (236)
                      .+...+..-+..+.+|+|+|++|.+.+..|+.+++++++++++..+||..++.|...+.    + +..++..++|..+  
T Consensus         9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~----~-~g~~l~tma~~~L--   81 (415)
T PRK09664          9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY----P-VGSSFNTITKDLI--   81 (415)
T ss_pred             cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHHc--
Confidence            37777899999999999999999999999999999999999999999999999986443    1 2467888888764  


Q ss_pred             CchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519         197 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS  233 (236)
Q Consensus       197 G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~  233 (236)
                              ||.|+.+.+++..+-.++.+++|+.-.++
T Consensus        82 --------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~  110 (415)
T PRK09664         82 --------GNTWNIISGITVAFVLYILTYAYISANGA  110 (415)
T ss_pred             --------ChHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence                    67889999999999999999999865444

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.77  E-value=7.4e-08  Score=88.82  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=91.2

Q ss_pred             CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519         116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS  195 (236)
Q Consensus       116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~  195 (236)
                      +.+.+++.+-++.+.+|+|+|+||.+....|++++++.+++.+.+++|+..++.|...+..     +..+|.+++++.+ 
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~l-   75 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYL-   75 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh-
Confidence            4577889999999999999999999999999999999999999999999999999865431     2468999998764 


Q ss_pred             cCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519         196 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASN  234 (236)
Q Consensus       196 ~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n  234 (236)
                               ||.|+.++.++..+..++.+.+|..=.++.
T Consensus        76 ---------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~  105 (394)
T PF03222_consen   76 ---------GKKGGIVIGISYLFLLYALLVAYISGGGSI  105 (394)
T ss_pred             ---------ChHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence                     788899999999999999999998766653

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.72  E-value=1.2e-07  Score=87.81  Aligned_cols=105  Identities=9%  Similarity=0.050  Sum_probs=91.2

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA  193 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~  193 (236)
                      +++.+.+++.+-+..+.||+|+|++|.+.+..|+.+++++++++++..+||..+++|...+.    + +..++..++|..
T Consensus         8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~----~-~g~~~~tma~~~   82 (414)
T PRK10483          8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY----R-IGSSFDTITKDL   82 (414)
T ss_pred             cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999985443    1 236888988876


Q ss_pred             hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519         194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS  233 (236)
Q Consensus       194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~  233 (236)
                      +          ||.|+.+..++..+-.++.+++|..=.++
T Consensus        83 L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~  112 (414)
T PRK10483         83 L----------GKGWNVVNGISIAFVLYILTYAYISASGS  112 (414)
T ss_pred             c----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            4          67789999999999999999999765444

>KOG4303|consensus

Probab=98.65  E-value=2.9e-09  Score=94.96  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=63.1

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHh
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVF   76 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~~~   76 (236)
                      .||+|..+|+|+||+.++.|+|+.|+++|++..|++    ..|....+|..||++|...+|.|.|.|..++|+.+.
T Consensus       448 ~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~----L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~  519 (524)
T KOG4303|consen  448 SVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT----LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN  519 (524)
T ss_pred             HhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh----hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence            389999999999999999999999999999988864    124345689999999999999999999999996643

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.64  E-value=2.9e-07  Score=85.12  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcC
Q psy4519         118 RYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEG  197 (236)
Q Consensus       118 s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G  197 (236)
                      +.+.+.+.+..+.+|+|+|++|.+....|++++++++++++.+.+|+.+++.|+..+    . .+..++.+++|+.+   
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~----~-~~~~~~~~~a~~~L---   75 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH----V-PADTGLGTLAKRYL---   75 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-CCCCCHHHHHHHHh---
Confidence            667889999999999999999999999999999999999999999999999986322    1 23467999988764   


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy4519         198 PARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIA  232 (236)
Q Consensus       198 ~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~  232 (236)
                             ||.|+++..++..+..+..+.+|..-.+
T Consensus        76 -------G~~g~~i~~~~y~fl~y~ll~AYisg~g  103 (403)
T PRK15132         76 -------GRYGQWLTGFSMMFLMYALTAAYISGAG  103 (403)
T ss_pred             -------ChHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence                   7788999999999999999999987633

