Psyllid ID: psy4524
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BHK3 | 478 | Proton-coupled amino acid | yes | N/A | 0.315 | 0.612 | 0.376 | 2e-43 | |
| Q4KL91 | 522 | Proton-coupled amino acid | N/A | N/A | 0.319 | 0.568 | 0.347 | 2e-42 | |
| Q7Z2H8 | 476 | Proton-coupled amino acid | yes | N/A | 0.344 | 0.672 | 0.338 | 8e-42 | |
| Q8CH36 | 500 | Proton-coupled amino acid | no | N/A | 0.347 | 0.646 | 0.319 | 3e-41 | |
| Q8K415 | 481 | Proton-coupled amino acid | yes | N/A | 0.318 | 0.615 | 0.371 | 9e-41 | |
| Q495M3 | 483 | Proton-coupled amino acid | no | N/A | 0.320 | 0.616 | 0.355 | 5e-40 | |
| Q6YBV0 | 504 | Proton-coupled amino acid | no | N/A | 0.356 | 0.656 | 0.307 | 8e-40 | |
| Q8K4D3 | 475 | Proton-coupled amino acid | no | N/A | 0.360 | 0.705 | 0.342 | 2e-39 | |
| Q924A5 | 475 | Proton-coupled amino acid | no | N/A | 0.332 | 0.650 | 0.351 | 8e-39 | |
| Q4V8B1 | 477 | Proton-coupled amino acid | no | N/A | 0.320 | 0.624 | 0.326 | 5e-33 |
| >sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 168/313 (53%), Gaps = 20/313 (6%)
Query: 603 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 662
+ L H++KG +GTGIL +P A K++G L+G L + +G C+ ILVR C R
Sbjct: 52 FQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRL 111
Query: 663 RIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQV 721
P + Y + + L+ P A + A +GR + +IV ++G CVY++F+A NL QV
Sbjct: 112 NKPFMDYGDTVMHGLAFSPNAWLQNHAHWGRRVVSFFLIVTQLGFCCVYIVFLADNLKQV 171
Query: 722 CVRFWGVT---------------DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMF 766
T D RLYML P L L+ +V NL+ + FS A M
Sbjct: 172 VEAVNSTTISCHKNETVVLTPTMDSRLYMLSFLPVLGLLVFVRNLRVLTIFSLLANISML 231
Query: 767 VSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFT 826
VSL I YI+ + P S V PLF G +FS SIGV +PLEN+M+ R F
Sbjct: 232 VSLVIIAQYIIQEIPDASQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDARGFP 291
Query: 827 ARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILF 886
+L++ +I TT++ A G L YL++GD+++ SITLNLP L SVKLL V IL
Sbjct: 292 T---ILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLP-NCWLYQSVKLLYVVGILC 347
Query: 887 TFALPHFIVYDIV 899
T+AL ++ +I+
Sbjct: 348 TYALQFYVPAEII 360
|
Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Mus musculus (taxid: 10090) |
| >sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 177/319 (55%), Gaps = 22/319 (6%)
Query: 596 SKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 655
+K L ++ L H++KG +GTG+L +P A K++G LLG + + G + C+ ILVR
Sbjct: 83 NKDGLTFFQTLIHLLKGNIGTGLLGLPLAMKNAGVLLGPISLLFFGIISIHCMNILVRCS 142
Query: 656 YELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIA 715
+ LC+R + +L Y + +G AL GP + A +GR L ++V ++G VY +F+A
Sbjct: 143 HFLCQRYKKANLGYSDTVGLALEVGPGVLQRHASFGRNLVDWFLVVTQLGFCSVYFVFLA 202
Query: 716 SNLSQVCVRF------------WGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATG 763
N+ QV F W + DLR+YM P ++ + ++ +LK + S A
Sbjct: 203 ENIKQVFEVFLETKLQQSEIGIWSL-DLRIYMFSFLPLIIPLVFIRDLKNLSLLSFFANV 261
Query: 764 VMFVSLAITMYYILGDFPSFSD-RT-PVG-HLSDLPLFVGVTLFSLSSIGVTMPLENEMQ 820
M +SL I Y++ + SD RT P+G PLF G +F+ IGV +PLEN M+
Sbjct: 262 SMAISLLIVYQYVIRN---LSDPRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLENRMR 318
Query: 821 HPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLL 880
+ F+ LN+ AI TT++ + L Y +GD+++GSITLNLPQ+ L VK+L
Sbjct: 319 DKKDFSK---ALNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILY 375
Query: 881 SVSILFTFALPHFIVYDIV 899
S I T+A+ +++ +I+
Sbjct: 376 SFGIYVTYAIQYYVPAEII 394
|
Xenopus laevis (taxid: 8355) |
| >sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 182/346 (52%), Gaps = 26/346 (7%)
Query: 602 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 661
++ L H++KG +GTG+L +P A K++G ++G + + IG C+ ILV+ + CRR
Sbjct: 49 WFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRR 108
Query: 662 KRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQ 720
+ Y + + L P + R A +GR + +IV ++G CVY +F+A N Q
Sbjct: 109 LNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQ 168
Query: 721 VCVRFWGVT---------------DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVM 765
V G T D RLYML P L+L+ ++ NL+ + FS A M
Sbjct: 169 VIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITM 228
Query: 766 FVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQF 825
VSL + +I+ P S V PLF G +FS IG+ +PLEN+M+ PR+F
Sbjct: 229 LVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKF 288
Query: 826 TARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSIL 885
+L + I T ++ + G L YL++G +QGSITLNLP L SVKLL S+ I
Sbjct: 289 PL---ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPN-CWLYQSVKLLYSIGIF 344
Query: 886 FTFALPHFIVYDIVWNRYLKLRMNKSPSHTAL--EYGFRTLIVVIT 929
FT+AL ++ +I+ + ++++P H L + RT++V +T
Sbjct: 345 FTYALQFYVPAEII----IPFFVSRAPEHCELVVDLFVRTVLVCLT 386
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Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid. Homo sapiens (taxid: 9606) |
| >sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 184/347 (53%), Gaps = 24/347 (6%)
Query: 602 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRR 661
+ L H++KG +GTG+L +P A K++G +LG + V IG + C+ ILVR + LC+R
Sbjct: 58 FLQTLVHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQR 117
Query: 662 KRIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQ 720
+ +L Y + + A+ P + + A +GR + +++ ++G VY++F+A N+ Q
Sbjct: 118 FKKSTLGYSDTVSFAMEASPWSCLQRQAAWGRQVVDFFLVITQLGFCSVYIVFLAENVKQ 177
Query: 721 VCVRFWGVT------------------DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSAT 762
V F G T DLR+YML P ++L+ ++ LK + S A
Sbjct: 178 VHEGFLGSTPIVSNGSDLSHACERRSVDLRVYMLCFLPLIILLVFIRELKNLFVLSFLAN 237
Query: 763 GVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHP 822
M SL I Y++ + P + V PLF G +F+ IGV +PLEN+M+
Sbjct: 238 ISMAASLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRES 297
Query: 823 RQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSV 882
++F LN+ AI T ++ + L Y+ + DE++GSITLNLPQ+ L SVK+L S
Sbjct: 298 KRFPQ---ALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSF 354
Query: 883 SILFTFALPHFIVYDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
I T+++ ++ +I+ + R++ E+G R+L+V IT
Sbjct: 355 GIFVTYSIQFYVPAEIIIPG-VTARLHAKWKRIC-EFGIRSLLVSIT 399
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Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Mus musculus (taxid: 10090) |
| >sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 168/320 (52%), Gaps = 24/320 (7%)
Query: 598 KPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYE 657
K + + L H++KG +GTGIL +P A K++G L+G L + +G C+ ILVR
Sbjct: 50 KGITGFQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQR 109
Query: 658 LCRRKRIPSLTYPEILGAALSEGPARFRWL---APYGRGLSFTAMIVDEIGALCVYLLFI 714
C R P + Y + + L+ P WL A +GR +IV ++G CVY++F+
Sbjct: 110 FCHRLNKPFMDYGDTVMHGLASSPNT--WLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFL 167
Query: 715 ASNLSQVCVRFWGVT---------------DLRLYMLVLFPPLLLISWVPNLKYIVPFSS 759
A NL QV T D RLYML P L L+ ++ NL+ + FS
Sbjct: 168 ADNLKQVVEAVNSTTISCHKNETVVLTPTIDSRLYMLAFLPVLGLLVFIRNLRVLTIFSL 227
Query: 760 SATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEM 819
A M VSL I YI+ P S V PLF G +FS SIGV +PLEN+M
Sbjct: 228 LANVSMLVSLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKM 287
Query: 820 QHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLL 879
+ R+F +L++ +I TT++ A G L YL++GD+++ SITLNLP L SVKLL
Sbjct: 288 KDARRFPT---ILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLP-NCWLYQSVKLL 343
Query: 880 LSVSILFTFALPHFIVYDIV 899
V IL T AL ++ +I+
Sbjct: 344 YVVGILCTHALQFYVPAEII 363
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Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid. Rattus norvegicus (taxid: 10116) |
| >sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 170/318 (53%), Gaps = 20/318 (6%)
Query: 598 KPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYE 657
K + + AL H++KG +GTGIL +P A K++G L+G L + +G C+ ILV+
Sbjct: 52 KGITVFQALIHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGFIACHCMHILVKCAQR 111
Query: 658 LCRRKRIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 716
C+R P + Y + + L P A + A +GR + +I+ ++G CVY++F+A
Sbjct: 112 FCKRLNKPFMDYGDTVMHGLEANPNAWLQNHAHWGRHIVSFFLIITQLGFCCVYIVFLAD 171
Query: 717 NLSQVCVRFWGVT---------------DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSA 761
NL QV T D RLYML P L+L+ + NL+ + FS A
Sbjct: 172 NLKQVVEAVNSTTNNCYSNETVILTPTMDSRLYMLSFLPFLVLLVLIRNLRILTIFSMLA 231
Query: 762 TGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQH 821
M VSL I + YI + P S V PLF G +FS SIGV +PLEN+M++
Sbjct: 232 NISMLVSLVIIIQYITQEIPDPSRLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKN 291
Query: 822 PRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLS 881
R F A +L++ +I T+++ L YL++GD+++ SI+LNLP L SVKLL
Sbjct: 292 ARHFPA---ILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLPN-CWLYQSVKLLYI 347
Query: 882 VSILFTFALPHFIVYDIV 899
IL T+AL ++ +I+
Sbjct: 348 AGILCTYALQFYVPAEII 365
|
Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine. Homo sapiens (taxid: 9606) |
| >sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 187/367 (50%), Gaps = 36/367 (9%)
Query: 588 VAGNLKAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSC 647
V + + ++ + + L H++KG +GTG+L +P A K++G +LG + V IG + C
Sbjct: 47 VQKHYQLDDQEGISFVQTLMHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHC 106
Query: 648 IQILVRAQYELCRRKRIPSLTYPEILGAALSEGP-ARFRWLAPYGRGLSFTAMIVDEIGA 706
+ ILVR + LC R + +L Y + + A+ P + + A +GR + +++ ++G
Sbjct: 107 MHILVRCSHFLCLRFKKSTLGYSDTVSFAMEVSPWSCLQKQAAWGRSVVDFFLVITQLGF 166
Query: 707 LCVYLLFIASNLSQV--------------------CVRFWGVTDLRLYMLVLFPPLLLIS 746
VY++F+A N+ QV C R DLR+YML P ++L+
Sbjct: 167 CSVYIVFLAENVKQVHEGFLESKVFISNSTNSSNPCER--RSVDLRIYMLCFLPFIILLV 224
Query: 747 WVPNLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSL 806
++ LK + S A M VSL I Y++ + P + V PLF G +F+
Sbjct: 225 FIRELKNLFVLSFLANVSMAVSLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAF 284
Query: 807 SSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNL 866
IGV +PLEN+M+ ++F LN+ I TT++ L Y+ + DE++GSITLNL
Sbjct: 285 EGIGVVLPLENQMKESKRFPQ---ALNIGMGIVTTLYVTLATLGYMCFHDEIKGSITLNL 341
Query: 867 PQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLRMNKSPSHTA----LEYGFR 922
PQ+ L SVK+L S I T+++ ++ +I+ + S HT E+G R
Sbjct: 342 PQDVWLYQSVKILYSFGIFVTYSIQFYVPAEII------IPGITSKFHTKWKQICEFGIR 395
Query: 923 TLIVVIT 929
+ +V IT
Sbjct: 396 SFLVSIT 402
|
Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine. Homo sapiens (taxid: 9606) |
| >sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 190/362 (52%), Gaps = 27/362 (7%)
Query: 587 FVAGNLKAVSKKPLVYW-DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTT 645
F G+ + + + + W L H++KG +GTG+L +P A K++G LLG L + IG
Sbjct: 32 FSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAV 91
Query: 646 SCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEI 704
C+ ILV+ + LCRR P L Y + + L P+ + R + +GR + +IV ++
Sbjct: 92 HCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWVRNHSHWGRRIVDFFLIVTQL 151
Query: 705 GALCVYLLFIASNLSQVCVRFWG---------------VTDLRLYMLVLFPPLLLISWVP 749
G CVY +F+A N QV G D RLYML P L+L+S++
Sbjct: 152 GFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPFLVLLSFIR 211
Query: 750 NLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSI 809
NL+ + FS A MFVSL + +I+ P S V PLF G +F+ I
Sbjct: 212 NLRVLSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGI 271
Query: 810 GVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQE 869
GV +PLEN+M+ ++F +L + AI T ++ + G L YL++G ++GSITLNLP
Sbjct: 272 GVVLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPN- 327
Query: 870 DTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLRMNKSPSHTAL--EYGFRTLIVV 927
L SVKLL S+ I FT+AL ++ +I+ + +++ P H L + RT +V
Sbjct: 328 CWLYQSVKLLYSIGIFFTYALQFYVAAEII----IPAIVSRVPEHFELMVDLCVRTAMVC 383
Query: 928 IT 929
+T
Sbjct: 384 VT 385
|
Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid. Mus musculus (taxid: 10090) |
| >sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 177/330 (53%), Gaps = 21/330 (6%)
Query: 587 FVAGNLKAVSKKPLVYW-DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTT 645
F G+ + + + + W L H++KG +GTG+L +P A K++G LLG L + IG
Sbjct: 32 FSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAV 91
Query: 646 SCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEI 704
C+ ILV+ + LCRR P L Y + + L P+ + R + +GR + ++V ++
Sbjct: 92 HCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWIRNHSHWGRRIVDFFLVVTQL 151
Query: 705 GALCVYLLFIASNLSQVC---------------VRFWGVTDLRLYMLVLFPPLLLISWVP 749
G CVY +F+A N QV V D RLYML P L+L+S++
Sbjct: 152 GFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMDSRLYMLTFLPFLVLLSFIR 211
Query: 750 NLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSI 809
NL+ + FS A MFVSL + +I+ P S V PLF G +F+ I
Sbjct: 212 NLRILSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGI 271
Query: 810 GVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQE 869
GV +PLEN+M+ ++F +L + AI T ++ + G L YL++G +++GSITLNLP
Sbjct: 272 GVVLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPN- 327
Query: 870 DTLAVSVKLLLSVSILFTFALPHFIVYDIV 899
L SVKLL S+ I FT+AL ++ +I+
Sbjct: 328 CWLYQSVKLLYSIGIFFTYALQFYVAAEII 357
|
Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons. Rattus norvegicus (taxid: 10116) |
| >sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 163/325 (50%), Gaps = 27/325 (8%)
Query: 597 KKPLVYWDALS------HMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQI 650
KKP DAL H++K +GTG L +P A K++G L+G + +AIGA T C+ I
Sbjct: 41 KKPRRKADALMFIQIFIHLLKSNIGTGFLGLPLAVKNAGLLVGPVSLLAIGALTVHCMDI 100
Query: 651 LVRAQYELCRRKRIPSLTYPEILGAALSEGPARF-RWLAPYGRGLSFTAMIVDEIGALCV 709
L+ L R + + Y E +L P+ + R + +GR + +IV ++G V
Sbjct: 101 LLNCACHLTSRLQRSFVNYEETTMYSLETCPSPWLRTHSVWGRYVVSFLLIVTQLGFCSV 160
Query: 710 YLLFIASNLSQVCVR---------------FWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754
Y +F+A NL Q+ + D R YML + P L+L+ V N + +
Sbjct: 161 YFMFMADNLQQIVEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLVQNPQVL 220
Query: 755 VPFSSSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMP 814
FS+ AT SLA+ Y++ P S V LF G +F+ +G+ +P
Sbjct: 221 SIFSTLATITTLSSLALIFEYLI-QIPHHSHLPLVASWKTFLLFFGTAIFTFEGVGMVLP 279
Query: 815 LENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAV 874
L+++M+ P+QF A VL + + ++ G L Y+K+G + Q SITLNLP L
Sbjct: 280 LKSQMKSPQQFPA---VLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNLP-NCWLYQ 335
Query: 875 SVKLLLSVSILFTFALPHFIVYDIV 899
SVKL+ SV I FT+AL + +I+
Sbjct: 336 SVKLMYSVGIFFTYALQFHVPAEII 360
|
Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| 350537367 | 510 | uncharacterized protein LOC100159152 [Ac | 0.357 | 0.650 | 0.485 | 2e-85 | |
| 345495702 | 486 | PREDICTED: proton-coupled amino acid tra | 0.358 | 0.685 | 0.431 | 4e-76 | |
| 242022478 | 505 | proton-coupled amino acid transporter, p | 0.354 | 0.651 | 0.415 | 9e-75 | |
| 383861316 | 481 | PREDICTED: proton-coupled amino acid tra | 0.358 | 0.692 | 0.423 | 4e-74 | |
| 340711974 | 476 | PREDICTED: proton-coupled amino acid tra | 0.258 | 0.504 | 0.422 | 6e-74 | |
| 195440198 | 488 | GK11241 [Drosophila willistoni] gi|19416 | 0.358 | 0.682 | 0.437 | 2e-73 | |
| 307204534 | 404 | Proton-coupled amino acid transporter 1 | 0.342 | 0.787 | 0.418 | 2e-73 | |
| 350402641 | 488 | PREDICTED: proton-coupled amino acid tra | 0.258 | 0.491 | 0.419 | 6e-73 | |
| 170050820 | 475 | amino acid transporter [Culex quinquefas | 0.287 | 0.562 | 0.526 | 5e-71 | |
| 157115457 | 475 | amino acid transporter [Aedes aegypti] g | 0.358 | 0.701 | 0.431 | 7e-71 |
| >gi|350537367|ref|NP_001233210.1| uncharacterized protein LOC100159152 [Acyrthosiphon pisum] gi|334884064|gb|AEH21125.1| amino acid transporter [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/334 (48%), Positives = 229/334 (68%), Gaps = 2/334 (0%)
Query: 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
K P Y+D L H++K +LGTGIL MP AFK++GY++G LGT+ IG T I +LV A +
Sbjct: 94 KHPTTYFDTLIHLLKASLGTGILAMPSAFKNAGYVVGTLGTIIIGILCTFTIHLLVTASH 153
Query: 657 ELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 716
ELC R+++PSLTYP + AA EGP R LAPY R ++ +++ +IG+ CVY++FIAS
Sbjct: 154 ELCIRRKVPSLTYPGTVAAAFEEGPKFTRILAPYARMMTNMFLVLYQIGSSCVYVVFIAS 213
Query: 717 NLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY 775
NL V + G TD+R+YM+ + PL+LISWV NLK + PFSS AT + VS + YY
Sbjct: 214 NLKVVGDAYLGGNTDVRMYMVYILIPLILISWVRNLKLLAPFSSIATCLTVVSFTLIFYY 273
Query: 776 ILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
I + PSF+DR PVG + +PLF G LF++ +IG+ +PLENEM++P++F + GVLN S
Sbjct: 274 IFREAPSFTDREPVGTVKSIPLFFGTVLFAMEAIGMVLPLENEMKNPKKFGSVFGVLNAS 333
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
+T++ GLL YLKYGD+ GSITL++PQ + L+ VKLLLS SI T+AL +++
Sbjct: 334 MLPISTLYLIVGLLGYLKYGDKTTGSITLDMPQTEVLSQVVKLLLSASIYITYALSNYVA 393
Query: 896 YDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
+DIVW + ++ +M K+ EY RT IV++T
Sbjct: 394 FDIVW-KGMEQKMEKNEHRICWEYALRTSIVIVT 426
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495702|ref|XP_001606233.2| PREDICTED: proton-coupled amino acid transporter 4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 222/336 (66%), Gaps = 3/336 (0%)
Query: 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
+ P +W+ L H++KG+LGTGIL MP AF+++GY++G +GT+ IG T CI++L++++Y
Sbjct: 67 QHPTTFWETLFHLMKGSLGTGILAMPKAFENAGYVVGTIGTIIIGLLCTYCIRVLIKSEY 126
Query: 657 ELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 716
ELC+R+++PS+TYP + A+L EGP R + Y + T ++V ++G CVY +FIA
Sbjct: 127 ELCKRRKVPSMTYPGTMQASLEEGPKCLRRFSKYCPHICNTFLMVYQLGTCCVYTVFIAE 186
Query: 717 NLSQVCVRFWGVT-DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY 775
NL + + DLR YML L PL+LI+WV NLK + P S+ A V F S AI +YY
Sbjct: 187 NLKKAMDNYVNPDIDLRFYMLALLLPLILINWVRNLKLLAPLSTIANFVTFASFAIILYY 246
Query: 776 ILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
+ D F+ R +G +++ PLF+G LF+L +IGV MPLENEM+ P++F GVLN+
Sbjct: 247 LFRDPIDFTGRQTIGDVANFPLFLGTVLFALEAIGVIMPLENEMKQPKKFMNPCGVLNIG 306
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
A+N ++ G Y+KYGD+V G+IT NLP+++ L+ V++LL+++I T +L ++
Sbjct: 307 MALNIILYVGIGFFGYIKYGDKVYGTITTNLPEDEVLSSVVQILLALAIFVTHSLQCYVA 366
Query: 896 YDIVWNRYLKLRMNKSPSHTAL--EYGFRTLIVVIT 929
DI WN Y++ RM + + L EY RT IV++T
Sbjct: 367 IDISWNEYIQPRMKHTSNLNQLIWEYVVRTCIVILT 402
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242022478|ref|XP_002431667.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] gi|212516975|gb|EEB18929.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 205/330 (62%)
Query: 593 KAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILV 652
+ V P + L H++KG+LGTGIL MP+AF +SG+ LG +GT+ IG T CI +L+
Sbjct: 84 ERVVDHPTTNTETLLHLLKGSLGTGILAMPNAFHNSGWALGLVGTIVIGIICTFCIHLLI 143
Query: 653 RAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLL 712
+++YELC+R+R+P+L YP A L EGPA F +AP + ++ ++G CVY++
Sbjct: 144 KSEYELCKRRRLPALNYPATAEAGLQEGPAFFNKVAPISGHVVNFFILAYQLGICCVYVV 203
Query: 713 FIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAIT 772
F+ASN+ V +W D+R+YM++ PL+LI++V NLKY+ PFS+ + + F+ IT
Sbjct: 204 FVASNVKDVVDVYWYKMDVRIYMVIFLLPLILINYVRNLKYLAPFSAVSNIITFIGFGIT 263
Query: 773 MYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVL 832
+YYI + +R +G + + PLF G LFSL +IGV MPLENEM+ P+ F GVL
Sbjct: 264 LYYIFSELHGLDEREAIGEVQNWPLFFGTVLFSLEAIGVIMPLENEMKSPKSFGKPFGVL 323
Query: 833 NVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPH 892
NV+ + ++ G YL+YG+ GSITLN+P ED LA VK+ ++ +I T AL +
Sbjct: 324 NVAMGLIIVLYVGMGFFGYLRYGENALGSITLNIPSEDPLAQVVKITMAFAIFITHALQN 383
Query: 893 FIVYDIVWNRYLKLRMNKSPSHTALEYGFR 922
++ DI+WN YL K+ E+ R
Sbjct: 384 YVAIDIIWNGYLAPSFEKNAHKLYYEFAVR 413
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861316|ref|XP_003706132.1| PREDICTED: proton-coupled amino acid transporter 4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 211/335 (62%)
Query: 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 654
V P + + L H++KG+LGTGIL MP AF +SGY +G + T+ IG F T C++ILV +
Sbjct: 66 VVTHPTTFAETLLHLLKGSLGTGILAMPSAFHNSGYAVGTVATIIIGMFCTYCMRILVNS 125
Query: 655 QYELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFI 714
+YELC+RK++PSL+Y AALS GP R A + ++V ++G CVY +FI
Sbjct: 126 EYELCKRKKVPSLSYHGTAEAALSVGPVPLRRFAKPSIHVINVFLLVYQLGTCCVYTVFI 185
Query: 715 ASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMY 774
+NL + + D+RLYM+ + PL+L++W+ NLK++ P S+ A + S +I +Y
Sbjct: 186 GTNLEKALNDYLPNMDVRLYMVAILVPLILVNWIRNLKFLAPCSTIANFITLASFSIILY 245
Query: 775 YILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNV 834
YI + S DR P+GH+++ PL+ G LF+L +IGV MPLENEM+ P++F + GVLNV
Sbjct: 246 YIFREPLSLEDREPIGHVTNFPLYFGTVLFALEAIGVVMPLENEMKKPKKFMSLFGVLNV 305
Query: 835 SSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFI 894
+ ++ GL Y++YG EV GSITL L + + L SV+LLLS++I FT + ++
Sbjct: 306 GMSTIVVLYTVIGLFGYIRYGSEVGGSITLKLGEHEILGQSVQLLLSLAIFFTHPIQCYV 365
Query: 895 VYDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
DIVWN Y+ ++ K+ EY RT IV+ T
Sbjct: 366 AIDIVWNEYIAPKLEKNSRKLLWEYVLRTSIVLST 400
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340711974|ref|XP_003394540.1| PREDICTED: proton-coupled amino acid transporter 4-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 205/331 (61%)
Query: 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 658
P W+ L H++KG+LGTGIL MP AF SGY +G + T+ IG F T C++ILV +YEL
Sbjct: 65 PTTSWETLLHLLKGSLGTGILAMPKAFYHSGYGIGIVATIIIGLFCTYCMRILVSCEYEL 124
Query: 659 CRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 718
C+RKR+ SL+YP AAL EGPA FR A ++V ++G CVY +FIA+NL
Sbjct: 125 CKRKRVASLSYPATAEAALLEGPAPFRRFAKASTHTINAFLMVYQLGTCCVYTVFIATNL 184
Query: 719 SQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILG 778
+ D+RLYML + PL+L++W+ NLK++ P S+ A + FVS +I +YYI
Sbjct: 185 QLALKTYVSDIDVRLYMLAILIPLILVNWIRNLKFLAPCSTVANFITFVSFSIILYYIFR 244
Query: 779 DFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAI 838
+ SF +R +G++ + PL+ G LF+L +IGV MPLENEM+ P+ F GVLN+ +
Sbjct: 245 EPLSFENREVIGNVENFPLYFGTVLFALEAIGVVMPLENEMKKPKTFMRTFGVLNIGMGV 304
Query: 839 NTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDI 898
++ G Y++YG ++GSIT NL + LA SV++LL+++I FT + ++ DI
Sbjct: 305 IVALYTGLGFFGYIRYGSGIKGSITFNLDEPLALAKSVQILLAIAIFFTHPIQCYVAIDI 364
Query: 899 VWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
+W YL + K+ EY RT +V+ T
Sbjct: 365 IWKDYLAPNLEKNSHKLLWEYALRTSLVLFT 395
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195440198|ref|XP_002067929.1| GK11241 [Drosophila willistoni] gi|194164014|gb|EDW78915.1| GK11241 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/334 (43%), Positives = 212/334 (63%), Gaps = 1/334 (0%)
Query: 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
+ P + L H++KG+LGTGIL MP+AFK+SGY+ G +GT+ IG T CI LV+A++
Sbjct: 73 EHPTTNAETLFHLLKGSLGTGILAMPNAFKNSGYVTGSIGTIVIGFICTYCIHQLVKAEF 132
Query: 657 ELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 716
ELCRRK++P++ YP + AAL+EGP+ FR +PY + T +++ ++G CVY++F+AS
Sbjct: 133 ELCRRKKMPAMNYPAVAEAALNEGPSCFRSCSPYIGTVVNTFLLIYQLGTCCVYVVFVAS 192
Query: 717 NLSQVCVRFWGVT-DLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY 775
N+ + W D+RL M+++ PL+LI+WV NLKY+ PFS+ A + VS I YY
Sbjct: 193 NIKSIVDAVWETNVDVRLCMIIILVPLILINWVRNLKYLAPFSTLANAITMVSFGIICYY 252
Query: 776 ILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
I + S + VG + + PLF G LF+L +IGV +PLENEM+ P++F GVLNVS
Sbjct: 253 IFREPISMEGKDAVGKIENFPLFFGTVLFALEAIGVILPLENEMKTPKKFGGSCGVLNVS 312
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
+ ++ GL YL YG V GSITLNLP+ + LA VK +L+ +I T L ++
Sbjct: 313 MVLIVFLYVGMGLFGYLNYGTSVLGSITLNLPEHEILAQCVKGMLAFAIYITHGLACYVA 372
Query: 896 YDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
DI WN Y+ R+ + EY RTL+V+ T
Sbjct: 373 IDITWNDYVADRLGPQRNKLFWEYAVRTLLVLAT 406
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307204534|gb|EFN83214.1| Proton-coupled amino acid transporter 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 215/325 (66%), Gaps = 7/325 (2%)
Query: 608 HMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSL 667
H++KG+LGTGIL MP AF ++GY++G + T IG F T C++ILV+++YELC+R+R+PS+
Sbjct: 3 HLLKGSLGTGILAMPRAFFNAGYVIGLIATFVIGLFCTYCMRILVQSEYELCKRRRVPSM 62
Query: 668 TYPEILGAALSEGPARFRWLAPYGRG---LSFTAMIVDEIGALCVYLLFIASNLSQVCVR 724
+YP AAL EGP WL P+ R + +++ ++G CVY++FIASNL + ++
Sbjct: 63 SYPATAEAALEEGPM---WLRPFSRASIHIINAFLMIYQMGTCCVYVVFIASNL-HLALK 118
Query: 725 FWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFS 784
W DL++YM ++ PL+L++++ NLK++ PFS+ A +MF AI +YYI + +F
Sbjct: 119 TWIDLDLKVYMAIILLPLILVNYIRNLKFLAPFSTLANILMFTGFAIILYYIFREPLTFE 178
Query: 785 DRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFA 844
R VG + + PLF G LF+L SIGV MPLENEM+ P+ F GVLN++ I ++A
Sbjct: 179 GRASVGAIENFPLFFGTVLFALESIGVIMPLENEMKTPKSFMRPFGVLNIAMIIIIVLYA 238
Query: 845 AFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYL 904
G Y++YG ++GSITL+LP ++ L +V++LL+++I FT + ++ DI WN Y+
Sbjct: 239 GMGFFGYVRYGSLIKGSITLSLPTQEKLGKAVQILLAIAIFFTHPIQCYVAIDIAWNEYI 298
Query: 905 KLRMNKSPSHTALEYGFRTLIVVIT 929
++K EY RT+++++T
Sbjct: 299 SPVIDKYRFKLLWEYVVRTIVILLT 323
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350402641|ref|XP_003486553.1| PREDICTED: proton-coupled amino acid transporter 4-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 204/331 (61%)
Query: 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 658
P W+ L H++KG+LGTGIL MP AF SG+ +G + T+ IG F T C++ILV +YEL
Sbjct: 77 PTTSWETLLHLLKGSLGTGILAMPKAFYHSGFGIGIVATIIIGLFCTYCMRILVTCEYEL 136
Query: 659 CRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 718
C+RKR+ SL+YP AAL EGPA FR A ++V ++G CVY +FIA+NL
Sbjct: 137 CKRKRVASLSYPATAEAALLEGPAPFRRFAKASTHTINAFLMVYQLGTCCVYTVFIATNL 196
Query: 719 SQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILG 778
+ D+RLYML + PL+L++W+ NLK++ P S+ A + FVS I +YYI
Sbjct: 197 QLALKTYVSDIDVRLYMLAILIPLILVNWIRNLKFLAPCSTVANFITFVSFGIILYYIFR 256
Query: 779 DFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAI 838
+ SF +R +G++ + PL+ G LF+L +IGV MPLENEM+ P+ F GVLN+ +
Sbjct: 257 EPLSFENREVIGNVENFPLYFGTVLFALEAIGVVMPLENEMKKPKTFIRTFGVLNIGMGV 316
Query: 839 NTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDI 898
++ G Y++YG ++GSIT NL + LA SV++LL+++I FT + ++ DI
Sbjct: 317 IVALYTGLGFFGYVRYGSGIRGSITFNLDEPLALAKSVQILLAIAIFFTHPIQCYVAIDI 376
Query: 899 VWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
+W YL + K+ EY RT +V+ T
Sbjct: 377 IWKDYLAPNLEKNSHKLLWEYVLRTSLVLFT 407
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170050820|ref|XP_001861483.1| amino acid transporter [Culex quinquefasciatus] gi|167872285|gb|EDS35668.1| amino acid transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 191/268 (71%), Gaps = 1/268 (0%)
Query: 197 FLVVCELGASCIYVIFVAGNLKAVADQY-YGDHDIRFYMLLIFFPILLLCWIRNLKLLAP 255
FL++ +LG C+YV+FV+ N+KA+AD Y D D+R YML+I P++L+ W+RNLK LAP
Sbjct: 159 FLLIYQLGTCCVYVVFVSSNIKAIADYYTENDTDVRIYMLIILLPLILINWVRNLKFLAP 218
Query: 256 FSTLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIGIIMPLE 315
FSTLA IT+ SFGI LYY+F + S R GN+ E PLFFGTV+F++ AIG+I+PLE
Sbjct: 219 FSTLANFITLVSFGIILYYIFREPISFEGREAVGNVAEFPLFFGTVLFALEAIGVILPLE 278
Query: 316 NEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSV 375
NEM++P KF GVLN AM+ I +Y G GFFGYL YG GS+TLNLP ++LAQ V
Sbjct: 279 NEMKTPKKFGGNFGVLNKAMILIVTLYIGMGFFGYLNYGLDAKGSITLNLPEDEILAQCV 338
Query: 376 KVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMI 435
K MLA AI+ T L Y+ +I WN Y+K H+ + AT++ Y+++T + ++TF A+ I
Sbjct: 339 KGMLAFAIYITHGLACYVAIDITWNDYMKKHIGDSPRATIYEYLVRTVLVLVTFLLAVAI 398
Query: 436 PNLELFISLIGSLCLPFMAIGLPALLRS 463
PNLELFISL G+LCL + I PAL+++
Sbjct: 399 PNLELFISLFGALCLSALGIAFPALIQT 426
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157115457|ref|XP_001658215.1| amino acid transporter [Aedes aegypti] gi|108876913|gb|EAT41138.1| AAEL007191-PA [Aedes aegypti] gi|247421543|gb|ACS96436.1| amino acid transporter PAT1 [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 144/334 (43%), Positives = 212/334 (63%), Gaps = 1/334 (0%)
Query: 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
+ P + L H++KG+LGTGIL MP+AF +G+L+G +GT+ IG T CI +L++A+Y
Sbjct: 58 EHPTTSNETLIHLLKGSLGTGILAMPNAFHHAGWLVGAVGTLLIGILCTYCIHLLIKAEY 117
Query: 657 ELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 716
ELCRRKR+PSL YP + AL EGP + L+ + ++V ++G CVY++F+AS
Sbjct: 118 ELCRRKRVPSLNYPAVTQTALLEGPDALKPLSNVIIHIINVFLLVYQLGTCCVYVVFVAS 177
Query: 717 NLSQVCVRFWGV-TDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY 775
N+ + + TD+RL+ML++ PL+LI+WV NLK++ PFS+ A + VS I +YY
Sbjct: 178 NIKAIADYYTETPTDVRLFMLIILLPLILINWVRNLKFLAPFSTLANFITLVSFGIILYY 237
Query: 776 ILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
I + +F + G +S+ PLF G LF+L +IGV +PLENEM+ P+QF GVLN +
Sbjct: 238 IFREPVTFEGKEAFGKISEFPLFFGTVLFALEAIGVILPLENEMKKPKQFGGNFGVLNKA 297
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
+ T++ G YL YG + +GSITLNLP+++ LA VK +L+ +I T L ++
Sbjct: 298 MVLIVTLYIGMGFFGYLNYGADSKGSITLNLPEQEILAQCVKGMLAFAIYITHGLACYVA 357
Query: 896 YDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
DI WN Y K R SP EY RT++V+IT
Sbjct: 358 IDITWNDYAKKRFGDSPRSVFYEYIVRTVLVLIT 391
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| FB|FBgn0036116 | 465 | CG7888 [Drosophila melanogaste | 0.356 | 0.711 | 0.397 | 1.2e-63 | |
| FB|FBgn0035300 | 451 | CG1139 [Drosophila melanogaste | 0.304 | 0.627 | 0.378 | 7.6e-56 | |
| FB|FBgn0032036 | 504 | CG13384 [Drosophila melanogast | 0.283 | 0.521 | 0.381 | 1.7e-52 | |
| FB|FBgn0036007 | 500 | path "pathetic" [Drosophila me | 0.342 | 0.636 | 0.350 | 5.2e-46 | |
| FB|FBgn0052079 | 457 | CG32079 [Drosophila melanogast | 0.286 | 0.582 | 0.363 | 1.8e-45 | |
| FB|FBgn0033760 | 474 | CG8785 [Drosophila melanogaste | 0.291 | 0.571 | 0.362 | 1.7e-43 | |
| FB|FBgn0052081 | 471 | CG32081 [Drosophila melanogast | 0.297 | 0.585 | 0.318 | 9.5e-41 | |
| FB|FBgn0030816 | 468 | CG16700 [Drosophila melanogast | 0.280 | 0.557 | 0.376 | 1.1e-40 | |
| FB|FBgn0033572 | 460 | CG12943 [Drosophila melanogast | 0.351 | 0.710 | 0.281 | 9e-38 | |
| WB|WBGene00020837 | 449 | T27A1.5 [Caenorhabditis elegan | 0.280 | 0.581 | 0.335 | 1.7e-35 |
| FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 132/332 (39%), Positives = 187/332 (56%)
Query: 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 658
P + L H++KG+LGTGIL MP+AF++SGY+ G +GT+ IG T CI LV+AQYEL
Sbjct: 52 PTTNSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYEL 111
Query: 659 CRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 718
CRRK++PS+ YP + A+ EGP FR APY + T +++ ++G CVY++F+ASN+
Sbjct: 112 CRRKKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNI 171
Query: 719 SQVCVRFWGVT-DXXXXXXXXXXXXXXISWVPNLKYIVPFSSSATGVMFVSLAITMYYIL 777
+ + D I+WV NLKY+ PFS+ A + VS I YYI
Sbjct: 172 KAIVDAVADTSIDVRLCMIIILLPLILINWVRNLKYLAPFSTLANAITMVSFGIICYYIF 231
Query: 778 GDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSA 837
+ + + G S+ PLF G LF+L +IGV +PLENEM+ P++F GVLNVS
Sbjct: 232 REPVTTEGKDAFGKPSNFPLFFGTVLFALEAIGVILPLENEMKTPQKFGGSCGVLNVSMV 291
Query: 838 INTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTXXXXXXXXXXXXXXFTFALPHFIVYD 897
+ ++ GL YL YG V GSITLN+P+ + T L ++ D
Sbjct: 292 LIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGLACYVAID 351
Query: 898 IVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
I WN Y+ R+ + EY RT +V+IT
Sbjct: 352 ITWNDYVAKRLGAQRNALFWEYAVRTGLVLIT 383
|
|
| FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 7.6e-56, Sum P(2) = 7.6e-56
Identities = 110/291 (37%), Positives = 169/291 (58%)
Query: 188 VSAIIVSF--GFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLC 245
++ I V F GFL G C+YV+F+A ++K + D+Y D+R +M +I P+LL+
Sbjct: 130 LAPIAVPFVDGFLAFYHFGICCVYVVFIAESIKQLVDEYLVVWDVRIHMCIIIVPLLLIY 189
Query: 246 WIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSM 305
I+NLKLLAPFS+ A + + FGI LYY+F ++P +SER+P +LP FFGTV+F++
Sbjct: 190 SIKNLKLLAPFSSAANLLLLVGFGIILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFAL 249
Query: 306 SAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNL 365
A+G+I+ +E M +P F G+LN M + +Y GFFGY KYG + GS+TLN+
Sbjct: 250 EAVGVILAIEENMATPKSFVGPCGILNSGMSIVLGLYVLLGFFGYWKYGNESEGSITLNI 309
Query: 366 PAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKXXXX 425
P ++ AQ VKV A+ + ++AL Y+ +I+W+ YL K + T + + +
Sbjct: 310 PQSEIPAQVVKVFFAITTWISYALQGYVTAHILWDKYLAKRF-KETRQTFYELIFRAIIV 368
Query: 426 XXXXXXXXXXPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGY 476
P+L +F+SL+GS CL + + P LL Q C+ GY
Sbjct: 369 LLTFGCAVAIPDLSVFLSLVGSFCLSILGLIFPVLL-----QICVQYTEGY 414
|
|
| FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 101/265 (38%), Positives = 155/265 (58%)
Query: 197 FLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPF 256
FL + ++G C+Y +FVA N+K V D YY ++ Y+L++ P++LL +RNLK L P
Sbjct: 194 FLFITQIGFCCVYFLFVALNIKDVMDHYY-KMPVQIYLLIMLGPMILLNLVRNLKYLTPV 252
Query: 257 STLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIGIIMPLEN 316
S +A +T+A IT Y+ D+P + P LPL+FGT +++ IG+++PLEN
Sbjct: 253 SLVAALLTVAGLAITFSYMLVDLPDVHTVKPVATWATLPLYFGTAIYAFEGIGVVLPLEN 312
Query: 317 EMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSVK 376
MR+P F GVLN M+ +A +YT GFFGYLKYG GS+TLNLP GD L+Q V+
Sbjct: 313 NMRTPEDFGGTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDTLSQLVR 372
Query: 377 VMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKXXXXXXXXXXXXXXP 436
+ +A+AIF ++ L Y+ NIV ++++H + + VL+ P
Sbjct: 373 ISMAVAIFLSYTLQFYVPVNIV-EPFVRSHFDTTRAKDLSATVLRVVLVTFTFLLATCIP 431
Query: 437 NLELFISLIGSLCLPFMAIGLPALL 461
NL ISL+G++ +A+ P ++
Sbjct: 432 NLGSIISLVGAVSSSALALIAPPII 456
|
|
| FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 5.2e-46, P = 5.2e-46
Identities = 114/325 (35%), Positives = 164/325 (50%)
Query: 604 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 663
+ L+H++K +LGTGIL MP AF SG ++G T+ T C +LV+ ++L R R
Sbjct: 91 ETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYRTR 150
Query: 664 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCV 723
+T+ EI AA +GP R AP + + + G VY + +ASN Q+ +
Sbjct: 151 RTKMTFAEIAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQL-I 209
Query: 724 RFWGVTDXXXXXXXXXXXX--XXISWVPNLKYIVPFSSSATGVMFVSLAITMYYILGDFP 781
+W T I+WVPNLKY+ P S A M + L IT YY++ D P
Sbjct: 210 SYWTGTAVSLRMLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLP 269
Query: 782 SFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTT 841
+R V S LP F +T+F++ +IGV MPLEN M+ P+ F GVL+ + T
Sbjct: 270 PVEERESVVW-STLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTL 328
Query: 842 IFAAFGLLAYLKYGDEVQGSITLNLPQEDTXXXXXXXXXXXXXXFTFALPHFIVYDIVWN 901
I+ G L YL+YG SITLNLP E+ TF L F+ +I+W+
Sbjct: 329 IYMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWD 388
Query: 902 RYLKLRMNKSPSHTALEYGFRTLIV 926
+K + K P T + Y RT++V
Sbjct: 389 G-IKEKCKKRP--TLVNYVLRTVLV 410
|
|
| FB|FBgn0052079 CG32079 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 1.8e-45, P = 1.8e-45
Identities = 99/272 (36%), Positives = 151/272 (55%)
Query: 195 FGFLV---VC--ELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRN 249
FG+LV +C G C+YV+F+A +LK + D Y D R YM LI P++L IRN
Sbjct: 136 FGYLVDILLCAYHFGVDCVYVVFIAKSLKHLGDMYLWVWDERLYMALIASPLILTFLIRN 195
Query: 250 LKLLAPFSTLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIG 309
LK L PFS ++ + + + + L Y+F D+P + L+ P+FFGTV+FS+ ++G
Sbjct: 196 LKSLVPFSIISNILLLTGYCVILNYLFRDLPEFEHLHAIQPLRNFPIFFGTVLFSIESVG 255
Query: 310 IIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGD 369
+I+ L MR P GVLN M+ + Y FGFFGY +YG +TS S+ N+P D
Sbjct: 256 VILSLGRSMRKPESLMGTCGVLNQGMIVVISFYAVFGFFGYWRYGENTSNSILQNMPQND 315
Query: 370 LLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKXXXXXXXX 429
+L + + ALAIF ++AL Y+ +I+W YL+ +E L T+ +L+
Sbjct: 316 ILPKLATGIFALAIFFSYALQGYVTVDIIWRNYLEPELEDRYLRTVEC-LLRIALVIASV 374
Query: 430 XXXXXXPNLELFISLIGSLCLPFMAIGLPALL 461
P+ L +SL+GS CL + + LP ++
Sbjct: 375 LVAIQYPDFGLLLSLVGSFCLAQLGLILPGIV 406
|
|
| FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 101/279 (36%), Positives = 156/279 (55%)
Query: 193 VSFGFLVVCELGASCIYVIFVAGNLKAVADQYYG-DHDIRFYMLLIFFPILLLCWIRNLK 251
V G L+ A+C+Y++F+A + V + + D+R Y+ L P LL+ IR+LK
Sbjct: 158 VDIG-LMATYYAAACVYIVFIATSFHDVINYDLKINWDVRIYIALTVIPCLLIGQIRDLK 216
Query: 252 LLAPFSTLATAITIASFGITLYYVFTDVPSISERNPG-GNLKELPLFFGTVMFSMSAIGI 310
L PFS +A + +F ITLYY+F D P + P +PLFF TV+F+M IG+
Sbjct: 217 WLVPFSMMANIFIVVTFAITLYYMF-DEPLVYSDKPLIAKAAHIPLFFATVIFAMEGIGV 275
Query: 311 IMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDL 370
+MP+EN MR P F GVLN+AM+++ +Y GFFGY+++G GS+TLNLP G
Sbjct: 276 VMPVENSMRKPQHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPEGAW 335
Query: 371 LAQSVKVMLALAIFCTFALPQYIVYNIVWNCYL-KTHMEKNSLATMWIYVLKXXXXXXXX 429
L + K+++A+AI TF L Y+ I+W K EK+++ + +L+
Sbjct: 336 LGDTAKLLMAVAILFTFGLQFYVPNEILWRKISHKFSPEKHNITQI---LLRSGIILLSG 392
Query: 430 XXXXXXPNLELFISLIGSLCLPFMAIGLPALLRSTAVQP 468
PNLE FISL+G++ + I +P+ + + + P
Sbjct: 393 GVAAAIPNLEPFISLVGAVFFSLLGIFVPSFVETVYLWP 431
|
|
| FB|FBgn0052081 CG32081 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 9.5e-41, Sum P(2) = 9.5e-41
Identities = 90/283 (31%), Positives = 157/283 (55%)
Query: 196 GFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAP 255
G L + G +Y +FVA LK + D Y+ D+R Y+ +I ++ IR LK L P
Sbjct: 116 GVLAFSQFGVCVVYNVFVAATLKQLVDFYWVVADLRIYIAVIALCLIPPFQIRKLKYLVP 175
Query: 256 FSTLATAITIASFGITLYYVFTDVPSISERNP-GGNLKELPLFFGTVMFSMSAIGIIMPL 314
F+ LA+ + F + +YY+F D+P I+ERN G + ++PLFFG +FS++++G+++ +
Sbjct: 176 FNILASILIYTGFSLMMYYLFVDLPPITERNILFGRIDKIPLFFGIALFSITSVGVMLAV 235
Query: 315 ENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQS 374
E M P + G+L+ A+L + + Y FG GY +YG T+GS++LN+P ++L+Q
Sbjct: 236 EATMAKPRHYLGWFGILDRAILLVIISYVTFGLMGYWRYGDETAGSISLNIPTDEVLSQV 295
Query: 375 VKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKXXXXXXXXXXXXX 434
K +A AIF T+ L +++ +I+ N + + + + A + +L+
Sbjct: 296 AKGFIAAAIFLTYPLAGFVIIDIIMNHFWNKNGDLPN-AALKESILRACTVVLICITAII 354
Query: 435 XPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYS 477
PNL +SL+G+L + + + PAL ++ CL P Y+
Sbjct: 355 APNLGPLLSLVGALTISLLNLVFPAL-----IEICLYYPPEYN 392
|
|
| FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 101/268 (37%), Positives = 145/268 (54%)
Query: 197 FLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPF 256
F+ V +LG CIY +F++ NLK + Y D ++ MLL F P+LL I NLK L P
Sbjct: 153 FICVTQLGFCCIYFVFISTNLKQILQAYDIDMNVHLVMLLAFVPVLLSSLITNLKWLTPV 212
Query: 257 STLATAITIASFGITLYYVFTD-VPSISERNPGGNLKELPLFFGTVMFSMSAIGIIMPLE 315
S A I ITLYY D +P + ER N +L LFFGT +F+ I ++MPL+
Sbjct: 213 SMFANVCMILGLAITLYYALKDGLPEVEERALWTNGSQLALFFGTAIFAFEGIALVMPLK 272
Query: 316 NEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGD-LLAQS 374
N MR P +F LGVLNV M +++++ G GY+K+G GS+TLNL GD +LAQ+
Sbjct: 273 NAMRKPHQFERPLGVLNVGMFLVSVMFMFAGSVGYMKWGEQVGGSLTLNL--GDTILAQA 330
Query: 375 VKVMLALAIFCTFALPQYIVYNIVW-NCYLKTHMEKNSLATMWIYVLKXXXXXXXXXXXX 433
VK+M++ + + L ++ I+W N +E SL + +
Sbjct: 331 VKLMVSAGVLLGYPLQFFVAIQIMWPNAKQMCGIEGRSL--LGELGFRTFMVLVTLAIAE 388
Query: 434 XXPNLELFISLIGSLCLPFMAIGLPALL 461
P L LFISLIG+LC +A+ P ++
Sbjct: 389 MVPALGLFISLIGALCSTALALVFPPVI 416
|
|
| FB|FBgn0033572 CG12943 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.0e-38, P = 9.0e-38
Identities = 94/334 (28%), Positives = 164/334 (49%)
Query: 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 658
PL DA ++K +GTGIL MP AF+ SG+++G + ++ + T I +L+ E
Sbjct: 45 PLTNCDAFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIADMTEC 104
Query: 659 CRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGA--LC-VYLLFIA 715
CRR+R+P ++ PE + A EGP +W+ +GR F V G LC VYL+F++
Sbjct: 105 CRRRRVPQVSMPEAVRIAYEEGP---KWINCFGRAAGFMTTCVLVFGQFLLCTVYLVFVS 161
Query: 716 SNLSQVCVRFWGVTDXXXXXXXXXXXXXXISWVPNLKYIVPFSSSATGVMFVSLAITMYY 775
N ++ + + + + LKY+VP + + +++ A+ MYY
Sbjct: 162 KNFKEIGDHYIERYNERYYVLVACLLLLPLFMIRRLKYLVPLNLISNFLLYAGFALIMYY 221
Query: 776 ILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
+ P+ +DR V + F+ + FSL+++G + +E M HP+ + GVLN++
Sbjct: 222 LFNGLPNINDREMVTPPVEWIEFIAIAAFSLTAVGSMLVVEAHMAHPQSYLGLFGVLNLA 281
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTXXXXXXXXXXXXXXFTFALPHFIV 895
FG++ Y ++GD V SITLN+PQ++ ++ L F+V
Sbjct: 282 VLFILLSNMFFGIIGYWRFGDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVV 341
Query: 896 YDIVWNRYLKLRMNKSPSHTALEYGFRTLIVVIT 929
++++ Y + T +EY R L + +T
Sbjct: 342 ITVMFSDYENSEP-RGRYRTLIEYVVRLLFLFLT 374
|
|
| WB|WBGene00020837 T27A1.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 89/265 (33%), Positives = 140/265 (52%)
Query: 198 LVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRF-YMLLIFFPILLLCWIRNLKLLAPF 256
+ V + G C+Y +F+A NLK DQ H + ++ L+ PI LC IR LK LAP
Sbjct: 138 MFVAQFGFCCVYFVFMADNLKQFFDQTSSIHISQAGWIALLLIPISALCTIRELKALAPL 197
Query: 257 STLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIGIIMPLEN 316
+ +A + I + I L +F+D + G ++ LPLFFGTVMF+ + +++P+EN
Sbjct: 198 AAVANFVYIIAVVIVLADLFSDWQPLDSLPAFGAVENLPLFFGTVMFAFEGVAVVLPIEN 257
Query: 317 EMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSVK 376
+M P F + GVLN + + + L+Y GFFG+L+YG ++TLNLP Q++K
Sbjct: 258 QMNEPIHFITPNGVLNTSCILVLLVYMTVGFFGFLRYGNDIKDTLTLNLPQTPFY-QAIK 316
Query: 377 VMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKXXXXXXXXXXXXXXP 436
VM L I ++ L Y+ V ++K + + M IY ++ P
Sbjct: 317 VMFVLCILVSYPLQFYVPMERVEK-WIKRKVVEAKQEPM-IYAIRFGGVLLTCAMAQLIP 374
Query: 437 NLELFISLIGSLCLPFMAIGLPALL 461
+L LFISL+GS+ + + P L+
Sbjct: 375 HLALFISLVGSVAGTSLTLVFPPLI 399
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 929 | |||
| pfam01490 | 406 | pfam01490, Aa_trans, Transmembrane amino acid tran | 8e-38 | |
| pfam01490 | 406 | pfam01490, Aa_trans, Transmembrane amino acid tran | 1e-37 | |
| pfam01490 | 406 | pfam01490, Aa_trans, Transmembrane amino acid tran | 1e-11 | |
| COG0814 | 415 | COG0814, SdaC, Amino acid permeases [Amino acid tr | 1e-11 | |
| COG0814 | 415 | COG0814, SdaC, Amino acid permeases [Amino acid tr | 3e-07 | |
| PTZ00206 | 467 | PTZ00206, PTZ00206, amino acid transporter; Provis | 0.002 |
| >gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-38
Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 10/280 (3%)
Query: 191 IIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIR--FYMLLIFFPILLLCWIR 248
+++ F LV G Y+IF NL A+ D ++ I +++++ + L +I
Sbjct: 86 LLILFAILVNL-FGVCISYLIFAGDNLPAIFDSFFDTCHISLVYFIIIFGLIFIPLSFIP 144
