Psyllid ID: psy4550

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNGE
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccEEEEcHHHHHHcccccccEEEEcccHHHHHHHcccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccEEEEEccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccEccccccccHHHHHHHHHccccEEEEEHHHHHHHcccccccEEEEcccHHHHHHHHcccccccccccccHccEEEEEEEccccccccccEccHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mdsvnlsdydaegALHYMFRnqakrtpdkiavvdhdgrsitfkqLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKagggylpletsyppallesvlddakpsivitkgeymdrlertsvpkvklENDFLSKMISeneklhnvdfpqvglddIAYIVYssgttgkpkgivcphrgavhaykwrhraypydeddreaCNVFFVWEMLrpltqgipmyvisdeviydpprltsgwvrlplnge
Flexible Loop (DISEMBL)
mdsvnlsdYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLesvlddakpsivitkgeymdrlertsvpkvkleNDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSgttgkpkgivcphRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEViydpprltsgwvrlplnge
Low Complexity Region (SEG)
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNGE
Disordered region (IsUnstruct)
************GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL*****
Disordered Region (DISOPRED)
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK***************VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL***
Disordered Region (DISEMBL)
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNGE
Disordered Region (DISPRO)
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNGE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
P09095	1088	Tyrocidine synthase 1 OS=	N/A	N/A	0.888	0.204	0.308	4e-28
O68006	5255	Bacitracin synthase 1 OS=	yes	N/A	0.876	0.041	0.293	1e-27
Q70LM5	7756	Linear gramicidin synthas	N/A	N/A	0.876	0.028	0.313	6e-27
Q9R9J0	5369	Mycosubtilin synthase sub	yes	N/A	0.844	0.039	0.310	2e-26
O31782	5488	Polyketide synthase PksN	yes	N/A	0.796	0.036	0.333	2e-26
Q70LM4	5085	Linear gramicidin synthas	N/A	N/A	0.900	0.044	0.313	3e-26
P40806	5043	Polyketide synthase PksJ	no	N/A	0.876	0.043	0.301	4e-26
Q9R9I9	2609	Mycosubtilin synthase sub	no	N/A	0.804	0.077	0.297	1e-25
O30408	3587	Tyrocidine synthase 2 OS=	N/A	N/A	0.784	0.054	0.315	1e-25
O30409	6486	Tyrocidine synthase 3 OS=	N/A	N/A	0.892	0.034	0.301	3e-25

>sp|P09095|TYCA_BREPA Tyrocidine synthase 1 OS=Brevibacillus parabrevis GN=tycA PE=1 SV=2

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 14/237 (5%)

Query: 6   LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
           L  Y    ++H +F  QA+  PD++A+V  + R +++++L+   + +   L+ +G    S
Sbjct: 20  LVPYAQGKSIHQLFEEQAEAFPDRVAIV-FENRRLSYQELNRKANQLARALLEKGVQTDS 78

Query: 66  TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
            VGV+ME+ +E  I+ +A+ KAGG Y+P++  YP   ++ +L D++  IV+T+      +
Sbjct: 79  IVGVMMEKSIENVIAILAVLKAGGAYVPIDIEYPRDRIQYILQDSQTKIVLTQKSVSQLV 138

Query: 126 ERT--SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                S   V L+ + L     E   LH    P     D+AY++Y+SGTTGKPKG +  H
Sbjct: 139 HDVGYSGEVVVLDEEQLDA--RETANLHQPSKP----TDLAYVIYTSGTTGKPKGTMLEH 192

Query: 184 RGAVHAYKWRHRAYPYDEDDREA--CNVFF---VWEMLRPLTQGIPMYVISDEVIYD 235
           +G  +   +   ++   E DR     ++ F   VWEM   L  G  +Y++S + I+D
Sbjct: 193 KGIANLQSFFQNSFGVTEQDRIGLFASMSFDASVWEMFMALLSGASLYILSKQTIHD 249

In the first step of peptide synthesis this enzyme activates phenylalanine and racemizes it to the D-isomer.
Brevibacillus parabrevis (taxid: 54914)
EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp|O68006|BACA_BACLI Bacitracin synthase 1 OS=Bacillus licheniformis GN=bacA PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 14   ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
            A+H +F  QAKR PD  AVV  D + +T++QL+E  + V   L  +G    + VG++MER
Sbjct: 2126 AIHQLFEEQAKRIPDHTAVVFED-QKLTYRQLNEKANQVARLLREKGVKPDTLVGIMMER 2184