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.44  E-value=5.2e-07  Score=82.19  Aligned_cols=96  Identities=11%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             HHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhhh
Q psy4519         124 SHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRW  203 (236)
Q Consensus       124 ~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r~  203 (236)
                      ..++++++|+|++++|.++...|...+.+.+++.+.++.++..++.+...+..     +..+|.+.+++.+         
T Consensus         4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-----~~~~~~~~~~~~~---------   69 (381)
T TIGR00837         4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-----GGASFNTIAKDLL---------   69 (381)
T ss_pred             EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh---------
Confidence            45678999999999999999999999999999999999999999998865431     1357888887764         


Q ss_pred             hhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519         204 LAPYGRGLSFTAMIVDEIGALCVYLLFIASN  234 (236)
Q Consensus       204 ~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n  234 (236)
                       ||++++++.+...+..+..+++|.+..++.
T Consensus        70 -G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~   99 (381)
T TIGR00837        70 -GKTGNIIAGLSLLFVLYILTYAYISGGGSI   99 (381)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence             788899999999999999999998876544

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.35  E-value=6.6e-06  Score=76.64  Aligned_cols=98  Identities=18%  Similarity=0.141  Sum_probs=84.4

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhh
Q psy4519         123 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR  202 (236)
Q Consensus       123 ~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r  202 (236)
                      ...+..+.+|+|+|+||-.....|++++++++++...+++|+...|.|.....    +.+..+|.++++..+        
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~----~~~~~~i~~v~~~~l--------   92 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG----SNPSGNITETVEEHF--------   92 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCHHHHHHHHc--------
Confidence            47999999999999999999999999999999999999999999998874322    123468999998775        


Q ss_pred             hhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519         203 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASN  234 (236)
Q Consensus       203 ~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n  234 (236)
                        ||.++.+..+.-.+..+..+.+|.+.+.+.
T Consensus        93 --G~~g~~i~~ilYff~ly~ll~aY~~~itn~  122 (443)
T PRK13629         93 --GKTGGVVITFLYFFAICPLLWIYGVTITNT  122 (443)
T ss_pred             --ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              778899999999999999999998776654

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=98.13  E-value=2.9e-07  Score=84.06  Aligned_cols=68  Identities=26%  Similarity=0.357  Sum_probs=56.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH-HHHHHHHHHHHHHHHhchhHHhH
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALF-ITKHVVIFLIAVVGCYTGVQASV   68 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~G~~~~v~Gty~si   68 (236)
                      .+|+++.+++++||++++.+++++|++++++.+++++....+++. .+.+.+++++|++..+.|||.++
T Consensus       340 ~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  340 FVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            479999999999999999999999999999988775433223221 24578889999999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1303|consensus

Probab=97.91  E-value=2.1e-05  Score=73.46  Aligned_cols=68  Identities=19%  Similarity=0.285  Sum_probs=52.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH-HHHHHHHHhchhHHhHHHHH
Q psy4519           1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVI-FLIAVVGCYTGVQASVREIL   72 (236)
Q Consensus         1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~~G~~~~v~Gty~si~~ii   72 (236)
                      .+|+|+++++|+||+....+++++|+++|+.....++.. .+|+   .+..+ +++|+++.+.....++..++
T Consensus       367 ~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s-~~~~---~~~~~~~~~~~~~~v~~~~~~~~~li  435 (437)
T KOG1303|consen  367 SFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFS-PKWL---LNWVIILVVGLLLSVLAAVGGVRSLI  435 (437)
T ss_pred             hccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHH---HHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999885443322 2332   34444 67777777777777777776

>TIGR00814 stp serine transporter

Probab=97.89  E-value=0.00017  Score=66.76  Aligned_cols=98  Identities=17%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhh
Q psy4519         123 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR  202 (236)
Q Consensus       123 ~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r  202 (236)
                      .+.+..+.+|+|+|++|....+.||+..+++.++...+.+++..++.|..  +.+  +.|..++.|+.|..+        
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~--l~~--~~p~~~i~~~~~~~f--------   76 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFL--LSS--KNPCEDITEVVEEHF--------   76 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC--CCCCCCHHHHHHHHc--------
Confidence            67889999999999999999999999888888888888888888887763  322  234568999988775        