Query: 249 NLKLLAPFSTLAT----AITIASFGITLYYVFTDVP-SISERNPGGNLKELPLFFGTVMF 303
NL L+ S +A I I + V T L L L G ++F
Sbjct: 145 NLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVF 204
Query: 304 SMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTL 363
+ +++P++N M+SPSKF + VL A++ + ++Y G GYL +G + G++ L
Sbjct: 205 AFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILL 264
Query: 364 NLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHM--EKNSLATMWIYVLK 421
NLP D L ++L L + ++ L + + IV N + + N + + V++
Sbjct: 265 NLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIR 324
Query: 422 TTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALL 461
+ + +IT+ AI +P L F+SL+G+ + LP L
Sbjct: 325 SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLF 364
|
This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406 |
| >gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-37
Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 21/337 (6%)
Query: 603 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 662
W A+ ++IK +G G+L++P+AFK G++ G + V +G + + +LV+ + + K
Sbjct: 6 WQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVK 65
Query: 663 RIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVC 722
+Y ++ +R P G+ L A++V+ G YL+F NL +
Sbjct: 66 GKRRKSYGDLG----------YRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIF 115
Query: 723 VRFWGVTDLRL--YMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMY---YIL 777
F+ + L ++++ + +S++PNL + S A + + + +
Sbjct: 116 DSFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGV 175
Query: 778 GDFPSFSDRTPVG--HLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
L+ L L +G+ +F+ V +P++N M+ P +F A VL +
Sbjct: 176 LTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTA 235
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
I T ++ GL+ YL +G+ V+G+I LNLP+ D L LLL + +L ++ L F +
Sbjct: 236 IIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPI 295
Query: 896 YDIVWN---RYLKLRMNKSPSHTALEYGFRTLIVVIT 929
IV N R + P L R+ +VVIT
Sbjct: 296 RQIVENLLFRKGASGKHN-PKSKLLRVVIRSGLVVIT 331
|
This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406 |
| >gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 479 TLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMVVAQYVLCKKKKI 538
+F+++KA +G G+L++P+AFK G++ G+I +++GL S Y +H++V + K K
Sbjct: 8 AVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGK 67
Query: 539 PSLTYPEIAETALSEGPPSVRWLAPYGR-IVSFGFLVVCELGASCIYVIFVAGNLKAVSK 597
+Y ++ P G+ ++ F LV G Y+IF NL A+
Sbjct: 68 RRKSYGDLGYRLFG----------PKGKLLILFAILVNL-FGVCISYLIFAGDNLPAIFD 116
Query: 598 KPLVYWD-ALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
+L + I + G++ +P +F + L L VA + I +L A+
Sbjct: 117 SFFDTCHISLVYFI---IIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAEL 173
|
This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406 |
| >gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 52/287 (18%), Positives = 98/287 (34%), Gaps = 22/287 (7%)
Query: 609 MIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT 668
+ A+G G+L +P AF G+ G L + T + +L+ A +
Sbjct: 18 LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEA----LLSSPNGKAS 73
Query: 669 YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGV 728
++ L G L + G L Y++ I + L+ +G+
Sbjct: 74 ITSLVEDYLG----------KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL 123
Query: 729 TDL--RLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY----ILGDFPS 782
L +L L+ L +SW+ ++ +S + L + + Y
Sbjct: 124 NPLPRKLGSLIFALVLAFLSWL-GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLF 182
Query: 783 FSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTI 842
L L + V +FS G L N M+ + R + + S I +
Sbjct: 183 ALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVL 241
Query: 843 FAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFA 889
+ G + +G V G+I Q +L ++ +++ IL
Sbjct: 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIAL 288
|
Length = 415 |
| >gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 56/286 (19%), Positives = 101/286 (35%), Gaps = 17/286 (5%)
Query: 190 AIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDI--RFYMLLIFFPILLLCWI 247
I++ + G Y++ + L + +G + + + L+ + L W+
Sbjct: 87 GILIGLSYFFAL-YGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWL 145
Query: 248 RNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISERNP---GGNLKELPLFFGTVMFS 304
L +L S L I + +Y + P+ P K L L +FS
Sbjct: 146 GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFS 205
Query: 305 MSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLN 364
G I L N MR SK + + + L ++Y GFF + +G G++
Sbjct: 206 FGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA 264
Query: 365 LPAGD-------LLAQSVKVMLALAIFCTFAL-PQYIVYNIVWNCYLKTHMEKNSLATMW 416
+ S + +AL IF FA+ ++ + L +K++
Sbjct: 265 KEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGR 324
Query: 417 IYVLKTTICIITFAFAIMIPN-LELFISLIGSLCLPFMAIGLPALL 461
T + FA++ P + + G L A +PALL
Sbjct: 325 KKTGLLTF-LPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALL 369
|
Length = 415 |
| >gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 278 DVPSISERNPGGNLKE-LPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAML 336
D I N G E L +F +F ++A + M + N RS KF +AM
Sbjct: 245 DNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTN--RSVGKFVL---ASTIAMG 299
Query: 337 SIALIYTGFGFFGYLKYGPSTSGSVTL-----NLPAGDLLAQSVKVMLA-----LAIFCT 386
+Y FFGY+ +G + +GSV L N PA + V V L L + C
Sbjct: 300 MCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACR 359
Query: 387 FALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIG 446
AL Y+++ K K+ +A + T+ ++ + IP + + G
Sbjct: 360 NAL-----YDVIGWDARKVAFWKHCIAVV-------TLSVVMLLCGLFIPKINTVLGFAG 407
Query: 447 SLCLPFMAIGLPALL 461
S+ + LPALL
Sbjct: 408 SISGGLLGFILPALL 422
|
Length = 467 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| KOG1304|consensus | 449 | 100.0 | ||
| PTZ00206 | 467 | amino acid transporter; Provisional | 100.0 | |
| KOG1304|consensus | 449 | 100.0 | ||
| PLN03074 | 473 | auxin influx permease; Provisional | 100.0 | |
| KOG1303|consensus | 437 | 100.0 | ||
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 100.0 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 100.0 | |
| KOG1305|consensus | 411 | 100.0 | ||
| KOG1303|consensus | 437 | 100.0 | ||
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 100.0 | |
| KOG4303|consensus | 524 | 100.0 | ||
| PLN03074 | 473 | auxin influx permease; Provisional | 100.0 | |
| KOG1305|consensus | 411 | 99.97 | ||
| KOG4303|consensus | 524 | 99.97 | ||
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.93 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.93 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.7 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.67 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.66 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.66 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.64 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.62 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.62 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.61 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.59 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.55 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.41 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.4 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.38 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.32 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.03 | |
| KOG3832|consensus | 319 | 98.75 | ||
| PRK10655 | 438 | potE putrescine transporter; Provisional | 98.74 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 98.72 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 98.71 | |
| PRK11021 | 410 | putative transporter; Provisional | 98.71 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 98.69 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 98.66 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 98.65 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 98.59 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 98.57 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 98.55 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 98.53 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 98.51 | |
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 98.5 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 98.46 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 98.45 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 98.43 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 98.35 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 98.33 | |
| PRK10836 | 489 | lysine transporter; Provisional | 98.31 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 98.3 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 98.3 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 98.29 | |
| KOG3832|consensus | 319 | 98.27 | ||
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 98.27 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 98.25 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 98.25 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 98.23 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 98.2 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 98.2 | |
| PRK11021 | 410 | putative transporter; Provisional | 98.18 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 98.14 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 98.12 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 98.11 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 98.08 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 98.06 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 98.02 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 98.02 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 98.02 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 98.01 | |
| KOG1287|consensus | 479 | 97.96 | ||
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 97.95 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 97.89 | |
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 97.89 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 97.89 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 97.86 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 97.8 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 97.78 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 97.74 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 97.73 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 97.73 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 97.68 | |
| KOG1286|consensus | 554 | 97.66 | ||
| PRK10836 | 489 | lysine transporter; Provisional | 97.66 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 97.66 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 97.65 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 97.63 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 97.63 | |
| KOG1287|consensus | 479 | 97.62 | ||
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 97.53 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 97.4 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 97.37 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 97.36 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 97.31 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 97.06 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 97.04 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 97.03 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 96.96 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 96.9 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 96.89 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 96.87 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 96.83 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 96.81 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 96.79 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 96.73 | |
| KOG1286|consensus | 554 | 96.71 | ||
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 96.6 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 96.57 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 96.49 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 96.37 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 96.36 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 96.33 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 96.29 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 96.25 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 96.13 | |
| PRK11375 | 484 | allantoin permease; Provisional | 95.85 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 95.84 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 95.57 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 95.54 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 95.51 | |
| PF02554 | 376 | CstA: Carbon starvation protein CstA; InterPro: IP | 95.46 | |
| PRK11375 | 484 | allantoin permease; Provisional | 95.35 | |
| PRK12488 | 549 | acetate permease; Provisional | 95.34 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 95.25 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 95.25 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 95.25 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 94.84 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 94.36 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 94.3 | |
| PRK12488 | 549 | acetate permease; Provisional | 94.29 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 94.11 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 93.89 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 93.77 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 93.72 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 93.46 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 93.44 | |
| KOG1289|consensus | 550 | 93.25 | ||
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 92.94 | |
| KOG1289|consensus | 550 | 92.27 | ||
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 92.27 | |
| COG1966 | 575 | CstA Carbon starvation protein, predicted membrane | 90.53 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 90.53 | |
| PRK15015 | 701 | carbon starvation protein A; Provisional | 90.2 | |
| PRK10484 | 523 | putative transporter; Provisional | 90.18 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 88.88 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 88.58 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 86.9 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 84.69 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 81.07 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 80.74 |
| >KOG1304|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-56 Score=483.47 Aligned_cols=390 Identities=33% Similarity=0.627 Sum_probs=346.6
Q ss_pred chhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccc--cCChHHHHHhhhhccccCCCcchh
Q psy4524 87 KDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFM--SIGFPAIVDLLTFWDHHQGAGKVF 164 (929)
Q Consensus 87 ~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~--~~sy~~~~~~~~~~~~~~g~~~~~ 164 (929)
-...+|+|+|++|+||+++||+.|.+..++++.+++||++.|++|+++.+++.. ..+|+|+++.. ...|++|.
T Consensus 57 ~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a----~~~~~~~~- 131 (449)
T KOG1304|consen 57 LKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA----MEGGPGWL- 131 (449)
T ss_pred HHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH----HcCCcHHH-
Confidence 334679999999999999999999999999999999999999999888875432 34789998886 44555544
Q ss_pred hhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhc-CCCChhHHHHHHHHHHHH
Q psy4524 165 FVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYY-GDHDIRFYMLLIFFPILL 243 (929)
Q Consensus 165 ~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~~~~~~~~i~~~~~~p 243 (929)
|.. +++++.+++. +++++|+|.|++|+++++++++++.+... ...+.+.++.+..++++|
T Consensus 132 ---r~~---------------g~~~r~~V~~-~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~ll 192 (449)
T KOG1304|consen 132 ---RKY---------------GPAARFVVNF-FLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLL 192 (449)
T ss_pred ---Hhh---------------cHHHHHHHHH-HHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 433 6777888875 99999999999999999999999998433 467899999999999999
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCCCCCCCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCCCC
Q psy4524 244 LCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSK 323 (929)
Q Consensus 244 L~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~ 323 (929)
++++|++|.|+.+|.++.++++.++++++++..++.++.++.+...++.+++.++|+.+|||+|+.++.|++++||+|++
T Consensus 193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~ 272 (449)
T KOG1304|consen 193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK 272 (449)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence 99999999999999999999999999999999999887777777778999999999999999999999999999999999
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhh
Q psy4524 324 FTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYL 403 (929)
Q Consensus 324 ~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~ 403 (929)
|+...++++.+|.+++++|..+|++||+.||+++++.++.|+|+ +++.+.+|+++++++.+||||++||+.+++|+.+.
T Consensus 273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~ 351 (449)
T KOG1304|consen 273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIR 351 (449)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHH
Confidence 99777799999999999999999999999999999999999998 89999999999999999999999999999999874
Q ss_pred hhccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhhhhhhhhhhcccchhhccccccccccCCCccchhhhh
Q psy4524 404 KTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYSETLFHM 483 (929)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~ 483 (929)
+|.. +++ +++....+|..+++++..+|.++||++.+++|+||++++.+++++|+++++..+ |++..+..+|++
T Consensus 352 ~k~~-~~~-~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~-----~~~~~~~~~~~~ 424 (449)
T KOG1304|consen 352 KKFS-ENR-KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITF-----YPEGKGRFMWKL 424 (449)
T ss_pred HhcC-cch-hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHh-----cccccCceehHH
Confidence 4433 322 667788999999999999999999999999999999999999999999997754 455445667777
Q ss_pred hhhhcccccccchhHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Q psy4524 484 LKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMV 526 (929)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~g~y~si~~i 526 (929)
+ +|+.++ ++|++..+.|||.++.+|
T Consensus 425 ~---------------~ni~l~---~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 425 I---------------KNIVLI---VFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred H---------------HHHHHH---HHHHHHHHHHHhhhhhcC
Confidence 7 887776 899999999999998653
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=482.30 Aligned_cols=389 Identities=18% Similarity=0.175 Sum_probs=311.7
Q ss_pred cccchhhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcc
Q psy4524 55 KFLAPFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGA 134 (929)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~ 134 (929)
++|||||+.+++||++...+ |+|||+||+||+++||++|++++++++.++.||.++|.+++++
T Consensus 55 ~~~~~gg~~~s~fnL~~~~i-----------------GaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~ 117 (467)
T PTZ00206 55 TIIPPGGIAASAFNIASSTV-----------------GAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK 117 (467)
T ss_pred hccCCCcHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999998 9999999999999999999999999999999999999999776
Q ss_pred cccccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHH
Q psy4524 135 LCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVA 214 (929)
Q Consensus 135 ~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~ 214 (929)
.+ . .||+|+++.. . +++++++++ +++.+.++|+|++|+++++
T Consensus 118 ~~--~--~sY~~la~~~------~---------------------------G~~g~~~v~-~~~~~~~~G~cv~YlIiig 159 (467)
T PTZ00206 118 TN--I--RTYEGVARVL------L---------------------------GPWGSYYVA-ATRAFHGFSACVAYVISVG 159 (467)
T ss_pred CC--C--CCHHHHHHHH------h---------------------------CHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43 2 3899998876 1 233355665 4889999999999999999
Q ss_pred hhHHHHHHhhcC------CCChh-HHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeec-cCCC-CCC
Q psy4524 215 GNLKAVADQYYG------DHDIR-FYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTD-VPSI-SER 285 (929)
Q Consensus 215 ~~l~~l~~~~~~------~~~~~-~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~-~~~~-~~~ 285 (929)
|+++++++.... ..+.| ++..+++++++|++++|++++|+|+|.+|++++++.++++++++..+ .|+. ++.
T Consensus 160 d~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~ 239 (467)
T PTZ00206 160 DILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNV 239 (467)
T ss_pred HHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccc
Confidence 999998864211 11223 34456778899999999999999999999999888887776665433 2221 110
Q ss_pred ----CC-----CC-CCCcchhhhhHHHhhhccccchhhhhhhccCCC--CCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 286 ----NP-----GG-NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS--KFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 286 ----~~-----~~-~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~--~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
.. .+ ...+++.++|+++|||.||.+++|+++|||||+ |+.+ ++..++.+|+++|.++|++||+.|
T Consensus 240 ~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~f 316 (467)
T PTZ00206 240 SVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDF 316 (467)
T ss_pred ccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 00 11 123577889999999999999999999999975 4444 789999999999999999999999
Q ss_pred CCCcccccccccC-CCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHH
Q psy4524 354 GPSTSGSVTLNLP-AGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFA 432 (929)
Q Consensus 354 G~~v~~~iL~~~~-~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA 432 (929)
|++++++++.|++ .+|....++++++.++++++||++++|+|+.+++.+..+ .++.+.|++...+..++++++++|
T Consensus 317 G~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~iA 393 (467)
T PTZ00206 317 GRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD---ARKVAFWKHCIAVVTLSVVMLLCG 393 (467)
T ss_pred ccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC---cccCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999995 567888899999999999999999999999998876222 122234556566666777889999
Q ss_pred HHccchhHHHHHHhhhhhhhhhhcccchhhccccccccccCCCccchhhhhhhhhcccccccchhHHHhhhhHHHHHHHH
Q psy4524 433 IMIPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYSETLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTI 512 (929)
Q Consensus 433 ~~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 512 (929)
+++|+++.+++++||++++.++|++|++||+|... .+|++ ..+|+.+ .++.++ +.|+
T Consensus 394 i~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~--~~~~~---~~~~~~~---------------~~~~ll---i~Gv 450 (467)
T PTZ00206 394 LFIPKINTVLGFAGSISGGLLGFILPALLFMYSGG--FTWQK---VGPFYYI---------------STYVVL---ITGV 450 (467)
T ss_pred hccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCC--ccHHh---hchHHHH---------------HHHHHH---HHHh
Confidence 99999999999999999999999999999987321 11221 1222223 666666 8888
Q ss_pred HHhhhhhHHHHHHHH
Q psy4524 513 VIGLFSCYCIHMMVV 527 (929)
Q Consensus 513 ~~~v~g~y~si~~i~ 527 (929)
+.++.|||+++.++.
T Consensus 451 ~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 451 IAIVFGTGATIWGVT 465 (467)
T ss_pred heEEecchhHhhHHh
Confidence 999999999987764
|
|
| >KOG1304|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=444.92 Aligned_cols=338 Identities=39% Similarity=0.721 Sum_probs=321.1
Q ss_pred cCCcccccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy4524 589 AGNLKAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT 668 (929)
Q Consensus 589 ~~~~~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~s 668 (929)
++.+.++.++..|..++..|+.|.++|+|+|++|+||+++||+.|.+...+.+.++.||++.+++|++++.++.+.+..+
T Consensus 36 ~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~ 115 (449)
T KOG1304|consen 36 SPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLD 115 (449)
T ss_pred CccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCcccc
Confidence 44455556678999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhc
Q psy4524 669 YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISW 747 (929)
Q Consensus 669 y~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~ 747 (929)
|++.++.+++.++.|.|.+|+++|.+++.+++++++|.|++|+++++++++++.+...+ ..+.+.++++..++.+++++
T Consensus 116 y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 116 YAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999995443 88999999999999999999
Q ss_pred ccCchhhhhHHHHHHHHHHHHHhhhhheeccCCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCccccc
Q psy4524 748 VPNLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTA 827 (929)
Q Consensus 748 ~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~ 827 (929)
+|+++.|+.+|+++++.+++++.+++++...+.++.++.+.+.++.+++.++|+.+|||+|+.++.|++++||+|++|+.
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g 275 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPG 275 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCC
Confidence 99999999999999999999999999999999998889999888999999999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhhc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLR 907 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~~ 907 (929)
..+++..++.+++++|..+|++||++|||++++.|++|+|+ +++.+.+|+++++.+++|||||+||+.|++|+. ++++
T Consensus 276 ~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-i~~k 353 (449)
T KOG1304|consen 276 PFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-IRKK 353 (449)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-HHHh
Confidence 77799999999999999999999999999999999999999 799999999999999999999999999999999 8888
Q ss_pred cCCCCchhHHHHhhheeeEEEC
Q psy4524 908 MNKSPSHTALEYGFRTLIVVIT 929 (929)
Q Consensus 908 ~~~~~~~~~~~~~~r~~~v~~t 929 (929)
.++ ++++|..+.+|..+|++|
T Consensus 354 ~~~-~~~~~~~~~~R~~lVllt 374 (449)
T KOG1304|consen 354 FSE-NRKKLLEYALRVFLVLLT 374 (449)
T ss_pred cCc-chhHHHHHHHHHHHHHHH
Confidence 885 558999999999988764
|
|
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=420.68 Aligned_cols=416 Identities=14% Similarity=0.053 Sum_probs=310.9
Q ss_pred cchh-hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhccc
Q psy4524 57 LAPF-SAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGAL 135 (929)
Q Consensus 57 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~ 135 (929)
++++ +...+.+++++..+ |+|||+||+||+++||++|++++++++++++||.++|.++..+.
T Consensus 42 ~~~~~s~~~~~~~l~~~~v-----------------G~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~ 104 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQV-----------------AQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEY 104 (473)
T ss_pred ccCCchHHHHHHHHHHHHH-----------------hHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 47778899999998 99999999999999999999999999999999999999885443
Q ss_pred ccccc--cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHH
Q psy4524 136 CLPFM--SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFV 213 (929)
Q Consensus 136 ~~~~~--~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~ 213 (929)
+.+.. ..+|+|..+ .+.|++...+| ++++.+.. ++...++++.|+.|++..
T Consensus 105 ~~r~~~~~~~~~~~~~------------------------~~~e~~~~~~G--~~~~~~~~-~~~~v~l~~~~v~~li~~ 157 (473)
T PLN03074 105 RARKEREKVDFKNHVI------------------------QWFEVLDGLLG--PYWKNVGL-AFNCTFLLFGSVIQLIAC 157 (473)
T ss_pred HhccCcCCCchhHHHH------------------------HHHHHHHHhcC--hhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 32211 112222110 22334433442 23334443 367788899999999988
Q ss_pred HhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeec--cCCCCCCCCCCCC
Q psy4524 214 AGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTD--VPSISERNPGGNL 291 (929)
Q Consensus 214 ~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~--~~~~~~~~~~~~~ 291 (929)
++++..+- ...+.+.|++++.++++|++++|++++++|+|++|+.+++++.+.+++....+ .|+.++ ..+.+.
T Consensus 158 ~~~~~~l~----~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-~~~~~~ 232 (473)
T PLN03074 158 ASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-SGPTKL 232 (473)
T ss_pred hhhhhhhC----CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCchhH
Confidence 88766552 25678889999999999999999999999999999997654433333222222 121111 112344
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcc--cccccccCCCC
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTS--GSVTLNLPAGD 369 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~--~~iL~~~~~~~ 369 (929)
..++.++++++|||++|.++||+++|||||+||++ +...++..++.+|+.+|+.||+.|||+++ ++.+.|+|++.
T Consensus 233 ~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~ 309 (473)
T PLN03074 233 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG 309 (473)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch
Confidence 45667778899999999999999999999999998 56889999999999999999999999975 56787888654
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhhhh
Q psy4524 370 LLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGSLC 449 (929)
Q Consensus 370 ~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa~~ 449 (929)
+.+++++.+.++++.+||++++|..+..|+.+ +.+. .+..+.+..+|+.++++++++|+.+|+|+++++|+||++
T Consensus 310 -~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~-~~~~---~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~ 384 (473)
T PLN03074 310 -WRDAAVILMLIHQFITFGFACTPLYFVWEKAI-GVHD---TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALL 384 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cccc---cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56899999999999999999999988766654 3331 223456788999999999999999999999999999999
Q ss_pred hhhhhhcccchhhccccccccccCC------C-ccchhhhhhhhhcccccccchhHHHhhhhHHHHHHHHHHhhhhhHHH
Q psy4524 450 LPFMAIGLPALLRSTAVQPCLDIPL------G-YSETLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCI 522 (929)
Q Consensus 450 ~~~l~fi~P~l~~l~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~g~y~s 522 (929)
++++++++|+++|++.++...++++ + .++.+|..+ +|++++ ++++++.++.|+|+|
T Consensus 385 ~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~n~~ii--v~~~~~g~~~G~~as 447 (473)
T PLN03074 385 VSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYV---------------VNAFVV--VWVLVVGFGFGGWAS 447 (473)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehh---------------hhhHHH--HhhhhHhhccchHHH
Confidence 9999999999999985543322221 1 111122233 777665 124555568999999
Q ss_pred HHHHHHHhhh-hhccCCCCCChHHHHHHHhhcCCCcc
Q psy4524 523 HMMVVAQYVL-CKKKKIPSLTYPEIAETALSEGPPSV 558 (929)
Q Consensus 523 i~~i~~~~~~-~~~~~~p~~~~~e~~~~a~~~~~~~~ 558 (929)
+++|+++|+. + .-.+.++|.|+++
T Consensus 448 i~~ii~~~~~~~------------~f~~~~~c~~~~~ 472 (473)
T PLN03074 448 MTNFVRQIDTFG------------LFAKCYQCPPPSP 472 (473)
T ss_pred HHHHHHhhhhhh------------hhhhhccCCCCCC
Confidence 9999998854 2 3467788977653
|
|
| >KOG1303|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=383.93 Aligned_cols=354 Identities=15% Similarity=0.215 Sum_probs=283.8
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhccccc--ccccCChHHHHHhhhhccccCCCcchhhh
Q psy4524 89 RTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCL--PFMSIGFPAIVDLLTFWDHHQGAGKVFFV 166 (929)
Q Consensus 89 ~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~--~~~~~sy~~~~~~~~~~~~~~g~~~~~~~ 166 (929)
..+|+|+|+||+|++++||++|+++++..++++.||.++|.+|.++... ++.+++|+|+++..
T Consensus 50 ~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a--------------- 114 (437)
T KOG1303|consen 50 ALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA--------------- 114 (437)
T ss_pred hhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH---------------
Confidence 3449999999999999999999999999999999999999999665542 11223566666554
Q ss_pred hhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCC---CChhHHHHHHHHHHHH
Q psy4524 167 LKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGD---HDIRFYMLLIFFPILL 243 (929)
Q Consensus 167 ~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~---~~~~~~~~i~~~~~~p 243 (929)
+|+.+ ++++. ..+...++|+|+.|++..+|+++.+.+....+ .+.+.|+++..++.+|
T Consensus 115 ----------------fG~~~--~~iv~-~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~ 175 (437)
T KOG1303|consen 115 ----------------FGPKG--RLLVS-VLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLP 175 (437)
T ss_pred ----------------hCCCc--eEeee-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHH
Confidence 33222 44554 47889999999999999999999999876432 3467889999999999
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHhheeEEEeecc-CC--CCCCCCCCCCCcc-hhhhhHHHhhhccccchhhhhhhcc
Q psy4524 244 LCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDV-PS--ISERNPGGNLKEL-PLFFGTVMFSMSAIGIIMPLENEMR 319 (929)
Q Consensus 244 L~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~faf~~~~~~~~i~~eMk 319 (929)
++++|++++++|+|.+|.+.......+..+.+..++ .. .+......+.... ++++|++.|+|.+|.++||||++||
T Consensus 176 ~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk 255 (437)
T KOG1303|consen 176 LSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMK 255 (437)
T ss_pred HHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcC
Confidence 999999999999999999866544444444443332 11 1122222222222 7999999999999999999999999
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy4524 320 SPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVW 399 (929)
Q Consensus 320 ~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~ 399 (929)
+|++|+| ++.++..+++.+|+.++++||++|||+++|+++.|+++..++...+++++.++++.++.++..|..+.+|
T Consensus 256 ~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E 332 (437)
T KOG1303|consen 256 SPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVE 332 (437)
T ss_pred Cchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHH
Confidence 9999998 7799999999999999999999999999999999996445788899999999999999999999999999
Q ss_pred HhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhhhhhhhhhhcccchhhccccccccccCCCccch
Q psy4524 400 NCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYSET 479 (929)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~ 479 (929)
+..-.++.+..+...+.|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|++||++. +++++++++
T Consensus 333 ~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~-----~k~~~~s~~ 407 (437)
T KOG1303|consen 333 KLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI-----KKPKRFSPK 407 (437)
T ss_pred HHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHH
Confidence 887433332111234578899999999999999999999999999999999999999999999875 234445555
Q ss_pred hhhhh
Q psy4524 480 LFHML 484 (929)
Q Consensus 480 ~~~~~ 484 (929)
|+..+
T Consensus 408 ~~~~~ 412 (437)
T KOG1303|consen 408 WLLNW 412 (437)
T ss_pred HHHHH
Confidence 55333
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=421.45 Aligned_cols=390 Identities=23% Similarity=0.365 Sum_probs=312.1
Q ss_pred hhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccc--c
Q psy4524 60 FSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALC--L 137 (929)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~--~ 137 (929)
++..++++|+....+ |+|+|++|++|+++||++|++++++++.++.||.++|.++.++.. +
T Consensus 3 ~s~~~~~~~l~~~~i-----------------G~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~ 65 (409)
T PF01490_consen 3 GSWFSAFFNLINSII-----------------GAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGT 65 (409)
T ss_pred ccHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccc
Confidence 457889999999998 999999999999999999999999999999999999999955432 2
Q ss_pred ccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhH
Q psy4524 138 PFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNL 217 (929)
Q Consensus 138 ~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l 217 (929)
+. .+|+|+++ ..+ +++++.+++ +++.+.++|.|++|+++++|.+
T Consensus 66 ~~--~~y~~l~~-------------------------------~~~--G~~~~~~~~-~~~~~~~~g~~v~y~i~~~~~l 109 (409)
T PF01490_consen 66 GR--RSYGDLAR-------------------------------RAF--GPKGKWFVD-ICIFIYLFGSCVAYLIIIGDSL 109 (409)
T ss_pred cc--cccccccc-------------------------------ccc--ccccccccc-chheeccccccceeEEEeeeee
Confidence 22 25555544 444 233455555 4888999999999999999999
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCC----CCCC--CCCC
Q psy4524 218 KAVADQYYG--DHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPS----ISER--NPGG 289 (929)
Q Consensus 218 ~~l~~~~~~--~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~----~~~~--~~~~ 289 (929)
+++.+...+ ..++.++.++..++++|++++|+++++++.|.+|++++++.+.++++......+. .+.. ....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
T PF01490_consen 110 SSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFI 189 (409)
T ss_pred ecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccc
Confidence 999887544 3466777788888999999999999999999999999877533333322222211 1111 1234
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCCC
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGD 369 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~~ 369 (929)
++.+++.++|+++|||.||.++||+++|||+|++++|..++...++.+++++|..+|++||++||++++++++.|+|+++
T Consensus 190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~ 269 (409)
T PF01490_consen 190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD 269 (409)
T ss_pred hhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence 55689999999999999999999999999999998866668899999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhh-----c-cccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHH
Q psy4524 370 LLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKT-----H-MEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFIS 443 (929)
Q Consensus 370 ~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~ 443 (929)
+...++++++.++++.+||++.+|+++.+++.+.++ + .+.+..+++++..+|+.+++.+.++|+.+||++++++
T Consensus 270 ~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~ 349 (409)
T PF01490_consen 270 VLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIIS 349 (409)
T ss_pred cccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhc
Confidence 888999999999999999999999999999988642 1 1222234466779999999999999999999999999
Q ss_pred HHhhhhhhhhhhcccchhhccccccccccCCCccchhhhhhhhhcccccccchhHHHhhhhHHHHHHHHHHhhhhhHHHH
Q psy4524 444 LIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYSETLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIH 523 (929)
Q Consensus 444 lvGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~g~y~si 523 (929)
++||++++.++|++|+++|+|.++... .+..++... ...++..+ +.|++.++.|+|+++
T Consensus 350 l~Ga~~~~~i~fi~P~l~~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~~---~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 350 LVGALFGSFISFILPALLYLKLFKRKR-----NSFGWWWIL-------------SILNWIII---VFGVVLMVFGTYQSI 408 (409)
T ss_pred ccchHHHHhHHHHHHHHHHHHhhcccc-----cccceeehh-------------hccceEEE---EEeeehhHHhHHHHc
Confidence 999999999999999999998654221 111112110 11333444 788888899999876
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=378.62 Aligned_cols=308 Identities=15% Similarity=0.141 Sum_probs=251.8
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
-+++|..++.+|++|+++|+|+|+||+||+++||++|++++++++.++.||.++|.+++++ .+..||+|+++++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~------~~~~sY~~la~~~ 130 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK------TNIRTYEGVARVL 130 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCCHHHHHHHH
Confidence 3678889999999999999999999999999999999999999999999999999998853 2345999999998
Q ss_pred hccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC------CC-chHHHHHHHHHHHHhhhccc
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG------VT-DLRLYMLVLFPPLLLISWVP 749 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~------~~-~~~~~~~i~~~~~~pl~~~~ 749 (929)
+ ||++++++++.+.++++|+|++|+++++|+++++++.... .. ++..+.+++.++++|++++|
T Consensus 131 ~----------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r 200 (467)
T PTZ00206 131 L----------GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPR 200 (467)
T ss_pred h----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhccccc
Confidence 8 8999999999999999999999999999999998864211 11 12233445667789999999
Q ss_pred CchhhhhHHHHHHHHHHHHHhhhhheecc-CCCC-CC----------CCCCccCCCchhHHHHHHHHhhccccccccccc
Q psy4524 750 NLKYIVPFSSSATGVMFVSLAITMYYILG-DFPS-FS----------DRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLEN 817 (929)
Q Consensus 750 ~l~~l~~~S~~~~~~~~~~~iii~~~~~~-~~~~-~~----------~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~ 817 (929)
++++++++|.+++.++++.++.++++... +.|+ .+ +.+.+....+.+.++|+++|||.||.|+|++++
T Consensus 201 ~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~ 280 (467)
T PTZ00206 201 HIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYM 280 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHH
Confidence 99999999999999887777666554432 2221 11 111222234577899999999999999999999
Q ss_pred ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc-CCCChHHHHHHHHHHHHHHHHhccchhHHH
Q psy4524 818 EMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNL-PQEDTLAVSVKLLLSVSILFTFALPHFIVY 896 (929)
Q Consensus 818 ~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~-~~~~~~~~i~~~~~~i~l~~syPL~~~p~~ 896 (929)
|||+|+. +|+.+++..++.+++++|..+|++||++||+++++|+++|+ |.+|....++++++.++++++|||+.+|+|
T Consensus 281 ~M~~~t~-~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r 359 (467)
T PTZ00206 281 DMTNRSV-GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACR 359 (467)
T ss_pred hhcccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 9999764 34445999999999999999999999999999999999999 566788999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCCchhHHHHhhhee
Q psy4524 897 DIVWNRYLKLRMNKSPSHTALEYGFRTL 924 (929)
Q Consensus 897 ~~i~~~~l~~~~~~~~~~~~~~~~~r~~ 924 (929)
+.+++. +..+.+ +.+.|++...|..