Query: 74   CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
              +   + + + KAGG YLP++  YPP  +  +  D++  ++I+     + L   S+  +
Sbjct: 2185 SSDMIAAILGVLKAGGAYLPIDPEYPPERMRYMAFDSEVKVIISDVPLAEELTAESIELI 2244

Query: 134  KLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR 193
             ++++ ++    +   + NV+  Q G  D+AY++Y+SG+TGKPKG++  H+  ++   W 
Sbjct: 2245 HMDDERIAG--QDRSDIDNVN--QSG--DLAYVIYTSGSTGKPKGVMIEHQSLINLCSWH 2298

Query: 194  HRAYPYDEDDREACNV-----FFVWEMLRPLTQGIPMYVISDEVIYDPPRLT 240
               +   ++D  +         FVWE+   +T G  ++V++ E   D  +L 
Sbjct: 2299 QSCFEVGQNDNSSIYASISFDAFVWELFPYITAGATVHVLNQETRLDVEKLN 2350

Activates five amino acids, incorporates two D-amino acids, releases and cyclizes the mature bacitracin.

Bacillus licheniformis (taxid: 1402)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q70LM5|LGRC_BREPA Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 15   LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
            +H      A++ P+++AVV  +G+ IT+ +LD   + V  YL  QG I  + VGV ++R 
Sbjct: 4114 VHEQVARIAQQLPNQLAVVSDEGQ-ITYAELDAKANQVANYLHKQGIISETLVGVCLDRS 4172

Query: 75   LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            ++  ++ + I KAGG Y+P++ +YP   L  ++ DA+  +V+T+   + +L       + 
Sbjct: 4173 IDMLVAQLGILKAGGAYVPMDPAYPQERLAFMMQDAEMPVVLTQEHLLAQLPEARATFLC 4232

Query: 135  LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
            L+ D+   +I+E   +  V       D++AY++Y+SG+TG PKG+   H   ++   W  
Sbjct: 4233 LDRDW--SLIAEESDVAPV--IATNRDNLAYVIYTSGSTGTPKGVEIEHAALLNLVSWHQ 4288

Query: 195  RAYPYDEDDRE---ACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
            RAY    +DR    A   F   VWE+   LT+G  +Y+ S+E+   P +L
Sbjct: 4289 RAYEVGAEDRATQIAGTAFDASVWEIWPYLTKGATLYLPSEEIRLVPEQL 4338

Activates the 7th to 12th amino acids (Val, D-Val, Trp, D-Leu, Xaa and D-Leu) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 8th (D-Val), the 10th (D-Leu) and 12th (D-Leu) amino acids. The 11th (Xaa) amino acid is Trp in linear gramicidin A; Phe in linear gramicidin B and Tyr in linear gramicidin C.

Brevibacillus parabrevis (taxid: 54914)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9R9J0|MYCB_BACIU Mycosubtilin synthase subunit B OS=Bacillus subtilis GN=mycB PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 23/235 (9%)

Query: 7   SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
           +DY     +  +F  QA+RTPD +AV       +T+++L+E ++ +   L N G    + 
Sbjct: 257 ADYSGNKTVSQLFEEQAERTPDHVAV-KFVNNHMTYRELNEKSNRLARTLRNYGVQADTL 315

Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
           V ++ ER LE  +S +AI KAGG Y+PL+  YP   L+ VL+DA   +++ +  + + L 
Sbjct: 316 VAIMAERSLEMIVSIMAIWKAGGAYVPLDPEYPEERLQYVLNDANADVLVVQRHFKNSLV 375

Query: 127 RTSVPKVKLENDFLSKMISEN-EKLHNVD----FPQVGLDDIAYIVYSSGTTGKPKGIVC 181
                       F   MI  N E  ++ D     P      +AY++Y+SGTTGKPKG++ 
Sbjct: 376 ------------FDGPMIDLNDETSYHADCSLLSPIAEHSHLAYVIYTSGTTGKPKGVMV 423

Query: 182 PHRGAVHAYKWRHRAYPYDEDDREAC---NVF--FVWEMLRPLTQGIPMYVISDE 231
            H G V++ +W+   + +  +DR       VF  F+     PL  G  +Y++ +E
Sbjct: 424 EHGGIVNSLQWKKAFFKHSAEDRVLVLYPYVFDAFILNFFGPLISGAALYLLPNE 478

This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Tyr, Asn, Gln and Pro as part of the synthesis of mycosubtilin. The Asn and Gln residues are further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains.