Q ss_pred             hhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519         203 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASN  234 (236)
Q Consensus       203 ~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n  234 (236)
                        ||+++.++.+.-.+..+..+.+|..-+++.
T Consensus        77 --Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~  106 (397)
T TIGR00814        77 --GKNWGILITLLYFFAIYPILLIYSVAITND  106 (397)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              788899999998888899988888665543

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>KOG3832|consensus

Probab=97.84  E-value=8.2e-05  Score=62.60  Aligned_cols=108  Identities=23%  Similarity=0.324  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcC-CCC------
Q psy4519         120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYE---------LCRRKR-IPS------  183 (236)
Q Consensus       120 ~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~---------~~~r~~-~~~------  183 (236)
                      .....-++|-++|+|-|+||.||..+||++++.++.+.+++++.+....++....         +++++. .+.      
T Consensus        15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas   94 (319)
T KOG3832|consen   15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS   94 (319)
T ss_pred             hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence            3456678889999999999999999999999999999999999998888776432         221110 000      


Q ss_pred             -------CCHH-------------------HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHH
Q psy4519         184 -------LTYP-------------------EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYL  228 (236)
Q Consensus       184 -------~sY~-------------------di~~~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~  228 (236)
                             ..|+                   ||..+. +.|.+....|.|.|-.+.-++++++.+|-...|-
T Consensus        95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkv-emgemasmffnkvgln~fyf~iiiylfgdlaiya  164 (319)
T KOG3832|consen   95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKV-EMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYA  164 (319)
T ss_pred             CCcEEEecCchhcccCCcceecccCCCCcceeehhh-hHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence                   1121                   121111 2355556667788888888888888888877774

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=96.58  E-value=0.027  Score=50.85  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519         116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS  195 (236)
Q Consensus       116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~  195 (236)
                      +.|.+|..+.++.+++|+|++.+|....+.+---+.+..++.+++......++.+...+      .|..+..|..++++ 
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~------~p~~~~~~~~~~~~-   74 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSK------FPEKNFSEILSKYL-   74 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHh-
Confidence            46889999999999999999999997654222223334455555555555555444322      23346777777665 


Q ss_pred             cCchhhhhhhhhHHHHHHHHHHHHhHhH
Q psy4519         196 EGPARFRWLAPYGRGLSFTAMIVDEIGA  223 (236)
Q Consensus       196 ~G~~~~r~~g~~g~~~v~~~i~~~~~G~  223 (236)
                               ||+...++.....+..+..
T Consensus        75 ---------Gk~~g~~~~~~~~~~~~~~   93 (359)
T TIGR00912        75 ---------GKILGRLLSILFILYFFLI   93 (359)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHH
Confidence                     5555555555444444333

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1305|consensus

Probab=96.09  E-value=0.0084  Score=55.78  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHH
Q psy4519           2 IPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIE   74 (236)
Q Consensus         2 iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~   74 (236)
                      +|+.+.+.+++||.+++.++|++|+++++...+.  +.+.+    ....+...+|++..+.|+...+.++..+
T Consensus       342 ~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  342 VPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREP----LGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             hccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7999999999999999999999999999887664  11111    2355566667888888888777777633

>PRK10655 potE putrescine transporter; Provisional

Probab=95.16  E-value=0.23  Score=46.02  Aligned_cols=57  Identities=11%  Similarity=0.134  Sum_probs=41.6

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVR  170 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~  170 (236)
                      ++++.+.+++....+.+++|+|++.+|..+.+.|-. +++..++.+++.........|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~~~a~~~ae   60 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSMALAYAFAK   60 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999988888863 455555555554444444433

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=94.94  E-value=0.37  Score=44.95  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             cCCCCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHH
Q psy4519         112 WLAPYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL  190 (236)
Q Consensus       112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~  190 (236)
                      +.+++.+..+..+..+.+++|+|++..| .+++++|.. +++..++.+++....+.    |..++.++... ..+..+-+
T Consensus         9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~----~~aEl~s~~P~-~Gg~~~~~   82 (452)
T TIGR01773         9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMR----MLGEMAVANPD-TGSFSTYA   82 (452)
T ss_pred             hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHH----HHHHHHHhcCC-CCCHHHHH
Confidence            3456789999999999999999999999 678899964 55555555555544333    44455443222 22444444