T Consensus 360 ~~i~~~-~~~~~~--~~~~~~~~~~~~~ 384 (467)
T PTZ00206 360 NALYDV-IGWDAR--KVAFWKHCIAVVT 384 (467)
T ss_pred HHHHHH-hCCCcc--cCchhhHHHHHHH
Confidence 999988 533322 2234555444443
|
|
| >KOG1305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=352.68 Aligned_cols=350 Identities=21% Similarity=0.275 Sum_probs=285.8
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccc
Q psy4524 61 SAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFM 140 (929)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~ 140 (929)
+..++++|++.+.. |||||++|+||++.|+++|++++..+|.++.++.+++.+++++.+.+
T Consensus 7 s~~~~v~nl~~ti~-----------------GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-- 67 (411)
T KOG1305|consen 7 SFRSAVFNLVNTIM-----------------GAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-- 67 (411)
T ss_pred chhhhHHHHHhhhh-----------------ccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--
Confidence 57889999999988 99999999999999999999999999999999999999998877644
Q ss_pred cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy4524 141 SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAV 220 (929)
Q Consensus 141 ~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l 220 (929)
+|++.++.. + | +.++... .+.+.....| |++|+++++|.++.+
T Consensus 68 --ty~~l~~~~----~-------------------g----------~~g~~~~-~v~~~~~~~g-~i~yliiigd~~p~~ 110 (411)
T KOG1305|consen 68 --TYSSLGDLI----F-------------------G----------KLGKVDA-AVAVKCFGVG-MVSYLIIIGDLLPGF 110 (411)
T ss_pred --CHHHHHHHH----c-------------------C----------CCceeee-hhhHHhhhcc-ceEEEEEEccccchh
Confidence 888888875 1 1 1111111 1233344445 699999999999866
Q ss_pred HHhhcC-CC------ChhH-HHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccC---CCC-CCCCC
Q psy4524 221 ADQYYG-DH------DIRF-YMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVP---SIS-ERNPG 288 (929)
Q Consensus 221 ~~~~~~-~~------~~~~-~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~---~~~-~~~~~ 288 (929)
...... +. +++. ++++...+++||++.|+++++++.|.++++++.+.+..++++...... +.. ..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~ 190 (411)
T KOG1305|consen 111 IRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNL 190 (411)
T ss_pred hhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCc
Confidence 654321 11 2222 467888889999999999999999999999999999888887766432 111 11222
Q ss_pred CCCCcchhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCC
Q psy4524 289 GNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAG 368 (929)
Q Consensus 289 ~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~ 368 (929)
..+.+...++++++|||.||.|..++++|||||++ +|+.++...+...++++|..+|.+||+.||+++.+|++.++|++
T Consensus 191 ~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~ 269 (411)
T KOG1305|consen 191 SSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSI 269 (411)
T ss_pred chhhhhhhhhhhhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcc
Confidence 22357889999999999999999999999999974 34444889999999999999999999999999999999999975
Q ss_pred ChH------HHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHH
Q psy4524 369 DLL------AQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFI 442 (929)
Q Consensus 369 ~~~------~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl 442 (929)
+.. ...++..+.++.+.++|+..+|+|..+...++++..+.......++++++..+.....+.|+++|++++++
T Consensus 270 ~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~ 349 (411)
T KOG1305|consen 270 LNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIF 349 (411)
T ss_pred cchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 433 47889999999999999999999999998887755543333445677889999999999999999999999
Q ss_pred HHHhhhhhhhhhhcccchhhccccc
Q psy4524 443 SLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 443 ~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
+++||++++.++|++|+++|++.++
T Consensus 350 ~~vGAT~~~~i~FI~P~~~yl~~~~ 374 (411)
T KOG1305|consen 350 GFVGATSSTSISFILPALYYLKASK 374 (411)
T ss_pred HHhhhhhhhhhHHHHHHHhhheeec
Confidence 9999999999999999999998765
|
|
| >KOG1303|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=350.82 Aligned_cols=320 Identities=19% Similarity=0.299 Sum_probs=275.6
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
..+++.|++++.+|.+|.++|.|+|+||||+++.||+.|+++++..++++.||..+|.+|.+..+....++..+|.|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 34667999999999999999999999999999999999999999999999999999999998877666666678999999
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC---CCchHHHHHHHHHHHHhhhcccCc
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG---VTDLRLYMLVLFPPLLLISWVPNL 751 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l 751 (929)
++| |+++++++...+.+.++|+++.|++..+|++..+++.... ..+.+.|++++.++.+|++++||+
T Consensus 113 ~af----------G~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 113 AAF----------GPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF 182 (437)
T ss_pred HHh----------CCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc
Confidence 998 6777999999999999999999999999999999998765 234678999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhheeccCCCCC-CCCCCccCCCch---hHHHHHHHHhhcccccccccccccCCCccccc
Q psy4524 752 KYIVPFSSSATGVMFVSLAITMYYILGDFPSF-SDRTPVGHLSDL---PLFVGVTLFSLSSIGVTMPLENEMQHPRQFTA 827 (929)
Q Consensus 752 ~~l~~~S~~~~~~~~~~~iii~~~~~~~~~~~-~~~~~~~~~~~~---~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~ 827 (929)
+.++++|..+.+..+....+..+....++.+. .......++... +.++|++.|+|++|..+|+||++||+|.+|+|
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~ 262 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK 262 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh
Confidence 99999999999888666555555555443222 121222223222 58999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhhc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLR 907 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~~ 907 (929)
++..++.+++.+|..+++.||++|||++++|++.|+++..|+...+++++.++++.+|+....|..+.+|+. ...+
T Consensus 263 ---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~-~~~~ 338 (437)
T KOG1303|consen 263 ---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKL-IGVK 338 (437)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHH-hccC
Confidence 999999999999999999999999999999999999633599999999999999999999999999999999 6655
Q ss_pred cCC-CCchhHHHHhhheeeEEE
Q psy4524 908 MNK-SPSHTALEYGFRTLIVVI 928 (929)
Q Consensus 908 ~~~-~~~~~~~~~~~r~~~v~~ 928 (929)
.++ +++..+.|...|+.++..
T Consensus 339 ~~~~~~~~~~~R~~~Rt~~v~~ 360 (437)
T KOG1303|consen 339 HPDFKKRSLVLRLLVRTFFVAV 360 (437)
T ss_pred CccccccccceeeehhhHHHHH
Confidence 552 224557888888877643
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=371.11 Aligned_cols=318 Identities=27% Similarity=0.465 Sum_probs=272.8
Q ss_pred CCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Q psy4524 598 KPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 677 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f 677 (929)
||+|++++.+|++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.+++++.+ ++++..+|+|++++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999997654 3345679999998766
Q ss_pred ccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 678 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG--VTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 678 ~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
||++++++++++.+.++|.+++|+++.+|.+.++++...+ ..++..+.++..++++|++++|++++++
T Consensus 79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred ----------cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHH
Confidence 8999999999999999999999999999999999988654 4567777788888999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhheeccCC----CCCCCC--CCccCCCchhHHHHHHHHhhcccccccccccccCCCcccccch
Q psy4524 756 PFSSSATGVMFVSLAITMYYILGDF----PSFSDR--TPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARL 829 (929)
Q Consensus 756 ~~S~~~~~~~~~~~iii~~~~~~~~----~~~~~~--~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~ 829 (929)
+.|.++.++++..+.++........ .+.++. ....++.+++.++|+++|||.||+++|++++|||+|++++|+.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~ 228 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMK 228 (409)
T ss_pred HHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccc
Confidence 9999999999864333322222221 111111 1234456889999999999999999999999999999988777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhhc--
Q psy4524 830 GVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLR-- 907 (929)
Q Consensus 830 ~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~~-- 907 (929)
++...++.+++++|..+|+.||++||+++++|+++|+|++++...++++++.++++.+||++.+|+++.+++. +.++
T Consensus 229 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~-~~~~~~ 307 (409)
T PF01490_consen 229 KVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL-LFKRAA 307 (409)
T ss_pred eeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh-eecccc
Confidence 7999999999999999999999999999999999999998889999999999999999999999999999999 6543
Q ss_pred -----cCCCCchhHHHHhhheeeEEE
Q psy4524 908 -----MNKSPSHTALEYGFRTLIVVI 928 (929)
Q Consensus 908 -----~~~~~~~~~~~~~~r~~~v~~ 928 (929)
.++.+.+++++...|+.++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (409)
T PF01490_consen 308 SSRDSPKNTPSSRWLRYLIRIILVLL 333 (409)
T ss_pred ccccccccccccceeeeeeecchhhh
Confidence 222234567788888776654
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >KOG4303|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=303.19 Aligned_cols=379 Identities=19% Similarity=0.242 Sum_probs=305.2
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccc----cccCChHHHHHhhhhccccCCCcchh
Q psy4524 89 RTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLP----FMSIGFPAIVDLLTFWDHHQGAGKVF 164 (929)
Q Consensus 89 ~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~----~~~~sy~~~~~~~~~~~~~~g~~~~~ 164 (929)
+.=|-=|++||+|....||. |+..++.++.++.||+.+|++|..+.+++ ..|.||-+++..+ .+|+.+
T Consensus 129 AIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C------~~P~lG- 200 (524)
T KOG4303|consen 129 AIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFC------YKPGLG- 200 (524)
T ss_pred hhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHh------cCCCcc-
Confidence 34455679999999999998 89999999999999999999998877731 1245888888876 222211
Q ss_pred hhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHh
Q psy4524 165 FVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLL 244 (929)
Q Consensus 165 ~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL 244 (929)
+..+. +...+-.+.+|+.|++..+|.+..-++.. ..+.+-|+++....++|.
T Consensus 201 -------------------------gr~V~-~AQliELlmTCIlYvVv~gdLl~~~fP~~--svd~~sWm~i~~a~LLpc 252 (524)
T KOG4303|consen 201 -------------------------GRWVL-AAQLIELLMTCILYVVVAGDLLQSCFPGL--SVDKASWMMITSASLLPC 252 (524)
T ss_pred -------------------------hheee-HHHHHHHHHHHHhhhheechhhhccCCCC--CccccchhhhhhHHHhhh
Confidence 12222 25666778999999999999988877642 457888999999999999
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCCCC--CCCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCCC
Q psy4524 245 CWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPSIS--ERNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS 322 (929)
Q Consensus 245 ~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~ 322 (929)
+++|+++-.+-+|....++-++.-++++.|+.....+++ ......+.++++..+|+++|+|..|.-.|+++.+|+||+
T Consensus 253 ~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps 332 (524)
T KOG4303|consen 253 SFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChh
Confidence 999999999999999988877666666666654443322 222334667899999999999999999999999999999
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh
Q psy4524 323 KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY 402 (929)
Q Consensus 323 ~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~ 402 (929)
+|.-+ +.++-+...++-..+|.+||++||++++..|.+|+|.. -...++++...++.+.||||..+.+.+.+++.+
T Consensus 333 ~Fn~M---l~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nl 408 (524)
T KOG4303|consen 333 QFNVM---LKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-SFKILVNLFLVVKALLSYPLPFYAAVELLENNL 408 (524)
T ss_pred Hheee---eehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhh
Confidence 99984 58999999999999999999999999999999999964 466788999999999999999999999999988
Q ss_pred hhhcccc--------ChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhhhhhhhhhhcccchhhccccccccccCC
Q psy4524 403 LKTHMEK--------NSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPL 474 (929)
Q Consensus 403 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~~~~~~~~ 474 (929)
++..... +..-+-|...+|..+++.+++.|+++|+|..++|++|++.|+.++|+.|++||+|.+++.++|.+
T Consensus 409 F~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e 488 (524)
T KOG4303|consen 409 FLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFE 488 (524)
T ss_pred hcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 7633221 11122334477999999999999999999999999999999999999999999997664444433
Q ss_pred CccchhhhhhhhhcccccccchhHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q psy4524 475 GYSETLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMVVAQYVLC 533 (929)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~g~y~si~~i~~~~~~~ 533 (929)
. .+...++ +.|..+|+.|.|-|.+.++++|...
T Consensus 489 ~-----------------------~fD~~Ii---~~G~~~~vsG~y~S~~~Li~A~~~~ 521 (524)
T KOG4303|consen 489 K-----------------------RFDQGII---IMGCSVCVSGVYFSSMELIRAINSA 521 (524)
T ss_pred H-----------------------hhheeEE---EEeeeEEEEeEehhhHHHHHHHhcc
Confidence 1 1333344 7778889999999999999988654
|
|
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=321.16 Aligned_cols=312 Identities=16% Similarity=0.148 Sum_probs=252.1
Q ss_pred cccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----
Q psy4524 594 AVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT----- 668 (929)
Q Consensus 594 ~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~s----- 668 (929)
+...+++|..++.+|+++..+|.|+|+||+||+++||++|++.+++.++++.||.+++.+++.+.+++.+.+..+
T Consensus 40 ~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~ 119 (473)
T PLN03074 40 SLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHV 119 (473)
T ss_pred ecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHH
Confidence 344678999999999999999999999999999999999999999999999999999999987766544333333
Q ss_pred --HHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhh
Q psy4524 669 --YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLIS 746 (929)
Q Consensus 669 --y~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~ 746 (929)
|.|+++.. +||+++.+..+...+++++.|+.|++..++++..+. +..+.+.|++++.++.+|++
T Consensus 120 ~~~~e~~~~~----------~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~----~~~~~~~~~~i~~~v~~~~~ 185 (473)
T PLN03074 120 IQWFEVLDGL----------LGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTV 185 (473)
T ss_pred HHHHHHHHHh----------cChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC----CCcCCCeEEeehHHHHHHHH
Confidence 45555544 489999999999999999999999999888877652 25678889999999999999
Q ss_pred cccCchhhhhHHHHHHHHHHHHHhhhhheeccCC--CCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcc
Q psy4524 747 WVPNLKYIVPFSSSATGVMFVSLAITMYYILGDF--PSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ 824 (929)
Q Consensus 747 ~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~ 824 (929)
++|++++++++|.++..+++++.+.+......+. ++.++ ....+...++...++++|+|++|..+|++++|||||+|
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~ 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhc
Confidence 9999999999999999876554433333333221 11211 11122334455566799999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc--ccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhh
Q psy4524 825 FTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQG--SITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 825 ~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~--~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~ 902 (929)
|++ +...+...++..|..+|+.||+.|||++++ +.+.|+|++ .+..++++++.++++.+||++++|..+..|+.
T Consensus 265 F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~ 340 (473)
T PLN03074 265 FKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-GWRDAAVILMLIHQFITFGFACTPLYFVWEKA 340 (473)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 998 788899999999999999999999999764 557778875 46789999999999999999999999998888
Q ss_pred hhhhccCCCCchhHHHHhhheeeEEE
Q psy4524 903 YLKLRMNKSPSHTALEYGFRTLIVVI 928 (929)
Q Consensus 903 ~l~~~~~~~~~~~~~~~~~r~~~v~~ 928 (929)
+..+ + .+..+.|..+|+.++++
T Consensus 341 -~~~~--~-~k~~~~r~~~R~~lv~~ 362 (473)
T PLN03074 341 -IGVH--D-TKSICLRALARLPVVVP 362 (473)
T ss_pred -hccc--c-cccHHHHHHHHHHHHHH
Confidence 5543 2 34567889999887754
|
|
| >KOG1305|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-32 Score=300.90 Aligned_cols=302 Identities=22% Similarity=0.288 Sum_probs=249.2
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
+++.|.+++++|+.|+++|+|++++|+||++.|.+.|++++.++|.++.++.+++.+++++.+++ +|++++++.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~------ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER------TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC------CHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999654432 999999998
Q ss_pred hccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CC------chHH-HHHHHHHHHHhhhcc
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VT------DLRL-YMLVLFPPLLLISWV 748 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~------~~~~-~~~i~~~~~~pl~~~ 748 (929)
+ |+.++....+.......| +++|+++++|.++........ +. +++. +++....++.|++..
T Consensus 77 ~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~ 145 (411)
T KOG1305|consen 77 F----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLL 145 (411)
T ss_pred c----------CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHH
Confidence 7 677766666555555555 699999999999977665443 11 2222 466778888999999
Q ss_pred cCchhhhhHHHHHHHHHHHHHhhhhheeccCCC---CCC-CCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcc
Q psy4524 749 PNLKYIVPFSSSATGVMFVSLAITMYYILGDFP---SFS-DRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ 824 (929)
Q Consensus 749 ~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~~---~~~-~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~ 824 (929)
|+++++++.|.++..++...++++.+....... ... ..+....+++....+++++|||.||+|+.++++|||+|++
T Consensus 146 k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 146 KNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 999999999999999998888877777665332 111 1122222257889999999999999999999999999985
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChH------HHHHHHHHHHHHHHHhccchhHHHHH
Q psy4524 825 FTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTL------AVSVKLLLSVSILFTFALPHFIVYDI 898 (929)
Q Consensus 825 ~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~------~~i~~~~~~i~l~~syPL~~~p~~~~ 898 (929)
+|+.++...+...+.++|...|.+||++|||++++|++.|+++++.. ...++..+.++.+.++|+..+|+|..
T Consensus 226 -~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~ 304 (411)
T KOG1305|consen 226 -KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN 304 (411)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 67777999999999999999999999999999999999999886433 57999999999999999999999999
Q ss_pred HHhhhhhhccCCCCchhHH
Q psy4524 899 VWNRYLKLRMNKSPSHTAL 917 (929)
Q Consensus 899 i~~~~l~~~~~~~~~~~~~ 917 (929)
+++. +.++.++.++..+.
T Consensus 305 l~~~-~~~~~~~~~~~s~~ 322 (411)
T KOG1305|consen 305 LDEL-LFPYQPGLTSFSGK 322 (411)
T ss_pred HHHH-hcccCCCCCCccce
Confidence 9999 55555532333333
|
|
| >KOG4303|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-33 Score=282.52 Aligned_cols=318 Identities=23% Similarity=0.327 Sum_probs=276.0
Q ss_pred cccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCHHH
Q psy4524 594 AVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR--IPSLTYPE 671 (929)
Q Consensus 594 ~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~--~~~~sy~~ 671 (929)
.+...|.+.+++..|..|.+-|.=+++||+|+...||. ++..++.++.+++||..+|++|.++-+++.+ +...||.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 34457899999999999999999999999999999997 9999999999999999999999976443211 23469999
Q ss_pred HHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCc
Q psy4524 672 ILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNL 751 (929)
Q Consensus 672 l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 751 (929)
+++.+++ -+.|.+.+++.+.+.++.+|+.|++..+|.+..-++.. +.+++.|+++....++|.+++|++
T Consensus 190 IA~~C~~---------P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~--svd~~sWm~i~~a~LLpc~FLk~L 258 (524)
T KOG4303|consen 190 IADFCYK---------PGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL--SVDKASWMMITSASLLPCSFLKDL 258 (524)
T ss_pred HHHHhcC---------CCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC--CccccchhhhhhHHHhhhHHHHHH
Confidence 9999874 23556778999999999999999999999988777654 678999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhheeccCCCCCC--CCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcccccch
Q psy4524 752 KYIVPFSSSATGVMFVSLAITMYYILGDFPSFS--DRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARL 829 (929)
Q Consensus 752 ~~l~~~S~~~~~~~~~~~iii~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~ 829 (929)
+..+.+|.+++.+-++.-++++.|+.....+|+ ......+.+.+|..+|+++|+|+.|...|.++..|++|++|.-
T Consensus 259 k~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~-- 336 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV-- 336 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHhee--
Confidence 999999999999998888888888887766654 3344466789999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhhccC
Q psy4524 830 GVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLRMN 909 (929)
Q Consensus 830 ~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~~~~ 909 (929)
.+.++-+...++-..+|..||++|||.+|..|++|+|+. -+..++++++.+.-++||||.+|.+.+.+|+. ++...+
T Consensus 337 -Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-sfk~~VN~fLV~KALLSYPLPfyAAvelLe~n-lF~g~p 413 (524)
T KOG4303|consen 337 -MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-SFKILVNLFLVVKALLSYPLPFYAAVELLENN-LFLGYP 413 (524)
T ss_pred -eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-chhhhhhHHHHHHHHHcCCchHHHHHHHHHHh-hhcCCC
Confidence 789999999999999999999999999999999999985 78889999999999999999999999999999 777766
Q ss_pred CCC---------chhHHHHhhheeeEEE
Q psy4524 910 KSP---------SHTALEYGFRTLIVVI 928 (929)
Q Consensus 910 ~~~---------~~~~~~~~~r~~~v~~ 928 (929)
+.. .-+.+.+.+|+.+|+.
T Consensus 414 ~t~Fpscys~Dg~Lk~WgltlR~~lvvf 441 (524)
T KOG4303|consen 414 QTPFPSCYSPDGSLKEWGLTLRIILVVF 441 (524)
T ss_pred CCCCceeeCCCcchhhheeeeeeHHHHH
Confidence 542 2245566677766654
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=246.72 Aligned_cols=347 Identities=18% Similarity=0.170 Sum_probs=264.8
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccc
Q psy4524 61 SAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFM 140 (929)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~ 140 (929)
+..+++++++.+.+ |||+|++|.+++..|++++++++++.+.++.+|.+++.|+.++...++.
T Consensus 10 s~~~~vl~l~gT~I-----------------GAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~ 72 (415)
T COG0814 10 SDLGGVLILAGTAI-----------------GAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKA 72 (415)
T ss_pred chHHHHHHHHcccc-----------------ccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 57888999999998 9999999999999999999999999999999999999999666554422
Q ss_pred cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy4524 141 SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAV 220 (929)
Q Consensus 141 ~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l 220 (929)
++.++++.. . +|.++.+++ ....+.+++.+.+|.+..+|.+++.
T Consensus 73 --~~~~~~~~~------~---------------------------G~~~~~li~-~s~~~~~~~~~~aY~~~~g~~l~~~ 116 (415)
T COG0814 73 --SITSLVEDY------L---------------------------GKKGGILIG-LSYFFALYGLLVAYIVGIGNLLASF 116 (415)
T ss_pred --cHHHHHHHH------h---------------------------CcchHHHHH-HHHHHHHHHHHHHHHhcchhHHHHH
Confidence 566666654 2 233345554 4888999999999999999999999
Q ss_pred HHhhcCC--CChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCCCCCC--CC-CCCCCcch
Q psy4524 221 ADQYYGD--HDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISER--NP-GGNLKELP 295 (929)
Q Consensus 221 ~~~~~~~--~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~~~~~--~~-~~~~~~~~ 295 (929)
+++.... .++++..++.+.++.++++.++...+++.|.+....+.+.++...+......++.-.. .. +..+..+.
T Consensus 117 ~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 196 (415)
T COG0814 117 LGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLL 196 (415)
T ss_pred HHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHH
Confidence 9875443 5778888888888899999999999999999999988877777666654432211111 11 35566788
Q ss_pred hhhhHHHhhhccccchhhhhhhccCCCC--CCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCCChHHH
Q psy4524 296 LFFGTVMFSMSAIGIIMPLENEMRSPSK--FTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAGDLLAQ 373 (929)
Q Consensus 296 ~~~~~~~faf~~~~~~~~i~~eMk~p~~--~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~~~~~~ 373 (929)
.++|+++|||+||+++|++++|||++++ .+| +...+..+..++|+.+++++|..+|+.+.+++++++++++.. .
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~-l 272 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISL-L 272 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHH-H
Confidence 9999999999999999999999998864 666 779999999999999999999999999999999999765432 2
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHh-------------hhhh-ccccChhhhHHH--HHHHHHHHHHHHHHHHHccc
Q psy4524 374 SVKVMLALAIFCTFALPQYIVYNIVWNC-------------YLKT-HMEKNSLATMWI--YVLKTTICIITFAFAIMIPN 437 (929)
Q Consensus 374 i~~~~~~i~l~~s~pl~~~p~~~~~~~~-------------~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~iA~~iP~ 437 (929)
........+...+++.+.++.....-+. .+++ +.+.++...+.+ ...........+..+...|.
T Consensus 273 ~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 352 (415)
T COG0814 273 SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGY 352 (415)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHh
Confidence 3333344444466677766666442110 0111 111111112222 23344466678888999999
Q ss_pred hhHHHHHHhhhhhhhhhhcccchhhcc
Q psy4524 438 LELFISLIGSLCLPFMAIGLPALLRST 464 (929)
Q Consensus 438 ~~~vl~lvGa~~~~~l~fi~P~l~~l~ 464 (929)
.+.+++.+|+.....+.++.|...+.|
T Consensus 353 ~~~~~~~iga~i~~~ll~~~p~~~~~~ 379 (415)
T COG0814 353 AGGLIATIGAPIIPALLFIKPRKLIYK 379 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999887755
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=246.11 Aligned_cols=288 Identities=20% Similarity=0.217 Sum_probs=236.1
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
+.+.+.+..++++++.+|++|+|+|++|++++..|++++++++++++..++++.+++.|+.++.++ +..+|.++++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~ 79 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVE 79 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHH
Confidence 445778899999999999999999999999999999999999999999999999999999975442 2248999999
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-C-CchHHHHHHHHHHHHhhhcccCch
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-V-TDLRLYMLVLFPPLLLISWVPNLK 752 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~-~~~~~~~~i~~~~~~pl~~~~~l~ 752 (929)
+.+ ||++++++++...+.+++.+.+|.+..+|.+++.++.... + .+++...+++..++.++++.++..
T Consensus 80 ~~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~ 149 (415)
T COG0814 80 DYL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLA 149 (415)
T ss_pred HHh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhH
Confidence 877 8999999999999999999999999999999999997555 3 678888888889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhhheeccCCCCC-CCCCC--ccCCCchhHHHHHHHHhhcccccccccccccCCCcccccch
Q psy4524 753 YIVPFSSSATGVMFVSLAITMYYILGDFPSF-SDRTP--VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARL 829 (929)
Q Consensus 753 ~l~~~S~~~~~~~~~~~iii~~~~~~~~~~~-~~~~~--~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~ 829 (929)
.++..|.+....+.+.++...+......++. ...+. ...+..+...+|+++|||+||+|+|++++||+++++ ++.+
T Consensus 150 ~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~-~~~~ 228 (415)
T COG0814 150 VLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK-KAVR 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh-HHHH
Confidence 9999999999998877777766655432111 11111 244567788999999999999999999999998875 2344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHH
Q psy4524 830 GVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDI 898 (929)
Q Consensus 830 ~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~ 898 (929)
++...+..+..++|..++..+|..+|+++.++++++.++++. ..........+...++|.+++++..+
T Consensus 229 k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai 296 (415)
T COG0814 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNIS-LLSALAGVINSPILSIALNIFALFAI 296 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHH-HHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999987632 22233333333335555555555533
|
|
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=178.25 Aligned_cols=332 Identities=14% Similarity=0.107 Sum_probs=223.2
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhh
Q psy4524 88 DRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVL 167 (929)
Q Consensus 88 ~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~ 167 (929)
+-++|+||+++|.+++..|..++.+.+++.+.++.++..++.|.+.+. ++.. ++.|.++..
T Consensus 8 gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p~~~--~~~~~~~~~---------------- 68 (381)
T TIGR00837 8 GTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-PGGA--SFNTIAKDL---------------- 68 (381)
T ss_pred hhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--CHHHHHHHH----------------
Confidence 345699999999999999999999999999999999999999996543 2222 666666654
Q ss_pred hhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcC-CCChhHHHHHHHHHHHHhhc
Q psy4524 168 KNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYG-DHDIRFYMLLIFFPILLLCW 246 (929)
Q Consensus 168 ~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pL~~ 246 (929)
+ +|+++.++. +.....++..+++|....++.+..+++.... ..+.++..++..+++.++.
T Consensus 69 ---------------~--G~~~g~~~~-~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~- 129 (381)
T TIGR00837 69 ---------------L--GKTGNIIAG-LSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFV- 129 (381)
T ss_pred ---------------h--CHHHHHHHH-HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-
Confidence 1 122233332 3566778899999999999999988875433 2334444444444444443
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhheeEEEeecc-CC-CCCC-CCCCCCCcchhhhhHHHhhhccccchhhhhhhccCC-C
Q psy4524 247 IRNLKLLAPFSTLATAITIASFGITLYYVFTDV-PS-ISER-NPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSP-S 322 (929)
Q Consensus 247 ~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~ 322 (929)
.+..+..+.++.+.+...+..++..+.....+. ++ ..+. ..+.++.++..+++...++|++|.+++++.+|++|| |
T Consensus 130 ~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k 209 (381)
T TIGR00837 130 WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVK 209 (381)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHH
Confidence 455677777777766655444333222222111 10 0010 011244566788899999999999999999999744 5
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCccccc-------------ccccCCCChHHHHHHHHHHHHHHHHhcc
Q psy4524 323 KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSV-------------TLNLPAGDLLAQSVKVMLALAIFCTFAL 389 (929)
Q Consensus 323 ~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~i-------------L~~~~~~~~~~~i~~~~~~i~l~~s~pl 389 (929)
+.+| +...+..+++++|+++........+.+.-.+. +.+.-.+.+...+...+-.++++.|+.-
T Consensus 210 ~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g 286 (381)
T TIGR00837 210 KVKK---SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLG 286 (381)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 6666 77999999999999987776666554321111 1111112234556677777888888888
Q ss_pred chhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccchh-HHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 390 PQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLE-LFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 390 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~-~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
.....+|.+.+.+ +++.+++ +++....+..+...++|.+.|+.. ..++..| ++++.+.+++|++++.|.|+
T Consensus 287 ~~l~~~d~l~~~~-~~~~~~~-----~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~ 358 (381)
T TIGR00837 287 VTLGLFDYLADLF-KFDDSKK-----GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARK 358 (381)
T ss_pred HHHHHHHHHHHHh-CCCcccC-----CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8888888866554 3221111 123344555678889999999977 9999999 88999999999999977553
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=164.74 Aligned_cols=291 Identities=11% Similarity=0.082 Sum_probs=203.1
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
++|.+...+++.+..|.||+|+|+||.+.++.|+.++++++++++....||..++.|+..+.+ +..++..++|+.
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~ 80 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDL 80 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHH
Confidence 455588899999999999999999999999999999999999999999999999999986442 346899999977
Q ss_pred hccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
+ ||.++.+.++...+..++.+.+|+.-.|+.+++.++...+ ..+.+...+++.++..+..+..+ +...
T Consensus 81 L----------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd 149 (415)
T PRK09664 81 I----------GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAAS 149 (415)
T ss_pred c----------ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHH
Confidence 6 8999999999999999999999999999999999976332 44455444555555555555433 5555
Q ss_pred hHHHHHHHHHHHHHhhhhheeccCC--CCCCCCCCccC----CCchhHHHHHHHHhhcccccccccccccCCC-cccccc
Q psy4524 756 PFSSSATGVMFVSLAITMYYILGDF--PSFSDRTPVGH----LSDLPLFVGVTLFSLSSIGVTMPLENEMQHP-RQFTAR 828 (929)
Q Consensus 756 ~~S~~~~~~~~~~~iii~~~~~~~~--~~~~~~~~~~~----~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p-~~~~~~ 828 (929)
+.+-+=...++++++..+.....+. +...+.++... +......++++.+||+.|.++|++.+.+++. ++.+
T Consensus 150 ~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~-- 227 (415)
T PRK09664 150 RITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLI-- 227 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHH--
Confidence 5554444443333333222222111 11111111110 1236678999999999999999999998753 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--H---------HHhcccccccc---cccccCCCChHHHHHHHHHHHHHHHHhccchhH
Q psy4524 829 LGVLNVSSAINTTIFAAFGLL--A---------YLKYGDEVQGS---ITLNLPQEDTLAVSVKLLLSVSILFTFALPHFI 894 (929)
Q Consensus 829 ~~v~~~s~~~~~~~Y~~~g~~--g---------Y~~fG~~~~~~---il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p 894 (929)
+++.....+..++|+.-=.+ | -..-|+++..- ...+ .++.+...+..++..+++.+||-=....
T Consensus 228 -kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 305 (415)
T PRK09664 228 -KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLG 305 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777777543222 2 11222222221 1122 2335777788888889999998877778
Q ss_pred HHHHHHhhhhhhcc
Q psy4524 895 VYDIVWNRYLKLRM 908 (929)
Q Consensus 895 ~~~~i~~~~l~~~~ 908 (929)
..|.+... ++.+.
T Consensus 306 L~D~l~D~-~~~~~ 318 (415)
T PRK09664 306 LFDYLADL-FKIDN 318 (415)
T ss_pred HHHHHHHH-hCCCC
Confidence 88888887 55543
|
|
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-15 Score=163.45 Aligned_cols=295 Identities=9% Similarity=0.073 Sum_probs=210.3
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.++++.+..++++.+..|.||+|+|+||.+.++.|+.++++++++++....||..++.|+..+.+ +..++..++|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999986442 3468999999
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+.+ ||.++.+..++..+..++.+.+|+.-.||.+++.++......+.+.-.+++.++.....+. ..+..
T Consensus 81 ~~L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~v 149 (414)
T PRK10483 81 DLL----------GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAV 149 (414)
T ss_pred HHc----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHH
Confidence 776 8999999999999999999999999999999999976322445555555555555555554 33555
Q ss_pred hhHHHHHHHHHHHHHhhhhheeccCCC--CCCCCCC--ccCCCchhHHHHHHHHhhcccccccccccccCCCcccccchh
Q psy4524 755 VPFSSSATGVMFVSLAITMYYILGDFP--SFSDRTP--VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLG 830 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii~~~~~~~~~--~~~~~~~--~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~ 830 (929)
.+++-+-...++..++..+.....+.. ...+.++ ...+.......+++++||+.|.++|++.+.+++.. +|.++
T Consensus 150 d~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~--~kir~ 227 (414)
T PRK10483 150 SRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP--KTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH--HHHHH
Confidence 566654444444333333322222211 1111111 11133466889999999999999999999987532 24445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----------ccccc--ccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHH
Q psy4524 831 VLNVSSAINTTIFAAFGLLAYLKYG-----------DEVQG--SITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYD 897 (929)
Q Consensus 831 v~~~s~~~~~~~Y~~~g~~gY~~fG-----------~~~~~--~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~ 897 (929)
++..+..+..++|+.-=......-+ ++.+. +.+.+..++.+...+..++..+++.+||-=......|
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874443333222 22110 1112222334666778888889999998877778888
Q ss_pred HHHhhhhhhcc
Q psy4524 898 IVWNRYLKLRM 908 (929)
Q Consensus 898 ~i~~~~l~~~~ 908 (929)
.+... ++.+.
T Consensus 308 ~l~D~-~k~~~ 317 (414)
T PRK10483 308 YLADL-FGFDD 317 (414)
T ss_pred HHHHH-hCCCC
Confidence 88887 66543
|
|
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-15 Score=165.03 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=209.9
Q ss_pred CcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q psy4524 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 678 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~ 678 (929)
+.+.+++++.+..+.+|+|+|+||.+.+..|+.++++.+++++..+++|..++.|...+.+ +..+|.+++++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~l- 75 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYL- 75 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh-
Confidence 5678999999999999999999999999999999999999999999999999999986443 3469999999877
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhcccCchhhhhH
Q psy4524 679 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIVPF 757 (929)
Q Consensus 679 ~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 757 (929)
||.++.+..+...+..++.+.+|..-.++.+++.++...+ +.+.+.-.+++.++...+... ..+...+.
T Consensus 76 ---------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~ 145 (394)
T PF03222_consen 76 ---------GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRI 145 (394)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 8999999999999999999999999999999999988654 444444444444333333222 33355555
Q ss_pred HHHHHHHHHHHHhhhhheeccCC--CCCCC-CCCccCCCchhHHHHHHHHhhcccccccccccccCC-CcccccchhHHH
Q psy4524 758 SSSATGVMFVSLAITMYYILGDF--PSFSD-RTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQH-PRQFTARLGVLN 833 (929)
Q Consensus 758 S~~~~~~~~~~~iii~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~-p~~~~~~~~v~~ 833 (929)
+.+-+...+..++........+. +...+ .+...++......+++.++||+.|+++|++.+.+++ ++|.+ +++.
T Consensus 146 n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~---~ai~ 222 (394)
T PF03222_consen 146 NRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIR---KAII 222 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHH---HHHH
Confidence 55555444444433333333221 11111 122345677788999999999999999999999984 34444 4888
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------hccccccc--ccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy4524 834 VSSAINTTIFAAFGLLAYL-----------KYGDEVQG--SITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVW 900 (929)
Q Consensus 834 ~s~~~~~~~Y~~~g~~gY~-----------~fG~~~~~--~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~ 900 (929)
.+..+..++|+..-...-. .-+++..+ ..+.+..++.+...+..++-.+++.+||-=...-.+|.+.
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888765333322 11111111 1334444445778888999999999999888888899998
Q ss_pred hhhhhh
Q psy4524 901 NRYLKL 906 (929)
Q Consensus 901 ~~~l~~ 906 (929)
+. ++.
T Consensus 303 d~-~k~ 307 (394)
T PF03222_consen 303 DL-FKL 307 (394)
T ss_pred HH-HcC
Confidence 88 655
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=168.64 Aligned_cols=283 Identities=12% Similarity=0.074 Sum_probs=205.9
Q ss_pred HHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCcccc
Q psy4524 606 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR 685 (929)
Q Consensus 606 ~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~~~ 685 (929)
++..+++++|+|++++|.++++.|+.++.+.+++.+.++.++...+.|...+. ++..++.+.+++.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-----p~~~~~~~~~~~~~-------- 69 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-----PGGASFNTIAKDLL-------- 69 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHh--------
Confidence 45678999999999999999999999999999999999999999999998543 33468999999887
Q ss_pred cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHHHH
Q psy4524 686 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGV 764 (929)
Q Consensus 686 ~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~ 764 (929)
||++++++.+...+.++..+.+|.+..++.+.++++.... ..+.+...++..+++.++ ..+..+..++++.+.+..
T Consensus 70 --G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~ 146 (381)
T TIGR00837 70 --GKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFG 146 (381)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998876433 344444333334343443 345667888888777766
Q ss_pred HHHHHhhhhheeccCC--CCCCCCCC-ccCCCchhHHHHHHHHhhcccccccccccccCCCcccccchhHHHHHHHHHHH
Q psy4524 765 MFVSLAITMYYILGDF--PSFSDRTP-VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTT 841 (929)
Q Consensus 765 ~~~~~iii~~~~~~~~--~~~~~~~~-~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~ 841 (929)
.+..++........+. .+..+... ...+.++...++...++|++|.+++++.+|+++|+ ||.+|+...+..++++
T Consensus 147 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~--k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 147 KIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV--KKVKKSILIGSAIALV 224 (381)
T ss_pred HHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH--HHHHHHHHHHHHHHHH
Confidence 6554443333222221 11111100 12345666788899999999999999999998553 3444599999999999
Q ss_pred HHHHHHHHHHHhccccccccc-------------ccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhhc
Q psy4524 842 IFAAFGLLAYLKYGDEVQGSI-------------TLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKLR 907 (929)
Q Consensus 842 ~Y~~~g~~gY~~fG~~~~~~i-------------l~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~~ 907 (929)
+|..+........+.+.-.+. ..+.-.+.+...+..++..+++..|+.-.....+|.+.+. ++++
T Consensus 225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-~~~~ 302 (381)
T TIGR00837 225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL-FKFD 302 (381)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 999988777766654321111 1111122356678888888999999999999999998777 5553
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=160.35 Aligned_cols=341 Identities=16% Similarity=0.141 Sum_probs=219.5
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccc
Q psy4524 61 SAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFM 140 (929)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~ 140 (929)
+++++++.++++++ |||+|+||.+.+..|+.++++.+++++.++++|..++.|...+... .
T Consensus 4 ~~~~~~~li~GTaI-----------------GAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~- 64 (394)
T PF03222_consen 4 SILGGVLLIAGTAI-----------------GAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-G- 64 (394)
T ss_pred hHHHHHHHHHHccH-----------------hHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-
Confidence 56788888888888 9999999999999999999999999999999999999999655433 2
Q ss_pred cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy4524 141 SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAV 220 (929)
Q Consensus 141 ~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l 220 (929)
.++.++++.. .| |.++.+.. +...+..++.+++|..-.++.+++.
T Consensus 65 -~~~~~~a~~~------lG---------------------------~~g~~~~~-~~~~~~~y~ll~AYisg~g~~~~~~ 109 (394)
T PF03222_consen 65 -SSLTSMAEKY------LG---------------------------KKGGIVIG-ISYLFLLYALLVAYISGGGSILSSL 109 (394)
T ss_pred -CCHHHHHHHH------hC---------------------------hHHHHHHH-HHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3788877765 21 12223333 3556677889999999999999999
Q ss_pred HHhhcC-CCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeec--cCCC-CCCCCCCCCCcchh
Q psy4524 221 ADQYYG-DHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTD--VPSI-SERNPGGNLKELPL 296 (929)
Q Consensus 221 ~~~~~~-~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~--~~~~-~~~~~~~~~~~~~~ 296 (929)
++...+ +.+.+.-..+..++...+... .-+-....+-+-+...+..++........+ .+.. +..+...++...+.
T Consensus 110 l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~ 188 (394)
T PF03222_consen 110 LGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILP 188 (394)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHH
Confidence 987543 233343333222222211111 111222222222222222222211111111 1110 11122356777888
Q ss_pred hhhHHHhhhccccchhhhhhhcc-CCCCCCcccchhhhHHHHHHHHHHHHHhHHHH-----------hcCCCccc--ccc
Q psy4524 297 FFGTVMFSMSAIGIIMPLENEMR-SPSKFTSKLGVLNVAMLSIALIYTGFGFFGYL-----------KYGPSTSG--SVT 362 (929)
Q Consensus 297 ~~~~~~faf~~~~~~~~i~~eMk-~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~-----------~fG~~v~~--~iL 362 (929)
++++.++||..|.++|++.+.++ |++|.+| ++.++..+..++|++.-...-. .-|+++.+ ..+
T Consensus 189 ~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
T PF03222_consen 189 ALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSAL 265 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHH
Confidence 99999999999999999999998 4566666 6677778888888765332221 11222211 122
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccc-hhHH
Q psy4524 363 LNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPN-LELF 441 (929)
Q Consensus 363 ~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~-~~~v 441 (929)
.+...+.....+..+.-.+++..||-=...-.+|.+.+.+ +. +++. ..|........+..+++|...|+ |-..
T Consensus 266 ~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~-k~--~~~~---~~r~~~~~ltf~ppl~~a~~~p~~F~~a 339 (394)
T PF03222_consen 266 ANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF-KL--KNNS---SGRLKTWLLTFLPPLIFALLFPNGFLIA 339 (394)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC--Cccc---cchHHHHHHHHHhHHHHHHHCcHHHHHH
Confidence 3333344556667888888888888777777888877665 32 2211 12222334445668888998887 7799
Q ss_pred HHHHhhhhhhhhhhcccchhhcccc
Q psy4524 442 ISLIGSLCLPFMAIGLPALLRSTAV 466 (929)
Q Consensus 442 l~lvGa~~~~~l~fi~P~l~~l~~~ 466 (929)
+++.| ...+.+..++|+++..|.|
T Consensus 340 l~~aG-~~~~il~~ilP~~m~~~~r 363 (394)
T PF03222_consen 340 LGYAG-IGIAILLGILPALMVWKAR 363 (394)
T ss_pred HHhhc-HHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999987754
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=158.61 Aligned_cols=344 Identities=14% Similarity=0.089 Sum_probs=218.4
Q ss_pred chhhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhccccc
Q psy4524 58 APFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCL 137 (929)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~ 137 (929)
+|+..+++++-+|+++| |||+|++|.+-+..|++++++++++++...+||..++.|...+..
T Consensus 9 ~~~~~~g~~~iIaGT~I-----------------GaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~- 70 (414)
T PRK10483 9 TSPSLLGGVVIIGGTII-----------------GAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR- 70 (414)
T ss_pred CCCcHHHHHHHHHHchH-----------------hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 57889999999999999 999999999999999999999999999999999999999955432
Q ss_pred ccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhH
Q psy4524 138 PFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNL 217 (929)
Q Consensus 138 ~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l 217 (929)
+.. ++..++|.. .|+ .++. ++.+...+..++.+++|+--.||.+
T Consensus 71 ~g~--~~~tma~~~------LG~---------------------------~g~~-i~~~s~lfl~Y~Ll~AYisg~g~il 114 (414)
T PRK10483 71 IGS--SFDTITKDL------LGK---------------------------GWNV-VNGISIAFVLYILTYAYISASGSIL 114 (414)
T ss_pred CCC--CHHHHHHHH------cCh---------------------------HHHH-HHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 222 566666654 211 2222 3334667778999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCC----CCCCCCCCCCCc
Q psy4524 218 KAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDVPS----ISERNPGGNLKE 293 (929)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~----~~~~~~~~~~~~ 293 (929)
++.+++...+.+.+.-.+++.++.-...+.. .+...+.+-+=+...+...+..+.....+... .........+..
T Consensus 115 ~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~ 193 (414)
T PRK10483 115 HHTFAEMSLNVPARAAGFGFALLVAFVVWLS-TKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPY 193 (414)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHH
Confidence 9998762112234433333333333333321 23333433222222221112111111111100 000111122345
Q ss_pred chhhhhHHHhhhccccchhhhhhhccC-CCCCCcccchhhhHHHHHHHHHHHHHhHHHHh-----------cCCCccc--
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRS-PSKFTSKLGVLNVAMLSIALIYTGFGFFGYLK-----------YGPSTSG-- 359 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~-p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~-----------fG~~v~~-- 359 (929)
...+++++++||+.|.++|++.+.+++ ++|.+| ++..+..+-.++|++.=...-.. -|++++.
T Consensus 194 ~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~ 270 (414)
T PRK10483 194 LLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLV 270 (414)
T ss_pred HHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHH
Confidence 678899999999999999999999885 455555 77888888888888743332222 2222211
Q ss_pred ccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccc-h
Q psy4524 360 SVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPN-L 438 (929)
Q Consensus 360 ~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~-~ 438 (929)
+.+.+..++.....+..+.-.+++..||-=...-.+|.+.+.+ +.+ ++. ..|........+..+++|...|+ |
T Consensus 271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~-k~~--~~~---~~r~~~~~ltflPPl~~al~~P~~F 344 (414)
T PRK10483 271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF-GFD--DSA---MGRFKTALLTFLPPVVGGLLFPNGF 344 (414)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--Ccc---ccceeeehhhHhhHHHHHHHhHHHH
Confidence 1111111233444566777777888888766777788877665 211 111 11222333456789999999998 8
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhcccc
Q psy4524 439 ELFISLIGSLCLPFMAIGLPALLRSTAV 466 (929)
Q Consensus 439 ~~vl~lvGa~~~~~l~fi~P~l~~l~~~ 466 (929)
=..++..|.. ++.+.-++|+++..+.|
T Consensus 345 l~AL~yAG~~-~~il~~ilP~lM~~~~R 371 (414)
T PRK10483 345 LYAIGYAGLA-ATIWAAIVPALLARASR 371 (414)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8899999976 66667799999987755
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-14 Score=155.90 Aligned_cols=287 Identities=13% Similarity=0.091 Sum_probs=203.1
Q ss_pred cchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhcc
Q psy4524 600 LVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE 679 (929)
Q Consensus 600 ~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~ 679 (929)
.+..++++.+..|.+|+|+|+||.+....|++++++++++++.+..|+.+++.|+..+ .++..++.+++++.+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~-----~~~~~~~~~~a~~~L-- 75 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH-----VPADTGLGTLAKRYL-- 75 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHh--
Confidence 3788999999999999999999999999999999999999999999999999997532 234468999999877
Q ss_pred CCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhcccCchhhhhHH
Q psy4524 680 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIVPFS 758 (929)
Q Consensus 680 ~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S 758 (929)
||.++++..+...+..+..+.+|..-.|+.+.+.++++.+ +.+.....+++.++.....+. ..+...+.+
T Consensus 76 --------G~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n 146 (403)
T PRK15132 76 --------GRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFN 146 (403)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 8999999999999999999999999999999999877544 344444444444433323332 335555555
Q ss_pred HHHHHHHHHHHhhhhheeccCC--CCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcccccchhHHHHHH
Q psy4524 759 SSATGVMFVSLAITMYYILGDF--PSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSS 836 (929)
Q Consensus 759 ~~~~~~~~~~~iii~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~ 836 (929)
-+-+...++.++....+...+. .+..+.++ +.......++++.+||+.|.++|++.+.+++.. +|.+|+...+.
T Consensus 147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~--~~~~k~i~~Gs 222 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI--RKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH--HHHHHHHHHHH
Confidence 4444333333322222222111 11111111 112367899999999999999999999987532 34445999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-----ccc-----cccccc---CCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhh
Q psy4524 837 AINTTIFAAFGLLAYLKYGDE-----VQG-----SITLNL---PQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRY 903 (929)
Q Consensus 837 ~~~~~~Y~~~g~~gY~~fG~~-----~~~-----~il~n~---~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~ 903 (929)
.+..++|+..=......-+.+ .++ +++..+ .++.+...+..++..+++.+||-=......|.+...
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~- 301 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADL- 301 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999998887666665544332 111 122222 234577778888888899999887778888888888
Q ss_pred hhhc
Q psy4524 904 LKLR 907 (929)
Q Consensus 904 l~~~ 907 (929)
++++
T Consensus 302 ~~~~ 305 (403)
T PRK15132 302 FQRR 305 (403)
T ss_pred HccC
Confidence 6544
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=155.30 Aligned_cols=342 Identities=14% Similarity=0.112 Sum_probs=215.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccc
Q psy4524 59 PFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLP 138 (929)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~ 138 (929)
++.++++++.++++++ |||+|+||.+.+..|++++++++++++.+.+|+.+++.|+..+. ++
T Consensus 2 ~~~~~g~~~li~GTaI-----------------GAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-~~ 63 (403)
T PRK15132 2 KNRTLGSIFIVAGTTI-----------------GAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-PA 63 (403)
T ss_pred CccHHHHHHHHHhcch-----------------hHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 3467888899999998 99999999999999999999999999999999999999974433 22
Q ss_pred cccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy4524 139 FMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLK 218 (929)
Q Consensus 139 ~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~ 218 (929)
.. ++.+++|.. .| +.++.+.. +...+..+..+++|..-.|+.++
T Consensus 64 ~~--~~~~~a~~~------LG---------------------------~~g~~i~~-~~y~fl~y~ll~AYisg~g~il~ 107 (403)
T PRK15132 64 DT--GLGTLAKRY------LG---------------------------RYGQWLTG-FSMMFLMYALTAAYISGAGELLA 107 (403)
T ss_pred CC--CHHHHHHHH------hC---------------------------hHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHH
Confidence 22 566666654 21 22233333 35667788999999999999988
Q ss_pred HHHHhhcC-CCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeecc--CCCCCCCCCCCCCcch
Q psy4524 219 AVADQYYG-DHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTDV--PSISERNPGGNLKELP 295 (929)
Q Consensus 219 ~l~~~~~~-~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~--~~~~~~~~~~~~~~~~ 295 (929)
..++++.+ +.+.....+++.++.....+. ..+...+..-+=+...+...+........+. ....+.+ .+..-..
T Consensus 108 ~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~--~~~~~~~ 184 (403)
T PRK15132 108 SSISDWTGISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTLP--LQQGLAL 184 (403)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCC--ccccHHH
Confidence 88876433 223332222222222111111 1123333322211111111111111111111 0000111 1112377
Q ss_pred hhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCc-----cc-----ccccc
Q psy4524 296 LFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPST-----SG-----SVTLN 364 (929)
Q Consensus 296 ~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v-----~~-----~iL~~ 364 (929)
.+++++++||+.|+++|++.+.+++. +|.+| ++..+..+-.++|++.=......-+++. ++ +++..
T Consensus 185 ~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~ 261 (403)
T PRK15132 185 SAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQA 261 (403)
T ss_pred HHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHH
Confidence 88999999999999999999998754 55666 6677888888888776555554444331 11 22222
Q ss_pred cC---CCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccc-hhH
Q psy4524 365 LP---AGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPN-LEL 440 (929)
Q Consensus 365 ~~---~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~-~~~ 440 (929)
+. ++.+...++.....+++..||-=...-..|.+.+.+ +++.+. ..|........+..+++|..-|+ |..
T Consensus 262 l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~-~~~~~~-----~~r~~~~~l~flppli~a~~~P~~F~~ 335 (403)
T PRK15132 262 LREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF-QRRNTV-----GGRLQTGLITFLPPLAFALFYPRGFVM 335 (403)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCccc-----cCCchhehhhHHHHHHHHHHhHHHHHH
Confidence 21 234555666777777888888767777788877665 221111 11334455567789999999997 788
Q ss_pred HHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 441 FISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 441 vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
.+++.|. ..+.+.+++|+++-.|.|+
T Consensus 336 al~~aG~-~~ail~~ilP~~m~~~~r~ 361 (403)
T PRK15132 336 ALGYAGV-ALAVLALLLPSLLVWQSRK 361 (403)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 9999886 5788889999999877553
|
|
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-13 Score=150.27 Aligned_cols=342 Identities=16% Similarity=0.101 Sum_probs=210.9
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccc
Q psy4524 61 SAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFM 140 (929)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~ 140 (929)
.+++++.-+|++++ |||+|+||.+-+..|+++++++++++++..+||..++.|...+.. +..
T Consensus 10 ~~~gg~~iIaGT~I-----------------GAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-~g~ 71 (415)
T PRK09664 10 SAFWGVMVIAGTVI-----------------GGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-VGS 71 (415)
T ss_pred chhhhhHHhhhccH-----------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 57778888999998 999999999999999999999999999999999999999954442 222
Q ss_pred cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy4524 141 SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAV 220 (929)
Q Consensus 141 ~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l 220 (929)
++..++|.. .| +.++.+. .+...+..++.+++|+--.|+.+++.
T Consensus 72 --~l~tma~~~-------------------------------LG--~~g~~i~-~~~~~fl~Y~Ll~AYisggG~il~~~ 115 (415)
T PRK09664 72 --SFNTITKDL-------------------------------IG--NTWNIIS-GITVAFVLYILTYAYISANGAIISET 115 (415)
T ss_pred --CHHHHHHHH-------------------------------cC--hHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 566666654 21 1223333 34666778899999999999999999
Q ss_pred HHhhcC-CCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeec--cCCCCCCCCCC----CCCc
Q psy4524 221 ADQYYG-DHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTD--VPSISERNPGG----NLKE 293 (929)
Q Consensus 221 ~~~~~~-~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~--~~~~~~~~~~~----~~~~ 293 (929)
++...+ +.+.+.-.++++++.-+..+..+ +...+.+-+=+...+.+.+..+.....+ .+...+.+... .+..
T Consensus 116 l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~ 194 (415)
T PRK09664 116 ISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPY 194 (415)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHH
Confidence 875322 22333333333333333333222 3333333222221111111111111111 00000111111 1224
Q ss_pred chhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHH--HhHH---------HHhcCCCccccc
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGF--GFFG---------YLKYGPSTSGSV 361 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~--g~~g---------Y~~fG~~v~~~i 361 (929)
...+++++++||+.|+++|++.+.+++. ++.+| .+.....+-.++|++- .+.| -..-|++++.-+
T Consensus 195 i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~ 271 (415)
T PRK09664 195 IFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV 271 (415)
T ss_pred HHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH
Confidence 6678999999999999999999998754 55566 4456666666666433 2222 112233333311
Q ss_pred cc--ccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHHccc-h
Q psy4524 362 TL--NLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPN-L 438 (929)
Q Consensus 362 L~--~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~-~ 438 (929)
.. .-.++.+...+..+...+++..||-=...-..|.+.+.+ +.+.+ . ..|.....+..+..+++|.+-|+ |
T Consensus 272 ~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~-~~~~~--~---~~r~~~~~ltflPPl~~al~~P~gF 345 (415)
T PRK09664 272 KSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLF-KIDNS--H---GGRFKTVLLTFLPPALLYLIFPNGF 345 (415)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCc--c---ccceeeehhhHhhhHHHHHHhhHHH
Confidence 11 112234555667777778888888766777788877665 22111 1 11222333456788999999998 8
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 439 ELFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 439 ~~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
=..++..|.. ++.+.-++|+++-.|.|+
T Consensus 346 l~AL~yAG~~-~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 346 IYGIGGAGLC-ATIWAVIIPAVLAIKARK 373 (415)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 8899999996 667777999999877653
|
|
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=134.47 Aligned_cols=339 Identities=13% Similarity=0.106 Sum_probs=206.7
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhhh
Q psy4524 90 TVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKN 169 (929)
Q Consensus 90 ~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (929)
.+|||+|+||-.....|..+.++++++...+++|+...|.|...+..++.. ++.|+++.. .|+++
T Consensus 32 AIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~--~i~~v~~~~------lG~~g------- 96 (443)
T PRK13629 32 AIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSG--NITETVEEH------FGKTG------- 96 (443)
T ss_pred HHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CHHHHHHHH------cChhH-------
Confidence 459999999999999999999999999999999999999998554434433 788887765 22222
Q ss_pred hhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcC--CCChhHHHHHHHHHHHHhhcc
Q psy4524 170 ILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYG--DHDIRFYMLLIFFPILLLCWI 247 (929)
Q Consensus 170 ~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~pL~~~ 247 (929)
+.+.. +..++..+..+.+|...+.+.+++.+.+..+ +.++.+..++..+.+......
T Consensus 97 --------------------~~i~~-ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~ 155 (443)
T PRK13629 97 --------------------GVVIT-FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWF 155 (443)
T ss_pred --------------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHh
Confidence 22222 3555666777888998888888876655433 223333333333333322222
Q ss_pred cCCChhhHHHHHHHHHHHHHHhheeEEEeec-----cCCCCC-C-CCCCC---CCcchhhhhHHHhhhccccchhhhhhh
Q psy4524 248 RNLKLLAPFSTLATAITIASFGITLYYVFTD-----VPSISE-R-NPGGN---LKELPLFFGTVMFSMSAIGIIMPLENE 317 (929)
Q Consensus 248 r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~-----~~~~~~-~-~~~~~---~~~~~~~~~~~~faf~~~~~~~~i~~e 317 (929)
.+ +.+-+++-+=+.-.+...+....+...+ ..+.+. . +...+ ......++++.+|||.-|+++|++...
T Consensus 156 G~-~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y 234 (443)
T PRK13629 156 GK-DLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVS 234 (443)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 22 3333333222222111112111111111 110000 0 00001 123667889999999999999999888
Q ss_pred ccCC-C-----C--CCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCc-----cccc--cc----ccCCC--------Ch
Q psy4524 318 MRSP-S-----K--FTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPST-----SGSV--TL----NLPAG--------DL 370 (929)
Q Consensus 318 Mk~p-~-----~--~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v-----~~~i--L~----~~~~~--------~~ 370 (929)
+|+. + + -+|..+++..+..+-.++|+..-+..-..-+++- ++|+ +. .++.. ..
T Consensus 235 ~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~ 314 (443)
T PRK13629 235 KREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAIT 314 (443)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhH
Confidence 4333 1 2 3444447788888888888877666666555431 1221 21 12221 23
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhh---hccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhh
Q psy4524 371 LAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLK---THMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGS 447 (929)
Q Consensus 371 ~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa 447 (929)
...+..+...+++..||-=...-.+|.+...+.+ +..+++...+..+.....++.+.++++|..-|++=.++.-+|+
T Consensus 315 i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~g 394 (443)
T PRK13629 315 LEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGA 394 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhh
Confidence 4445566666678888766667788887666532 2222211123345566777888999999999999999997777
Q ss_pred hhhhhhhhcccchhhccc
Q psy4524 448 LCLPFMAIGLPALLRSTA 465 (929)
Q Consensus 448 ~~~~~l~fi~P~l~~l~~ 465 (929)
-..+.+.|++|.....|.
T Consensus 395 Piia~il~l~P~y~i~kv 412 (443)
T PRK13629 395 PIIASLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 777788889999877553
|
|
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=137.89 Aligned_cols=284 Identities=15% Similarity=0.117 Sum_probs=204.2
Q ss_pred HHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCcccc
Q psy4524 606 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR 685 (929)
Q Consensus 606 ~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~~~ 685 (929)
.+.+..+.+|+|+|++|....+.||...++..++...+++++..++.|.... .+.+..++.|++++.|
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~----~~~p~~~i~~~~~~~f-------- 76 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS----SKNPCEDITEVVEEHF-------- 76 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHc--------
Confidence 5788999999999999999999999999999999999999999999988532 2223579999999888
Q ss_pred cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHHHH
Q psy4524 686 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGV 764 (929)
Q Consensus 686 ~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~ 764 (929)
||+++.+..+...+..+..+.+|....++.+.+.+..... +.+.+....+..+...-.......+.+.+++.+-+..
T Consensus 77 --Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~ 154 (397)
T TIGR00814 77 --GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFP 154 (397)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999888876543 3334433333333333444455778888888777765
Q ss_pred HHHHHhhhhheeccCC--CCCCCCCCc-cCCCchhHHHHHHHHhhcccccccccc----cccCCCc-ccccchhHHHHHH
Q psy4524 765 MFVSLAITMYYILGDF--PSFSDRTPV-GHLSDLPLFVGVTLFSLSSIGVTMPLE----NEMQHPR-QFTARLGVLNVSS 836 (929)
Q Consensus 765 ~~~~~iii~~~~~~~~--~~~~~~~~~-~~~~~~~~~~g~~~faf~~h~~i~~i~----~~m~~p~-~~~~~~~v~~~s~ 836 (929)
.+..++....+...+. .+....++. ..+.++....++.++||.+|+++|+.. +|.++|+ +.+|.+++...+.
T Consensus 155 ~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~ 234 (397)
T TIGR00814 155 LVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGAS 234 (397)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 5555544444433221 111112211 123457789999999999999999997 3344332 1244555899999
Q ss_pred HHHHHHHHHHHHHHHHhccccc-----ccc--ccc---ccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhh
Q psy4524 837 AINTTIFAAFGLLAYLKYGDEV-----QGS--ITL---NLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYL 904 (929)
Q Consensus 837 ~~~~~~Y~~~g~~gY~~fG~~~-----~~~--il~---n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l 904 (929)
.+..++|...-.......+.+. ++| .+. |-.++.....+..+.-.+++..|+-=...-.+|.+... +
T Consensus 235 ~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l-~ 311 (397)
T TIGR00814 235 LILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI-V 311 (397)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 9999998888877777766442 122 121 11223466677778888888899888888899999888 5
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-11 Score=132.91 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=194.9
Q ss_pred HHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCccccc
Q psy4524 607 SHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRW 686 (929)
Q Consensus 607 ~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~~~~ 686 (929)
..+..+.+|+|+|+||-.....|+.+.+++++++..+++++...+.|...+. +++..++.+++++.|
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~----~~~~~~i~~v~~~~l--------- 92 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG----SNPSGNITETVEEHF--------- 92 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCHHHHHHHHc---------
Confidence 8899999999999999999999999999999999999999999999987532 234568999999887
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHHHH
Q psy4524 687 LAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG--VTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGV 764 (929)
Q Consensus 687 ~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~ 764 (929)
||.++.+..+...+..+..+.+|...+.+.+.+.+.+..+ ..++....+++...+....... -+.+-+++-+-+..
T Consensus 93 -G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 93 -GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWP 170 (443)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999888876555433 2343333344444444333333 35555555544444
Q ss_pred HHHHHhhhhheeccCC--CCCCCCC-----CccCC---CchhHHHHHHHHhhcccccccccccccCCC-c-----c--cc
Q psy4524 765 MFVSLAITMYYILGDF--PSFSDRT-----PVGHL---SDLPLFVGVTLFSLSSIGVTMPLENEMQHP-R-----Q--FT 826 (929)
Q Consensus 765 ~~~~~iii~~~~~~~~--~~~~~~~-----~~~~~---~~~~~~~g~~~faf~~h~~i~~i~~~m~~p-~-----~--~~ 826 (929)
.+..++....+.+.+- +...+.+ ...+. ......+++++|||+.|+++|++...+|+. + + -+
T Consensus 171 ~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~ 250 (443)
T PRK13629 171 FIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTER 250 (443)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHH
Confidence 4444433333333221 1111111 11111 125668899999999999999998874322 1 2 35
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccc-----cccc--cc---c-cCCC--------ChHHHHHHHHHHHHHHHH
Q psy4524 827 ARLGVLNVSSAINTTIFAAFGLLAYLKYGDEV-----QGSI--TL---N-LPQE--------DTLAVSVKLLLSVSILFT 887 (929)
Q Consensus 827 ~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-----~~~i--l~---n-~~~~--------~~~~~i~~~~~~i~l~~s 887 (929)
|.++++..+..+..++|+..-+..-..-+++. ++|+ +. | ++++ .....+..++..+++..|
T Consensus 251 k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TS 330 (443)
T PRK13629 251 KCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKS 330 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHH
Confidence 55669999999999998888777776665431 2232 21 1 2221 235666777777788888
Q ss_pred hccchhHHHHHHHhhhh
Q psy4524 888 FALPHFIVYDIVWNRYL 904 (929)
Q Consensus 888 yPL~~~p~~~~i~~~~l 904 (929)
|-=...-.+|.+... +
T Consensus 331 FlGv~LGl~E~l~gl-~ 346 (443)
T PRK13629 331 FFGHYLGTLEGLNGL-I 346 (443)
T ss_pred HHHHHHHHHHHHHHH-H
Confidence 877777888888887 5
|
|
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=130.59 Aligned_cols=340 Identities=15% Similarity=0.102 Sum_probs=210.3
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhhh
Q psy4524 90 TVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKN 169 (929)
Q Consensus 90 ~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (929)
++|||+|++|...++.||++.++..++...++.++..++.|.......+.. ++.|+.+.. .
T Consensus 16 ~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~--~i~~~~~~~------f----------- 76 (397)
T TIGR00814 16 AIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCE--DITEVVEEH------F----------- 76 (397)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHH------c-----------
Confidence 349999999999999999999999999999999999988888333322233 677776664 1
Q ss_pred hhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcC-CCChhHHHHHHHHHHHHhhccc
Q psy4524 170 ILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYG-DHDIRFYMLLIFFPILLLCWIR 248 (929)
Q Consensus 170 ~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~pL~~~r 248 (929)
||+++.++. ...++..+..+.+|....++.+.+...+... +...+....+..+..+-.....
T Consensus 77 ----------------Gk~~G~ii~-~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~ 139 (397)
T TIGR00814 77 ----------------GKNWGILIT-LLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSF 139 (397)
T ss_pred ----------------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 122233333 2455566777888998888888888766432 2334433332222222233334
Q ss_pred CCChhhHHHHHHHHHHHHHHhheeEEEeecc--CCCCCCCC-CCCCCcchhhhhHHHhhhccccchhhhh----hhccCC
Q psy4524 249 NLKLLAPFSTLATAITIASFGITLYYVFTDV--PSISERNP-GGNLKELPLFFGTVMFSMSAIGIIMPLE----NEMRSP 321 (929)
Q Consensus 249 ~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~----~eMk~p 321 (929)
..+.+..++-+-+...+..++........+. ......+. ...+.+...+++..++||.+|.++++.. +|.+||
T Consensus 140 G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~ 219 (397)
T TIGR00814 140 GEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDK 219 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCc
Confidence 5566666555544333333333222222111 10111111 1123567889999999999999999997 444433
Q ss_pred C-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCc-----cc--cccccc---CCCChHHHHHHHHHHHHHHHHhccc
Q psy4524 322 S-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPST-----SG--SVTLNL---PAGDLLAQSVKVMLALAIFCTFALP 390 (929)
Q Consensus 322 ~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v-----~~--~iL~~~---~~~~~~~~i~~~~~~i~l~~s~pl~ 390 (929)
+ +.+|..+++..+..+..++|+..-+..-...+++. ++ +++..+ .++.....+......+++..||-=+
T Consensus 220 ~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~ 299 (397)
T TIGR00814 220 EFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGH 299 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333347778888888888777766666666442 11 122211 1233455556667777888888777
Q ss_pred hhHHHHHHHHhhhh--hccccChhhhHHHHHHHHHHHHHHHHHHHHccchhHHHHHHhhhhhhhhhhcccchhhccc
Q psy4524 391 QYIVYNIVWNCYLK--THMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALLRSTA 465 (929)
Q Consensus 391 ~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~~ 465 (929)
..-.+|.+...+.+ ++.+++..++..+.....++.+.++++|..-|++=.++.-+|+-..+.+.|++|...-.|.
T Consensus 300 ~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 300 YLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 78888887765532 1111211223344566677788999999999999999987777777778889999887553
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=115.26 Aligned_cols=286 Identities=12% Similarity=0.126 Sum_probs=187.4
Q ss_pred CCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Q psy4524 598 KPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 677 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f 677 (929)
+|.|.+|..+.+..+++|+|++.+|....+.+-.-+.+..++.++.......++.+..++. ++ .+..|..++.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-----p~-~~~~~~~~~~~ 74 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-----PE-KNFSEILSKYL 74 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-----CC-CCHHHHHHHHh
Confidence 3678999999999999999999999987764444566677888888888888888887432 22 37888888877
Q ss_pred ccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhH
Q psy4524 678 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPF 757 (929)
Q Consensus 678 ~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 757 (929)
||+...++......+.+..+.......+|.++...-. + ++.+...+..+...-....+.++..+++
T Consensus 75 ----------Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~-tp~~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 75 ----------GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLP---R-TPIIVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 7888888888777777766665555566665443221 2 2333333444444445556788998888
Q ss_pred HHHHHHHHHHHH-hhhhheeccCCCCCCCCCCc--cCCCchhH-HHHHHHHhhcccccccccccccCCCcccccchhHHH
Q psy4524 758 SSSATGVMFVSL-AITMYYILGDFPSFSDRTPV--GHLSDLPL-FVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLN 833 (929)
Q Consensus 758 S~~~~~~~~~~~-iii~~~~~~~~~~~~~~~~~--~~~~~~~~-~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~ 833 (929)
+.+-....+... +++......+ .+.++..+. .++.+... ......++|.+.........++|||++.+| ...
T Consensus 141 ~~i~~~~~i~~~~~il~~~~~~~-~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~ 216 (359)
T TIGR00912 141 AEILLIIFLILFILVLILLAPKL-GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKK---SII 216 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHH---HHH
Confidence 887776665542 3332222221 122222221 22233323 223567899888888888889999887666 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccc-------cccCCC---ChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhh
Q psy4524 834 VSSAINTTIFAAFGLLAYLKYGDEVQGSIT-------LNLPQE---DTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRY 903 (929)
Q Consensus 834 ~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il-------~n~~~~---~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~ 903 (929)
.+..++..+|....+.....+|.+..++.. +...-. +..-.+.-.......+...-+.++.....+.+.
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~- 295 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL- 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999989999865433211 111100 112233334455666777778888888888887
Q ss_pred hhhcc
Q psy4524 904 LKLRM 908 (929)
Q Consensus 904 l~~~~ 908 (929)
++.+.
T Consensus 296 ~~~~~ 300 (359)
T TIGR00912 296 FKKRK 300 (359)
T ss_pred hCCCC
Confidence 55443
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >KOG3832|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=90.11 Aligned_cols=213 Identities=14% Similarity=0.180 Sum_probs=140.7
Q ss_pred CcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hc-CCCCCC
Q psy4524 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCR---------RK-RIPSLT 668 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~---------~~-~~~~~s 668 (929)
..|..-....+.|-++|+|.|+||.||+.+||.+++.++.+.+++++.+....+++...... .+ +.+..+
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 44566677889999999999999999999999999999999999999999999887643211 00 000011
Q ss_pred -----------------------------------------HHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhH
Q psy4524 669 -----------------------------------------YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGAL 707 (929)
Q Consensus 669 -----------------------------------------y~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~ 707 (929)
.++++... +.|.+-.+..++++++++|..
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmf----------fnkvgln~fyf~iiiylfgdl 160 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMF----------FNKVGLNFFYFAIIIYLFGDL 160 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHH----------HHhhhHHHHHHHHHHHHhhhh
Confidence 12333333 367788888889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcC-----------------CCc--------hHHHHHHHHHHH-HhhhcccCchhhhhHHHHH
Q psy4524 708 CVYLLFIASNLSQVCVRFWG-----------------VTD--------LRLYMLVLFPPL-LLISWVPNLKYIVPFSSSA 761 (929)
Q Consensus 708 ~~y~i~~~~~l~~l~~~~~~-----------------~~~--------~~~~~~i~~~~~-~pl~~~~~l~~l~~~S~~~ 761 (929)
..|--.+--..-++.....+ .|. .|+++.++.+++ +|+.+. ++.+-+.+..+.
T Consensus 161 aiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqilt 239 (319)
T KOG3832|consen 161 AIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILT 239 (319)
T ss_pred hhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHH
Confidence 88876665555555443322 111 234555555444 566664 555556666666
Q ss_pred HHHHHHHHhhhhheeccCCC--CCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCC
Q psy4524 762 TGVMFVSLAITMYYILGDFP--SFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHP 822 (929)
Q Consensus 762 ~~~~~~~~iii~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p 822 (929)
...-....+........+.. .....|+....-++-..++...|+|.+|.+.|.....++.+
T Consensus 240 slmrw~~~~~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 240 SLMRWAAFILGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred HHHHHHhccchhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 66555544433322211111 11223333456678888999999999999999998888754
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=100.82 Aligned_cols=237 Identities=9% Similarity=-0.036 Sum_probs=138.0
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
++++.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|..... +..-......++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~-----P~~GG~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS-----RKSGGMGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCCchHHHHHH
Confidence 45789999999999999999999999999988876 466777777777777777666655322 222233344444
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHH--HHHHHHhhhcccCchh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLV--LFPPLLLISWVPNLKY 753 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l~~ 753 (929)
.+ |+...++......+.......++.....+.+..+++. ..+.....++ ..+.+.-....+..+.
T Consensus 78 ~~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~~~~~~~~~~~~~~l~~~~~ln~~g~~~ 144 (438)
T PRK10655 78 AF----------GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---TLSPVQICLATIGVLWLCTVANFGGARI 144 (438)
T ss_pred Hc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 44 6767777777655544443344333334444444432 1122211111 1112222233445566
Q ss_pred hhhHHHHHHHHHHHHHhhhhhee--ccCCCCCCCCCCccC---CCchhHHHHHHHHhhcccccccccccccCCCcccccc
Q psy4524 754 IVPFSSSATGVMFVSLAITMYYI--LGDFPSFSDRTPVGH---LSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTAR 828 (929)
Q Consensus 754 l~~~S~~~~~~~~~~~iii~~~~--~~~~~~~~~~~~~~~---~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~ 828 (929)
.+++..+.+...+..++++.... ..+..+..+...... +.++...+....|+|.|-.....+.+|+|||+| ..
T Consensus 145 ~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r--~i 222 (438)
T PRK10655 145 TGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER--NV 222 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc--cc
Confidence 66665544443322221111110 111111111000111 123445566789999999999999999999973 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy4524 829 LGVLNVSSAINTTIFAAFGLLAYLK 853 (929)
Q Consensus 829 ~~v~~~s~~~~~~~Y~~~g~~gY~~ 853 (929)
+|++..+..++.++|.+........
T Consensus 223 PrAi~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 223 PIAVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4499999999999999877655433
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-06 Score=100.96 Aligned_cols=283 Identities=10% Similarity=-0.015 Sum_probs=167.8
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKD-SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~-~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
+|+.|.++.++..+++++|+|++.+|..... .|. ..++..++.++........+.|...+.+ +.-...+..++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p-----~~Gg~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLP-----VAGSPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcceeeHHH
Confidence 4678999999999999999999999966554 443 3455566667777777777777764332 21233334444
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHH-----------HHHHHHHHHHh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRL-----------YMLVLFPPLLL 744 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~-----------~~~i~~~~~~p 744 (929)
.+ ||+..++......+.....+..+....++.+..+++......+... +..+....+.-
T Consensus 76 ~~----------G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (429)
T TIGR00909 76 AM----------GELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLT 145 (429)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHH
Confidence 44 7888888888777777666777777778877777653211111110 11222223333
Q ss_pred hhcccCchhhhhHHHHHHHHHHHHHhhhhheecc--CCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCC
Q psy4524 745 ISWVPNLKYIVPFSSSATGVMFVSLAITMYYILG--DFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHP 822 (929)
Q Consensus 745 l~~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p 822 (929)
....+..+...+++.+.....+..++.+...... +.++.++.. ..++.++...+....|+|.|.+......+|+|||
T Consensus 146 ~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p 224 (429)
T TIGR00909 146 YILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP 224 (429)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence 3445567777777776665544333322211111 111222111 1223455667778999999999999999999999
Q ss_pred cc-cccchhHHHHHHHHHHHHHHHHHHHHHHhcccc-c-cc-c----cccccCCCChHHHHHHHHHHHHHHHHhccchhH
Q psy4524 823 RQ-FTARLGVLNVSSAINTTIFAAFGLLAYLKYGDE-V-QG-S----ITLNLPQEDTLAVSVKLLLSVSILFTFALPHFI 894 (929)
Q Consensus 823 ~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~-~~-~----il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p 894 (929)
+| .+| ++..+..++.++|.............+ . ++ + +..+.. .++...+..+...++.+.+.--....
T Consensus 225 ~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (429)
T TIGR00909 225 ERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYG 300 (429)
T ss_pred cccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 444 999999999999999876655332211 0 00 1 111111 13444555566666666555444444
Q ss_pred HHHHHH
Q psy4524 895 VYDIVW 900 (929)
Q Consensus 895 ~~~~i~ 900 (929)
..+.+.
T Consensus 301 ~sR~~~ 306 (429)
T TIGR00909 301 TSRVLF 306 (429)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-06 Score=97.89 Aligned_cols=283 Identities=13% Similarity=0.142 Sum_probs=193.5
Q ss_pred CcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q psy4524 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 678 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~ 678 (929)
|.|..|....+..+++|+|++.+|....+.+ .-|.+..++.+........+..+..++. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~------p~~~l~~~~~~~~- 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF------PGKTLVEISEKLF- 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHh-
Confidence 5688999999999999999999999876554 1344455556666666666666665332 2348899998776
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHH
Q psy4524 679 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFS 758 (929)
Q Consensus 679 ~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S 758 (929)
||+...++.....++.+......+...+|.+....-. ..+.+.+.+...+..-..-.+.++.+++.+
T Consensus 73 ---------Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 ---------GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP----ETPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8988899999888888888887777777777665433 344555555555666777788999999977
Q ss_pred HHHHHHHHHHHhhhhheeccCCCCCCCCCCc--cCCCchhHHHHHHHHhhcccccccccccccCCCcccccchhHHHHHH
Q psy4524 759 SSATGVMFVSLAITMYYILGDFPSFSDRTPV--GHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSS 836 (929)
Q Consensus 759 ~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~ 836 (929)
.+-....+...+.+......+. ++++..+. .++.+.....-...+.|.+-....-+...+++|++.+| ....+.
T Consensus 140 ~~~~~~~~i~~~~i~~~~~~~~-~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k---~~~~~~ 215 (320)
T PF03845_consen 140 EILFPIFLILLLLILLLSIPNI-DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKK---SLLIAI 215 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH---HHHHHH
Confidence 7777666666555554444432 33333322 33445555656677888888778778888898887666 888999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccc---cc----CCC---ChHHHHHHHHHHHHHHHHhccchhHHHHHHHhhhhhh
Q psy4524 837 AINTTIFAAFGLLAYLKYGDEVQGSITL---NL----PQE---DTLAVSVKLLLSVSILFTFALPHFIVYDIVWNRYLKL 906 (929)
Q Consensus 837 ~~~~~~Y~~~g~~gY~~fG~~~~~~il~---n~----~~~---~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~~l~~ 906 (929)
.....+|...-+.....||.+..++... +. +-. +.+-.+.-...........-+.++-..+.+.+. ++.
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~-f~~ 294 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL-FKL 294 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 9999999998888999999754333211 11 000 112223333445566677778888888888887 544
Q ss_pred c
Q psy4524 907 R 907 (929)
Q Consensus 907 ~ 907 (929)
+
T Consensus 295 ~ 295 (320)
T PF03845_consen 295 K 295 (320)
T ss_pred C
Confidence 3
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-06 Score=98.65 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=132.8
Q ss_pred chHHHHHHHHhhhhhhhhchhHHHHh-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhcc
Q psy4524 601 VYWDALSHMIKGALGTGILTMPHAFK-DSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE 679 (929)
Q Consensus 601 s~~~a~~~l~~s~iG~GiLsLP~af~-~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~ 679 (929)
+.++++...+++++|+|++.+|-... .+|- ..+...++.++........+.|...+.+ +.-.....+++.+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P-----~aGG~y~y~~~~~-- 73 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFP-----HAGGPAHFVGMAF-- 73 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHhHHHHh--
Confidence 67899999999999999999996544 5553 4677777777777777777777765433 2224444555555
Q ss_pred CCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHHH
Q psy4524 680 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSS 759 (929)
Q Consensus 680 ~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~ 759 (929)
|+...++..............+......+.+..+++. .........+....++-....+..|..++++.
T Consensus 74 --------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 74 --------GPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---SSWQLLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred --------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666666665554432222223333333444433322 11112222222222233334556666666665
Q ss_pred HHHHHHHHHHhhhhheeccCCCCCCCC-CCccCCCchhHHHHHHHHhhcccccccccccccCCCcc-cccchhHHHHHHH
Q psy4524 760 SATGVMFVSLAITMYYILGDFPSFSDR-TPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ-FTARLGVLNVSSA 837 (929)
Q Consensus 760 ~~~~~~~~~~iii~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~-~~~~~~v~~~s~~ 837 (929)
+..+..+..+.........+..+.+.. ....++.++...+....|+|.|........+|+|||+| .+| ++..+..
T Consensus 143 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~ 219 (410)
T PRK11021 143 VIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLL 219 (410)
T ss_pred HHHHHHHHHHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHH
Confidence 544333222222111111111111000 01123455667788899999999999999999999963 455 9999999
Q ss_pred HHHHHHHHHHHH
Q psy4524 838 INTTIFAAFGLL 849 (929)
Q Consensus 838 ~~~~~Y~~~g~~ 849 (929)
.+.++|.+....
T Consensus 220 ~~~~lYil~~~~ 231 (410)
T PRK11021 220 LAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=100.85 Aligned_cols=238 Identities=9% Similarity=0.011 Sum_probs=135.1
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .+...++.++.+........|.... .++.-...+.++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-----~P~~GG~y~y~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATK-----NPQQGGPIAYAG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCCChhHHHH
Confidence 4567899999999999999999999999999987753 4555555566555555555555432 222223333344
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+ + |+...+.+.............++.+...+.+..+++...+.... ....+..+.+.-....+..+..
T Consensus 76 ~-~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~-~~~~~~i~~~~~~ln~~gvk~~ 143 (435)
T PRK10435 76 E-I----------SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPA-GIACIAIVWVFTFVNMLGGTWV 143 (435)
T ss_pred H-H----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 3 4 55555665554333232233334344445554444322111111 1111111112222334555666
Q ss_pred hhHHHHHHHHHHHHHhhhhheec--cCC----CCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCc-cccc
Q psy4524 755 VPFSSSATGVMFVSLAITMYYIL--GDF----PSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPR-QFTA 827 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii~~~~~--~~~----~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~-~~~~ 827 (929)
+.++.+.....++.++....... .+. +++++ +...++.++...+....|+|.|-+.+....+|+|||+ +.+|
T Consensus 144 ~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr 222 (435)
T PRK10435 144 SRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL 222 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH
Confidence 66655444433322221111111 011 11111 1112234566677889999999999999999999996 4566
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
++..+...+.++|...........
T Consensus 223 ---Ai~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 223 ---ATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999887665444
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-06 Score=105.73 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=159.7
Q ss_pred cCCcccccCCCcchHHHHHHH-Hhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4524 589 AGNLKAVSKKPLVYWDALSHM-IKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPS 666 (929)
Q Consensus 589 ~~~~~~~~~~~~s~~~a~~~l-~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~ 666 (929)
++.+.+.+.++.+++++++.- +.+++|+|++ .+++.+.++|...+++..+++++++..|..-+.+.+... ..+..
T Consensus 67 ~~~~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng---~p~aG 143 (953)
T TIGR00930 67 TKEKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNG---VVKGG 143 (953)
T ss_pred ccCCCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcc
Confidence 344444567889999999988 9999999998 566888899988888999999999999988887776310 00111
Q ss_pred CCHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-----CC-chHHHHHHHHH
Q psy4524 667 LTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-----VT-DLRLYMLVLFP 740 (929)
Q Consensus 667 ~sy~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-----~~-~~~~~~~i~~~ 740 (929)
-.|.-+. ++ +|+.....+.+...+.....+..|.+..++.+..+++.... .. +.+.+.+++.+
T Consensus 144 G~Y~yis-ra----------lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ 212 (953)
T TIGR00930 144 GAYYLIS-RS----------LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVV 212 (953)
T ss_pred HHHHHHH-HH----------hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHH
Confidence 2454443 33 37777777777777777777888888888888887754211 11 12232222333
Q ss_pred HHHhhhcccCchhhhhHHHHHHHHHHHHHhhhhheeccCCCC-------------CCC--CCCccCC-CchhHHHHHHHH
Q psy4524 741 PLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILGDFPS-------------FSD--RTPVGHL-SDLPLFVGVTLF 804 (929)
Q Consensus 741 ~~~pl~~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~~~-------------~~~--~~~~~~~-~~~~~~~g~~~f 804 (929)
++..+ .....+..+++..+.++..+++++.++...+....+ ..+ .+.+.+. .++...++++.+
T Consensus 213 ll~~I-n~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~ 291 (953)
T TIGR00930 213 VLLGI-SFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFP 291 (953)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHH
Confidence 32333 344667777777665555444433333322211000 000 0111111 226677888888
Q ss_pred hhcccccccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q psy4524 805 SLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLA 850 (929)
Q Consensus 805 af~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~g 850 (929)
||.|......+-.|+|||+| .+++.+..+..+++++|+++.+..
T Consensus 292 A~tGi~agan~sgElKnP~r--~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 292 SVTGILAGANISGDLKDPQK--AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred HHHHHHHHHHHHHhccChhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 344599999999999999997643
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-06 Score=97.99 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=142.6
Q ss_pred ccccCCCcchHHHHHHHHhhhhhhhhchhH-HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy4524 593 KAVSKKPLVYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPE 671 (929)
Q Consensus 593 ~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP-~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~ 671 (929)
.++.+|+.+.++..+..+++++|+|++.+| .+.+++|-. +++..++.+++.......+.|..... ++.-+..+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~-----P~~Gg~~~ 80 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVAN-----PDTGSFST 80 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCHHH
Confidence 344678899999999999999999999999 778888864 67777777777777766666666432 23335666
Q ss_pred HHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCc
Q psy4524 672 ILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNL 751 (929)
Q Consensus 672 l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 751 (929)
.+++.+ |++..++......+.....+.+.....++.+....+ ..+...+ .+....+.-....+..
T Consensus 81 ~~~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~-~~~~~~~~~~~n~~gv 145 (452)
T TIGR01773 81 YADDAI----------GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----DIPLWLF-SLILTIVLTLTNLYSV 145 (452)
T ss_pred HHHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCcHHHH-HHHHHHHHHHHHHHhc
Confidence 666665 788888888777766666666666666666554433 2222222 2222222222233445
Q ss_pred hhhhhHHHHHHHHHH---HHHhhhhh-eeccCCCC-----CCCC---C-C-ccCCCchhHHHHHHHHhhccccccccccc
Q psy4524 752 KYIVPFSSSATGVMF---VSLAITMY-YILGDFPS-----FSDR---T-P-VGHLSDLPLFVGVTLFSLSSIGVTMPLEN 817 (929)
Q Consensus 752 ~~l~~~S~~~~~~~~---~~~iii~~-~~~~~~~~-----~~~~---~-~-~~~~~~~~~~~g~~~faf~~h~~i~~i~~ 817 (929)
+..+++.......-+ +.+++... ......+. ..+. . + +..+.++...+....|+|.|........+
T Consensus 146 ~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~ 225 (452)
T TIGR01773 146 KSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAA 225 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHH
Confidence 555555443332211 11111111 00111010 1110 0 1 11123466677789999999999999999
Q ss_pred ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy4524 818 EMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAY 851 (929)
Q Consensus 818 ~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 851 (929)
|+|||+| ..++++..+......+|........