Q ss_pred             HHHh
Q psy4519         191 GAAL  194 (236)
Q Consensus       191 ~~~~  194 (236)
                      ++.+
T Consensus        83 ~~~~   86 (452)
T TIGR01773        83 DDAI   86 (452)
T ss_pred             HHHh
Confidence            4443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=94.89  E-value=0.32  Score=45.73  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=38.7

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSG-YLLGFLGTVAIGAFTTSCIQILVR  170 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G-~~~G~i~l~~~~~ls~yt~~lLv~  170 (236)
                      +++.+.+++....+.+++|+|++.+|......| ....++..++.+++.........|
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aE   63 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAI   63 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456999999999999999999999999876543 322234444555544444433333

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.79  E-value=0.55  Score=41.73  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CCcHHHHHHHHHHhhhhhhhhHHHHHHHhc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519         116 YGRYWDALSHMIKGALGTGILTMPHAFKDS---GYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA  192 (236)
Q Consensus       116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~---G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~  192 (236)
                      +.|..|...-+..+.+|+|++.+|....+.   ||+ +.++-.+.+.+..+....+.+       |  .|..+..|..++
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~ll~~~~~l~~~~l~~~l~~-------~--~p~~~l~~~~~~   70 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SVLLGGLIGLLLALLIYYLLK-------R--FPGKTLVEISEK   70 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHH-------H--CCCCCHHHHHHH
Confidence            357889999999999999999999976555   576 344444444444444444322       2  244678888877


Q ss_pred             HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHH
Q psy4519         193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALC  225 (236)
Q Consensus       193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~  225 (236)
                      .+          ||+...++.+...+..+....
T Consensus        71 ~~----------Gk~lg~ii~~~~~l~~l~~~~   93 (320)
T PF03845_consen   71 LF----------GKWLGKIINLLYILYFLLISA   93 (320)
T ss_pred             Hh----------CcHHHHHHHHHHHHHHHHHHH
Confidence            65          555555555544444444433

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=93.70  E-value=1.1  Score=41.80  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=32.4

Q ss_pred             cccCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcCh
Q psy4519         110 VRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGY  147 (236)
Q Consensus       110 ~~~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~  147 (236)
                      +.+.+++.+.+++....+.+++|+|++.+|......|.
T Consensus         3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~   40 (445)
T PRK10644          3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG   40 (445)
T ss_pred             CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH
Confidence            34566779999999999999999999999988887763

>TIGR00835 agcS amino acid carrier protein

Probab=93.64  E-value=1.1  Score=42.11  Aligned_cols=60  Identities=12%  Similarity=0.021  Sum_probs=40.7

Q ss_pred             CCCcHHHHHHHHHHhhhhhh-hhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         115 PYGRYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL  175 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~G-iL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~  175 (236)
                      ++.|.+|++...+.+.+|+| ++++|.|...+| ..+++-+-+.+++..-+.+.-+-..++.
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~y  105 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKY  105 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            45899999999999999998 999999988888 3344444444444443333333333344

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>TIGR00930 2a30 K-Cl cotransporter

Probab=93.44  E-value=0.26  Score=50.66  Aligned_cols=59  Identities=12%  Similarity=-0.023  Sum_probs=45.5

Q ss_pred             CCCCcHHHHHHHH-HHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHM-IKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ  172 (236)
Q Consensus       114 ~~~~s~~~a~~~l-~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~  172 (236)
                      .++.+++...+.. +..++|+|++ .+++...++|...+++..++.++++..+..-+.+-.
T Consensus        75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seia  135 (953)
T TIGR00930        75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIA  135 (953)
T ss_pred             CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777766665 8899999998 577888899988778888888888888876665543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=93.06  E-value=2  Score=39.86  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4519         112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK  179 (236)
Q Consensus       112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~  179 (236)
                      +++++.+.++.....+.+++|+|++.+|....+.|-. .++..++.++.    +..+..|..++..+.
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~----~l~~al~~aEL~s~~   64 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG----AMSLAYVYARLATKN   64 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhC
Confidence            3456789999999999999999999999999887753 33333333333    334445555665543