T Consensus 226 E~k~P~r--~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 226 ESSNPIK--SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred hhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999973 3334877778888888887655443
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-06 Score=97.18 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=141.8
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYL-LGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~-~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
+++.|.+++++..+++++|+|++.+|....+.|-. ..++..++.++..........|...+.+++ .-...+..++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~----sGG~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL----DGGIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHHh
Confidence 57899999999999999999999999988765522 234456666666666666666665332210 2233334455
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHH-HHHHHHHHHhhhcccCchhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLY-MLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~-~~i~~~~~~pl~~~~~l~~l 754 (929)
++ ||+..++..............++.....+.+..+++..........+ ..+....+.-....+..+..
T Consensus 82 ~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 82 GF----------GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred Hc----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 55 67777777776655554445555555566666665532111111111 11222222333445677777
Q ss_pred hhHHHHHHHHHHHHHhhh---hheeccCCCCCC----CC--CC-ccCCCchhHHHHHHHHhhcccccccccccccCCCcc
Q psy4524 755 VPFSSSATGVMFVSLAIT---MYYILGDFPSFS----DR--TP-VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ 824 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii---~~~~~~~~~~~~----~~--~~-~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~ 824 (929)
+++..+.....+...+.+ ..... +.++.. +. +. ...+.++........|+|.|-.......+|+||+++
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 777766554433222111 11111 111111 11 10 011233445666789999999999999999999444
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 825 FTARLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 825 ~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
.+| .+..+..++.++|.+.........
T Consensus 231 iPr---ai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 231 VGK---ATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred chH---HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 555 999999999999998877654433
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=98.66 Aligned_cols=241 Identities=9% Similarity=0.020 Sum_probs=134.1
Q ss_pred ccccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 593 KAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 593 ~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
+.+.+|+.+.++.+...+++++|+|++.+|....+.|.. .+...++.++........+.|.....+ +.-...+-
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P-----~aGG~y~~ 76 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDP-----SPGGSYAY 76 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCChhHH
Confidence 344667899999999999999999999999988887642 444555555555555555555553322 21122233
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHH--HHHHHHHhhhcccC
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYML--VLFPPLLLISWVPN 750 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~ 750 (929)
+++++ |+...++......+.......+......+....+.+.. .+.....+ +..+..+-....+.
T Consensus 77 ~~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~g 143 (445)
T PRK10644 77 ARRCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPLVLTITCVVVLWIFVLLNIVG 143 (445)
T ss_pred HHHHc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcHHHHHHHHHHHHHHHHHHHhc
Confidence 44444 67777776665554443333333333334444333321 11111111 11111222223445
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhheec--cCCCCCCCCCCc---cCCCchhHHHHHHHHhhcccccccccccccCCCccc
Q psy4524 751 LKYIVPFSSSATGVMFVSLAITMYYIL--GDFPSFSDRTPV---GHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQF 825 (929)
Q Consensus 751 l~~l~~~S~~~~~~~~~~~iii~~~~~--~~~~~~~~~~~~---~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~ 825 (929)
.|...++..+.....++.+........ .+.++..+.... .++.++...+....|+|.|-.......+|+|||+|
T Consensus 144 vk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r- 222 (445)
T PRK10644 144 PKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR- 222 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-
Confidence 566666665554433222221111110 111111111011 11223444566789999999999999999999973
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 826 TARLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 826 ~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
..++++..+..++.++|.+..+.....-
T Consensus 223 -~iPrai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 223 -NVPIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2334999999999999999887754433
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=94.79 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=136.8
Q ss_pred cccCCCcchHHHHHHHHhhhhhhhhchhH-HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 594 AVSKKPLVYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 594 ~~~~~~~s~~~a~~~l~~s~iG~GiLsLP-~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
++.+|+.+.++.....++++||+|++-.| .+++++|. ..+...++++++......-+.|... ..+...++.+.
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s-----~~~~~~~~~~y 89 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLL-----SNLEYKSFSDF 89 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCCcHHHH
Confidence 34678899999999999999999999877 57888887 3555666667766666655555442 22333356667
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCch
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLK 752 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 752 (929)
+++.+ |+...+++.....+...-...+.....+..+....+ ......+.++...+ +-.......+
T Consensus 90 a~~~~----------g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~~~~~~~~~~~~~~-~~~iN~~g~~ 154 (469)
T PRK11049 90 ASDLL----------GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP----DLSDWVASLAVVLL-LLSLNLATVK 154 (469)
T ss_pred HHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHH-HHHHHHHhHH
Confidence 77666 788888888877766543444444445554443332 22222222222222 2222334555
Q ss_pred hhhhHHHHHHHHH---HHHHhhhhhe---eccCCCC-----CCC----CCC-ccCCCchhHHHHHHHHhhcccccccccc
Q psy4524 753 YIVPFSSSATGVM---FVSLAITMYY---ILGDFPS-----FSD----RTP-VGHLSDLPLFVGVTLFSLSSIGVTMPLE 816 (929)
Q Consensus 753 ~l~~~S~~~~~~~---~~~~iii~~~---~~~~~~~-----~~~----~~~-~~~~~~~~~~~g~~~faf~~h~~i~~i~ 816 (929)
..++++.+....- ++.+++.... ...+.++ ..+ ..+ +..+.++...+....|+|.|-..+....
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a 234 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTA 234 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 5555554433322 1111111111 0001111 111 011 1123346677888999999999999999
Q ss_pred cccCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy4524 817 NEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAY 851 (929)
Q Consensus 817 ~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 851 (929)
+|+|||+| ..++++..+...+.++|.+......
T Consensus 235 ~E~knP~r--~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 235 AETKDPEK--SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHhcCHhh--HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 99999974 3334777667777778876665544
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=94.76 Aligned_cols=283 Identities=12% Similarity=0.057 Sum_probs=155.3
Q ss_pred CCcchHHHHHHHHhhhhhhhhchhHHHHh-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTGILTMPHAFK-DSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSL-TYPEILGA 675 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiLsLP~af~-~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~-sy~~l~~~ 675 (929)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|..... ++.. ...+.+++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~-----P~~gGG~y~y~~~ 75 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK-----PELDGGVYSYAKA 75 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCCChhhhHHh
Confidence 47789999999999999999999998755 44533334456666666666665556655322 2211 33444555
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHH-HHHHHHHHhhhcccCchhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYM-LVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l 754 (929)
.| |+...++......+.......++.....+.+...++......+...+. .+..+..+-....+..+..
T Consensus 76 ~f----------G~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~ 145 (468)
T TIGR03810 76 GF----------GPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGA 145 (468)
T ss_pred Hc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 55 777777777766555444445555555555544443321111111111 1222222222334667776
Q ss_pred hhHHHHHHHHHHHH---HhhhhheeccCC---CC-CCCCC-Cc---cCCCchhHHHHHHHHhhcccccccccccccCCCc
Q psy4524 755 VPFSSSATGVMFVS---LAITMYYILGDF---PS-FSDRT-PV---GHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPR 823 (929)
Q Consensus 755 ~~~S~~~~~~~~~~---~iii~~~~~~~~---~~-~~~~~-~~---~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~ 823 (929)
++++.+....-+.. +++......... ++ +++.+ .+ ..+.++...+....|+|.|-+....+.+|.||++
T Consensus 146 ~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k 225 (468)
T TIGR03810 146 AFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRS 225 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcc
Confidence 66666544432211 111111111110 00 11110 00 1112344566778999999999999999999877
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhccccc----ccc----cccccCCCChHHHHHHHHHHHHHHHHhccchhHH
Q psy4524 824 QFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEV----QGS----ITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895 (929)
Q Consensus 824 ~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~----~~~----il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~ 895 (929)
+.+| .+..+...+.++|..+.+..+...+++. ++. +..+.-. ++...+..+...++.+.+.--.....
T Consensus 226 ~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 226 DVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred cchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 9999999999999998887665544321 111 1111111 24445555556666555544444444
Q ss_pred HHHH
Q psy4524 896 YDIV 899 (929)
Q Consensus 896 ~~~i 899 (929)
-+.+
T Consensus 302 sR~~ 305 (468)
T TIGR03810 302 AEIP 305 (468)
T ss_pred HHHH
Confidence 3333
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=94.16 Aligned_cols=238 Identities=11% Similarity=0.005 Sum_probs=133.7
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhchhHHH-HhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGILTMPHA-FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiLsLP~a-f~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.+|+.+.++.....+++++|+|++..|-. .+.+|-...++..++.+++......-+.|.....+ ..-.+....+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P-----~aGG~y~y~~ 86 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMP-----ETGAFHVYAA 86 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHHH
Confidence 46789999999999999999999988855 56777543466677777777777777777664332 2234555666
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+++ |+...+++.....+.....+.+.....+..+... .+......+.++..++ +-....+..|..
T Consensus 87 ~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~-~~~in~~gvk~~ 151 (471)
T PRK11387 87 RYL----------GPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYW----FPQVPVWPWCLLFCAL-IFGLNVVSTRFF 151 (471)
T ss_pred Hhc----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcCcHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 555 6777777776666555444433333333333222 2222222222222222 222233455555
Q ss_pred hhHHHHHHHHH---HHHHhhhh-hee---c-c-C-C--CCCCC---CCCc-cCCCchhHHHHHHHHhhcccccccccccc
Q psy4524 755 VPFSSSATGVM---FVSLAITM-YYI---L-G-D-F--PSFSD---RTPV-GHLSDLPLFVGVTLFSLSSIGVTMPLENE 818 (929)
Q Consensus 755 ~~~S~~~~~~~---~~~~iii~-~~~---~-~-~-~--~~~~~---~~~~-~~~~~~~~~~g~~~faf~~h~~i~~i~~~ 818 (929)
++.+......- +..+++.. ... . . + . +..++ ..+. ....++...+....|+|.|-..+....+|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 54443222211 11111111 000 0 0 0 0 00011 0110 11123445556689999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4524 819 MQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYG 855 (929)
Q Consensus 819 m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 855 (929)
+|||+| ..++++..+...+.++|.......-....
T Consensus 232 ~knP~r--~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 232 TENPAK--VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred hcChhh--HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999974 34448889999889999888765444333
|
|
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=95.23 Aligned_cols=242 Identities=12% Similarity=0.068 Sum_probs=145.0
Q ss_pred cccCCCcchHHHHHHHHhhhhhhhhchhHHHH--hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy4524 594 AVSKKPLVYWDALSHMIKGALGTGILTMPHAF--KDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPE 671 (929)
Q Consensus 594 ~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af--~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~ 671 (929)
++.+|+.+.++.+..-+..++|+|++.+|-.. +.+|-. .++..++.++.+........|.....++. ...|.-
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~s----Gg~Y~y 98 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKA----GSAYLY 98 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----Ccceee
Confidence 34578899999999999999999999999643 356754 45566667777777666666666443321 112322
Q ss_pred HHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC------------CC-chHHHHHHH
Q psy4524 672 ILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG------------VT-DLRLYMLVL 738 (929)
Q Consensus 672 l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~------------~~-~~~~~~~i~ 738 (929)
. ++++ |+...+++.....+.....+.+.....++.+..++....+ .. .......+.
T Consensus 99 ~-~~~~----------G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 167 (557)
T TIGR00906 99 S-YVTV----------GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVC 167 (557)
T ss_pred H-HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHH
Confidence 2 2333 7777788887777666555555555555555555432110 00 001112222
Q ss_pred HHHHHhhhcccCchhhhhHHHHHHHHHHHHHhhhhheec--cCCCCCC-----CCCCc--cCCCchhHHHHHHHHhhccc
Q psy4524 739 FPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYIL--GDFPSFS-----DRTPV--GHLSDLPLFVGVTLFSLSSI 809 (929)
Q Consensus 739 ~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~--~~~~~~~-----~~~~~--~~~~~~~~~~g~~~faf~~h 809 (929)
.+.++-....+..+..++++.+....-+..++++..... .+..++. +..++ ..+.++........|+|.|-
T Consensus 168 ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gf 247 (557)
T TIGR00906 168 LILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGF 247 (557)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhH
Confidence 222222334567777777776655544333222222211 1111221 00011 12335566777899999999
Q ss_pred ccccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy4524 810 GVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLK 853 (929)
Q Consensus 810 ~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~ 853 (929)
..+....+|+|||+| ..++.+..+..+++++|..+.+.-...
T Consensus 248 d~v~~~aeE~knP~r--~iP~aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 248 DAIATTGEEVKNPQR--AIPIGIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred HHHHHhHHhccCccc--cccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999974 334499999999999999887665433
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=92.76 Aligned_cols=234 Identities=13% Similarity=0.028 Sum_probs=137.8
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+.+.++..+..+.+++|+|++..|- +.+++|- ..++..++.+++......-+.|...+. +..-+..+.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~-----P~~Gg~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEE-----PVSGSFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHH
Confidence 45678899999999999999999998885 5556675 366777777887777777777766433 2334566666
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
++.+ |+...+++.....+.......+.....+..++.+. +......+.++... +.-....++.+.
T Consensus 92 ~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~-l~~~lN~~gv~~ 156 (458)
T PRK10249 92 YKYW----------GPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF----PDVPTWIWAAAFFI-IINAVNLVNVRL 156 (458)
T ss_pred HHHh----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcCcHHHHHHHHHH-HHHHHHHhcchh
Confidence 6665 77777777776665554444444444444444332 22222222222222 222223345555
Q ss_pred hhhHHHHHHHH---HHHHH---hhhhheeccCCC--CCCCC---C--CccCCCchhHHHHHHHHhhcccccccccccccC
Q psy4524 754 IVPFSSSATGV---MFVSL---AITMYYILGDFP--SFSDR---T--PVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQ 820 (929)
Q Consensus 754 l~~~S~~~~~~---~~~~~---iii~~~~~~~~~--~~~~~---~--~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~ 820 (929)
.+++..+.... .++.+ .+.........+ +.++. . .+..+.++...+....|+|.|-..+....+|+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 55443322211 11111 111111111111 11110 0 112344556778889999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy4524 821 HPRQFTARLGVLNVSSAINTTIFAAFGLLAY 851 (929)
Q Consensus 821 ~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 851 (929)
||+| ..++++..+...+.++|........
T Consensus 237 ~P~k--~iPrai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 237 DPEK--SIPKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred CHhh--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9974 3445888899889999977544433
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-05 Score=91.15 Aligned_cols=232 Identities=12% Similarity=0.074 Sum_probs=137.7
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
+.+|+.|.++.....+..++|....+.+.++++.|+..-+...++.++........+.|.....+ +.-.....++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P-----~~Gg~y~~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIP-----TAGGGYGFAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHHH
Confidence 35678899999999999999855566788999999864444555555555555555666664332 2224444555
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+.+ |+...++......+.......++....++.+..+++. .....+.++... ++-....+..+..
T Consensus 79 ~~~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~~~~~~~~~~~~-~~~~ln~~g~~~~ 143 (442)
T TIGR00908 79 RAF----------GPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV----GPGWLAALVFYI-VFIGINILGVGEA 143 (442)
T ss_pred HHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHH-HHHHHHHHHHHHH
Confidence 555 7877888887777766666667777777777666543 222222222222 2223334455666
Q ss_pred hhHHHHHHHHHHHHHhhhhheecc--CCCC-----CCCCCCc--cCCCchhHHHHHHHHhhcccccccccccccCCCcc-
Q psy4524 755 VPFSSSATGVMFVSLAITMYYILG--DFPS-----FSDRTPV--GHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ- 824 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii~~~~~~--~~~~-----~~~~~~~--~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~- 824 (929)
++++.+.....++.+++....... +..+ +.+...+ ..+.++...+....|+|.|........+|+|||+|
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ 223 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRD 223 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 666554443333222222111111 1000 0010101 11123455666788999999999999999999964
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q psy4524 825 FTARLGVLNVSSAINTTIFAAFGLL 849 (929)
Q Consensus 825 ~~~~~~v~~~s~~~~~~~Y~~~g~~ 849 (929)
.+| ++..+..++..+|...-..
T Consensus 224 ipr---ai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 224 IPR---GLIGAILTLLALAAGILVV 245 (442)
T ss_pred cCH---HHHHHHHHHHHHHHHHHHH
Confidence 455 8888888888888776443
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=92.59 Aligned_cols=280 Identities=13% Similarity=0.073 Sum_probs=171.8
Q ss_pred chHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhcc
Q psy4524 601 VYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT-TSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE 679 (929)
Q Consensus 601 s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~ 679 (929)
|+++++...+++++|+|+...| ...+.|.. .++..++.+.+. ........|... ..++.-....-.++++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~-----~~p~~GG~y~~~~~~~-- 72 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSS-----AYPSAGGIYVWVSRAF-- 72 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHT-----TTTSSTTHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCcCeeeehhhhcc--
Confidence 6889999999999999999999 77777765 555555554544 455555555542 2333345556666666
Q ss_pred CCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHhhhcccCchhhhhHH
Q psy4524 680 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTD-LRLYMLVLFPPLLLISWVPNLKYIVPFS 758 (929)
Q Consensus 680 ~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~S 758 (929)
||+..++......+.......++.....+.+...+....+..+ ......+..+...-....+..|..++++
T Consensus 73 --------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 73 --------GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred --------cccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhh
Confidence 7888888888888877777777777777777665543111111 1122222233334444455667777776
Q ss_pred HHHHHHHH-HHHhhh---hheecc-CCCC---C-CCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcccccch
Q psy4524 759 SSATGVMF-VSLAIT---MYYILG-DFPS---F-SDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARL 829 (929)
Q Consensus 759 ~~~~~~~~-~~~iii---~~~~~~-~~~~---~-~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~ 829 (929)
.+.....+ ..+++. ...... +..+ . .+......+.+....+....|+|.|-.......+|+|| |+.+|
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~-- 221 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR-- 221 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH--
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhhee--
Confidence 65554444 222111 111111 1111 0 11122233455677888899999999999999999887 55666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccc---ccc---c----cccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy4524 830 GVLNVSSAINTTIFAAFGLLAYLKYGDEVQ---GSI---T----LNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIV 899 (929)
Q Consensus 830 ~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~---~~i---l----~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i 899 (929)
.+..+..++.++|......-....+++.. ++. . +... .++...+..+...+..+.+..-.+....+.+
T Consensus 222 -ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 299 (426)
T PF13520_consen 222 -AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLL 299 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcc
Confidence 99999999999999998877766655321 111 0 1111 1356666667777777777776666666666
Q ss_pred Hhh
Q psy4524 900 WNR 902 (929)
Q Consensus 900 ~~~ 902 (929)
+..
T Consensus 300 ~~~ 302 (426)
T PF13520_consen 300 YAM 302 (426)
T ss_dssp HHH
T ss_pred ccc
Confidence 655
|
... |
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-05 Score=86.58 Aligned_cols=233 Identities=10% Similarity=0.068 Sum_probs=134.2
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHH-HhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHA-FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~a-f~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+.+.++..+..+.+++|+|++.+|.. .+.+|- ..++..++.++........+.|...+.+ ..-...+.+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P-----~~Gg~y~y~ 79 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNP-----AASSFSRYA 79 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHH
Confidence 355779999999999999999999999865 556665 3577777778877877777777764332 223444455
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
++.+ ||...+++.....+.....+.+.....+..+.... +......+.++..+ +.-....+..|.
T Consensus 80 ~~~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-l~~~ln~~gv~~ 144 (457)
T PRK10580 80 QENL----------GPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF----PTVPHWIWVLSVVL-IICAVNLMSVKV 144 (457)
T ss_pred HHHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCChHHHHHHHHH-HHHHHHHccchh
Confidence 5554 77777887776665554444443344444443332 22233333222222 222233345555
Q ss_pred hhhHHHHHHHHHHH---HHhh----hhheeccC--CC-C----CCCCC-CccCCCchhHHHHHHHHhhcccccccccccc
Q psy4524 754 IVPFSSSATGVMFV---SLAI----TMYYILGD--FP-S----FSDRT-PVGHLSDLPLFVGVTLFSLSSIGVTMPLENE 818 (929)
Q Consensus 754 l~~~S~~~~~~~~~---~~ii----i~~~~~~~--~~-~----~~~~~-~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~ 818 (929)
.+.+..+.....+. .+++ +......+ .+ + +++.. +...+.++...+....|+|.|........+|
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 55544332222111 1110 11111111 11 0 11101 1112234556677789999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q psy4524 819 MQHPRQFTARLGVLNVSSAINTTIFAAFGLLA 850 (929)
Q Consensus 819 m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~g 850 (929)
+|||+| ..++++..+...+.++|.......
T Consensus 225 ~knP~k--~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 225 AKDPEK--SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred hcChhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 333477777777778887765443
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-05 Score=87.98 Aligned_cols=284 Identities=8% Similarity=0.034 Sum_probs=156.6
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhH-HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP-~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+.+.++..+..+.++||+|++..| .+.+.+|- ..++..++.+++.+....-+.|..... +..-++.+.+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-----P~sGg~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-----PVTGSFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence 3557899999999999999999999877 56777776 355666777777777777777766432 3334667777
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
++.+ |+...+++.....+.......+.....+..++... +......+..+..+++.. ...+..+.
T Consensus 81 ~~~~----------g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~----p~~~~~~~~~~~~~~~~~-lN~~gv~~ 145 (461)
T PRK10746 81 HRYM----------SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF----PEMAQWIPALIAVALVAL-ANLAAVRL 145 (461)
T ss_pred HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCchHHHHHHHHHHHHH-HHHHhHHH
Confidence 7666 67777777776666655555555555555544332 223333333332222222 22233344
Q ss_pred hhhHHHH----HHHHHH--HHHhh-hhheecc-CC-----CCCCCCC-C-ccCCCchhHHHHHHHHhhcccccccccccc
Q psy4524 754 IVPFSSS----ATGVMF--VSLAI-TMYYILG-DF-----PSFSDRT-P-VGHLSDLPLFVGVTLFSLSSIGVTMPLENE 818 (929)
Q Consensus 754 l~~~S~~----~~~~~~--~~~ii-i~~~~~~-~~-----~~~~~~~-~-~~~~~~~~~~~g~~~faf~~h~~i~~i~~~ 818 (929)
.+.+... -+..++ +.+.+ +...... +. .++.+.. . ...+.++...+....|+|.+-..+....+|
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3333222 111111 11111 1111111 10 0111111 1 122445667888899999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc----cc---ccccCCCChHHHHHHHHHHHHHHHHhccc
Q psy4524 819 MQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQG----SI---TLNLPQEDTLAVSVKLLLSVSILFTFALP 891 (929)
Q Consensus 819 m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~----~i---l~n~~~~~~~~~i~~~~~~i~l~~syPL~ 891 (929)
+|||+| .+++++..+...+.++|.......-.....+..+ .. ..+... .....+.++...++.+.+.--.
T Consensus 226 ~knP~k--~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 226 AKNPQV--TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred hcChhh--HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999973 3444888888888888887654443333222111 10 011111 1233344555555555554444
Q ss_pred hhHHHHHHHhh
Q psy4524 892 HFIVYDIVWNR 902 (929)
Q Consensus 892 ~~p~~~~i~~~ 902 (929)
++...+.+...
T Consensus 303 ~~~~sR~l~~~ 313 (461)
T PRK10746 303 MYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.3e-05 Score=87.28 Aligned_cols=239 Identities=11% Similarity=-0.013 Sum_probs=126.9
Q ss_pred cccCCCcchHHHHHHHHhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 594 AVSKKPLVYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 594 ~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
++.+|+.+.++..+..+.++||+|++.+|- +.+++|-...++..++.++++...+..+.|.....+ +.-.....
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P-----~sGg~y~y 85 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMP-----VSGSFATY 85 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHH
Confidence 345678999999999999999999999995 677778644577788888888888777777774433 22344444
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCch
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLK 752 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 752 (929)
+++.+ |+...+++.....+..... .+.-....+. +.+.+.+......+..+..+++. .......+
T Consensus 86 ~~~~~----------g~~~gf~~Gw~~~~~~~~~-~a~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~-~lN~~gv~ 150 (489)
T PRK10836 86 GQNYV----------EEGFGFALGWNYWYNWAVT-IAVDLVAAQL---VMSWWFPDTPGWIWSALFLGVIF-LLNYISVR 150 (489)
T ss_pred HHHHc----------ChHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HhhhcCCCCchHHHHHHHHHHHH-HHHHHcch
Confidence 44443 4555555555444332222 2211122221 12222222222222222222221 12222333
Q ss_pred hhhhHHHH------HHHHHHHHHhhhhheec-cCCC-----CCCCC--CCccCCCchhHHHHHHHHhhcccccccccccc
Q psy4524 753 YIVPFSSS------ATGVMFVSLAITMYYIL-GDFP-----SFSDR--TPVGHLSDLPLFVGVTLFSLSSIGVTMPLENE 818 (929)
Q Consensus 753 ~l~~~S~~------~~~~~~~~~iii~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~ 818 (929)
..+....+ ..+..++.+.+...... .+.+ ++++. +....+.++........|+|.|-..+....+|
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33332221 11111111111111111 1111 11110 01111112223344467999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 819 MQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 819 m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
+|||+| ..++++..+...+.++|......-....
T Consensus 231 ~knP~r--~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 231 SEDPAK--NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred hcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 999974 3445888999999999998866544433
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.1e-05 Score=87.78 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=130.8
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.+|+.+.++..+..+.++||+|++..|. +.+++|- .+++..++.+++....+.-+.|.... .+..-+...-++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-----~P~aGg~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-----RPSSGSFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCCHHHHHH
Confidence 4577899999999999999999998886 6777775 46677777777777777777666633 233345566666
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+.+ |++..+++.....+.............+..+.. .+.+ +......+.+++.+ +.-....+..|..
T Consensus 100 ~~~----------G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~~~~~~~~-l~~~iN~~gvk~~ 166 (499)
T PRK15049 100 EFL----------GEKAAYVAGWMYFINWAMTGIVDITAVALYMHY-WGAF-GGVPQWVFALAALT-IVGTMNMIGVKWF 166 (499)
T ss_pred HHh----------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC-CCCcHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 665 666667777666554433333222223332221 1111 11222222222222 2222233445555
Q ss_pred hhHHHHHHHH---HHHHHhhhhhee-ccCCCC---CCCCC-Ccc----CCCch---hHHHHHHHHhhccccccccccccc
Q psy4524 755 VPFSSSATGV---MFVSLAITMYYI-LGDFPS---FSDRT-PVG----HLSDL---PLFVGVTLFSLSSIGVTMPLENEM 819 (929)
Q Consensus 755 ~~~S~~~~~~---~~~~~iii~~~~-~~~~~~---~~~~~-~~~----~~~~~---~~~~g~~~faf~~h~~i~~i~~~m 819 (929)
.++..+.... .++.++++.... ....+. ..... ... ..+++ ...+....|+|.|-..+....+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 5544433321 111111111111 111110 00000 000 01222 233456899999999999999999
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 820 QHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 820 ~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
|||+| ..+|++..+...+.++|+..........
T Consensus 247 knP~r--~iPrAi~~~~~~i~~~yi~~~~~~~~~~ 279 (499)
T PRK15049 247 KDPQT--MVPKAINSVIWRIGLFYVGSVVLLVMLL 279 (499)
T ss_pred cChhh--HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 99974 3444888888888888887666544443
|
|
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=92.45 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=133.8
Q ss_pred cccccCCCcchHHHHHHHHhhhhhhhhchhHHH-HhhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH
Q psy4524 592 LKAVSKKPLVYWDALSHMIKGALGTGILTMPHA-FKDSGYL-LGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTY 669 (929)
Q Consensus 592 ~~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~a-f~~~G~~-~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy 669 (929)
++++.+|+.+.++.+...+++++|+|++..|.. .+++|-. ..++..++.+++.......+.|.....+ +.-..
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P-----~sGG~ 110 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIP-----KSGGE 110 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCch
Confidence 334567789999999999999999999999865 5556632 1223445666666666666666664332 11122
Q ss_pred HHHHHHHhccCCcccccccchhHHHHHHHHHH-HHhhhHHHHHHHHHHHHH-HHHhhhcCCCchH--HHHHHHHHHHHhh
Q psy4524 670 PEILGAALSEGPARFRWLAPYGRGLSFTAMIV-DEIGALCVYLLFIASNLS-QVCVRFWGVTDLR--LYMLVLFPPLLLI 745 (929)
Q Consensus 670 ~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i-~~~g~~~~y~i~~~~~l~-~l~~~~~~~~~~~--~~~~i~~~~~~pl 745 (929)
..-.++.+ |+...++....... ...+.+..+....++.+. .+.+.. ..+.. ..+.+..+.+.-.
T Consensus 111 y~~~~~~~----------g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--~~~~~~~~~i~~~~i~~~~~ 178 (501)
T TIGR00911 111 YNYILEVF----------GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC--EVPEWAIRLVAVLCVLLLTL 178 (501)
T ss_pred hhhHHhHh----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHHHHHH
Confidence 23333344 66666655543322 112333334344444432 222211 11111 1111222222333
Q ss_pred hcccCchhhhhHHHHHHHHHHHHHhh---hhheec-cCCC-CCCCCCCc----cCCCchhHHHHHHHHhhcccccccccc
Q psy4524 746 SWVPNLKYIVPFSSSATGVMFVSLAI---TMYYIL-GDFP-SFSDRTPV----GHLSDLPLFVGVTLFSLSSIGVTMPLE 816 (929)
Q Consensus 746 ~~~~~l~~l~~~S~~~~~~~~~~~ii---i~~~~~-~~~~-~~~~~~~~----~~~~~~~~~~g~~~faf~~h~~i~~i~ 816 (929)
...+..+...+++.+.....+..++. ...... .+.+ +.+....+ .+..++...+....|+|.|-.....+.
T Consensus 179 ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a 258 (501)
T TIGR00911 179 VNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVT 258 (501)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhH
Confidence 33456667666666555443322211 111111 1111 11111111 122345567778999999999999999
Q ss_pred cccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4524 817 NEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKY 854 (929)
Q Consensus 817 ~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 854 (929)
+|+|||+| ..++++..+..++.++|.+..+.-....
T Consensus 259 ~E~knP~r--~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 259 EEVKNPYR--TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHhcCchh--hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999963 3344999999999999999866554433
|
|
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-05 Score=87.12 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=133.5
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHH-HhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHA-FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~a-f~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+.+.++..+..++++||+|++..|-. .+++|- ..++..++.++.......-+.|.... .+..-++.+-+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-----~P~aGg~y~~~ 82 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-----EPVAGSFSHFA 82 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCHHHHH
Confidence 356889999999999999999999988855 555564 45555666666666666666665532 23334555556
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
++.+ ||...++......+.....+.+.....++.++...+ ..+...+.++...+.. .......|.
T Consensus 83 ~~~~----------g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~i~~~~~~-~lN~~gv~~ 147 (456)
T PRK10238 83 YKYW----------GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----EIPTWVSAAVFFVVIN-AINLTNVKV 147 (456)
T ss_pred HHHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHH-HHHHHhHHH
Confidence 5554 788888888888877777777776666666654433 2233333332222222 222234444
Q ss_pred hhhHHHHHHHHHH---HHHhh-hhh--eeccCCCC--CCC---CC-C-ccCCCchhHHHHHHHHhhcccccccccccccC
Q psy4524 754 IVPFSSSATGVMF---VSLAI-TMY--YILGDFPS--FSD---RT-P-VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQ 820 (929)
Q Consensus 754 l~~~S~~~~~~~~---~~~ii-i~~--~~~~~~~~--~~~---~~-~-~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~ 820 (929)
.+.++.+....-+ +.+++ .+. ......+. ..+ .. + +..+.++...++...|+|.|-.......+|+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 4444443322221 11111 111 11111111 111 00 1 11122344566778999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHH
Q psy4524 821 HPRQFTARLGVLNVSSAINTTIFAAF 846 (929)
Q Consensus 821 ~p~~~~~~~~v~~~s~~~~~~~Y~~~ 846 (929)
||+| ..++++..+.....+.|...
T Consensus 228 nP~r--~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 228 NPEQ--SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred Chhh--HHHHHHHHHHHHHHHHHHHH
Confidence 9974 23347777777777777654
|
|
| >KOG3832|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=81.33 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=126.5
Q ss_pred cchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccc-------cc------------------
Q psy4524 86 LKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLP-------FM------------------ 140 (929)
Q Consensus 86 ~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~-------~~------------------ 140 (929)
-.|+.+|+|.|+||.||++.||..++.++.+.+++++-+....++.....+.. ++
T Consensus 21 mfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~dvli 100 (319)
T KOG3832|consen 21 MFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDDVLI 100 (319)
T ss_pred hhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCcEEE
Confidence 35788999999999999999999999999999999998888777664433310 00
Q ss_pred cCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy4524 141 SIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAV 220 (929)
Q Consensus 141 ~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l 220 (929)
+.+|+..-..-.......|.+..+.+.++. ..|+++...+ .|.+..+.. .+++++.+|-...|--.+--..-++
T Consensus 101 ~d~yeraekrpilsvqrrgspnpfeisdkv---emgemasmff--nkvgln~fy-f~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 101 ADGYERAEKRPILSVQRRGSPNPFEISDKV---EMGEMASMFF--NKVGLNFFY-FAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred ecCchhcccCCcceecccCCCCcceeehhh---hHHHHHHHHH--HhhhHHHHH-HHHHHHHhhhhhhhhhcCchHhhhh
Confidence 001111111100011112222223344444 5566666556 344444443 3777888888888865554443333
Q ss_pred HHhhcC-------------CCC------------hhHHHHHHHHH-HHHhhcccCCChhhHHHHHHHHHHHHHHhheeEE
Q psy4524 221 ADQYYG-------------DHD------------IRFYMLLIFFP-ILLLCWIRNLKLLAPFSTLATAITIASFGITLYY 274 (929)
Q Consensus 221 ~~~~~~-------------~~~------------~~~~~~i~~~~-~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~ 274 (929)
.....+ +.+ .|++..++.++ .+|..+. ++.+-+++-++..++-.......+..
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l 253 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISL 253 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhh
Confidence 221100 111 13344443333 3465553 34555555555444443333332222
Q ss_pred Eeecc-CCCC-CCCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCC
Q psy4524 275 VFTDV-PSIS-ERNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSP 321 (929)
Q Consensus 275 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p 321 (929)
+..+. .+.. ..++...+-++-..++...|+|.||...|.....|+.+
T Consensus 254 ~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 254 ATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 21111 1111 11223345566677899999999999999998888765
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0005 Score=86.21 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=116.1
Q ss_pred hhhhh-ccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhhh
Q psy4524 91 VVAEL-KELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKN 169 (929)
Q Consensus 91 vgaGi-LslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (929)
+|.|+ +.+++...++|...+++..++.++++..+...+.+.+....+ .+|+......|.
T Consensus 93 iGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p--------------------~aGG~Y~yisra 152 (953)
T TIGR00930 93 WGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVV--------------------KGGGAYYLISRS 152 (953)
T ss_pred heeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------CccHHHHHHHHH
Confidence 47776 567888889998878888888888888887766665322111 123322222231
Q ss_pred hhhhhccc-hhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcC------CCChhHHHHHHHHHHH
Q psy4524 170 ILVILIGL-VGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYG------DHDIRFYMLLIFFPIL 242 (929)
Q Consensus 170 ~~~~~fg~-lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~------~~~~~~~~~i~~~~~~ 242 (929)
+|+ +|+ .+.. ..++.+..++..|.+-.++.+..+++.... ..+.+++..+..+++.
T Consensus 153 -----lGp~~Gf-----------~iG~-~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~ 215 (953)
T TIGR00930 153 -----LGPEFGG-----------SIGL-IFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLL 215 (953)
T ss_pred -----hCcHHHH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHH
Confidence 221 111 1111 223333444555766667776666642110 1123444333333333
Q ss_pred HhhcccCCChhhHHHHHHHHHHHHHHhheeEEEeec---cCCC----------CCC--CCCCCCC-cchhhhhHHHhhhc
Q psy4524 243 LLCWIRNLKLLAPFSTLATAITIASFGITLYYVFTD---VPSI----------SER--NPGGNLK-ELPLFFGTVMFSMS 306 (929)
Q Consensus 243 pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~---~~~~----------~~~--~~~~~~~-~~~~~~~~~~faf~ 306 (929)
.++ ....+..+.+..+-++..+++++.+++.+... .+.. .+. +...+.. ++...++++.+||.
T Consensus 216 ~In-~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~t 294 (953)
T TIGR00930 216 GIS-FAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVT 294 (953)
T ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHH
Confidence 233 22334444444333333233322222222111 0000 000 0001111 25667788888999
Q ss_pred cccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHH
Q psy4524 307 AIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFG 349 (929)
Q Consensus 307 ~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g 349 (929)
|-.....+-.|+|||+ ..+| .+..+..+++++|+++.+..
T Consensus 295 Gi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 295 GILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred HHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 5777 67899999999999997643
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0002 Score=83.29 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=46.2
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHH
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYL 351 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~ 351 (929)
++..++....|+|.|-.....+-+|+|||+ +.+| .+..+..++.++|++.......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 344556778999999999999999999995 6888 6789999999999987665543
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=83.44 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHH
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYL 351 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~ 351 (929)
+..++..++...+|+|.+........+|+|||+ +.+| .+..++.++.++|++.......
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 344567778889999999999999999999994 5677 6688999999999998766553
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=85.14 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=131.1
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHH-hhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAF-KDSGYL-LGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af-~~~G~~-~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
+.+|+.+.++.....++.++|+|++..|... +..|-. ..+...++.+++.........|.....++. .. .|.-
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~--GG--~y~y- 79 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN--GA--DYVY- 79 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC--ceee-
Confidence 3567899999999999999999999999764 445532 345556677777777777777776544321 11 2222
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHH--HHHHHHHHHHhhhccc
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMI-VDEIGALCVYLLFIASNLSQVCVRFWGVTDLRL--YMLVLFPPLLLISWVP 749 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~-i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~~i~~~~~~pl~~~~ 749 (929)
.++++ |+...++...... .........+....++.+....+ .+... ...+.....+-....+
T Consensus 80 ~~~~~----------g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~ln~~ 144 (445)
T PRK11357 80 LKNAG----------SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-----IDPLLGKFIAAGLIIAFMLLHLR 144 (445)
T ss_pred HHHhc----------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHh
Confidence 22333 6666666665433 22222333444455555443221 11111 1111111222223345
Q ss_pred CchhhhhHHHHHHHHHHHHH---hhhhheeccCCCCCCCC-CC----ccCCCchhHHHHHHHHhhcccccccccccccCC
Q psy4524 750 NLKYIVPFSSSATGVMFVSL---AITMYYILGDFPSFSDR-TP----VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQH 821 (929)
Q Consensus 750 ~l~~l~~~S~~~~~~~~~~~---iii~~~~~~~~~~~~~~-~~----~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~ 821 (929)
..+..+++..+.....+..+ +++...... ..++.+. +. ..++.++...+....|+|.|-.......+|+||
T Consensus 145 gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 223 (445)
T PRK11357 145 SVEGGAAFQTLITIAKIIPFTIVIGLGIFWFK-AENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKN 223 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcC
Confidence 55655555554443332221 111111111 1111111 10 011234455677789999999999999999999
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy4524 822 PRQFTARLGVLNVSSAINTTIFAAFGLLAY 851 (929)
Q Consensus 822 p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 851 (929)
|+| ..++++..+..++.++|.+......
T Consensus 224 P~r--~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 224 PGK--TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred ccc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 974 3344999999999999998776544
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00084 Score=78.27 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=47.4
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
.+..++....|+|.|-......-+|+|||+ +.+| .+..+..+++++|.+..+..-...
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344566788999999999999999999995 6787 678999999999999887744333
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=85.18 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=138.0
Q ss_pred CCcchHHHHHHHHhhhhhhhhchhH-HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiLsLP-~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
|+.+.++..+..+..++|+|++..| .+.+++|-...+...++.+++.......+.|.....++ ..-.|.+.+++.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~----~gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV----VSGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCHHHHHHHH
Confidence 5788999999999999999999777 66777774433556677777777777777666643221 223577777766
Q ss_pred hccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhh
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVP 756 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 756 (929)
+ |+...+++.....+.......+.....++.+.... +......+..+..++ .-+...+..|..++
T Consensus 78 ~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~in~~gv~~~~~ 142 (478)
T TIGR00913 78 V----------DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT----DKVNPAVWIAIFYVF-IVIINLFGVKGYGE 142 (478)
T ss_pred c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHH-HHHHHHhcchHHHH
Confidence 6 67777777777766666555666656665554332 223333333322222 22223445566555
Q ss_pred HHHHHHHH---HHHHHhhhhhee-ccCCCC--------CCCCCCcc------CCCchhHHHHHHHHhhcccccccccccc
Q psy4524 757 FSSSATGV---MFVSLAITMYYI-LGDFPS--------FSDRTPVG------HLSDLPLFVGVTLFSLSSIGVTMPLENE 818 (929)
Q Consensus 757 ~S~~~~~~---~~~~~iii~~~~-~~~~~~--------~~~~~~~~------~~~~~~~~~g~~~faf~~h~~i~~i~~~ 818 (929)
++.+.... .+..++++.... ..+.++ +.+...+. .+.++...+....|+|.|-.......+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 55433322 111111111111 111110 00111111 1234555666789999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q psy4524 819 MQHPRQFTARLGVLNVSSAINTTIFAAFGLL 849 (929)
Q Consensus 819 m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 849 (929)
+|||+| ..++++..+...+.++|....+.
T Consensus 223 ~knP~r--~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANPRK--SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcChhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 34449999999999999987543
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00033 Score=80.70 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=48.3
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhH
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFF 348 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 348 (929)
++.++..++....|+|.|-......-+|+||| |+.+| .+..+..++.++|++....
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999 56888 6689999999999998765
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0013 Score=77.26 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=90.7
Q ss_pred chhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC----cccc----ccccc
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS----TSGS----VTLNL 365 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~----v~~~----iL~~~ 365 (929)
+..++....|+|.|-.....+.+|.||||+.+| .+..+...+.++|.+..+..+...+++ .+++ +....
T Consensus 197 ~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~ 273 (468)
T TIGR03810 197 VKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM 273 (468)
T ss_pred HHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH
Confidence 446677899999999998889999999888888 668899999999999887766554422 1122 11111
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHh--------hhhhccccChhhhHHHHHHHHHHHHHHHHHHH-Hcc
Q psy4524 366 PAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNC--------YLKTHMEKNSLATMWIYVLKTTICIITFAFAI-MIP 436 (929)
Q Consensus 366 ~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~-~iP 436 (929)
. +++...+..++..++.+.+.--......+..+.. .+.+. +++..+ ....++...+..+..++.. .-+
T Consensus 274 ~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~-~~~~tP-~~al~~~~~i~~~~~l~~~~~~~ 350 (468)
T TIGR03810 274 V-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKE-NANGAP-TNALWLTNGLIQIFLLTTLFSEQ 350 (468)
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-CCCCCC-HHHHHHHHHHHHHHHHHHHccHH
Confidence 1 1233344455555555444433334444444432 22221 122212 2222222222222222211 123
Q ss_pred chhHHHHHHhhhhhhhhhhcccchhhcccc
Q psy4524 437 NLELFISLIGSLCLPFMAIGLPALLRSTAV 466 (929)
Q Consensus 437 ~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~ 466 (929)
.++.+.++.+ ....+.|.++++.+++.+
T Consensus 351 ~~~~l~~~~~--~~~li~y~~~~~~~~~l~ 378 (468)
T TIGR03810 351 AYNFAISLAT--SAILVPYLWSAAYQVKLS 378 (468)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4566666533 355678888888777754
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00058 Score=79.30 Aligned_cols=60 Identities=5% Similarity=-0.038 Sum_probs=50.6
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
+.++..++....|+|.|-.......+|+||| |+.+| .+..+..++.++|++..+......
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4466777888999999999999999999999 57888 668899999999999887765444
|
|
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00023 Score=83.46 Aligned_cols=246 Identities=16% Similarity=0.071 Sum_probs=147.5
Q ss_pred cccccCCCcchHH-HHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH
Q psy4524 592 LKAVSKKPLVYWD-ALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYP 670 (929)
Q Consensus 592 ~~~~~~~~~s~~~-a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~ 670 (929)
++++.+++.+.++ .......+++|.|++.+|......+ ....+..++.+++.........|.... .++.-.+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-----~p~~GG~y 79 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-----IPSAGGAY 79 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCee
Confidence 3445556777777 8888899999999999999888776 222222344445555555555555532 22222344
Q ss_pred HHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCchHHHHH--HHHHHHHhhhc
Q psy4524 671 EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDLRLYML--VLFPPLLLISW 747 (929)
Q Consensus 671 ~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~--i~~~~~~pl~~ 747 (929)
+-.++.+ |++..+.......+.......+.....++.+....+.... ......+.. +......-+..
T Consensus 80 ~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln 149 (466)
T COG0531 80 AYAKRAL----------GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLN 149 (466)
T ss_pred eehhhhc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHH
Confidence 4445444 6666677777777777777777777777766666553110 111112222 22223333344
Q ss_pred ccCchhhhhHHHHHHHHHHHHHhhhhheeccC-CCC-CCCCCC----ccCCCchhHHHHHHHHhhcccccccccccccCC
Q psy4524 748 VPNLKYIVPFSSSATGVMFVSLAITMYYILGD-FPS-FSDRTP----VGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQH 821 (929)
Q Consensus 748 ~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~-~~~-~~~~~~----~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~ 821 (929)
.+..+...++..+.....+...++........ ..+ .+.... ......+...+....++|.|-....+..+|+||
T Consensus 150 ~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~kn 229 (466)
T COG0531 150 LRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKN 229 (466)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcC
Confidence 55666666666555555433332222221111 110 111111 111223556677789999999999999999999
Q ss_pred Ccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4524 822 PRQ-FTARLGVLNVSSAINTTIFAAFGLLAYLKYGD 856 (929)
Q Consensus 822 p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 856 (929)
|+| .+| .+..+...+.++|...........++
T Consensus 230 p~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 230 PKRTIPR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred ccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 964 355 99999999999999999988877775
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00042 Score=81.45 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=47.5
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
.+..++....|+|.|-.......+|+||+|+.+| .+..+..++.++|++.........
T Consensus 200 ~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 200 QVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4555677799999999999999999999777888 668899999999998877654433
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=80.48 Aligned_cols=243 Identities=16% Similarity=0.099 Sum_probs=157.1
Q ss_pred ccccCCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy4524 593 KAVSKKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPE 671 (929)
Q Consensus 593 ~~~~~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~ 671 (929)
++..+|+.+.++--+.-+...||+|.+ +--.+.+.+|=- -++..+++|++.++-++.|.|-.. .+++..|+.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~-----~~p~~gSF~~ 81 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLV-----ANPVSGSFSD 81 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCcHHH
Confidence 344568889999999999999999986 666788888843 345567778888888888888773 4456679999
Q ss_pred HHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH--Hhhhccc
Q psy4524 672 ILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPL--LLISWVP 749 (929)
Q Consensus 672 l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~--~pl~~~~ 749 (929)
.+++.+ |++..++....-...-.-++.+-+..++..++..+++ .+.+.+.++..+++ .-+...|
T Consensus 82 ~a~~~l----------G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 82 YARKYL----------GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 8999999999888888888888888888887766655 34444444444333 3344455
Q ss_pred Cchhhh-hHHHHHHHHH--HHHHhhhhheeccCCCC----CC---CCC--CccCCCchhHHHHHHHHhhccccccccccc
Q psy4524 750 NLKYIV-PFSSSATGVM--FVSLAITMYYILGDFPS----FS---DRT--PVGHLSDLPLFVGVTLFSLSSIGVTMPLEN 817 (929)
Q Consensus 750 ~l~~l~-~~S~~~~~~~--~~~~iii~~~~~~~~~~----~~---~~~--~~~~~~~~~~~~g~~~faf~~h~~i~~i~~ 817 (929)
...++- |++.+=+..+ ++.+.+.+.......++ .+ +.. -+..+.++..++-+.+|||.+...+=-..+
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~ 227 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAA 227 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555544 4555433333 22333333222111111 11 111 123345666788889999999999999999
Q ss_pred ccCCCcccccchhHHHHHHHHHHHHH-----HHHHHHHHHhcccc
Q psy4524 818 EMQHPRQFTARLGVLNVSSAINTTIF-----AAFGLLAYLKYGDE 857 (929)
Q Consensus 818 ~m~~p~~~~~~~~v~~~s~~~~~~~Y-----~~~g~~gY~~fG~~ 857 (929)
|-|||++ .++|+......=+.++| .++.+.-+-.++++
T Consensus 228 Et~dP~k--~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 228 EAKDPEK--AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred hhcChhh--HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 9999985 23335444333333343 44555555444443
|
|
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=76.88 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=92.4
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCc-c----cc---c
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPST-S----GS---V 361 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v-~----~~---i 361 (929)
+.++..++....|+|.|-.+.....+|+|||+ +.+| ++..+...+.++|++..+..-.....+. + ++ +
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~ 256 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV 256 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHH
Confidence 34566778889999999999999999999996 4777 5566777888888886665333222221 1 11 1
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--------hhhccccChhhhHHHHHHHHHHHHHHHHHHH
Q psy4524 362 TLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY--------LKTHMEKNSLATMWIYVLKTTICIITFAFAI 433 (929)
Q Consensus 362 L~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~ 433 (929)
..... ......+......++.+.+.--..+...+.++..- +++. +++..+ ....++...+..+..+...
T Consensus 257 ~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~-~~~~~P-~~Ail~~~~~~~l~~l~~~ 333 (446)
T PRK10197 257 LELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKI-NRSKTP-YVAVLLSTGAAFLTVVVNY 333 (446)
T ss_pred HHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhh-CcCCCc-HHHHHHHHHHHHHHHHHHh
Confidence 11221 12233344444555554554444555555555432 1111 122111 2222333233333333322
Q ss_pred Hcc--chhHHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 434 MIP--NLELFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 434 ~iP--~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
..| .++.++++.+...- +.|..+.+-+++.++
T Consensus 334 ~~~~~~~~~l~~~~~~~~l--i~y~~~~~a~i~lr~ 367 (446)
T PRK10197 334 YAPAKVFKFLIDSSGAIAL--LVYLVIAVSQLRMRK 367 (446)
T ss_pred cChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333 36777776555444 777788777777554
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=76.23 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=44.6
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHh
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLK 352 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~ 352 (929)
++..++....|+|.|-.......+|+|||+ +.+| ++..+......+|++...+....
T Consensus 202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 202 AVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeE
Confidence 466778889999999999999999999995 5777 44566777788888865544433
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00047 Score=80.30 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=146.2
Q ss_pred HhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCccccccc
Q psy4524 610 IKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLA 688 (929)
Q Consensus 610 ~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~~~~~G 688 (929)
+.++||+|++-.|- +.++.|- ..++..++.+++.......+.|..... ++.-...+.+++.+ |
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-----P~~Gg~y~y~~~~~----------G 67 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-----PDTGSFSTYADKAI----------G 67 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHc----------C
Confidence 56899999998886 7888886 377777777887777777777766432 23335566666655 7
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHHHHH---
Q psy4524 689 PYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVM--- 765 (929)
Q Consensus 689 ~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~--- 765 (929)
+...+++.....+.............+..++. +.+......+.++..++.. .......|..+.+..+....-
T Consensus 68 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 68 RWAGYTIGWLYWWFWVLVIPLEANIAAMILHS----WVPGIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHH
Confidence 87888877777665544444333333333322 2222222222222222222 222334555544444333221
Q ss_pred HHHHhhhhheeccC-CC--C-------CCCCC-CccCCCchhHHHHHHHHhhcccccccccccccCCCcccccchhHHHH
Q psy4524 766 FVSLAITMYYILGD-FP--S-------FSDRT-PVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNV 834 (929)
Q Consensus 766 ~~~~iii~~~~~~~-~~--~-------~~~~~-~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~ 834 (929)
++.+++........ .+ + +++.. .+..+.++...+....|+|.|-.++....+|+|||+| ..++++..
T Consensus 143 li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r--~iPrai~~ 220 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK--HIVRATNS 220 (446)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh--hHHHHHHH
Confidence 11111111110110 00 0 00000 1122345667788899999999999999999999974 33448888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-c----c---ccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhh
Q psy4524 835 SSAINTTIFAAFGLLAYLKYGDEV-Q----G---SITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 835 s~~~~~~~Y~~~g~~gY~~fG~~~-~----~---~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~ 902 (929)
+...+.++|....+..-.....+. + + ...++... .+...+..+...++.+.+.--.++...+.+...
T Consensus 221 ~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 221 VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999886665333322211 1 0 11222221 234445555555555555555555555555444
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.002 Score=75.13 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=41.7
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGF 347 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 347 (929)
++..++....|+|.|.......-+|+|||+ +.+| .+..+..++..+|+..-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 345666778899999999999999999994 5788 567788888888877644
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >KOG1287|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.3e-05 Score=83.63 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=142.9
Q ss_pred CcccccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy4524 591 NLKAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSG--YLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT 668 (929)
Q Consensus 591 ~~~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G--~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~s 668 (929)
.+..+.+++.+.+.+++.++++++|+|++.-|..+.+.+ ...+++.-+++|+++......-.|..-..+ ++.-+
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ip----ksGgd 80 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIP----KSGGD 80 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCcc
Confidence 344456789999999999999999999999998877555 445666777888888888777766553322 22235
Q ss_pred HHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhH-HHHHHHHHHH-HHHHHhhhcCCCchHHHHHHHHHHHHhhh
Q psy4524 669 YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGAL-CVYLLFIASN-LSQVCVRFWGVTDLRLYMLVLFPPLLLIS 746 (929)
Q Consensus 669 y~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~-~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~i~~~~~~pl~ 746 (929)
|.-+.+ +| |+.........-.+...... ..+-+..++. +.+.++. . ..++...-++....+..+.
T Consensus 81 ~ayi~~-af----------g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c-~~p~~~~~lla~~~l~~lt 147 (479)
T KOG1287|consen 81 YAYISE-AF----------GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-C-DVPRVASKLLAAALLVLLT 147 (479)
T ss_pred hhhHHH-Hh----------ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-C-CCchHHHHHHHHHHHHHHH
Confidence 555543 34 55444444443333333333 5556666665 4554441 1 1222222233333333333
Q ss_pred cccCchhhhhHHHHHHHHH---HHHHhhhhh----eeccCC-CCCCCCC---CccCCCchhHHHHHHHHhhccccccccc
Q psy4524 747 WVPNLKYIVPFSSSATGVM---FVSLAITMY----YILGDF-PSFSDRT---PVGHLSDLPLFVGVTLFSLSSIGVTMPL 815 (929)
Q Consensus 747 ~~~~l~~l~~~S~~~~~~~---~~~~iii~~----~~~~~~-~~~~~~~---~~~~~~~~~~~~g~~~faf~~h~~i~~i 815 (929)
. .|....++.+.+-.+.. +.++..+.. ...... .+.++.+ ...+..++..++-...|||.|=..+=.+
T Consensus 148 ~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~v 226 (479)
T KOG1287|consen 148 L-INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYV 226 (479)
T ss_pred H-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccc
Confidence 3 34444444443332222 222222222 111111 1111110 1122345667788889999999999999
Q ss_pred ccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy4524 816 ENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLK 853 (929)
Q Consensus 816 ~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~ 853 (929)
.+|+|||+| .++++..+++.+++++|.++=+..+..
T Consensus 227 teEiknP~k--tLP~Ai~isi~lvt~iYil~NvAy~~v 262 (479)
T KOG1287|consen 227 TEEIKNPRR--TLPRAILISIPLVTVIYVLVNVAYFTV 262 (479)
T ss_pred hHhhcCccc--cchHHHHHhhHHHHHHHHHhHhheeEe
Confidence 999999974 344599999999999999987765543
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0012 Score=77.60 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=43.9
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHH
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGY 350 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 350 (929)
.++..++....|+|.|-......-+|+|||+ +.+| ++..+...+.++|.+.....+
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 3467788889999999999999999999995 4677 445666667778877665554
|
|
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0023 Score=74.85 Aligned_cols=167 Identities=13% Similarity=0.258 Sum_probs=84.3
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC--c---ccccc---c
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS--T---SGSVT---L 363 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~--v---~~~iL---~ 363 (929)
++..+++...|+|.|-.......+|+|||+ +.+| .+..+.....+.|...-.+ .....+. . +++.. .
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~-~~~~~p~~~l~~~~sP~~~~~~ 276 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAV-LLSLMPWTRVTADTSPFVLIFH 276 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH-HheecChhccCCCCCcHHHHHH
Confidence 344567788999999999999999999995 5777 4455556666666554322 1111111 1 11211 1
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--------hhhccccChhhhHHHHHHHHHHHHHHHHHHHHc
Q psy4524 364 NLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY--------LKTHMEKNSLATMWIYVLKTTICIITFAFAIMI 435 (929)
Q Consensus 364 ~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~i 435 (929)
+.. +.....+......++.+.+.--..+...+.++..- +.+. +++..+ ....++...+..+..++....
T Consensus 277 ~~g-~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv-~~~~~P-~~Ail~~~~i~~l~~l~~~~~ 353 (456)
T PRK10238 277 ELG-DTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASV-DKRGVP-VNTILVSALVTALCVLINYLA 353 (456)
T ss_pred HcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-CcCCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 111 11222233344444444443333455555555432 2211 122211 222233333333333332223
Q ss_pred c--chhHHHHHHhhhhhhhhhhcccchhhcccccc
Q psy4524 436 P--NLELFISLIGSLCLPFMAIGLPALLRSTAVQP 468 (929)
Q Consensus 436 P--~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~~ 468 (929)
| .++.++++. ..+..+.|.+|.+.+++.++.
T Consensus 354 ~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 354 PESAFGLLMALV--VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3 255566653 345668999999999886653
|
|
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=77.98 Aligned_cols=166 Identities=12% Similarity=0.051 Sum_probs=91.2
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC---cccccccccC
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS---TSGSVTLNLP 366 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~---v~~~iL~~~~ 366 (929)
+.++..+.....|+|.|-.......+|+|||+ +.+| .+..++.+++++|+++.+.--...+.+ .+++...-+.
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~ 306 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE 306 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH
Confidence 34566778889999999999999999999995 4787 678999999999998876654333322 1122111111
Q ss_pred --CCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--------hhhccccChhhhHHHHHHHHHHHHHHHHHHHHcc
Q psy4524 367 --AGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY--------LKTHMEKNSLATMWIYVLKTTICIITFAFAIMIP 436 (929)
Q Consensus 367 --~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP 436 (929)
..++...+..++...++..+.--..+...+.++..- +.+-.++.+.+ ....++ ..+++.+++.. .
T Consensus 307 ~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP-~~Ail~---~~iv~~il~~~-~ 381 (557)
T TIGR00906 307 YVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTP-INATVV---SGAIAALMAFL-F 381 (557)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCc-HHHHHH---HHHHHHHHHHH-c
Confidence 112333333444444444443333445455555432 11111111111 111111 22223333333 3
Q ss_pred chhHHHHHHhhhhhhhhhhcccchhhcccc
Q psy4524 437 NLELFISLIGSLCLPFMAIGLPALLRSTAV 466 (929)
Q Consensus 437 ~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~ 466 (929)
+++.+.++. ..+..+.|.++++..++.|
T Consensus 382 ~~~~l~~l~--sig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 382 DLKALVDLL--SIGTLLAYSLVAACVLILR 409 (557)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 567776654 3455688888877766544
|
|
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00034 Score=79.12 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=138.5
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhhh
Q psy4524 90 TVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKN 169 (929)
Q Consensus 90 ~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (929)
++|+|++.+|....+.+--.+.+..++.+++.....+++.+..++. ++ . +..|..+.. .
T Consensus 16 ~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-p~-~--~~~~~~~~~------~----------- 74 (359)
T TIGR00912 16 MIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-PE-K--NFSEILSKY------L----------- 74 (359)
T ss_pred HHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-CC-C--CHHHHHHHH------h-----------
Confidence 3599999999987664434455666777777777777777775443 21 2 445554443 1
Q ss_pred hhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccC
Q psy4524 170 ILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRN 249 (929)
Q Consensus 170 ~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~ 249 (929)
| |+.+.++.. ....+.+..+.......+|.++... .++... +...+..+...-....+.
T Consensus 75 ------G----------k~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---l~~tp~-~~~~l~~l~~~~~~~~~G 133 (359)
T TIGR00912 75 ------G----------KILGRLLSI-LFILYFFLIAAYLIRIFADFIKTYL---LPRTPI-IVIIILIIIVSIYIVRKG 133 (359)
T ss_pred ------h----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCH-HHHHHHHHHHHHHHHHcc
Confidence 1 111222221 2222323333333334444443322 122222 222222222222334456
Q ss_pred CChhhHHHHHHHHHHHHH-HhheeEEEeeccCCCCCC--CCCCCCCcchhhh-hHHHhhhccccchhhhhhhccCCCCCC
Q psy4524 250 LKLLAPFSTLATAITIAS-FGITLYYVFTDVPSISER--NPGGNLKELPLFF-GTVMFSMSAIGIIMPLENEMRSPSKFT 325 (929)
Q Consensus 250 l~~L~~~S~~~~~~i~~~-v~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~eMk~p~~~~ 325 (929)
++..+.++.+-....+.. ++.+......+. +.++- ..+.++.+...+. ....++|.+.....-...++|||++.+
T Consensus 134 i~~i~r~~~i~~~~~i~~~~~il~~~~~~~~-~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~ 212 (359)
T TIGR00912 134 IEVLLRTAEILLIIFLILFILVLILLAPKLG-NIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIK 212 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhH
Confidence 777776666555444333 122222111111 11111 1122333333333 367789988888888889999998888
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccc----cccccCC---CChHH---HHHHHHHHHHHHHHhccchhHHH
Q psy4524 326 SKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGS----VTLNLPA---GDLLA---QSVKVMLALAIFCTFALPQYIVY 395 (929)
Q Consensus 326 ~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~----iL~~~~~---~~~~~---~i~~~~~~i~l~~s~pl~~~p~~ 395 (929)
| ....+..++..+|...-+..-..+|.+..++ .+..... .+... .+.-.....+......+..+...
T Consensus 213 k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~ 289 (359)
T TIGR00912 213 K---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAV 289 (359)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6688999999999999888888888653322 2211111 11111 12233344455666666677776
Q ss_pred HHHHHh
Q psy4524 396 NIVWNC 401 (929)
Q Consensus 396 ~~~~~~ 401 (929)
..+.+.
T Consensus 290 ~~~~~~ 295 (359)
T TIGR00912 290 KGLSKL 295 (359)
T ss_pred HHHHHH
Confidence 665544
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0028 Score=74.09 Aligned_cols=172 Identities=11% Similarity=0.112 Sum_probs=94.9
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC-cc---cccc---
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS-TS---GSVT--- 362 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-v~---~~iL--- 362 (929)
+.++..++....|+|.+-.......+|+|||+ +.+| ++..+.....++|+......-.....+ .. ++..
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~ 275 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF 275 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence 44566788899999999999999999999994 6777 556666777778877644443333322 11 1111
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--------hhhccccChhhhHHHHHHHHHHHHHHHHHHHH
Q psy4524 363 LNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY--------LKTHMEKNSLATMWIYVLKTTICIITFAFAIM 434 (929)
Q Consensus 363 ~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ 434 (929)
.+.. .+....+......++.+.+.--..+...+.++..- +.+ .+++..+ +...++......++..+...
T Consensus 276 ~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~-~~~~g~P-~~al~~~~~~~~l~~~~~~~ 352 (461)
T PRK10746 276 AKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAK-VSRHGVP-VAGVAVSILILLVGSCLNYI 352 (461)
T ss_pred HHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHH-hCCCCCc-HHHHHHHHHHHHHHHHHHHh
Confidence 1111 01122333444444444444444455555555432 111 1122212 22223333333344445555
Q ss_pred ccchhHHHHHHhhhhh--hhhhhcccchhhcccccc
Q psy4524 435 IPNLELFISLIGSLCL--PFMAIGLPALLRSTAVQP 468 (929)
Q Consensus 435 iP~~~~vl~lvGa~~~--~~l~fi~P~l~~l~~~~~ 468 (929)
.|+-+.+++.+-++++ ..+.++++.+.+++.++.
T Consensus 353 ~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 353 IPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6776766666554433 477888888888876553
|
|
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00099 Score=77.22 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcc---ccc---c-
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTS---GSV---T- 362 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~---~~i---L- 362 (929)
.++....++...+|+|.|-.......+|+|| |+.+| .+..+..++.++|.+....-....+++.. ++. .
T Consensus 186 ~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T PF13520_consen 186 GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFA 261 (426)
T ss_dssp SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHH
T ss_pred cccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccc
Confidence 4445678889999999999999999999998 67888 77999999999999997776666654311 121 1
Q ss_pred ---cccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh
Q psy4524 363 ---LNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY 402 (929)
Q Consensus 363 ---~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~ 402 (929)
+... +++...+..++..+..+.+..-......+.++..-
T Consensus 262 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 262 VLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccc-ccccccccccccccccccccchhhcchhhcccccc
Confidence 1111 23445555566666666665555556666666543
|
... |
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.002 Score=76.00 Aligned_cols=165 Identities=10% Similarity=0.176 Sum_probs=87.3
Q ss_pred hhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC-cc---cccccccCC--C
Q psy4524 296 LFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS-TS---GSVTLNLPA--G 368 (929)
Q Consensus 296 ~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-v~---~~iL~~~~~--~ 368 (929)
.++...+|+|.|-..+....+|+|||+ +.+| .+..++..+.++|+..........+.+ .+ ++...-+.. .
T Consensus 224 ~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~ 300 (499)
T PRK15049 224 VLIQGVVFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV 300 (499)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc
Confidence 345578999999999999999999996 4777 557777777888887666544443321 11 121111100 1
Q ss_pred ChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--------hhhccccChhhhHHHHHHHHHHHHHHHHHHHHccc--h
Q psy4524 369 DLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCY--------LKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPN--L 438 (929)
Q Consensus 369 ~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~iP~--~ 438 (929)
+....+..+...++.+.+.--..+...+.++..- +.+ .+++..+ ....++..++..+..++....|. +
T Consensus 301 ~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~k-v~k~~~P-~~Ail~~~~i~~l~~~l~~~~~~~~f 378 (499)
T PRK15049 301 PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAK-MSRQHVP-YAGILATLVVYVVGVFLNYLVPSRVF 378 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH-hCCCCCC-HHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 1222333444444444444333444555555432 111 1122211 22223333333333333333342 5
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 439 ELFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 439 ~~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
+.++++. ..+..+.|.+|.+.+++.|+
T Consensus 379 ~~l~~~~--~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 379 EIVLNFA--SLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5555553 36677888999888887654
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0057 Score=72.09 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=44.5
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhH
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFF 348 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 348 (929)
.++..++....|+|.|-......-+|+|||+ +.+| ++..+..++.++|++..+.
T Consensus 197 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455667778999999999999999999995 5777 6688888999999987543
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0036 Score=73.19 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHH
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGY 350 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 350 (929)
++.++..++....|+|.|-.......+|+|||+ +.+| ++..+.....++|+.......
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999999999999999995 4677 567788888889977544443
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0057 Score=71.34 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=46.5
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHH
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGY 350 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 350 (929)
.++..++....|+|.+-.......+|+|||+ +.+| .+..++.+++++|.+......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999999999995 5677 678999999999998766543
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0022 Score=73.22 Aligned_cols=288 Identities=14% Similarity=0.088 Sum_probs=176.3
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+...+.-.+.-+...||+|.+ +.-.+.+++|=...++..++.|.+.+.++.-|.|.+-..+ ..-+|...+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-----~sGsF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-----VSGSFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCchhhhh
Confidence 3567888899999999999999997 8899999999998889999999999999999999885443 223577776
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhc--ccCc
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISW--VPNL 751 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l 751 (929)
.+.. ++-....+...-.+.-.-+...-+...+..++...+. ..+...|..++.++++.+.. .|..
T Consensus 116 ~rfv----------dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~---~v~~~~w~~iF~~~i~~iN~~~Vk~f 182 (541)
T COG0833 116 TRFV----------DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD---TVPPWIWIAIFLVLIFLLNLFGVKGF 182 (541)
T ss_pred hhhc----------CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC---CCChHHHHHHHHHHHHHHHHhccccc
Confidence 5433 4555566666555555555555555555554443322 35777888777766655544 4555
Q ss_pred hhhh-hHHHHHHHHHH--HHHhhhhheeccCCCCC------CCC-CCccCCCchhHHHHHHHHhhcccccccccccccCC
Q psy4524 752 KYIV-PFSSSATGVMF--VSLAITMYYILGDFPSF------SDR-TPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQH 821 (929)
Q Consensus 752 ~~l~-~~S~~~~~~~~--~~~iii~~~~~~~~~~~------~~~-~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~ 821 (929)
.+.- |+|.+=++.++ +.+.+++.......++. .+. +....+.++...+-...|||.|...+--...|=+|
T Consensus 183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~n 262 (541)
T COG0833 183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESEN 262 (541)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCC
Confidence 4433 45554444432 22222222222111111 111 11233344555566688999999999999999999
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHH-HHH-hcccc----------cccccccccCCC--ChHHHHHHHHHHHHHHHH
Q psy4524 822 PRQFTARLGVLNVSSAINTTIFAAFGLL-AYL-KYGDE----------VQGSITLNLPQE--DTLAVSVKLLLSVSILFT 887 (929)
Q Consensus 822 p~~~~~~~~v~~~s~~~~~~~Y~~~g~~-gY~-~fG~~----------~~~~il~n~~~~--~~~~~i~~~~~~i~l~~s 887 (929)
|+| .++++..-.+.=+.++|+..-++ |.+ -|.|. .++....-+.+. ..+..+.+....++++.+
T Consensus 263 P~K--~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa 340 (541)
T COG0833 263 PRK--SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSA 340 (541)
T ss_pred chh--hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHH
Confidence 974 34457777777777777643222 211 12221 111111111110 234456666666666666
Q ss_pred hccchhHHHHHHHhh
Q psy4524 888 FALPHFIVYDIVWNR 902 (929)
Q Consensus 888 yPL~~~p~~~~i~~~ 902 (929)
--=.+|..-.++...
T Consensus 341 ~NS~lYasSR~L~sL 355 (541)
T COG0833 341 ANSGLYASSRMLYSL 355 (541)
T ss_pred hhccchHHHHHHHHH
Confidence 666778888888777
|
|
| >KOG1286|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00041 Score=81.46 Aligned_cols=292 Identities=13% Similarity=0.047 Sum_probs=179.4
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 673 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 673 (929)
+.+|+.+.+.-.+.-+.++||+|++ ....+.++.|-..-++..++.+..++.++.-+.|..-+.+.. .-++...+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~----aGs~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS----AGSFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc----cccceeee
Confidence 5567888888888899999999998 677888888887677777777788888877777776443321 01222222
Q ss_pred HHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---------hhhcC-CCchHHHHHHHHHHHH
Q psy4524 674 GAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVC---------VRFWG-VTDLRLYMLVLFPPLL 743 (929)
Q Consensus 674 ~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~---------~~~~~-~~~~~~~~~i~~~~~~ 743 (929)
+ |..|+....++.....+..+-.+.+-....+..++.+. +.... .+-...+.++..+.+.
T Consensus 103 ~----------~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~ 172 (554)
T KOG1286|consen 103 Y----------RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLF 172 (554)
T ss_pred e----------eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHH
Confidence 2 44577778888888888888777777777777777765 11110 1111222222333333
Q ss_pred hhhcccCchhhhhHHHHHHHHHHHHHhhhhh-eeccCCC-CCCC-----CC--Cc-cCCCchhHHHHHHHHhhccccccc
Q psy4524 744 LISWVPNLKYIVPFSSSATGVMFVSLAITMY-YILGDFP-SFSD-----RT--PV-GHLSDLPLFVGVTLFSLSSIGVTM 813 (929)
Q Consensus 744 pl~~~~~l~~l~~~S~~~~~~~~~~~iii~~-~~~~~~~-~~~~-----~~--~~-~~~~~~~~~~g~~~faf~~h~~i~ 813 (929)
.....-+.+....+..+-.+..++...+++. ....+++ ++.. .+ .. ..++++...+-...|+|.|-..+-
T Consensus 173 gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va 252 (554)
T KOG1286|consen 173 GVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVA 252 (554)
T ss_pred HHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHH
Confidence 3333355566555554444443333333332 2222221 2221 11 11 226777888889999999999999
Q ss_pred ccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHh--ccc-ccccccc--------cccCCCChHHHHHHHHHHH
Q psy4524 814 PLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLK--YGD-EVQGSIT--------LNLPQEDTLAVSVKLLLSV 882 (929)
Q Consensus 814 ~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~--fG~-~~~~~il--------~n~~~~~~~~~i~~~~~~i 882 (929)
...+|-|||+| ..+++...++..++.+|....+.-=+. |.| +..++.. .+.+.-..+..+.++...+
T Consensus 253 ~~a~E~kNP~k--~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~ 330 (554)
T KOG1286|consen 253 TTAEEAKNPRK--AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILI 330 (554)
T ss_pred HHHHhccCCcc--cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHH
Confidence 99999999973 455599999999999999887643322 111 0111110 0001101222367777777
Q ss_pred HHHHHhccchhHHHHHHHhh
Q psy4524 883 SILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 883 ~l~~syPL~~~p~~~~i~~~ 902 (929)
.++.+---.++++-..+...
T Consensus 331 ~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 331 GLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HHHHHHHHHhHHhHHHHHHH
Confidence 77777777778887777766
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0078 Score=71.06 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=42.7
Q ss_pred hhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 297 FFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 297 ~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
+.....|+|.|-......-+|+|||+ +.+| ++..++..+.++|++....-....
T Consensus 210 ~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 210 VAMIVGFSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHheec
Confidence 34456799999999999999999995 5677 567888999999998866544443
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0043 Score=72.91 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=45.5
Q ss_pred chhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
+..++....|+|.|-......-+|+|||+ +.+| .+..+..++.++|+...+..-...+
T Consensus 208 ~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 208 ILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecC
Confidence 45566778999999999999999999995 4777 5678888888899888765443333
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.014 Score=68.74 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=124.6
Q ss_pred cCCCcchHHHHHHHHhhhhh--hhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALG--TGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG--~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
.+|+.+.++.+..-+. ++| .|+. +.+.+.++.|-..-+...++.+++.......+.|..... ++.-....-
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~-----P~~Gg~y~~ 83 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY-----PTSGGQYFW 83 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC-----CCCccHHHH
Confidence 4466777777665555 444 5654 445677777775456667777777777777777766432 222344444
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCC--C-chHH-HHHHHH--HHHHhhh
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGV--T-DLRL-YMLVLF--PPLLLIS 746 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~--~-~~~~-~~~i~~--~~~~pl~ 746 (929)
++++++ +.+|+...+++.....+.....+.+.....++.+........+. + ...+ ..++.. ..+.-..
T Consensus 84 ~~~~~g------~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 84 SAKLAP------PRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHHhcc------cccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHH
Confidence 455553 33467777777666666666655555555666655544321111 1 1111 111111 1112222
Q ss_pred cccCchhhhhHHHHHHHHHHHHHh---hhhheeccCC-CC----CCCCCCcc---CCCc--hhHHHHHHHHhhccccccc
Q psy4524 747 WVPNLKYIVPFSSSATGVMFVSLA---ITMYYILGDF-PS----FSDRTPVG---HLSD--LPLFVGVTLFSLSSIGVTM 813 (929)
Q Consensus 747 ~~~~l~~l~~~S~~~~~~~~~~~i---ii~~~~~~~~-~~----~~~~~~~~---~~~~--~~~~~g~~~faf~~h~~i~ 813 (929)
.....|..+++..+..+..+...+ ++........ .+ .++..+.. ...+ +...+-...|+|.|-....
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~ 237 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTA 237 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhh
Confidence 233444455554443332222211 1111111100 00 00000000 1112 2223344679999999999
Q ss_pred ccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4524 814 PLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYG 855 (929)
Q Consensus 814 ~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 855 (929)
...+|+|||+| ..++++..+..++.+++.+..+.-+...+
T Consensus 238 ~~a~E~knP~r--~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 238 HMAEEIENPEV--VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HHHHhcCChhh--hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999974 33448888877766655444443333333
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0062 Score=71.64 Aligned_cols=244 Identities=9% Similarity=-0.021 Sum_probs=123.7
Q ss_pred ccCCCcchHHHHHHHHhhh-hhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGA-LGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEI 672 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~-iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l 672 (929)
+-+|+.|.++.+..-++.+ +|+|+.++|. +..++|- ..+...++.++........+.|..... +..-....-
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~-----P~aGG~Y~~ 83 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARY-----PISGAIYQW 83 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCCHHHH
Confidence 3457788899888777764 8999998774 4556665 345555556666666666666655332 222233333
Q ss_pred HHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc-----CCCc------hHHHHHHHHHH
Q psy4524 673 LGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFW-----GVTD------LRLYMLVLFPP 741 (929)
Q Consensus 673 ~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~-----~~~~------~~~~~~i~~~~ 741 (929)
+++.+ |+...++......+.......+........++.+.+... +... ....+.+..+.
T Consensus 84 ~~~~~----------g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (475)
T TIGR03428 84 SRRMG----------GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLV 153 (475)
T ss_pred HHHHc----------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHH
Confidence 44444 566666666665555443333333334444433321100 0110 11111112222
Q ss_pred HHhhhcccCchhhhhHHHHHHHHHHHHHhhhh---heeccCCCC--CCCC--CCccCC-CchhHHHHHHHHhhccccccc
Q psy4524 742 LLLISWVPNLKYIVPFSSSATGVMFVSLAITM---YYILGDFPS--FSDR--TPVGHL-SDLPLFVGVTLFSLSSIGVTM 813 (929)
Q Consensus 742 ~~pl~~~~~l~~l~~~S~~~~~~~~~~~iii~---~~~~~~~~~--~~~~--~~~~~~-~~~~~~~g~~~faf~~h~~i~ 813 (929)
+.-....+..|..+++..+..+..+..++++. .....+.+. .++. .+..++ ..+....-...|+|.|-....
T Consensus 154 ~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 233 (475)
T TIGR03428 154 LTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAG 233 (475)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHH
Confidence 22222334556666665544433222222211 111111111 0110 000011 112233344689999999999
Q ss_pred ccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4524 814 PLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGD 856 (929)
Q Consensus 814 ~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 856 (929)
.+.+|+|||+| ..+|.+..+..+..++|.++-+......++
T Consensus 234 ~~aeE~knP~r--~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 234 ELSEETKNPRR--VAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHhcCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999974 334488888888877666655554444443
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0077 Score=70.61 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=51.1
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCC
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGP 355 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 355 (929)
.+..++....++|.|-.......+|+||| |+.+| .+..++.++.++|++.....-...++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 45666788899999999999999999999 56677 66888899999999998888877775
|
|
| >KOG1287|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0075 Score=68.53 Aligned_cols=172 Identities=10% Similarity=0.159 Sum_probs=102.6
Q ss_pred CCCCcchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCccccccccc--
Q psy4524 289 GNLKELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNL-- 365 (929)
Q Consensus 289 ~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~-- 365 (929)
.+..++..++-.-.|||.+=.+.=-+.+|+||| |.+|+ ++..++.+++++|+++=+..+..- ..+.++.+-
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~aV 274 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDAV 274 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhheeEec---CHHHhcccchH
Confidence 344457788888899999988888899999999 56777 779999999999999966555332 223333221
Q ss_pred ----CC---CChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccC-hhhhHHH-H-HHHHHHHHHHHHHHHHc
Q psy4524 366 ----PA---GDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKN-SLATMWI-Y-VLKTTICIITFAFAIMI 435 (929)
Q Consensus 366 ----~~---~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~iA~~i 435 (929)
.+ +++. .+.-+.++++.+.+.--.++...+.++..--+.|.++. ...+.++ . ....++..+..++..++
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~ 353 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLI 353 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 00 1111 23333333433333333344444444443212221110 0000011 0 12333444455556667
Q ss_pred cchhHHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 436 PNLELFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 436 P~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
.|++.+++.++=.-.....+.+=+++|+|.++
T Consensus 354 ~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~ 385 (479)
T KOG1287|consen 354 GDFDQLINYVSFAYWLFRGLSMAGLLWLRWKH 385 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 79999999998888888888889999987543
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.015 Score=67.98 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=41.7
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCCC-CCcccchhhhHHHHHHHHHHHHHhHH
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPSK-FTSKLGVLNVAMLSIALIYTGFGFFG 349 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g 349 (929)
++..++....|+|.|-.......+|+|||+| .+| .+..+...+.++|.......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999964 677 44566666777887775444
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.064 Score=63.26 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=39.0
Q ss_pred hhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 295 PLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 295 ~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
..++....|+|.|-......-+|+|||+ +.+| .+..+..++.++|.+..+.-+...+
T Consensus 220 ~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 220 LLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhHHHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445557799999999999999999994 6777 5566666666554444433333334
|
|
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00071 Score=79.70 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=128.0
Q ss_pred Hhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCccccccc
Q psy4524 610 IKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLA 688 (929)
Q Consensus 610 ~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~~~~~G 688 (929)
+.+++|+|++ +.+.+..+.|.....+..++.+++...+..-+.|...+.++ .-++.+..++.+ |
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~l----------g 71 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGL----------G 71 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhcc----------C
Confidence 4577888877 66788999998777888888999999998888888865542 234555555444 4
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HhhhcCCCchHHH----HHHHHHHHHhhhcccCchhhhhHHHHHH
Q psy4524 689 PYGRGLSFTAMIVDEIGALCVYLLFIASNLSQV--CVRFWGVTDLRLY----MLVLFPPLLLISWVPNLKYIVPFSSSAT 762 (929)
Q Consensus 689 ~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~----~~i~~~~~~pl~~~~~l~~l~~~S~~~~ 762 (929)
+.....+.....+.............+..++.. .+... ....+ ..+..+++..+. ....|........-.
T Consensus 72 ~~~Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~ 147 (478)
T PF00324_consen 72 PALGFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLP---STWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILT 147 (478)
T ss_pred CcCCceeeHHHHHHHHHHHHhhhhhhhhhhcccccccccc---ccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHH
Confidence 544455555444444444444444444443333 22211 01111 222222222222 223333333222211
Q ss_pred HH---HHHHHhhhh-h-eeccCCCCCC-----C------C------CCccCCCchhHHHHHHHHhhcccccccccccccC
Q psy4524 763 GV---MFVSLAITM-Y-YILGDFPSFS-----D------R------TPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQ 820 (929)
Q Consensus 763 ~~---~~~~~iii~-~-~~~~~~~~~~-----~------~------~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~ 820 (929)
.. .++.+++.. . ......+... + . +...++.++...+....++|.|-......-+|.|
T Consensus 148 ~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k 227 (478)
T PF00324_consen 148 IIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAK 227 (478)
T ss_pred HHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCC
Confidence 11 111111111 1 1111111111 0 0 0112256677888889999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4524 821 HPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDE 857 (929)
Q Consensus 821 ~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 857 (929)
||+| .+++....+.....++|.......-...+.+
T Consensus 228 ~P~k--~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 228 NPRK--TIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred Cchh--hhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 9984 3445999999999999998877665555544
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.012 Score=69.85 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhc
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKY 353 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 353 (929)
.++..++....|+|.|-.......+|+|||+ +.+| .+..+..++.++|++..+......
T Consensus 235 ~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 235 GGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456678889999999999999999999994 5777 678899999999999865554333
|
|
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=66.04 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.2
Q ss_pred hhHHHHHHHHhhcccccccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q psy4524 795 LPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLA 850 (929)
Q Consensus 795 ~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~g 850 (929)
+...+....|+|.|........+|+|||+| ..+|++..+...+..+|.+..+..
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~--~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEK--NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 445566688999999999999999999973 333499999999999999865443
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.018 Score=63.87 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=138.3
Q ss_pred hhhhhhccchhhhhhh---hHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhh
Q psy4524 90 TVVAELKELPLFFGTV---MFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFV 166 (929)
Q Consensus 90 ~vgaGiLslP~af~~~---G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~ 166 (929)
.+|+|++.+|....+. ||+..+ +.+.......++..+..++.. ++ +..|..+.. .|
T Consensus 15 ~~g~~~l~~p~~l~~~~~d~Wi~~l----l~~~~~l~~~~l~~~l~~~~p--~~--~l~~~~~~~------~G------- 73 (320)
T PF03845_consen 15 IIGTGILFLPAILAEQAGDAWISVL----LGGLIGLLLALLIYYLLKRFP--GK--TLVEISEKL------FG------- 73 (320)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHHHCC--CC--CHHHHHHHH------hC-------
Confidence 4599999999997666 465433 333333344444444433322 12 666666654 11
Q ss_pred hhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhc
Q psy4524 167 LKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCW 246 (929)
Q Consensus 167 ~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~ 246 (929)
|+.+.++.. ....+.+......+...+|.++... .++.+..+.. ...++..-..-
T Consensus 74 --------------------k~lg~ii~~-~~~l~~l~~~~~~lr~~~~~i~~~~---lp~TP~~~i~-~~~ll~~~y~a 128 (320)
T PF03845_consen 74 --------------------KWLGKIINL-LYILYFLLISALVLREFSEFIKTYL---LPETPIWVII-LLFLLVAAYAA 128 (320)
T ss_pred --------------------cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh---cCcCCHHHHH-HHHHHHHHHHH
Confidence 121223322 2233333334444444455544433 2223333322 23333333445
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhheeEEEeeccCCCCC--CCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCCCCC
Q psy4524 247 IRNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISE--RNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSKF 324 (929)
Q Consensus 247 ~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~~ 324 (929)
-+.++.+...+.+-....+...+.+......+.. .++ +..+.++.+...+.-...+.|.+-....-+...+|||++.
T Consensus 129 ~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~-~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 207 (320)
T PF03845_consen 129 RKGIEVIARVAEILFPIFLILLLLILLLSIPNID-WDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKL 207 (320)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-HHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6677777765544444443333333333222211 111 1223455667777777788888888888888999999887
Q ss_pred CcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccc----cccCC---CChHH---HHHHHHHHHHHHHHhccchhHH
Q psy4524 325 TSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVT----LNLPA---GDLLA---QSVKVMLALAIFCTFALPQYIV 394 (929)
Q Consensus 325 ~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL----~~~~~---~~~~~---~i~~~~~~i~l~~s~pl~~~p~ 394 (929)
+| ....+..+...+|...-+..-..||.+..+... ..... ++... .+.-............++.+..
T Consensus 208 ~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~ 284 (320)
T PF03845_consen 208 KK---SLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAA 284 (320)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 668888888888888888888888865333322 11110 11111 1122334444566666677777
Q ss_pred HHHHHHhh
Q psy4524 395 YNIVWNCY 402 (929)
Q Consensus 395 ~~~~~~~~ 402 (929)
.+.+-+.+
T Consensus 285 ~~~~~~~f 292 (320)
T PF03845_consen 285 SEGLSQLF 292 (320)
T ss_pred HHHHHHHh
Confidence 76654443
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.083 Score=56.72 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=96.9
Q ss_pred HHHHHhhhhhhhhchhHHH---HhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCc
Q psy4524 606 LSHMIKGALGTGILTMPHA---FKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPA 682 (929)
Q Consensus 606 ~~~l~~s~iG~GiLsLP~a---f~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~ 682 (929)
.+-.+.+++|+|.=+==-- |.+-|+. |....++++.+-..++....+..++.+. .+|.|.-+..+
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a------~~y~~~~~~v~----- 76 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA------TSYREILKYVS----- 76 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHh-----
Confidence 4556668999987653332 3355665 7888888888888899999888876654 48999999887
Q ss_pred ccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHH
Q psy4524 683 RFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSAT 762 (929)
Q Consensus 683 ~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~ 762 (929)
|++..++.|+.+.+.+++.++.-+.-.|..+.+.++- +.+.=.++....+....+.++.+.+-.+..+-+
T Consensus 77 -----~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l-----P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~ 146 (349)
T COG3949 77 -----GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL-----PYWIGALIIILLVLILLFLGRVEGIITVNGIIT 146 (349)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc-----cHHHHHHHHHHHHHHHHHHhcccceeeeheeHH
Confidence 7899999999999999999998888888787776532 223322444444455555666666655554333
Q ss_pred HH
Q psy4524 763 GV 764 (929)
Q Consensus 763 ~~ 764 (929)
-.