>TIGR00909 2A0306 amino acid transporter

Probab=93.05  E-value=1.1  Score=41.17  Aligned_cols=56  Identities=18%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhhHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         115 PYGRYWDALSHMIKGALGTGILTMPHAF-KDSGYLLGFLGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af-~~~G~~~G~i~l~~~~~ls~yt~~lLv~~  171 (236)
                      ++.+.+++..-.+.+++|+|++.+|... ..+|.. ..+..++.+++.........+.
T Consensus         3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el   59 (429)
T TIGR00909         3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAEL   59 (429)
T ss_pred             ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999998643 345543 3444555555555544444444

>PRK10249 phenylalanine transporter; Provisional

Probab=93.00  E-value=1.4  Score=41.40  Aligned_cols=58  Identities=19%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ  172 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~  172 (236)
                      +++.+.++..+-.+.+++|+|++..|- +.+++|.. .++..++.+++....+..+.+..
T Consensus        20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~   78 (458)
T PRK10249         20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMV   78 (458)
T ss_pred             hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999997665 66777863 56666666666655555554443

>PRK15049 L-asparagine permease; Provisional

Probab=92.91  E-value=2.7  Score=39.96  Aligned_cols=58  Identities=19%  Similarity=0.116  Sum_probs=42.2

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~  171 (236)
                      .+++.+.++..+-.+.+++|+|++..|- ++.++|-. +++..++.+++....+..+.|.
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaEL   84 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGEL   84 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888999999999999999997776 88888863 4555666666555555555443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=92.77  E-value=3.3  Score=38.90  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~  171 (236)
                      .+++.+.++...-.+.+++|+|++..|- +.+.+|-...++..++.+++.......+.|-
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aEL   71 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGEL   71 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566899999999999999999997766 4577885433555555555555555555443

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=92.64  E-value=2.7  Score=39.44  Aligned_cols=53  Identities=19%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQ  166 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~  166 (236)
                      .+++.+.++...-.+.+++|+|++-.|- +++++|. ..++..++.+++....+.
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~   71 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMR   71 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999998655 8889887 345555555555544443

>PRK10238 aromatic amino acid transporter; Provisional

Probab=91.65  E-value=2.4  Score=39.65  Aligned_cols=55  Identities=20%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQIL  168 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lL  168 (236)
                      .+++.+.++..+--+.+++|+|++-.|- +.+++|- ..++..++.+++....+..+
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~   65 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQL   65 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999987766 6677775 33444455555444444333

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=91.41  E-value=4.5  Score=37.93  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhhHHHHHH-HhcChhHHHHHHHHHHHHHHHHH
Q psy4519         115 PYGRYWDALSHMIKGALGTGILTMPHAF-KDSGYLLGFLGTVAIGAFTTSCI  165 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af-~~~G~~~G~i~l~~~~~ls~yt~  165 (236)
                      |+.+.+++....+.+++|+|++.+|... +.+|....++..++.++......
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~a   52 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALA   52 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999998864 45554333444455555444433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10836 lysine transporter; Provisional

Probab=90.74  E-value=6.9  Score=36.94  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ  172 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~  172 (236)
                      .+++.+.++.....+.+++|+|++..|- +.+++|....++..++.++++...+..+.|-.
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~   73 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELA   73 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456899999999999999999999886 78888875456666666776666665555543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=90.66  E-value=6.6  Score=36.66  Aligned_cols=59  Identities=19%  Similarity=0.084  Sum_probs=42.6

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ  172 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~  172 (236)
                      .+++.+.++.....+.+++|+|++.+|. +.+.+|.. ..+..++.+++....+..+.+..
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~   66 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMS   66 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999998876 56777863 46666666666666655554443

>PRK10746 putative transport protein YifK; Provisional

Probab=88.15  E-value=8.7  Score=36.06  Aligned_cols=57  Identities=14%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~  171 (236)
                      +++.+..+..+-.+.++||+|++..|. +.+.+|.. .++..++.+++....+..+.+.
T Consensus         9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl   66 (461)
T PRK10746          9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEM   66 (461)
T ss_pred             hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            456888999999999999999997554 77888873 4555666666655555555443

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=87.74  E-value=7.9  Score=36.25  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519         115 PYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA  193 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~  193 (236)
                      ++.+.++.....+.+++|+|++..| .+.+++|...-++..++.+++....+..+.|    +.++..+....|..-+++.
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aE----l~s~~P~~gG~~~~~~~~~   77 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGE----MATFYPVVSGSFATYASRF   77 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCCHHHHHHHH
Confidence            4578888889999999999999755 5778888543344455555555555544443    4333221223566666665


Q ss_pred             h
Q psy4519         194 L  194 (236)
Q Consensus       194 ~  194 (236)
                      +
T Consensus        78 ~   78 (478)
T TIGR00913        78 V   78 (478)
T ss_pred             c
Confidence            4

>PRK11021 putative transporter; Provisional

Probab=87.57  E-value=6.7  Score=35.97  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         118 RYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ  172 (236)
Q Consensus       118 s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~  172 (236)
                      +.+++....+.+++|+|++.+|- +.+.+|- ..++..++.+++.........|..
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~   56 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLG   56 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999998887 5566664 345555555555555555444443

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=87.14  E-value=4.2  Score=39.12  Aligned_cols=61  Identities=20%  Similarity=0.145  Sum_probs=50.8

Q ss_pred             CCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         115 PYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL  175 (236)
Q Consensus       115 ~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~  175 (236)
                      ++...-.-.+--+...||||++ +.-.+.+++|-..-++..++++.+.+..|.-|.+.+..+
T Consensus        44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~  105 (541)
T COG0833          44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY  105 (541)
T ss_pred             hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455555667778899999998 899999999999889999999999999888888876554

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=86.10  E-value=12  Score=36.21  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=37.6

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHHHH--HHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMPHA--FKDSGYLLGFLGTVAIGAFTTSCIQILVR  170 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~a--f~~~G~~~G~i~l~~~~~ls~yt~~lLv~  170 (236)
                      +++.+.++....-+.+++|+|++.+|-.  ...+|.. ..+..++.++.+........+
T Consensus        27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaE   84 (557)
T TIGR00906        27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAE   84 (557)
T ss_pred             hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999863  3457754 244444444544444433333

>TIGR00908 2A0305 ethanolamine permease

Probab=84.87  E-value=21  Score=33.03  Aligned_cols=58  Identities=9%  Similarity=0.033  Sum_probs=36.5

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVR  170 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~  170 (236)
                      .+++.+.++...-.+.+++|....+.+.++..+|+..-.+..++.+++....+..+.|
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aE   62 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAE   62 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888888888888888844456688889999864344444444443333333333

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=84.14  E-value=35  Score=31.51  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519         116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT--TSCIQILVRAQYELCRRKRIPSLTYPEILGAA  193 (236)
Q Consensus       116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls--~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~  193 (236)
                      +++.+..+-|=..++-|+|=+-=|-.=..-||+++.+-+++-+++.  .|=+.-+.-+.     |+  ...|..|++++-
T Consensus        51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv-----R~--~G~Si~~i~~~~  123 (376)
T PF02554_consen   51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV-----RH--KGKSIGEIAGKY  123 (376)
T ss_pred             CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh-----cC--CCccHHHHHHHH
Confidence            4555667778888999999998888779999999877776655442  22222222221     22  235888888765


Q ss_pred             hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519         194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASN  234 (236)
Q Consensus       194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n  234 (236)
                                .||.+|.+..+++.+..+-+..++...+++.
T Consensus       124 ----------lG~~~~~lf~~f~~~~lilV~avF~~v~a~~  154 (376)
T PF02554_consen  124 ----------LGKRAKKLFLIFIFFLLILVIAVFADVVANT  154 (376)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      4778899999988888888888887766553

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>TIGR00911 2A0308 L-type amino acid transporter

Probab=84.04  E-value=5.8  Score=37.53  Aligned_cols=59  Identities=17%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             cCCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHH--HHHHHHHHHHHHHHHHHHHH
Q psy4519         112 WLAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGF--LGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~--i~l~~~~~ls~yt~~lLv~~  171 (236)
                      +.+++.+.+++..-.+.+++|+|++..|. +.+++|-. |.  +..++.+++....+....+.
T Consensus        39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aEL  100 (501)
T TIGR00911        39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAEL  100 (501)
T ss_pred             ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566899999999999999999998876 46667743 32  33344455444444444443

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=83.77  E-value=22  Score=33.72  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=71.0