T Consensus 147 P~ 148 (349)
T COG3949 147 PF 148 (349)
T ss_pred HH
Confidence 33
|
|
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.16 Score=59.19 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=120.3
Q ss_pred CCHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCC---Cc------hHHHHHH
Q psy4524 667 LTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGV---TD------LRLYMLV 737 (929)
Q Consensus 667 ~sy~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~---~~------~~~~~~i 737 (929)
.++.-+.|..| |.+|..+..+...+..+|=...-....++.+..+++...+. .+ .....++
T Consensus 76 l~~~v~sR~~F----------G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i 145 (442)
T TIGR00800 76 LPFPVLSRASF----------GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFII 145 (442)
T ss_pred CCcchhhhhhh----------hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHH
Confidence 46778888887 78899999999999999999999999999998888876542 11 1122233
Q ss_pred HHHHHHhhhcccCchhhhhHHHHHHHHHHHHHhhhhheeccCC--CCCCCC----CCccCCCchhHHHHH-HHHhhcccc
Q psy4524 738 LFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILGDF--PSFSDR----TPVGHLSDLPLFVGV-TLFSLSSIG 810 (929)
Q Consensus 738 ~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~--~~~~~~----~~~~~~~~~~~~~g~-~~faf~~h~ 810 (929)
+..+.+++......+........+.......+....+...... .+..+. +.......+...++. ..+.-..-.
T Consensus 146 ~~~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~ 225 (442)
T TIGR00800 146 FWALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWAT 225 (442)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444333444444333322222222211111 110111 111111223333333 333344566
Q ss_pred cccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHh----cccccccc--cccccCCCChHHHHH------HH
Q psy4524 811 VTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLK----YGDEVQGS--ITLNLPQEDTLAVSV------KL 878 (929)
Q Consensus 811 ~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~----fG~~~~~~--il~n~~~~~~~~~i~------~~ 878 (929)
+.+...+.+|+|++-.+ ....++.........+|+.+-.. +|+...+. ....+... ...... ++
T Consensus 226 ~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~~ 301 (442)
T TIGR00800 226 NAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFGF 301 (442)
T ss_pred CchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHHH
Confidence 78888999998876555 56677777778888888777765 76543221 22222221 111111 12
Q ss_pred HHHHHH-HHHhccchhHHHHHHHhh
Q psy4524 879 LLSVSI-LFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 879 ~~~i~l-~~syPL~~~p~~~~i~~~ 902 (929)
+..+.. ...--.+.++..-.+.+.
T Consensus 302 ~~vl~~~~t~~~~N~ys~~l~l~~l 326 (442)
T TIGR00800 302 CFVVAQLSTNISANSYSAGLDIAAL 326 (442)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHh
Confidence 222222 245666777777777766
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.31 Score=57.73 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=38.8
Q ss_pred hhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy4524 296 LFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGF 347 (929)
Q Consensus 296 ~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 347 (929)
..+..++|+|.|-.......+|+|||+ +++| .+..+..++.++|.+..+
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence 344456889999999999999999995 6888 557777888888876443
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.5 Score=55.61 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 300 TVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 300 ~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
.+.|+|.|-.+.....+|+|||+ +.+| .+..+..++.++|++..+......+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45789999999999999999994 6888 6688899999999887665544444
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0023 Score=75.44 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS 356 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 356 (929)
+.++..++...+++|.|-......-+|.|||+ +.+| ....+.....++|.+.....=...|.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 55678888999999999999999999999995 5666 567888888888988776655555543
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.21 Score=58.83 Aligned_cols=56 Identities=14% Similarity=-0.012 Sum_probs=40.3
Q ss_pred hhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 296 LFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 296 ~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
.+.....|+|.|-......-+|+|||+ +.+| .+..+..+..++|.+.-+......+
T Consensus 217 ~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 217 VSGLMAAYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344567899999999999999999994 5787 5577777776666555444444333
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.37 Score=56.81 Aligned_cols=158 Identities=15% Similarity=0.063 Sum_probs=94.3
Q ss_pred CCCcchHHHHHHHHhhhhhh-hhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGT-GILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~-GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+..-... .......+.+..++..-..+.. ++.+..|..|.-++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--r~~~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLA-MIQVPTVWLSLGILGKKFAILA--RKYNAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHcCCccHHHHHHH
Confidence 46777888888887777666 56688877777776421111 1101111112222222111111 12345699999876
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
-|+ ++..+.+..+...+..++.....+...+..++.+++ ++....+++..++.........++...
T Consensus 117 Ryg---------~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl~av~ 182 (483)
T PRK09442 117 RYQ---------SRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----ISYETGLLIFGITVALYTAFGGFRAVV 182 (483)
T ss_pred HhC---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 442 245566666666666666666667777777776653 455555666666778888999999999
Q ss_pred hHHHHHHHHHHHHHhh
Q psy4524 756 PFSSSATGVMFVSLAI 771 (929)
Q Consensus 756 ~~S~~~~~~~~~~~ii 771 (929)
+...+=...++...++
T Consensus 183 ~TD~iQ~~i~~~~~~v 198 (483)
T PRK09442 183 LTDALQGIVMLVGTVI 198 (483)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887666655444333
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.19 Score=59.53 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHhhcccccccccccccCCCcc-cccchhHHHHHHHHHHHHHHHHHH
Q psy4524 798 FVGVTLFSLSSIGVTMPLENEMQHPRQ-FTARLGVLNVSSAINTTIFAAFGL 848 (929)
Q Consensus 798 ~~g~~~faf~~h~~i~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~ 848 (929)
.+....|+|.|-.......+|+|||+| ++| ++..+..++.++|.+..+
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence 444468999999999999999999963 555 888888888888876443
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.12 Score=61.19 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=43.7
Q ss_pred chhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHH
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGY 350 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 350 (929)
+..++....|+|.|-.......+|+|||+ +.+| .+..+...+.++|.+..++..
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999999999999995 6888 668888889999998755443
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.36 Score=54.97 Aligned_cols=267 Identities=15% Similarity=0.111 Sum_probs=145.7
Q ss_pred hHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCC
Q psy4524 602 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGP 681 (929)
Q Consensus 602 ~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~ 681 (929)
|....+++.+-..|+.... .++.-+++..++..++...-+-+...... + ...++.-+.|..|
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~---~Gl~~~v~sR~~F---- 68 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----D---TGLSAMGSLKLSL---- 68 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----c---cCcCHHHHHHHHH----
Confidence 4455566666666554321 44443444444433333322222222221 1 2357889999888
Q ss_pred cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHHHHH
Q psy4524 682 ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSA 761 (929)
Q Consensus 682 ~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~ 761 (929)
|++|.++..+...+...|=-.......++.+..+.+...+..+...+..+..++..+.+. ...+.++++..++
T Consensus 69 ------G~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~ 141 (386)
T TIGR02358 69 ------GSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVWLNNWS 141 (386)
T ss_pred ------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 788889999988899888888888888999999887654432333333443333343433 3556666666666
Q ss_pred HHHHHHHHhhhhheeccCCCCCCCCC-CccCCCchhHHHHHHH-HhhcccccccccccccCCCcccccchhHHHHHHHHH
Q psy4524 762 TGVMFVSLAITMYYILGDFPSFSDRT-PVGHLSDLPLFVGVTL-FSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAIN 839 (929)
Q Consensus 762 ~~~~~~~~iii~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~-faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~ 839 (929)
...+....+...+....+.. .++.. ...+ ..+...++... +.-......+...+..|+|+|.-. ....+..+.
T Consensus 142 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~---~~~~G~~i~ 216 (386)
T TIGR02358 142 VWLLLIATLWLLVVVFSKAD-LSELWNRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFL---GTVLGYFIG 216 (386)
T ss_pred HHHHHHHHHHHHHHHHhccc-hhhhcCCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceeh---HHHHHHHHH
Confidence 66655444433322221111 11110 1111 22222222211 111233447788888777765444 566677788
Q ss_pred HHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhh
Q psy4524 840 TTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 840 ~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~ 902 (929)
..+...+|...-.+.++. |...-+.+. .....+-+...++...+-..+.++.--.+.+.
T Consensus 217 ~~~~~~~G~~~~~a~~~~---d~~~~~~~~-g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 217 SCWMYFLGLAVTLATGQT---DIISILAGA-GLGIPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred HHHHHHHHHHHHHhcCCC---CHHHHHHhc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888777666543 222222211 11223445556666677788888888777777
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >KOG1286|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.23 Score=58.66 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=99.9
Q ss_pred CCCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcccccccccCCC
Q psy4524 290 NLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLNLPAG 368 (929)
Q Consensus 290 ~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~~~iL~~~~~~ 368 (929)
.+.++..++.+..|+|.|-..+-..-+|-|||+ ..++ ....++..++.+|++..+.-=+.-- ..++++..+.+..
T Consensus 230 gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vp-y~~~~L~~~~~~~ 305 (554)
T KOG1286|consen 230 GFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVP-YNDPRLDPGAALA 305 (554)
T ss_pred CcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEec-cCccccCCCCccc
Confidence 366778889999999999999999999999994 5677 6688999999999998776544321 1111111111111
Q ss_pred C---------hHHH---HHHHHHHHHHHHHhccchhHHHHHHHHhhhhhc--------cccChhhhHHHHHHHHHHHHHH
Q psy4524 369 D---------LLAQ---SVKVMLALAIFCTFALPQYIVYNIVWNCYLKTH--------MEKNSLATMWIYVLKTTICIIT 428 (929)
Q Consensus 369 ~---------~~~~---i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 428 (929)
+ .... +.+++.+++++.+.--.+++..+.++..- +++ .+++. +.+. ...+..+.+
T Consensus 306 spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA-~~G~~Pk~f~~v~~~g-~P~~---a~~v~~~~~ 380 (554)
T KOG1286|consen 306 SPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALA-KDGLAPKFFARVDRRG-VPLV---AVLVSGLFG 380 (554)
T ss_pred cHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHH-hcCCcchHHhhcCCCC-Cchh---HHHHHHHHH
Confidence 1 1122 66777777777766666788888877763 221 11111 1122 222222333
Q ss_pred HHHHHHc-----cchhHHHHHHhhhhhhhhhhcccchhhcccc
Q psy4524 429 FAFAIMI-----PNLELFISLIGSLCLPFMAIGLPALLRSTAV 466 (929)
Q Consensus 429 ~~iA~~i-----P~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~ 466 (929)
.+.++.. ..++.++++.|- ++.+.+.+=++.+++.|
T Consensus 381 ~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 381 ALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeee
Confidence 3333332 336888888664 45556666666666644
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.041 Score=61.75 Aligned_cols=343 Identities=11% Similarity=0.089 Sum_probs=167.6
Q ss_pred hcccccchhhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy4524 52 RNLKFLAPFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISF 131 (929)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~ 131 (929)
|-.+.|.=||++++++=+.|... .+..|--. ++.-.+.|++...=+..|+|.
T Consensus 18 RHIqlIAiGGaIGtGLFlGSg~~---------------------------I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm 69 (462)
T COG1113 18 RHIQLIAIGGAIGTGLFLGSGSA---------------------------IAMAGPSV-LLAYLIAGIFVFLIMRALGEM 69 (462)
T ss_pred HHHHHHHHhhhhhhhhhcccchh---------------------------hhhhCcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888777766553 23333211 223344555666667788877
Q ss_pred hcccccccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHH
Q psy4524 132 NGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVI 211 (929)
Q Consensus 132 ~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i 211 (929)
..+++... |+.+.++.. .|+..+ ++. ...-+..-...+.+=+.
T Consensus 70 -~~~~p~~g--SF~~~a~~~------lG~~Ag---------------------------f~t-gW~YW~~wv~v~~ae~t 112 (462)
T COG1113 70 -LVANPVSG--SFSDYARKY------LGPWAG---------------------------FLT-GWTYWFFWVLVGIAELT 112 (462)
T ss_pred -HHhCCCCC--cHHHHHHHH------hcchHH---------------------------HHH-HHHHHHHHHHHHHHHHH
Confidence 33444444 787777765 333332 000 00112222233344444
Q ss_pred HHHhhHHHHHHhhcCCCChhHHHHHHHHH--HHHhhcccCCChhh-HHHHHHHHHHHHHHhh--eeEE-EeeccC---CC
Q psy4524 212 FVAGNLKAVADQYYGDHDIRFYMLLIFFP--ILLLCWIRNLKLLA-PFSTLATAITIASFGI--TLYY-VFTDVP---SI 282 (929)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~i~~~~--~~pL~~~r~l~~L~-~~S~~~~~~i~~~v~~--vi~~-~~~~~~---~~ 282 (929)
.++..++.++++ ..+-++.++..++ ..=|...|-..++. |++.+=++.++..+++ .+.. ...... +.
T Consensus 113 Ai~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~ 188 (462)
T COG1113 113 AIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGF 188 (462)
T ss_pred HHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Confidence 555555555543 3233333333322 24455677777777 5566666555433333 2222 221111 11
Q ss_pred CC-----CCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCCCC-CCcccch--hhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 283 SE-----RNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPSK-FTSKLGV--LNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 283 ~~-----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~~-~~~~~~v--~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
++ .-.+.++.++..++-+.+|||.+...+=--.+|-|||+| .+|+... ..+...-...+.++..+.=+-.++
T Consensus 189 snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~ 268 (462)
T COG1113 189 SNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIG 268 (462)
T ss_pred cccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccC
Confidence 11 112345557778889999999998888888899999953 4453321 122223333344444444444444
Q ss_pred CCcccccccccCC-C-ChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhc-------cccChhhhHHHHHHHHHHH
Q psy4524 355 PSTSGSVTLNLPA-G-DLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTH-------MEKNSLATMWIYVLKTTIC 425 (929)
Q Consensus 355 ~~v~~~iL~~~~~-~-~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 425 (929)
++. ||.-..+.. + .....+.+..+..+...+.==-.+...+.++..--+.+ .+++.. .+.....+....
T Consensus 269 ~~~-SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gV-P~~ai~~s~~~~ 346 (462)
T COG1113 269 EDG-SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGV-PVNAILLSAVVL 346 (462)
T ss_pred CCC-CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCC-CHHHHHHHHHHH
Confidence 422 222222211 0 01111222222222223322223455566666531111 112221 233456677777
Q ss_pred HHHHHHHHHccchhHHHHHHhhhhhhhh--hhcccchhhccccc
Q psy4524 426 IITFAFAIMIPNLELFISLIGSLCLPFM--AIGLPALLRSTAVQ 467 (929)
Q Consensus 426 ~~~~~iA~~iP~~~~vl~lvGa~~~~~l--~fi~P~l~~l~~~~ 467 (929)
.++.++-...| +.++.++-+..+..+ ...+=.+.++|.++
T Consensus 347 ~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 347 LLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999 666666655544333 33344455666544
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.37 Score=54.88 Aligned_cols=242 Identities=14% Similarity=0.162 Sum_probs=110.9
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEe
Q psy4524 197 FLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVF 276 (929)
Q Consensus 197 ~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~ 276 (929)
...+.+.|-...-....++.++.+.+...+......++.+..++..+.+. .-.+.++++..++...+....+...+...
T Consensus 79 l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~ 157 (386)
T TIGR02358 79 LNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVF 157 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555667787888776543322233344444444444443 23456666666665555444433222111
Q ss_pred eccCCCCCCCCCCCCCcchhhhhHHH-hhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCC
Q psy4524 277 TDVPSISERNPGGNLKELPLFFGTVM-FSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGP 355 (929)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 355 (929)
.+....+....+.+ .++..+++... +.-......+...+..|+|+|-.+ ....+..+...+-.++|...-...|+
T Consensus 158 ~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 158 SKADLSELWNRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred hccchhhhcCCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11110000011111 22333332211 101223346777788777765544 44666777777788888777766654
Q ss_pred CcccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHH--
Q psy4524 356 STSGSVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAI-- 433 (929)
Q Consensus 356 ~v~~~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~-- 433 (929)
. |...-+...+ ....+-+...++...+-..+.++..-.+-+.. ++ .. ++++.++ ..+++.+++.
T Consensus 234 ~---d~~~~~~~~g-~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~-~~-~~-----~~~~~~i---~~ii~~~l~~~~ 299 (386)
T TIGR02358 234 T---DIISILAGAG-LGIPALLIILLSTVTTTFMDIYSAAISTGNLL-PR-LK-----VKHLAIG---VGVLGTLIALLF 299 (386)
T ss_pred C---CHHHHHHhcc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-Hh-hc-----chHHHHH---HHHHHHHHHHHH
Confidence 3 1111111100 11122233333334444555555554443332 21 11 1111111 1222223222
Q ss_pred HccchhHHHHHHhhhhhhhhhhcc
Q psy4524 434 MIPNLELFISLIGSLCLPFMAIGL 457 (929)
Q Consensus 434 ~iP~~~~vl~lvGa~~~~~l~fi~ 457 (929)
....+.+++++.|...+.+.+..+
T Consensus 300 ~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 300 PVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678888888888777666443
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.55 Score=55.36 Aligned_cols=154 Identities=17% Similarity=0.039 Sum_probs=102.8
Q ss_pred CCcchHHHHHHHHhhhhh-hhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALG-TGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG-~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
|+.+.+-.......+.++ .-.+++|-...+.|+..-....... ........++.+-..+.. ++++..|.+|.-++-
T Consensus 38 R~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~--~~~~~~T~~d~l~~R 114 (493)
T COG0591 38 RSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLA--KARGATTIPDFLEAR 114 (493)
T ss_pred CcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHh--cccCCccHHHHHHHH
Confidence 455566666777777776 7888999999999987433333321 233333333333332222 334567899988754
Q ss_pred hccCCccccccc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 677 LSEGPARFRWLA-PYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 677 f~~~~~~~~~~G-~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
|| ++.|.+..+...+..++-+...+...++.++..++ .+...-..+....+........+++..
T Consensus 115 ----------f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-----i~~~~~~~~~~~~v~~Yt~~gG~~av~ 179 (493)
T COG0591 115 ----------FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-----ISYVTGILIGALIVALYTFLGGLRAVV 179 (493)
T ss_pred ----------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 46 89999999999999999999988888888755543 344444555666677788888899988
Q ss_pred hHHHHHHHHHHHHH
Q psy4524 756 PFSSSATGVMFVSL 769 (929)
Q Consensus 756 ~~S~~~~~~~~~~~ 769 (929)
|...+=...+.++.
T Consensus 180 ~Td~iqg~im~i~~ 193 (493)
T COG0591 180 WTDFIQGLIMLIAL 193 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 88876555554333
|
|
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.81 Score=53.78 Aligned_cols=158 Identities=11% Similarity=0.057 Sum_probs=99.3
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
..|+.+++...+.+..+.+|++.+ +.|-...+.|+........ .....+.+..++.+-..... ++.+..|.+|.-+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~T~~e~l~ 114 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIIS--RKYNAITINDVLK 114 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHcCCccHHHHHH
Confidence 356788999999999988887654 7887777778642111111 01111222222222111111 2335568999887
Q ss_pred HHhccCCccccccc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 675 AALSEGPARFRWLA-PYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 675 ~~f~~~~~~~~~~G-~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
+-| | |..+.+..+...+.+++...+.+...+..++++++ ++....+++..++.........++.
T Consensus 115 ~Ry----------g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 115 ARY----------NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-----LSYLTALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred HHc----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 543 5 45577788888887777777777777777777653 4555666666667788888999999
Q ss_pred hhhHHHHHHHHHHHHHhh
Q psy4524 754 IVPFSSSATGVMFVSLAI 771 (929)
Q Consensus 754 l~~~S~~~~~~~~~~~ii 771 (929)
..+...+=...++...++
T Consensus 180 v~~td~iQ~~v~~~~~~~ 197 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTI 197 (471)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998887666555444333
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.36 Score=55.53 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=97.7
Q ss_pred CCCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++...+.+..+.+|++ .++.|....+.|+. +....+..........++..+..+ +.+..|..|.-++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI------NNGAYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HcCCCchhHHHHH
Confidence 356778888888877777654 55888888888864 322222222222333333333322 2345688888875
Q ss_pred HhccCCcccccccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 676 ALSEGPARFRWLAP-YGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 676 ~f~~~~~~~~~~G~-~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
-| |+ ..+.+..+...+..+......+...+..++.+++ ++...-+++..++.........++..
T Consensus 75 Ry----------g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-----i~~~~~~ii~~~i~~~Yt~~GG~~av 139 (407)
T TIGR00813 75 RF----------GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-----LDLYLSLLLLGAITILYTVFGGLKAV 139 (407)
T ss_pred Hh----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----chHHHHHHHHHHHHHHHHHHcchHHH
Confidence 43 55 6777777777788888888888888888877653 34555556666666778888999998
Q ss_pred hhHHHHHHHHHHHH
Q psy4524 755 VPFSSSATGVMFVS 768 (929)
Q Consensus 755 ~~~S~~~~~~~~~~ 768 (929)
.+...+=.+.++..
T Consensus 140 ~~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 140 VWTDTIQAVIMILG 153 (407)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887666655443
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.24 Score=57.60 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=72.7
Q ss_pred ccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHh----cCCCcccccc--cccCCCChHHHHHH---
Q psy4524 306 SAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLK----YGPSTSGSVT--LNLPAGDLLAQSVK--- 376 (929)
Q Consensus 306 ~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~----fG~~v~~~iL--~~~~~~~~~~~i~~--- 376 (929)
..-.+.+..-+.+|+|++-.+ ....+..........+|+.+-.. +|+...++.- ..+... .......
T Consensus 222 s~~~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~ 297 (442)
T TIGR00800 222 TWATNAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVF 297 (442)
T ss_pred HHHcCchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHH
Confidence 445678899999999876555 34666777777777777777655 7765433322 222211 1111111
Q ss_pred ---HHHHHHHH-HHhccchhHHHHHHHHhhhhhccccChhhhHHHH-HHHHHH--HHHHHHHHHHccchhHHHHHHhhhh
Q psy4524 377 ---VMLALAIF-CTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIY-VLKTTI--CIITFAFAIMIPNLELFISLIGSLC 449 (929)
Q Consensus 377 ---~~~~i~l~-~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~iA~~iP~~~~vl~lvGa~~ 449 (929)
++..+..+ ..-..+.++..-.+-..+ ++..+ .++. ++..++ .+..+.+.-+.+.+.+++++.|...
T Consensus 298 f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~-~~~~~------~~r~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~ 370 (442)
T TIGR00800 298 GFGFCFVVAQLSTNISANSYSAGLDIAALL-PKYIK------IKRGSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFL 370 (442)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHhC-cCccc------cchHHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHH
Confidence 12222222 233444555544433332 21111 1121 122211 1112222234556778999999998
Q ss_pred hhhhhhcccchh
Q psy4524 450 LPFMAIGLPALL 461 (929)
Q Consensus 450 ~~~l~fi~P~l~ 461 (929)
+.+.+..+==.+
T Consensus 371 ~P~~gI~l~Dy~ 382 (442)
T TIGR00800 371 SPIAGVMIADYF 382 (442)
T ss_pred HHHHHHHHhhee
Confidence 888776554433
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.4 Score=55.27 Aligned_cols=341 Identities=12% Similarity=0.114 Sum_probs=169.7
Q ss_pred hcccccchhhhhhhhHHHHHhhhhhhhhhccCCCcchhhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy4524 52 RNLKFLAPFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNLELFISF 131 (929)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgaGiLslP~af~~~G~v~gii~l~~~~~lt~ys~~lL~~~ 131 (929)
|-+..|.=||.++++.-++|- .+.++.|-...++.-++++.+....+..|+|.
T Consensus 49 RHl~MIAiGG~IGTGLfvgsG---------------------------~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEm 101 (541)
T COG0833 49 RHLQMIAIGGAIGTGLFVGSG---------------------------KALSQAGPAGLLIAYLIIGIMVYFVMQSLGEL 101 (541)
T ss_pred HHHHHHHhccccccceeeecc---------------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778877776655543 46688888888888889999988888888887
Q ss_pred hcccccccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhcccCCcccchhhhhHHHHHHhhh-hHHHHH
Q psy4524 132 NGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELG-ASCIYV 210 (929)
Q Consensus 132 ~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g-~~~~y~ 210 (929)
+-.- |..- ||..-+... .++ ++| +.+. -....++. ++-.=+
T Consensus 102 a~~~-P~sG--sF~~ya~rf------vdp-------------a~G---Fa~g-------------WnYw~~w~v~~~~El 143 (541)
T COG0833 102 AVFY-PVSG--SFSTYATRF------VDP-------------AFG---FALG-------------WNYWLNWAVTLPLEL 143 (541)
T ss_pred Hhhc-CCCC--chhhhhhhh------cCc-------------hHH---HHHH-------------HHHHHHHHHHhhHHH
Confidence 3211 1111 122222211 111 111 1000 00011111 111122
Q ss_pred HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhc--ccCCChhh-HHHHHHHHHHHHHHhh--eeEEEeeccCC-C--
Q psy4524 211 IFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCW--IRNLKLLA-PFSTLATAITIASFGI--TLYYVFTDVPS-I-- 282 (929)
Q Consensus 211 i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~--~r~l~~L~-~~S~~~~~~i~~~v~~--vi~~~~~~~~~-~-- 282 (929)
...+..++-+.++ ..+...|..++.++++.+.+ .|-..+-. |+|.+=++.++..++. ++..+....++ .
T Consensus 144 ~aa~~vi~yW~p~---~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~ 220 (541)
T COG0833 144 TAASLVIQYWFPD---TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGF 220 (541)
T ss_pred HHHHHhhhhhcCC---CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcce
Confidence 2333333333321 22455666655555544443 55555555 5566666655443333 22222221111 0
Q ss_pred ----CCCCCCCCCCcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCc
Q psy4524 283 ----SERNPGGNLKELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPST 357 (929)
Q Consensus 283 ----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v 357 (929)
++.....++.++...+-+..|+|.|...+---..|=+||+ ..||+. .-..-=..++|++.-++.=+.. +..
T Consensus 221 ~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi---k~vfwRIl~FYi~si~~ig~lv-Py~ 296 (541)
T COG0833 221 NYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI---KQVFWRILLFYILSIFVIGLLV-PYN 296 (541)
T ss_pred eeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH---HHHHHHHHHHHHHHHHHheEEc-cCC
Confidence 1112223344555666778899999988888889999994 567743 3333344455544322221111 222
Q ss_pred ccccc-------------cccCCC--ChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhc-------cccChhhhH
Q psy4524 358 SGSVT-------------LNLPAG--DLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTH-------MEKNSLATM 415 (929)
Q Consensus 358 ~~~iL-------------~~~~~~--~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~ 415 (929)
+++.+ .-+.+. .....+.+..++++++.+.==.++...+.++..--.++ .+++.. .+
T Consensus 297 dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~Gv-P~ 375 (541)
T COG0833 297 DPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGV-PL 375 (541)
T ss_pred CcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCC-ch
Confidence 22222 112111 12344556666666666655556778888877542211 122222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHcc--chhHHHHHHhhhhhhhhhhcccchhhccccc
Q psy4524 416 WIYVLKTTICIITFAFAIMIP--NLELFISLIGSLCLPFMAIGLPALLRSTAVQ 467 (929)
Q Consensus 416 ~~~~~~~~~~~~~~~iA~~iP--~~~~vl~lvGa~~~~~l~fi~P~l~~l~~~~ 467 (929)
....++..+.+++++-+..-. .++-++++.|-. ++++-+-=++.|++.|+
T Consensus 376 ~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 376 VALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 334556666666666666522 366777776643 22333334556666443
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.15 Score=57.94 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=90.8
Q ss_pred CCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-----HH
Q psy4524 598 KPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTY-----PE 671 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy-----~~ 671 (929)
++.|.+|+.+..+.+.+|+| ++++|.|.+..| -.+++.+-+.+++..-+.+..+-...+++++ ++..+| .+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~--~~~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER--DADGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee--CCCCCEecChHHH
Confidence 45899999999999999998 999999987777 4477777777777777777766666666532 222235 56
Q ss_pred HHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCc
Q psy4524 672 ILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNL 751 (929)
Q Consensus 672 l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 751 (929)
+-+... |||...+..++ .+..++.. -.+..+.+.+.++... ..+ .+...+...++.-+.....+
T Consensus 122 i~~gl~----------~k~lg~lfa~~-~i~~f~~~---~~~Q~nsi~~~~~~~~-~~~-~~v~~i~l~~l~~~vi~GGi 185 (425)
T TIGR00835 122 IKKGLG----------MRWLAVLFAVF-LIASFGIG---NMVQANAIASALSNAF-NVP-KLVTGIVLTVLTALIIFGGL 185 (425)
T ss_pred HHHHhC----------ccHHHHHHHHH-HHHHHhhh---HHHHHHHHHHHHHHHc-CCc-HHHHHHHHHHHHHHHHhcCc
Confidence 654332 57766666666 33333322 1222344444444211 222 23333333444444456677
Q ss_pred hhhhhHHHHHHHHH
Q psy4524 752 KYIVPFSSSATGVM 765 (929)
Q Consensus 752 ~~l~~~S~~~~~~~ 765 (929)
|.+..++..-+-.+
T Consensus 186 k~Ia~v~~~lvP~m 199 (425)
T TIGR00835 186 KRIAKISSVVVPFM 199 (425)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777776555554
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.7 Score=51.16 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=42.1
Q ss_pred HHHHhhcccccccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4524 801 VTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYG 855 (929)
Q Consensus 801 ~~~faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 855 (929)
...|+|.|-++.....+|+|||+| ..++++..+...+.++|.+..+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK--NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899999999999999999974 33349999999999999887665544443
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.4 Score=49.86 Aligned_cols=226 Identities=9% Similarity=0.053 Sum_probs=111.7
Q ss_pred CCHHHHHHHHhccCCcccccccchhHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhhhcC------------CCchHH
Q psy4524 667 LTYPEILGAALSEGPARFRWLAPYGRGLSFTAMI-VDEIGALCVYLLFIASNLSQVCVRFWG------------VTDLRL 733 (929)
Q Consensus 667 ~sy~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~-i~~~g~~~~y~i~~~~~l~~l~~~~~~------------~~~~~~ 733 (929)
.++.-+.|..| |.+|.++..+... +..+|=-.......++.+..+++...+ ..+...
T Consensus 89 l~~~v~sR~sF----------G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~ 158 (484)
T PRK11375 89 VPFAMILRASY----------GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPG 158 (484)
T ss_pred CChhHhHHHHH----------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHH
Confidence 57889999988 6777777777764 455666666666777777777655432 011112
Q ss_pred HH--HHHHHHHHhhhcccCchhhhhHHHHHHHHHHHHHhhhhheeccCC---CCCCCCCC-ccCCC--ch--hHHHHHHH
Q psy4524 734 YM--LVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYYILGDF---PSFSDRTP-VGHLS--DL--PLFVGVTL 803 (929)
Q Consensus 734 ~~--~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~---~~~~~~~~-~~~~~--~~--~~~~g~~~ 803 (929)
++ +++.++..++.+ ...+.+++++.++...+....+........+. +..+..+. ..... .+ ...+...+
T Consensus 159 ~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vi 237 (484)
T PRK11375 159 LITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVV 237 (484)
T ss_pred HHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHH
Confidence 22 233344455543 45566666666555555333322222221111 11111010 00001 11 12222222
Q ss_pred Hhhc-ccccccccccccCCCcccccchhHHHHHHHHHHHHHHHHHHHH----HHhcccccccccccccCC--CChHHHHH
Q psy4524 804 FSLS-SIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTIFAAFGLLA----YLKYGDEVQGSITLNLPQ--EDTLAVSV 876 (929)
Q Consensus 804 faf~-~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~g----Y~~fG~~~~~~il~n~~~--~~~~~~i~ 876 (929)
=++. ...+.|...+..|+|++-.+ ....+..+...+...+|+.. ...+|+.. .|...-+++ +.....++
T Consensus 238 g~~~~~~~~~~D~tRy~k~~~~~~~---~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~-~dp~~i~~~~~~~~~~~~a 313 (484)
T PRK11375 238 AVWAAPAVSASDFTQNAHSFRAQAL---GQTLGLVVAYILFAVASVCIIAGASIHYGADT-WNVLDIVQRWDSLFASFFA 313 (484)
T ss_pred HHHHHHHccccchhcccCChhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCHHHHHHHhcchHHHHHH
Confidence 2333 34478888888888775333 33344444444443344332 34555543 333322221 12333445
Q ss_pred HHHHHHHHHHHh-ccchhHHHHHHHhhhhhhcc
Q psy4524 877 KLLLSVSILFTF-ALPHFIVYDIVWNRYLKLRM 908 (929)
Q Consensus 877 ~~~~~i~l~~sy-PL~~~p~~~~i~~~~l~~~~ 908 (929)
-+...++...+- .-+++++--.+-+. +.++.
T Consensus 314 ~l~~v~a~~~tN~~~N~ys~~~~l~~l-~pk~i 345 (484)
T PRK11375 314 VLVILMTTISTNATGNIIPAGYQIAAL-APTKL 345 (484)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHh-CcCcc
Confidence 555566666663 45788887777777 55443
|
|
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.4 Score=52.19 Aligned_cols=153 Identities=9% Similarity=-0.041 Sum_probs=87.6
Q ss_pred CCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFT-TSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.|+.+++...+.+..+.+++..+ +.|-...+.|+.. . ...+...+. .....++..-. +...+.+.+..|-.|.-+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l-~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRL-RVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCceeHHHHHH
Confidence 46788888888888777777664 8998888888752 1 111111111 11112211111 111122334567788776
Q ss_pred HHhccCCcccccccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCc
Q psy4524 675 AALSEGPARFRWLAP---YGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNL 751 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~---~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 751 (929)
+=| |+ ..+.+..+...+..+.-+..-+...+..++.+++ ++....+++..++.........+
T Consensus 116 ~Ry----------~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 116 GRF----------EDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-----MSYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHh----------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhhH
Confidence 433 43 3444444444444444444444555556555542 45555566667778888999999
Q ss_pred hhhhhHHHHHHHHHHH
Q psy4524 752 KYIVPFSSSATGVMFV 767 (929)
Q Consensus 752 ~~l~~~S~~~~~~~~~ 767 (929)
+...|.-.+=.+.++.
T Consensus 181 ~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 181 LAVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888766655543
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=6.9 Score=46.14 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q psy4524 203 LGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITI 265 (929)
Q Consensus 203 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~ 265 (929)
++...+-+.-.+..++.+++ .+...-+++..+++.-.+..--++...|...+=.+.++
T Consensus 136 ~~~~~~ql~~~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~ 193 (483)
T PRK09442 136 FAAMTAQFIGGARLLETATG-----ISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIVML 193 (483)
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33333344455555665552 33333344444555556777777777777666544433
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=4.7 Score=46.13 Aligned_cols=255 Identities=15% Similarity=0.022 Sum_probs=131.4
Q ss_pred chhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhc--ccCCChhhHHHHHHHHHHHHH
Q psy4524 190 AIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCW--IRNLKLLAPFSTLATAITIAS 267 (929)
Q Consensus 190 ~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~--~r~l~~L~~~S~~~~~~i~~~ 267 (929)
..+.+ ....+.+.|-...-.+..++.... ..+.+..+++++..+++...+. .|-++.+...+..-....+..
T Consensus 96 s~l~s-ll~~~~~iGW~~v~~~l~~~a~~~-----~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~ 169 (442)
T COG1457 96 SILPS-LLNGITLIGWFGVNVILSGIAIGS-----GTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLY 169 (442)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHhcccccc-----CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 355666677666666666664111 1133445555555555554444 455555555544443333322
Q ss_pred HhheeEEEeeccCCCCCCCCCCCCCcchhhhhHH-HhhhccccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHH
Q psy4524 268 FGITLYYVFTDVPSISERNPGGNLKELPLFFGTV-MFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFG 346 (929)
Q Consensus 268 v~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g 346 (929)
.+..+... .+.++......+.++.++..+++.. .+.-...+-.....+-+|+|+. ++.......+......+-.+.|
T Consensus 170 l~~~~~~~-~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilG 247 (442)
T COG1457 170 LLALLFRS-KGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILG 247 (442)
T ss_pred HHHHHHhc-ccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 1122222223345555555555432 2222334555666777888774 3432245666667777778888
Q ss_pred hHHHHhcCCCc-ccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhhhccccChhhhHHHHHHHHHHH
Q psy4524 347 FFGYLKYGPST-SGSVTLNLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTIC 425 (929)
Q Consensus 347 ~~gY~~fG~~v-~~~iL~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (929)
...-..-|++- ..+....+.+ +...+.+...++.+.+--.+++...-.+-+.+.+ .+++.+.+.....
T Consensus 248 a~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~-------l~k~~~~v~~~v~- 316 (442)
T COG1457 248 AALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK-------LSKVTRVVIAGVG- 316 (442)
T ss_pred HHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHH-
Confidence 88888887765 3333333321 4455566666666666677777766554433311 1222222222211
Q ss_pred HHHHHHHH----HccchhHHHHHHhhhhhhhhhhcccchhhcc
Q psy4524 426 IITFAFAI----MIPNLELFISLIGSLCLPFMAIGLPALLRST 464 (929)
Q Consensus 426 ~~~~~iA~----~iP~~~~vl~lvGa~~~~~l~fi~P~l~~l~ 464 (929)
+.+++|. +.-+++.++.++|+....+....+--.+..|
T Consensus 317 -igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 317 -IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 4568889999999888777776655555444
|
|
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.36 Score=55.54 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred CCCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++...+.+..+.+|++ .++.|-...+.|+. +....+...........++.+-.+ +.+..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r------~~~~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLR------RSGAVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHH------HTT--SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhc------ccchhhhhhhhhh
Confidence 467788888888888888764 66889888888886 333333333333344444444332 2345688888875
Q ss_pred HhccCCcccccccchh--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 676 ALSEGPARFRWLAPYG--RGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~--~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
- ||+.. +.+..+...+.........+...+..++.+++ ++....+++..++.........++.
T Consensus 78 R----------yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----i~~~~~~~i~~~i~~iYt~~GGl~a 142 (406)
T PF00474_consen 78 R----------YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----IPYNTAILIVGVIVIIYTFFGGLRA 142 (406)
T ss_dssp H----------T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTTCTT----
T ss_pred h----------cCCchhhhhhcccccchhhhhhhhccccccccchhhccc-----hhhhHHHHHHHHHHHHhhhhhhHhh
Confidence 4 46666 56555555666666666677777776666543 4556666667777778889999999
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q psy4524 754 IVPFSSSATGVMFVSLAITM 773 (929)
Q Consensus 754 l~~~S~~~~~~~~~~~iii~ 773 (929)
..+...+=.+.+++..+++.
T Consensus 143 v~~td~iQ~~i~~~~~~~~~ 162 (406)
T PF00474_consen 143 VAWTDFIQGVIMIIGAIVVL 162 (406)
T ss_dssp --SHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 88888766665544443333
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.5 Score=48.46 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=122.1
Q ss_pred CcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q psy4524 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 678 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~ 678 (929)
.++.+...-|=..++-|+|.+-=|-.-.+-||+++.+.+++-+.+.----....-.. +-+.+..|.+|++++..
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~-----SvR~~G~Si~~i~~~~l- 124 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA-----SVRHKGKSIGEIAGKYL- 124 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh-----hhcCCCccHHHHHHHHH-
Confidence 456677788889999999999999888999999999888776554432222222221 12334469999998776
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHH
Q psy4524 679 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFS 758 (929)
Q Consensus 679 ~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S 758 (929)
||+++.+..+...+.+.....++....++.+.+.-.. ....++.+...+.+-+...|+=-++...+
T Consensus 125 ---------G~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~-----~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t 190 (376)
T PF02554_consen 125 ---------GKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSPWA-----ATSSLLFIPIAILFGLLVYKRGGNLGPAT 190 (376)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH-----HHHHHHHHHHHHHHhHhheecCCchHhhH
Confidence 8999999999999999999998888888876442211 12223333333333333434444456677
Q ss_pred HHHHHHHHHHHhhhhheeccCCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCccc
Q psy4524 759 SSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQF 825 (929)
Q Consensus 759 ~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~ 825 (929)
.+++..++.++..-...-... .+ ....-.+++.|..-..+.|+-.=+. |+++
T Consensus 191 ~i~vvll~~~v~~G~~~p~~~----------~~----~~~W~~ii~~Y~~iAs~lPVw~Llq-prdy 242 (376)
T PF02554_consen 191 IIGVVLLLLAVWLGMYFPISL----------LS----VTTWIIIIFIYYFIASVLPVWKLLQ-PRDY 242 (376)
T ss_pred HHHHHHHHHHHHhhhhccccc----------Cc----HHHHHHHHHHHHHHHHHhhHHHHhC-chHH
Confidence 777766655544322111110 00 1233346778877888888877555 5543
|
This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane |
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=4.9 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=16.4
Q ss_pred hhHHHHHHhhhhhhhhhhcccc
Q psy4524 438 LELFISLIGSLCLPFMAIGLPA 459 (929)
Q Consensus 438 ~~~vl~lvGa~~~~~l~fi~P~ 459 (929)
|.+++++.|++.+...+..+==
T Consensus 373 f~~FL~~lg~~l~Pi~gImi~D 394 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMMAH 394 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888777654443
|
|
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=8.8 Score=45.98 Aligned_cols=52 Identities=2% Similarity=0.006 Sum_probs=27.9
Q ss_pred HHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q psy4524 209 YVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITI 265 (929)
Q Consensus 209 y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~ 265 (929)
-+.-.+..++.++ +.+...-+++..+++...+..-=++...|...+=.+.++
T Consensus 164 q~~g~g~il~~l~-----gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T PRK12488 164 QMVGAGKLIELLF-----GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 3344455555554 233333344455555556667777777777766544443
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.7 Score=49.66 Aligned_cols=207 Identities=10% Similarity=-0.015 Sum_probs=123.0
Q ss_pred cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHHHHHHHHH
Q psy4524 686 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVM 765 (929)
Q Consensus 686 ~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~ 765 (929)
.+|.+|.++..+.+.+.++|-...-.+..++...+. ...+..+++++..+++...+.. ..|.+.+++..++...
T Consensus 90 ~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-----~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~a~~~~ 163 (442)
T COG1457 90 PFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-----TGLPVWAGILIIGVLMTLVTIF-GYRALHKLERIAVPLL 163 (442)
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----CCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 348999999999999999999998888888861111 1445556666665555544443 3444444444444444
Q ss_pred HHHHhhhhheeccC--CCCCCCCCCccCCCchhHHHHHHH-HhhcccccccccccccCCCcccccchhHHHHHHHHHHHH
Q psy4524 766 FVSLAITMYYILGD--FPSFSDRTPVGHLSDLPLFVGVTL-FSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTI 842 (929)
Q Consensus 766 ~~~~iii~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~-faf~~h~~i~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~ 842 (929)
...+....+....+ .++-...+.+.++.++..+++... +.-..-.-.....+-+++|+. ++.......+......+
T Consensus 164 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~ 242 (442)
T COG1457 164 LLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSF 242 (442)
T ss_pred HHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHH
Confidence 44444333333332 122222222344455555444422 222233444566667777774 44222445555666677
Q ss_pred HHHHHHHHHHhccccc-ccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhh
Q psy4524 843 FAAFGLLAYLKYGDEV-QGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 843 Y~~~g~~gY~~fG~~~-~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~ 902 (929)
-.++|...-.+=|+.. ..++...+. .+...+.+...++...+--.++|+..-.+.+.
T Consensus 243 ~~ilGa~~a~a~g~~~~~~~~~~~~G---~~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i 300 (442)
T COG1457 243 MMILGAALAAAAGNADSIADVMLGLG---GFGLPAILILVLGTVTTNANNLYSAGLSFANI 300 (442)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHhcc---cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 7777887777777665 333333332 26777888888888899889999888777777
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=5.5 Score=45.70 Aligned_cols=212 Identities=12% Similarity=0.088 Sum_probs=100.4
Q ss_pred CCHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhh
Q psy4524 667 LTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLIS 746 (929)
Q Consensus 667 ~sy~~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~ 746 (929)
.++.-+.|..| |.+|.++..+...+...|=........++.+++..+ .+.....++..++..+..