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA  192 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~  192 (236)
                      +++.++.+--+--+.+.||||.+ +--.+.+.+|.-. ++..++.+++.+.-|+.|.+....     +....|+.+.++.
T Consensus        12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~-----~p~~gSF~~~a~~   85 (462)
T COG1113          12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVA-----NPVSGSFSDYARK   85 (462)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHHH
Confidence            34566666667778899999987 7778999999774 677788888888888888775422     2234689999988


Q ss_pred             HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHH
Q psy4519         193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYL  228 (236)
Q Consensus       193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~  228 (236)
                      .+  ||.+ -.+-.|-.++.-+.......-....|+
T Consensus        86 ~l--G~~A-gf~tgW~YW~~wv~v~~ae~tAi~~y~  118 (462)
T COG1113          86 YL--GPWA-GFLTGWTYWFFWVLVGIAELTAIGIYL  118 (462)
T ss_pred             Hh--cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86  7743 223334455555555554444444443

>PRK15015 carbon starvation protein A; Provisional

Probab=80.94  E-value=23  Score=35.16  Aligned_cols=96  Identities=18%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCc
Q psy4519         121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT--TSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGP  198 (236)
Q Consensus       121 ~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls--~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~  198 (236)
                      --+-|=+.++-|+|=+-=|-.-.+-||+++.+-+++-+++.  .+=+..|.-+.     |+  +..|..|+++.-     
T Consensus        87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~-----R~--~GrSig~ia~~~-----  154 (701)
T PRK15015         87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST-----RR--DGRSLGELVKEE-----  154 (701)
T ss_pred             chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee-----cC--CCccHHHHHHHH-----
Confidence            34557788899999998898778999999988877665442  23333333321     22  224777777654     


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519         199 ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS  233 (236)
Q Consensus       199 ~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~  233 (236)
                           .|+.++.+..+.+.+...=...++-..+++
T Consensus       155 -----iG~~~~~lfli~i~~iliiviAvfalvvv~  184 (701)
T PRK15015        155 -----MGPTAGVIALVACFMIMVIILAVLAMIVVK  184 (701)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 467778777777766666666666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 42/169 (24%)

Query: 23  SLPALTDLITFWSSHH-----GLSKALFITKHVVIFLIAVVGCYTGVQASVREILI---- 73
            L  L ++    ++          K L  T+   +     +   T    S+    +    
Sbjct: 246 CLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTP 300

Query: 74  -EVFKVVAQYVLCKKKKIPS---LTYPE----IAETALSEGPPSVRWLAPYGRYW----- 120
            EV  ++ +Y+ C+ + +P     T P     IAE ++ +G     W       W     
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGL--ATW-----DNWKHVNC 352

Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLG-FLGTVAIGAFTTSCIQIL 168
           D L+ +I+ +L   +L  P  ++     L  F  +  I    T  + ++
Sbjct: 353 DKLTTIIESSL--NVLE-PAEYRKMFDRLSVFPPSAHI---PTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	96.76
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	92.45

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=96.76  E-value=0.019  Score=51.33  Aligned_cols=101  Identities=7%  Similarity=-0.034  Sum_probs=64.3

Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519         113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA  192 (236)
Q Consensus       113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~  192 (236)
                      ++++.+.+++....+.+++|+|++.+|....++|.. +.+..++.+++.........+..    ++... ..++-+..++
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~----~~~p~-~Gg~y~~~~~   79 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMS----FLDPS-PGGSYAYARR   79 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHH----HHCCC-TTTHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHH----ccCCC-CCCchhhHHh
Confidence            346789999999999999999999999988888974 67777777777666665554443    32222 1234344444


Q ss_pred             HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHH
Q psy4519         193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLL  229 (236)
Q Consensus       193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i  229 (236)
                      .          +|+....++.....+.......++..
T Consensus        80 ~----------~G~~~g~~~g~~~~~~~~~~~~~~~~  106 (445)
T 3l1l_A           80 C----------FGPFLGYQTNVLYWLACWIGNIAMVV  106 (445)
T ss_dssp             H----------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H----------cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4          34555666665555554444444433

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=92.45  E-value=1.9  Score=38.16  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519         114 APYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRA  171 (236)
Q Consensus       114 ~~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~  171 (236)
                      +++.+.+++....+.+++|+|++..| .+...+|. ...+..++.++++..+...+.+.
T Consensus         5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el   62 (444)
T 3gia_A            5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKL   62 (444)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999876 45666776 45666666666666665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00