T Consensus 71 ~~~~v~sR~~F----------G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-----~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 71 LSTHLLARFSF----------GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-----LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred cCHHHHHHHHh----------chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHH
Confidence 57999999888 788888888777777766555555555665555432 222234444444444444
Q ss_pred cccCchhhhhHHHHHHHHHHHHHhhhhheeccCCCCCC---CCCCccCCCchhHHHHH-HHHhhcccccccccccccCCC
Q psy4524 747 WVPNLKYIVPFSSSATGVMFVSLAITMYYILGDFPSFS---DRTPVGHLSDLPLFVGV-TLFSLSSIGVTMPLENEMQHP 822 (929)
Q Consensus 747 ~~~~l~~l~~~S~~~~~~~~~~~iii~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~-~~faf~~h~~i~~i~~~m~~p 822 (929)
.. ..+.+.+++.++........+...+....+....+ +.+. .+...+...+.. ...--..-.+.+...+..|+|
T Consensus 136 ~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~ 213 (404)
T PRK11017 136 YF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVP-AEPLDFSAALTLVVGSFISGGTLTADFVRFGRSA 213 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCC-CCcccHHHHHHHHHHHHHHhHhcCCChHhhccCc
Confidence 32 13334444444433333222222222211111111 1111 112234444443 222334456778888887776
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCChHHHHHHHHHHHHHHHHhccchhHHHHHHHhh
Q psy4524 823 RQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIVYDIVWNR 902 (929)
Q Consensus 823 ~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~~~~~i~l~~syPL~~~p~~~~i~~~ 902 (929)
++--. ....++.+...+...+|...-...|+. |+......+ ......-+...++...+--.+++...-...+.
T Consensus 214 ~~~~~---~~~lg~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~~-~~~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l 286 (404)
T PRK11017 214 KIAVL---ATMVAFFLGNSLMFIFGAAGAAVYGQA---DISDVMIAQ-GLLIPAIVMLGLNIWTTNDNALYASGLGFCNI 286 (404)
T ss_pred cceee---hhHHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHh-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 64222 344555555666666666655555542 222222211 12222333444444444445554444443433
|
|
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.8 Score=48.37 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. ........+.......++.+-.++..+ .+.+..|-.|.-+.
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHHHH
Confidence 356778888888888777654 567887777778752 222222222222333334332222221 13355677887764
Q ss_pred HhccCCcccccccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCch
Q psy4524 676 ALSEGPARFRWLAP---YGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLK 752 (929)
Q Consensus 676 ~f~~~~~~~~~~G~---~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 752 (929)
= ||+ ..+.+..+...+....-...-+...+..++.+++ ++....+++..++.........++
T Consensus 113 R----------yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-----i~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 113 R----------FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-----LDYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred H----------hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 3 353 3343444444444444444445555666555542 455555666667778888889999
Q ss_pred hhhhHHHHHHHHHHH
Q psy4524 753 YIVPFSSSATGVMFV 767 (929)
Q Consensus 753 ~l~~~S~~~~~~~~~ 767 (929)
...+...+=.+.++.
T Consensus 178 av~~TD~iQ~~i~~~ 192 (487)
T TIGR02121 178 AVSWTDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988887765555543
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=6.5 Score=46.57 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=24.8
Q ss_pred HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q psy4524 212 FVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAI 263 (929)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~ 263 (929)
..+..++.+++ .+...-+++..+++...+..-=++...|...+=.+.
T Consensus 147 ~~~~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~i 193 (502)
T PRK15419 147 AGARLFESTFG-----MSYETALWAGAAATILYTFIGGFLAVSWTDTVQASL 193 (502)
T ss_pred HHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555442 333333444455555566666667777766554443
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=94.36 E-value=12 Score=44.95 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHccc--hhHHHHHHhhhhhhhhhhcccchh
Q psy4524 419 VLKTTICIITFAFAIMIPN--LELFISLIGSLCLPFMAIGLPALL 461 (929)
Q Consensus 419 ~~~~~~~~~~~~iA~~iP~--~~~vl~lvGa~~~~~l~fi~P~l~ 461 (929)
+....+.+++.++|...|+ +..++++..++.++. .+|.++
T Consensus 407 i~~vv~g~ia~~~a~~~~~~~i~~l~~~~~~~~a~~---~~p~ll 448 (549)
T TIGR02711 407 ITVLILGVIAIGLGILFENQNIAFMVGLAFSIAASC---NFPIIL 448 (549)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HHHHHH
Confidence 4444556677788877665 444555544444433 456543
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=14 Score=43.67 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=68.6
Q ss_pred hhhhccchhhhhhhhHHHHHHHHHH---HHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhh
Q psy4524 92 VAELKELPLFFGTVMFSMSAIGIVI---LCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLK 168 (929)
Q Consensus 92 gaGiLslP~af~~~G~v~gii~l~~---~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~ 168 (929)
|--.+++|......|+..-.+.+.. ..+.-.+-..-+.+.+ ++....|.+|.-+.=
T Consensus 56 ~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~----~~~~~~T~~d~l~~R----------------- 114 (493)
T COG0591 56 GWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA----KARGATTIPDFLEAR----------------- 114 (493)
T ss_pred HHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCccHHHHHHHH-----------------
Confidence 4778999999999998866555543 2222223333333332 222223666665541
Q ss_pred hhhhhhccchhhhcccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhccc
Q psy4524 169 NILVILIGLVGFVTGLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIR 248 (929)
Q Consensus 169 ~~~~~~fg~lg~~~~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r 248 (929)
|+ + +..+.+.. .+..+..+.-+..-+...++.++..++ .+...-..+..+++..-+..-
T Consensus 115 ------f~--------s-~~lr~l~a-li~iv~~i~yia~ql~~~~~~~~~~~g-----i~~~~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 115 ------FG--------S-KILRILSA-LIIIVFFIPYIALQLVAGGLLLSLLFG-----ISYVTGILIGALIVALYTFLG 173 (493)
T ss_pred ------cC--------C-hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCHHHHHHHHHHHHHHHHHHc
Confidence 11 1 22233333 345555566666666666666644442 233333334445555566666
Q ss_pred CCChhhHHHHHHHHHH
Q psy4524 249 NLKLLAPFSTLATAIT 264 (929)
Q Consensus 249 ~l~~L~~~S~~~~~~i 264 (929)
-++...|...+=-..+
T Consensus 174 G~~av~~Td~iqg~im 189 (493)
T COG0591 174 GLRAVVWTDFIQGLIM 189 (493)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7777777766544433
|
|
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.7 Score=49.17 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=96.8
Q ss_pred CCCcchHHHHHHHHhhhhhhhh-chhHHHHhhcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGI-LTMPHAFKDSGYLLGFLGTVAIGAFTTSC-IQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~Gi-LsLP~af~~~G~~~gii~l~~~~~~s~~t-~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.|+.+++...+.+..+.++++. ++.|-...+.|+- +....+ ...+.+.- ..++.+ +.+ +....|.+|.-+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a~---~lr---~~g~~T~~d~l~ 137 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYAL-GVLAGWPIILFLIAE---RLR---NLGKYTFADVVS 137 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHH-HHHHHHHHHHHHHHH---HHH---HCCCcchHHHHH
Confidence 3577888888888888777665 6899888888874 222211 11112111 122222 222 123368888876
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+=| .+|..|.+..+...+..+.-....+...+..++.+++ ++...-+++..++.........++..
T Consensus 138 ~Rf---------~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-----i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 138 YRL---------AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-----ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHc---------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 433 2466888888777777777677777777777766643 45555566666777888889999999
Q ss_pred hhHHHHHHHHHHHHHhh
Q psy4524 755 VPFSSSATGVMFVSLAI 771 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~ii 771 (929)
.|...+=.+.++...++
T Consensus 204 ~~td~iQ~~im~~~~i~ 220 (549)
T PRK12488 204 TWVQIIKAVLLLSGTSF 220 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98887766555444433
|
|
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=94.11 E-value=11 Score=43.45 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHH
Q psy4524 199 VVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIA 266 (929)
Q Consensus 199 ~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~ 266 (929)
.+..+.....-+...+..++.+++ .+...-+++..++++-.+..--++...|...+=.+.++.
T Consensus 90 i~~~~~~~~~q~~g~~~il~~~~g-----i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~ 152 (407)
T TIGR00813 90 ILYIFLYMSVDLFSGALLIELITG-----LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 344444455555555666666552 333333444445555566677777777777666554443
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=93.89 E-value=11 Score=45.16 Aligned_cols=150 Identities=10% Similarity=0.028 Sum_probs=89.9
Q ss_pred CCCcchHHHHHHHHhhhhhh-hhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGT-GILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~-GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++...+.+..+.+++ ..++.|-...+.|+. +................++.+-.++ .+..|-.|.-++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr------~~~~T~~e~l~~ 103 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRK------FGKYTVPDFIGD 103 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH------CCCccHHHHHHH
Confidence 46788898888888887755 566888777777764 2222211111111223344433322 234577777654
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
=|+ +|..+.+..+...+..+.-....+...+..++.+++ ++...-+++..++.........++...
T Consensus 104 Rf~---------s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-----i~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 104 RYY---------SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-----VDFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred HhC---------CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 331 244566666666666666566666666666666553 455555566666777888889999988
Q ss_pred hHHHHHHHHHHH
Q psy4524 756 PFSSSATGVMFV 767 (929)
Q Consensus 756 ~~S~~~~~~~~~ 767 (929)
|.-.+=.+.+++
T Consensus 170 ~TD~iQ~iim~i 181 (552)
T TIGR03648 170 WTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHH
Confidence 887765544443
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.21 Score=58.13 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=61.2
Q ss_pred CCcchHHHHHHHHhhhhhhhhchhHHHHh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTGILTMPHAFK--DSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiLsLP~af~--~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
|+.+.++-........+....+.+-.... ..++.-+++.+++..++...-..+..... .+ ...++..++|.
T Consensus 7 R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G----~r---~Gl~~~v~sR~ 79 (440)
T PF02133_consen 7 RTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG----PR---TGLPTMVLSRA 79 (440)
T ss_dssp --B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH----HC---C---HHHHTTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc----cc---cCCCchhcchh
Confidence 44445555444444444444443333322 23334344444444443333333333322 12 22467777776
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFW 726 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~ 726 (929)
.| |.+|..+..+...+...|-...-....++.+..+.+...
T Consensus 80 ~F----------G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 80 SF----------GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp TS-----------TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 66 888999999999999999888888899999999988753
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=93.72 E-value=18 Score=42.46 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q psy4524 198 LVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITI 265 (929)
Q Consensus 198 i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~ 265 (929)
..+..++...+-+.-.+..++.+++ .+...-+++..+++.-.+..--++...|...+=.+.++
T Consensus 130 ~i~~~~~~~~~ql~g~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~ 192 (471)
T TIGR02119 130 LLVFFFSAMVAQFIGGARLIESLTG-----LSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVMF 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334444444444445555665552 33333444445555556777777788777766554433
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.8 Score=49.84 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhh
Q psy4524 203 LGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGI 270 (929)
Q Consensus 203 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~ 270 (929)
.......+...+..++.++ +.+....+++..+++...+..--++...+...+=.+.++...++
T Consensus 98 ~~~~~~q~~~~~~~~~~~~-----gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~ 160 (406)
T PF00474_consen 98 IPYLAAQLVGGGALLSVLF-----GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIV 160 (406)
T ss_dssp HTHHHHHHHHHHHHHHHHT-----T--HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccchhhcc-----chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHH
Confidence 3334444455555555554 23445555555556666777777888888776666554444433
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=7.1 Score=46.84 Aligned_cols=149 Identities=9% Similarity=0.032 Sum_probs=89.8
Q ss_pred CCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
|+.+++...+.+..+.+|++ .++.|-...+.|+. +....+...+.......++.+ +.+ +.+..|+.|.-+.
T Consensus 69 r~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~---~~r---~~g~~T~~d~l~~- 140 (551)
T PRK09395 69 GGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAE---RLR---NLGKYTFADVASY- 140 (551)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHH---HHh---hCCCccHHHHHHH-
Confidence 56777777777777777654 56999888888874 222221111111111222222 222 2344688888764
Q ss_pred hccCCccccccc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 677 LSEGPARFRWLA-PYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 677 f~~~~~~~~~~G-~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
+|| |..|.+..+...+..+....+.+.-.+..++.+++ ++...-+++..++.........++...
T Consensus 141 ---------Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-----i~~~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 141 ---------RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-----LNYHVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred ---------HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 335 56777777766665555555556666666665542 455666667777778888889999988
Q ss_pred hHHHHHHHHHHHH
Q psy4524 756 PFSSSATGVMFVS 768 (929)
Q Consensus 756 ~~S~~~~~~~~~~ 768 (929)
|...+=.+.++..
T Consensus 207 ~TD~iQ~iim~~g 219 (551)
T PRK09395 207 WVQIIKAVLLLSG 219 (551)
T ss_pred HHHHHHHHHHHHH
Confidence 8877555544433
|
|
| >KOG1289|consensus | Back alignment and domain information |
|---|
Probab=93.25 E-value=4.4 Score=46.93 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=82.6
Q ss_pred cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHhhhccc--CchhhhhHHHHH
Q psy4524 686 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG--VTDLRLYMLVLFPPLLLISWVP--NLKYIVPFSSSA 761 (929)
Q Consensus 686 ~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~pl~~~~--~l~~l~~~S~~~ 761 (929)
.+|+...+++.....+.+.-...+----.++.+.....-..+ ..+......+...+.+..+++. .-|.+++++.++
T Consensus 127 k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~ 206 (550)
T KOG1289|consen 127 KYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVS 206 (550)
T ss_pred chhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 346666677666555554433333333334444333333333 1111112222222222233322 235666777777
Q ss_pred HHHHHHHHhhhhheecc---CCCCCC-C------CCCccCCC--chhHHHH--HHHHhhcccccccccccccCCCccccc
Q psy4524 762 TGVMFVSLAITMYYILG---DFPSFS-D------RTPVGHLS--DLPLFVG--VTLFSLSSIGVTMPLENEMQHPRQFTA 827 (929)
Q Consensus 762 ~~~~~~~~iii~~~~~~---~~~~~~-~------~~~~~~~~--~~~~~~g--~~~faf~~h~~i~~i~~~m~~p~~~~~ 827 (929)
+...++.+++.++.... +..++. + .....+|+ ++.-.+| .....+.|-.....+.+|-||+++ +
T Consensus 207 ~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk--~ 284 (550)
T KOG1289|consen 207 VYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK--A 284 (550)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhh--h
Confidence 66665554444433221 111111 1 11112222 2222222 245566677788888999999863 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQ 859 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~ 859 (929)
.++.+..+..+..++=..+-+.-..+-+++.+
T Consensus 285 aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 285 APRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 33477777777777666666655666665433
|
|
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.94 E-value=7.5 Score=42.24 Aligned_cols=81 Identities=10% Similarity=0.176 Sum_probs=49.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCChHHHHHhhhhccccCCCcchhhhhhhhhhhhccchhhhc
Q psy4524 103 GTVMFSMSAIGIVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVILIGLVGFVT 182 (929)
Q Consensus 103 ~~~G~v~gii~l~~~~~lt~ys~~lL~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~fg~lg~~~ 182 (929)
..-|+- |+.-+++.+++-+.++.++.+.+++-+.+ +|+|.-+.. .|+.+.
T Consensus 32 ~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~----~y~~~~~~v------~~~~~~------------------- 81 (349)
T COG3949 32 GKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNAT----SYREILKYV------SGPKFA------------------- 81 (349)
T ss_pred HHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHH------hhHHHH-------------------
Confidence 333443 45556666666677777777776666544 889988876 222222
Q ss_pred ccCCcccchhhhhHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q psy4524 183 GLNASVSAIIVSFGFLVVCELGASCIYVIFVAGNLKAVAD 222 (929)
Q Consensus 183 ~g~~~~~~~~v~~~~i~~~~~g~~~~y~i~~~~~l~~l~~ 222 (929)
.+. ++.+.++.++.++.-+--.|..+++.++
T Consensus 82 --------ki~-d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 82 --------KII-DIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred --------HHH-HHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 233 3467777788887765555556666653
|
|
| >KOG1289|consensus | Back alignment and domain information |
|---|
Probab=92.27 E-value=24 Score=41.21 Aligned_cols=62 Identities=10% Similarity=-0.096 Sum_probs=42.1
Q ss_pred chhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCCcc
Q psy4524 294 LPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTS 358 (929)
Q Consensus 294 ~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~v~ 358 (929)
+..++-.-+.++.|-...+.+.+|-||++ +-+| .+..+..++.++=..+-+.--+.-++|.+
T Consensus 254 fil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPr---gIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 254 FILGFFNPAWTMSGYDAAAHMAEETKNASKAAPR---GIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred HHHhhccceeEEeccCchHHHHHHhcchhhhccH---HHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 34455556667778888899999999995 4555 55666666666666665555666665433
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=92.27 E-value=17 Score=43.66 Aligned_cols=149 Identities=9% Similarity=0.024 Sum_probs=88.6
Q ss_pred CCCcchHHHHHHHHhhhhh-hhhchhHHHHhhcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALG-TGILTMPHAFKDSGYLLGFLGTVAIGAFTT-SCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG-~GiLsLP~af~~~G~~~gii~l~~~~~~s~-~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
.|+.+++...+.+..+.++ ...++.|-...+.|+- +....+. ..+.+ ....++.+ +.++ ....|.+|.-+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~---~lrr---~g~~T~~d~l~ 137 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAE---RLRN---LGRYTFADVAS 137 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHH---HHHH---cCCccHHHHHH
Confidence 3566777777777777555 5677999877777864 3222211 11111 12223333 2221 23368888876
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+=| -+|..|.+..+...+.++.-....+.-.+..++.+++ ++...-+++..++.........++..
T Consensus 138 ~Rf---------~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-----i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T TIGR02711 138 YRL---------KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-----LNYHVAVVLVGILMVMYVLFGGMLAT 203 (549)
T ss_pred HHc---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 433 2456677766666666665556666666666666543 34555556666677778888899888
Q ss_pred hhHHHHHHHHHHH
Q psy4524 755 VPFSSSATGVMFV 767 (929)
Q Consensus 755 ~~~S~~~~~~~~~ 767 (929)
.|...+=.+.++.
T Consensus 204 ~~td~iQ~~im~~ 216 (549)
T TIGR02711 204 TWVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 8887755544433
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.53 E-value=7.9 Score=44.90 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=113.6
Q ss_pred CcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q psy4524 599 PLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 678 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~ 678 (929)
.++.+-..-|=..++-|+|.+-=|---+|.||.+|.+.+++-..+.----..++-.. +.+++..|-+|++++-+
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~-----SvR~~G~Si~~ia~~~l- 124 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLML-----SVRHGGKSIGEIAGKYL- 124 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheee-----eeccCCccHHHHHHHHh-
Confidence 456677777888899999999999999999999999988776554432222222111 22344569999998766
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhhhHH
Q psy4524 679 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIVPFS 758 (929)
Q Consensus 679 ~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S 758 (929)
|+..+.+..+...+..+-...++.......+.+.-.. ..+....+-+....-+-+-.+| .++.-.|
T Consensus 125 ---------G~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~~~p~~---~f~v~~tipiA~~~G~~~~~~r--g~~~~~s 190 (575)
T COG1966 125 ---------GRTAKVFFLLLALILLILVGAVFAAVIAKLLANSPWG---VFTVFLTIPLAVLMGIYLYRLR--GNMGISS 190 (575)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHHHHHHHHHHHHhc--ccccccc
Confidence 8999999888888777766666665555554322111 0111111111111113333333 4555666
Q ss_pred HHHHHHHHHHHhhhhheeccCCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCccc
Q psy4524 759 SSATGVMFVSLAITMYYILGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQF 825 (929)
Q Consensus 759 ~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~~ 825 (929)
.++...+..++..--+. + . ..++ ...+.-....-++.+.|..-..+.|+-.=+. |+|+
T Consensus 191 iig~~ll~~ai~~g~~v-----~-~-~~~~-~~~~~~~~~w~ii~~~Y~fiAsvLPVW~LL~-PRdy 248 (575)
T COG1966 191 VIGLALLILAIYLGSVV-----P-I-DAPI-FTGSLVILVWIIILFIYAFIASVLPVWLLLQ-PRDY 248 (575)
T ss_pred hHHHHHHHHHHHhcccc-----c-c-cccc-ccccchhHHHHHHHHHHHHHHHHhHHHHHhC-cchH
Confidence 66666655444322111 1 1 1111 1223333444556667777777778776555 5553
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=41.44 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred cchhhhhh-hccCCCCCCcccchh-hhHHHHHHHHHHHHHhHHH
Q psy4524 309 GIIMPLEN-EMRSPSKFTSKLGVL-NVAMLSIALIYTGFGFFGY 350 (929)
Q Consensus 309 ~~~~~i~~-eMk~p~~~~~~~~v~-~~s~~~~~~~Y~~~g~~gY 350 (929)
..+-.+.+ |+|||++-.|..... .++......+|.-.+..|-
T Consensus 198 iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 198 IVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555 999996554422111 2244445556665555554
|
transmembrane helical spanners. |
| >PRK15015 carbon starvation protein A; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=3.5 Score=48.73 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred hHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCC
Q psy4524 602 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGP 681 (929)
Q Consensus 602 ~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~ 681 (929)
.+--.-|=..++-|+|.+-=|---.+.||.++.+.+++-..+.----....-.. +.+++..|.+|++++-.
T Consensus 85 k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~-----S~R~~GrSig~ia~~~i---- 155 (701)
T PRK15015 85 KKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV-----STRRDGRSLGELVKEEM---- 155 (701)
T ss_pred ccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee-----eecCCCccHHHHHHHHh----
Confidence 344455777899999999999998899999999988876554332222221111 23344569999998766
Q ss_pred cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4524 682 ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 718 (929)
Q Consensus 682 ~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l 718 (929)
|++++.+..+.+.+.+.-...++-.++.+.+
T Consensus 156 ------G~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 156 ------GPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988888888877777777777665
|
|
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=45 Score=39.76 Aligned_cols=154 Identities=10% Similarity=-0.020 Sum_probs=79.1
Q ss_pred CCCcchHHHHHHHHhhhhhhhh-chhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGI-LTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~Gi-LsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
.|+.+++-..+.+..+.++++. ++.|-...+.|+.... ..............++..- .. +.+..|-+|.-++
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~---~~---r~~~~T~~e~l~~ 109 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPR---YL---KSGITTIPDFLEE 109 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHH---HH---hcCCccHHHHHHH
Confidence 4678888888888887766554 5888777777864211 1111111111222222221 11 2345688888764
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHhh--hcCCCchHHHH----HHHHHHHHhhhcc
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLL-FIASNLSQVCVR--FWGVTDLRLYM----LVLFPPLLLISWV 748 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i-~~~~~l~~l~~~--~~~~~~~~~~~----~i~~~~~~pl~~~ 748 (929)
+||+..+.+......+..........+ ..+..+.+++.. .. ..+...-+ ++..++.......
T Consensus 110 ----------Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~-gi~~~~~~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 110 ----------RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL-GISYGAAIWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred ----------hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc-CCcHHHHHHHHHHHHHHHHhhhhhh
Confidence 446666666555444433332222222 223333333211 11 12222222 2234455777888
Q ss_pred cCchhhhhHHHHHHHHHHHH
Q psy4524 749 PNLKYIVPFSSSATGVMFVS 768 (929)
Q Consensus 749 ~~l~~l~~~S~~~~~~~~~~ 768 (929)
..++...+.-.+=.+.++..
T Consensus 179 GGl~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIG 198 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 99999998887766655444
|
|
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=88.88 E-value=56 Score=38.55 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=23.8
Q ss_pred hhccccchhhhhhhccCCCCCCcccchhhhHH---HHHHHHHHHHHhHHHHhcCC
Q psy4524 304 SMSAIGIIMPLENEMRSPSKFTSKLGVLNVAM---LSIALIYTGFGFFGYLKYGP 355 (929)
Q Consensus 304 af~~~~~~~~i~~eMk~p~~~~~~~~v~~~s~---~~~~~~Y~~~g~~gY~~fG~ 355 (929)
.+.+++.+..=+-..|++++.+|.. ..+. ........++|+.|...+.+
T Consensus 243 g~~~~p~~~qR~~aaks~k~~~~~~---~~~~~~~~~~~~~~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 243 GYFGQPHIIVRFMAIRSHKELPKAR---RIGMSWMILSLLGAIAVGLTGIAYFNK 294 (487)
T ss_pred HhccchHHHHHHHhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445554433233446666666633 2222 22233345667777665543
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=88.58 E-value=49 Score=37.50 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=43.2
Q ss_pred HHHHhhhhhhhhchhHHHHh-hc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhccCCcc
Q psy4524 607 SHMIKGALGTGILTMPHAFK-DS--GYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPAR 683 (929)
Q Consensus 607 ~~l~~s~iG~GiLsLP~af~-~~--G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~f~~~~~~ 683 (929)
+.+..-.+|+|.|=.|-..- ++ .|..+.+..++.+...-..... + . .+ ...+|+++.++.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----a--v---~~-~gG~~~~l~~~~------- 64 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----A--L---AL-VGGGYDSLSARI------- 64 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----e--e---ee-cCCCHHHHHHHh-------
Confidence 34566779999999986644 33 4555666666655544443333 1 1 11 113788988643
Q ss_pred cccccchhHHHHHHHHHH
Q psy4524 684 FRWLAPYGRGLSFTAMIV 701 (929)
Q Consensus 684 ~~~~G~~~~~~v~i~~~i 701 (929)
||+...+....+.+
T Consensus 65 ----g~~f~~lf~~~~~l 78 (378)
T TIGR00796 65 ----GKVFGILFTVILYL 78 (378)
T ss_pred ----ChHHHHHHHHHHHH
Confidence 77777766554443
|
transmembrane helical spanners. |
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=86.90 E-value=27 Score=39.89 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=83.8
Q ss_pred ccccCCCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH-
Q psy4524 593 KAVSKKPLVYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYP- 670 (929)
Q Consensus 593 ~~~~~~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~- 670 (929)
+++++++.|.+|+.+.-+.+.+|+|-. +..-|..-.|-. +++.+-+.+++..-+-+.=+-...+++++.++ -+|.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~--G~~~G 88 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDED--GEYRG 88 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCC--CCEee
Confidence 344556899999999999999999976 788888777755 77888888877776666555555555433221 1222
Q ss_pred ---HHHHHHhccCCcccccccchhHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhh
Q psy4524 671 ---EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGA--LCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLI 745 (929)
Q Consensus 671 ---~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~--~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl 745 (929)
...++.++ .||...+..++ .+..+|. .....-.+.+. ++... ..+. +..-+...++.-+
T Consensus 89 GP~yyi~~gl~---------~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~----~~~~f-~i~~-~~~gi~l~~l~~~ 152 (416)
T PF01235_consen 89 GPMYYIEKGLG---------SKWLAILFAIF-LIIAFGIGFNMVQANSIADA----LSSAF-GIPP-WITGIILAILVAL 152 (416)
T ss_pred cHHHHHHHHhc---------cchHHHHHHHH-HHHHHHhhhhHHHHHHHHHH----HHhhc-cccH-HHHHHHHHHHHHH
Confidence 12233332 35666666665 2223332 22222233333 33211 2222 3333444444455
Q ss_pred hcccCchhhhhHHH
Q psy4524 746 SWVPNLKYIVPFSS 759 (929)
Q Consensus 746 ~~~~~l~~l~~~S~ 759 (929)
.....+|.++.++.
T Consensus 153 vi~GGikrI~~v~~ 166 (416)
T PF01235_consen 153 VIFGGIKRIAKVSE 166 (416)
T ss_pred HHHcchhHHHHHHH
Confidence 56677777776665
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=84.69 E-value=98 Score=37.15 Aligned_cols=48 Identities=6% Similarity=-0.076 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHH
Q psy4524 208 IYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLA 260 (929)
Q Consensus 208 ~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~ 260 (929)
.-+.-.+..++.+.+ .+...-+++..+++..-+..--++...|.-.+=
T Consensus 128 ~ql~~~~~~l~~~~g-----i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 128 GQMRGVGVVFSRFLE-----VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444555555542 233333334444444455555666666665544
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=81.07 E-value=2.3 Score=49.41 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=23.7
Q ss_pred cchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHH
Q psy4524 309 GIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYL 351 (929)
Q Consensus 309 ~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~ 351 (929)
.+.+...+.+|++++-.+ ...++..........+|.+|-.
T Consensus 219 ~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 219 PNASDYSRYAKSDTSAWW---GFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp CCCHHHHTTC--HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHhhCCCCCCcEE---EEeehhhhHHHHHHHHHHHHHH
Confidence 445678888988765544 4455665666666666666544
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=1.1e+02 Score=35.00 Aligned_cols=46 Identities=20% Similarity=0.054 Sum_probs=26.2
Q ss_pred cccchhhhhhhccCCCCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCC
Q psy4524 307 AIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGP 355 (929)
Q Consensus 307 ~~~~~~~i~~eMk~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 355 (929)
.-.+.+..-+..|+|++-.. ....++.+...+-.++|...-...|+
T Consensus 199 ~~~~~~DysRy~k~~~~~~~---~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 199 GGTLTADFVRFGRSAKIAVL---ATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hHhcCCChHhhccCccceee---hhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35677788888777754322 23445555555555566554445554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 929 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-04
Identities = 81/502 (16%), Positives = 140/502 (27%), Gaps = 186/502 (37%)
Query: 526 VVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRIVSFGFLVVCELGASCIYV 585
V A+Y + + + L AL E P+ + + G G G + +
Sbjct: 125 VFAKYNVSRLQPYLKLR------QALLELRPA-KNVLIDGV---LGS------GKTWV-A 167
Query: 586 IFVAGNLKAVSKKPL-VYW----------------DALSHMIKGALGTGILTMPHA---- 624
+ V + K K ++W L + I + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 625 ----------FKDSGY---LLGFLGTV----AIGAFTTSCIQILV--R------------ 653
K Y LL L V A AF SC +IL+ R
Sbjct: 228 HSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAAT 285
Query: 654 ----------------------AQYELCRRKRIPS---LTYP---EILGAALSEGPARF- 684
+Y CR + +P T P I+ ++ +G A +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 685 RWLAPYGRGLSFTAMIVDEIGAL-------CVYLLFI---ASNL-SQVCVRFWG---VTD 730
W + T +I + L L + ++++ + + W +D
Sbjct: 346 NWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 731 LRLYMLVLFPPLLLISWVPNLKYIVP---FSSSATGVMFVSL---AITMYYILGDFPSFS 784
+ + + L L+ +P +L + Y I F S
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-D 462
Query: 785 DRTP----------VG-HLS------DLPLFVGVTL---FSLSSIGVTMPLENEMQHP-R 823
D P +G HL + LF V L F LE +++H
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF----------LEQKIRHDST 512
Query: 824 QFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVS 883
+ A +LN + Y Y I N P+ + L V+
Sbjct: 513 AWNASGSILNTLQQLKF----------YKPY-------ICDNDPKYERL---------VN 546
Query: 884 ILFTFAL---PHFIVY---DIV 899
+ F + I D++
Sbjct: 547 AILDFLPKIEENLICSKYTDLL 568
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 99.06 | |
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 98.72 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 98.69 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 98.43 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 98.35 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 98.17 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 97.44 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 97.42 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 95.28 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 93.26 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 92.98 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 91.97 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8e-09 Score=118.76 Aligned_cols=243 Identities=8% Similarity=-0.000 Sum_probs=158.4
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
+++++.|.++..+..+++++|+|++.+|....+.|-. +++..++.++........+.|...+. ++.-...+..+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-----p~~Gg~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-----PSPGGSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCTTTHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCCchhhHH
Confidence 3457899999999999999999999999998888864 77788888888888777777776432 23335666666
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+.+ ||+..++......+.......++....++.+...++...+.+. .....+..+.+.-....+..|..
T Consensus 79 ~~~----------G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 79 RCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV-LTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHS----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH-HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHc----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH-HHHHHHHHHHHHHHHHHhchHHH
Confidence 655 7888888888888777766677777777766544433211111 11122222222333345677777
Q ss_pred hhHHHHHHHHHHHHHhhhhheeccC-CC-CCCCCC---CccCCCchhHHHHHHHHhhcccccccccccccCCCc-ccccc
Q psy4524 755 VPFSSSATGVMFVSLAITMYYILGD-FP-SFSDRT---PVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPR-QFTAR 828 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~-~~~~~ 828 (929)
++++.+.....+..++.+....... .+ +..+.. ...++.++...+....|+|.|........+|+|||+ +.+|
T Consensus 148 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~- 226 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI- 226 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH-
Confidence 7776655554433333222222211 11 111100 011245677788889999999999999999999995 3444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4524 829 LGVLNVSSAINTTIFAAFGLLAYLKYGDE 857 (929)
Q Consensus 829 ~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 857 (929)
.+..+...+.++|....+......+.+
T Consensus 227 --a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 227 --ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999998877776643
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-07 Score=104.25 Aligned_cols=63 Identities=8% Similarity=-0.009 Sum_probs=52.1
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS 356 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 356 (929)
+.++..++....|+|.+........+|+||| |+.+| .+..+..+++++|.+..+......+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4567788899999999999999999999999 45677 668899999999999998877777644
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=105.65 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=148.5
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
++|+.|.++..+..+++++|+|++.+|. +.+.+|- ..++..++.+++...+...+.|... ..++.-...+..+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~-----~~P~~Gg~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGA-----KIVSNAGPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCTTTHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCcHHHhHH
Confidence 4578999999999999999999998874 4556666 5777788888888888788877763 3333345666777
Q ss_pred HHhccCCcccccccch--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHH--HHHHHHHHHHhhhcccC
Q psy4524 675 AALSEGPARFRWLAPY--GRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRL--YMLVLFPPLLLISWVPN 750 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~--~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~~i~~~~~~pl~~~~~ 750 (929)
+.+ |++ +.. +.....+........+....++.+.+.++. ..+... ...+....+.-....+.
T Consensus 78 ~~~----------G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~in~~g 143 (444)
T 3gia_A 78 KAI----------GDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA---PINTFNIAITEIGIVAFFTALNFFG 143 (444)
T ss_dssp HHH----------CSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHh----------CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHHHHHHHHHh
Confidence 666 442 222 234444444555566666777777665543 111111 11222222233344556
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhheecc--CCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcc-ccc
Q psy4524 751 LKYIVPFSSSATGVMFVSLAITMYYILG--DFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ-FTA 827 (929)
Q Consensus 751 l~~l~~~S~~~~~~~~~~~iii~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~-~~~ 827 (929)
.|...+++.+.....+...+........ +..+..+..+..++.++...+....|+|.|...+....+|+|||+| .+|
T Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ 223 (444)
T 3gia_A 144 SKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH
Confidence 6777766665554433332222211111 1111221111222345566677788999999999999999999974 455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKYGD 856 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 856 (929)
.+..+...+.++|....+......+.
T Consensus 224 ---ai~~~~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 224 ---AIFISILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999988877666543
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-05 Score=90.16 Aligned_cols=245 Identities=11% Similarity=0.024 Sum_probs=131.2
Q ss_pred cccccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCHH
Q psy4524 592 LKAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTT-SCIQILVRAQYELCRRKRIPSLTYP 670 (929)
Q Consensus 592 ~~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~-~t~~lL~~~~~~~~~~~~~~~~sy~ 670 (929)
++++.+|+.+.++.++..+++++| +.++|. ....|.. +++..++.+.+.. .+...+.|.... +..+ .-...
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~---~~~P-~GG~y 76 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATV---DGWE-EGGVF 76 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTT---SCC----CHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccc---ccCC-CCChh
Confidence 344556789999999999999986 567775 4666653 3333333333322 245555555520 0223 34555
Q ss_pred HHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--hhhcC-CCchHHHHHHHHHHHHhhhc
Q psy4524 671 EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVC--VRFWG-VTDLRLYMLVLFPPLLLISW 747 (929)
Q Consensus 671 ~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~--~~~~~-~~~~~~~~~i~~~~~~pl~~ 747 (929)
...++.+ |++..++......+.......++....++.+...+ +...+ .+.. ..+.+..+.+.-...
T Consensus 77 ~~~~~~~----------g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~in 145 (511)
T 4djk_A 77 AWVSNTL----------GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITK-TIAALIILWALALTQ 145 (511)
T ss_dssp HHHHHHH----------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHH-HHHHHHHHHHHHHHH
T ss_pred hhHHhhc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHH-HHHHHHHHHHHHHHH
Confidence 6666655 77777888777777766666666666666664432 22111 1111 222222222222333
Q ss_pred ccCchhhhhHHHHHHHH-H---HHHHhhhhh-eeccCCCC---CCCCCCccCC--CchhHHHHHHHHhhccccccccccc
Q psy4524 748 VPNLKYIVPFSSSATGV-M---FVSLAITMY-YILGDFPS---FSDRTPVGHL--SDLPLFVGVTLFSLSSIGVTMPLEN 817 (929)
Q Consensus 748 ~~~l~~l~~~S~~~~~~-~---~~~~iii~~-~~~~~~~~---~~~~~~~~~~--~~~~~~~g~~~faf~~h~~i~~i~~ 817 (929)
.+..|...++..+.... . +..+++... ....+.+. .+......++ .+....+...+|+|.|........+
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~ 225 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVN 225 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555543322 1 111111111 11111110 1111111111 2334556778999999999999999
Q ss_pred ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4524 818 EMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDE 857 (929)
Q Consensus 818 ~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 857 (929)
|+|||+| ..++++..+..++.++|....+......+++
T Consensus 226 E~k~P~k--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 226 EMSNPGR--DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SSSCCTT--THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hccCccc--chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999974 3344999999999999999988877766654
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-06 Score=95.15 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=50.0
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
.++..++....|+|.|........+|+|||+ +.+| .+..+..+++++|.+..+......+
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3466677888999999999999999999995 4777 6688999999999998877665554
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00038 Score=81.00 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS 356 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 356 (929)
+...++...+|+|.|........+|+|||+ +.+| .+..++.+++++|++..+......+++
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 345667889999999999999999999995 4677 678899999999999988877776654
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=68.06 Aligned_cols=126 Identities=8% Similarity=0.025 Sum_probs=59.8
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEe
Q psy4524 197 FLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVF 276 (929)
Q Consensus 197 ~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~ 276 (929)
...+.++|-...-....++.++.+++...+..+..+..++..++.++..+ .-++.++++..+....++..++.+.+...
T Consensus 109 l~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~i~~i~~~~~~l 187 (501)
T 2jln_A 109 LKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASPVLLAMGVYMVYLML 187 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555666777777765433222223334445555555553 34666666666555444333333222221
Q ss_pred eccCC----CCCCCCCCCCCcchhhhhH-HHhhhccccchhhhhhhccCCCC
Q psy4524 277 TDVPS----ISERNPGGNLKELPLFFGT-VMFSMSAIGIIMPLENEMRSPSK 323 (929)
Q Consensus 277 ~~~~~----~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~~eMk~p~~ 323 (929)
.+... ...........++..++.. +.+.-....+.+...+.+|+|++
T Consensus 188 ~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 188 DGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 11110 0011111112233333332 22222334678888899998876
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.008 Score=69.42 Aligned_cols=288 Identities=8% Similarity=-0.013 Sum_probs=150.1
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKD-SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~-~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
+|+.++++-...-+...++.+...+...+.. .++.-+++.+++..++...-+.+......+.+ .+|.++.|.
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G-------l~~~v~~R~ 96 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG-------INFTVAARM 96 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC-------CCHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC-------CChhhhhHh
Confidence 3456777776666666666666666554443 33444555555555554444444444443322 368888887
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
.| |+++..+..+...+.++|-...-....++.+..+++...+..+.....+++.++.++.. ....+.+.
T Consensus 97 ~F----------G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 97 PF----------GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TS----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 66 89999999999999999998888888999998887654321123344445555555555 34566776
Q ss_pred hHHHHHHHHHHHHHhhhhheeccCCC----CCCCCCCccCCCchhHHHHH-HHHhhcccccccccccccCCCcc------
Q psy4524 756 PFSSSATGVMFVSLAITMYYILGDFP----SFSDRTPVGHLSDLPLFVGV-TLFSLSSIGVTMPLENEMQHPRQ------ 824 (929)
Q Consensus 756 ~~S~~~~~~~~~~~iii~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~faf~~h~~i~~i~~~m~~p~~------ 824 (929)
++..++...+++..+...+....+.. +..+.+.......+...+.. ..+.-....+.+...+.+|+|++
T Consensus 166 ~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~ 245 (501)
T 2jln_A 166 WMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccch
Confidence 66666655554444333322221110 00011111112233333333 22222344667788888888775
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCCCChHHHHHH-HHHHHHHHHHhcc-chhHHHHH
Q psy4524 825 ---FTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLN-LPQEDTLAVSVK-LLLSVSILFTFAL-PHFIVYDI 898 (929)
Q Consensus 825 ---~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n-~~~~~~~~~i~~-~~~~i~l~~syPL-~~~p~~~~ 898 (929)
.+|.......+..+...+...+|+..-...++.....++.. ++....+..++- +...++.+.+--. ++++....
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11211122233334444444555443322222111122222 221112133444 4455555444443 67777777
Q ss_pred HHhh
Q psy4524 899 VWNR 902 (929)
Q Consensus 899 i~~~ 902 (929)
+.+.
T Consensus 326 l~~~ 329 (501)
T 2jln_A 326 LCST 329 (501)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7776
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.73 Score=53.31 Aligned_cols=154 Identities=13% Similarity=0.025 Sum_probs=83.8
Q ss_pred cCCCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
..|+.+++...+.+..+.+++. .+++|-...+.|+........ .++........+..-.+ +.+..|..|.-+
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~------~~~~~T~~e~l~ 90 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI------EKGIYTIPEFVE 90 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHH------HTTCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHH------HcCCccHHHHHH
Confidence 3578889988888888877665 559998888888753221111 11111111222222221 234569999887
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVD-EIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~-~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
+- ||+..+.+..+...+. .+..+.+-+...+..++.++ .++...-+++..++.........++.
T Consensus 91 ~R----------fg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-----Gi~~~~~i~i~~~i~~~Yt~~GGl~a 155 (530)
T 3dh4_A 91 KR----------FNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL-----GIPLMYSILGLALFALVYSIYGGLSA 155 (530)
T ss_dssp HH----------TCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHTTC------
T ss_pred HH----------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHhcchHH
Confidence 53 4777777766654432 22222222223344444433 25566666677777788899999999
Q ss_pred hhhHHHHHHHHHHHHHhh
Q psy4524 754 IVPFSSSATGVMFVSLAI 771 (929)
Q Consensus 754 l~~~S~~~~~~~~~~~ii 771 (929)
..|...+=...++...++
T Consensus 156 V~~TD~iQ~~im~~g~~~ 173 (530)
T 3dh4_A 156 VVWTDVIQVFFLVLGGFM 173 (530)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998887666665544333
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=93.26 E-value=1.6 Score=50.32 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHH
Q psy4524 228 HDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASF 268 (929)
Q Consensus 228 ~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v 268 (929)
.+...-+++..+++...+..--++...|...+=.+.++...
T Consensus 131 i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~ 171 (530)
T 3dh4_A 131 IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGG 171 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34444445555555667777777887777766555544433
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=92.98 E-value=4.9 Score=47.03 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=79.8
Q ss_pred CCcchHHHHHHHHhhhhhhhh-chhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTGI-LTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~Gi-LsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
|+.+++...+.+..+.+++.. ++.|-...+.|+........ .++........+..-.+ +.+..|..|.-++
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~------r~~~~T~~e~l~~- 120 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI------EKGIYTIPEFVEK- 120 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH------HTTCCSHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH------hCCCCCcHHHHHH-
Confidence 566788888888777666554 59998888888753221111 11111111122222221 2345688898764
Q ss_pred hccCCcccccccchhHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIV-DEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
+||+..+.+..+...+ +.+.....-+...+..++.+++ ++....+++..++.........++...
T Consensus 121 ---------Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-----i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 ---------RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp ---------HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred ---------HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3477777766654433 2222223333334555555542 455555566666777888888898888
Q ss_pred hHHHHHHHHHHHH
Q psy4524 756 PFSSSATGVMFVS 768 (929)
Q Consensus 756 ~~S~~~~~~~~~~ 768 (929)
+.-.+=.+.++..
T Consensus 187 ~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 187 WTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554433
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=91.97 E-value=23 Score=41.32 Aligned_cols=49 Identities=8% Similarity=0.033 Sum_probs=24.2
Q ss_pred HHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHH
Q psy4524 213 VAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIA 266 (929)
Q Consensus 213 ~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~ 266 (929)
.+..++.+++ .+...-+++..+++...+..--++...|.-.+=.+.++.
T Consensus 150 ~~~~l~~~~G-----i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 150 GGLALETILG-----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVL 198 (593)
T ss_dssp HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-----ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4455555552 334333444555555566666777777766555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00