Bacillus subtilis (taxid: 1423)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O31782|PKSN_BACSU Polyketide synthase PksN OS=Bacillus subtilis (strain 168) GN=pksN PE=1 SV=3

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 1/201 (0%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           +H +F  +AK+TPD +AV+  D RS+T+K++DE +  V  YL +QG      VG+  ER 
Sbjct: 468 IHEVFEEKAKQTPDAVAVMFED-RSLTYKEVDEKSTSVAVYLQHQGVRPEQPVGICAERS 526

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            +  I  + I KAGG Y+PL+ S+P   L+ +L D++ SIV+T+    DR+   +   VK
Sbjct: 527 FDMIIGILGILKAGGAYVPLDPSFPQERLKYMLKDSQASIVLTQPNVHDRISGLTGSHVK 586

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
             N  L+      ++  +    +V  + +AYI+Y+SG+TG+PKG++  HR  ++   +  
Sbjct: 587 AINIELACRNGYTDQQSSGLKREVKPEHLAYIIYTSGSTGEPKGVMVEHRSIMNTLNFLE 646

Query: 195 RAYPYDEDDREACNVFFVWEM 215
             YP   +D       +V+++
Sbjct: 647 SHYPVTAEDAYLLKTNYVFDV 667

Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q70LM4|LGRD_BREPA Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 9    YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
            Y  E  +H +    A+  PD+ AVV  D + +T+ QL+   + +  YL  QG   GS VG
Sbjct: 1513 YSTEQLVHELVAQVARDMPDQPAVVTRD-QLLTYGQLEAKANQLAHYLQKQGVGRGSLVG 1571

Query: 69   VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
            + +ER +E  I  +AI KAG  Y+P++ +YP   L  ++ DA  +IV+T+ +   +L   
Sbjct: 1572 ICVERSVEMVIGQLAIMKAGAAYIPMDPAYPKERLAFMMHDASMAIVLTQAKLRQKLPAD 1631

Query: 129  SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH 188
            +   + L+ D+ +        L N         D+AY++Y+SG+TG PKG+   H   ++
Sbjct: 1632 TSRLICLDADWETIAQEPTAALVNT----TAASDLAYVIYTSGSTGTPKGVEIEHAALLN 1687

Query: 189  AYKWRHRAYPYDEDDRE---ACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
               W  RAY     DR    A   F   VWE+   +T+G  +Y+  +E+   P +L
Sbjct: 1688 LIFWHQRAYDVTATDRASQIAGTAFDASVWEIWPYVTKGATLYLPEEEIRLVPEKL 1743

Activates the 13th to the 16th (Trp, D-Leu, Trp and Gly) amino acids in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 14th (D-Leu) amino acid. It also catalyzes the NAD(P)H-dependent reduction of the C-terminal glycine residue of the N-formylated 16-mer peptide, that binds to the peptidyl carrier domain of the terminal module of this protein, to form a peptidyl-aldehyde intermediate that is released from the enzyme complex.

Brevibacillus parabrevis (taxid: 54914)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P40806|PKSJ_BACSU Polyketide synthase PksJ OS=Bacillus subtilis (strain 168) GN=pksJ PE=1 SV=3

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 15   LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
             H +F  QAK+TPD+ A V ++G+++T+++LDE +  +  YL   G       G+ ++R 
Sbjct: 1156 FHELFEQQAKKTPDR-AAVSYEGQTLTYRELDEKSTQLAIYLQAHGVGPDRLAGIYVDRS 1214

Query: 75   LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            L+  +  +AI KAGG Y+PL+ SYP   LE +L+D++  I +T  E ++ L    V    
Sbjct: 1215 LDMLVGLLAILKAGGAYVPLDPSYPAERLEYMLEDSEVFITLTTSELVNTLSWNGVTTAL 1274

Query: 135  LENDF--LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
            L+ D+  +++  S+ + L     P+    ++AY++Y+SG+TGKPKG++ PH+   +    
Sbjct: 1275 LDQDWDEIAQTASDRKVLTRTVTPE----NLAYVIYTSGSTGKPKGVMIPHKALTNFLVS 1330

Query: 193  RHRAYPYDEDDR-----EACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
                     +D+       C      E+  PL +G   Y+   E   D  +L
Sbjct: 1331 MGETPGLTAEDKMLAVTTYCFDIAALELFLPLIKGAHCYICQTEHTKDVEKL 1382

Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9R9I9|MYCC_BACIU Mycosubtilin synthase subunit C OS=Bacillus subtilis GN=mycC PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 117/215 (54%), Gaps = 13/215 (6%)

Query: 7   SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
           ++Y  E  +H +F  QA RTPD++AVV ++   +T+++L+E  + +   L ++G      
Sbjct: 255 AEYPREKTIHQLFEEQANRTPDQVAVV-YEENQLTYQELNEKANQIARTLQSEGVHPDQP 313

Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
           VG++ ER LE  +    I KAGG Y+P++ +YP   +  +L+D+   +++ +    +++ 
Sbjct: 314 VGIMAERSLEMIVGLFGILKAGGAYVPIDPTYPEERIRYILEDSDTKLLLVQHHLREKVP 373

Query: 127 RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
            T   KV L+ +       +   L ++  P    + +AY++Y+SG+TGKPKG++  HR  
Sbjct: 374 FTG--KV-LDMEDPQTFSEDGSNLESISGP----NQLAYVIYTSGSTGKPKGVMVEHRSV 426

Query: 187 VHAYKWRHRAYPYDEDDR--EACNVFF---VWEML 216
           ++   W    YP DE D   +   + F   VWE+ 
Sbjct: 427 INRLVWMQENYPLDERDAILQKTAITFDVSVWELF 461

This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Ser and Asn as part of the synthesis of mycosubtilin. The Ser residue is further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains.

Bacillus subtilis (taxid: 1423)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O30408|TYCB_BREPA Tyrocidine synthase 2 OS=Brevibacillus parabrevis GN=tycB PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 117/206 (56%), Gaps = 9/206 (4%)

Query: 9    YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
            Y AE  L  +F +QA++TP++ AVV  D R +T+++L+E  + +   L  +G     +VG
Sbjct: 1503 YPAESTLSQLFEDQAQKTPEQTAVVFGDKR-LTYRELNERANQLAHTLRAKGVQAEQSVG 1561

Query: 69   VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
            ++ +R LE  I  IAI KAGG Y+P++  YP   +  +L+D +  +V+T+ +  +++   
Sbjct: 1562 IMAQRSLEMAIGIIAILKAGGAYVPIDPDYPNERIAYMLEDCR-RLVLTQQQLAEKM--- 1617

Query: 129  SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH 188
                  +E  +L +  S + +  N++ P     D+AYI+Y+SGTTG+PKG++  HRG V+
Sbjct: 1618 ---TANVECLYLDEEGSYSPQTENIE-PIHTAADLAYIIYTSGTTGRPKGVMVEHRGIVN 1673

Query: 189  AYKWRHRAYPYDEDDREACNVFFVWE 214
            +  W    +     D    ++ F ++
Sbjct: 1674 SVTWNRDEFALSVRDSGTLSLSFAFD 1699

Activates the second to fourth amino acids in tyrocidine (in tyrocidine A, Pro, Phe, and D-Phe) and epimerizes the last one.

Brevibacillus parabrevis (taxid: 54914)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O30409|TYCC_BREPA Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 15/239 (6%)

Query: 9    YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
            Y  +  LH +F  Q  +TPD+ A++  + +S+T+ +L+E  + +   L  +G      V 
Sbjct: 5652 YALDKTLHQLFEEQVDKTPDQAALLFSE-QSLTYSELNERANRLARVLRAKGVGPDRLVA 5710

Query: 69   VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
            ++ ER  E  I  + I KAGG Y+P++  YP   ++ +L+D+  ++++++   +  L + 
Sbjct: 5711 IMAERSPEMVIGILGILKAGGAYVPVDPGYPQERIQYLLEDSNAALLLSQAHLLPLLAQV 5770

Query: 129  S--VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
            S  +P+    N  L   +S    L  V+ P     D+AY++Y+SGTTGKPKG++ PH+G 
Sbjct: 5771 SSELPECLDLNAELDAGLS-GSNLPAVNQP----TDLAYVIYTSGTTGKPKGVMIPHQGI 5825

Query: 187  VHAYKWRHRAYPYDEDDREACNVF------FVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
            V+  +WR   Y +   D+ A  VF      FV  +  PL  G    +  +    DP  L
Sbjct: 5826 VNCLQWRRDEYGFGPSDK-ALQVFSFAFDGFVASLFAPLLGGATCVLPQEAAAKDPVAL 5883

Incorporates six amino acids (for tyrocidine A, Asn, Gln, Tyr, Val, Orn, and Leu) in their L-configuration into the peptide product.

Brevibacillus parabrevis (taxid: 54914)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
328714539	1278	PREDICTED: linear gramicidin synthase su	0.928	0.182	0.542	8e-70
260827070	1329	hypothetical protein BRAFLDRAFT_128033 [	0.916	0.173	0.510	3e-65
156349394	705	predicted protein [Nematostella vectensi	0.920	0.327	0.525	3e-64
198430899	1044	PREDICTED: similar to ebony CG3331-PA [C	0.948	0.227	0.491	4e-62
196005111	1212	hypothetical protein TRIADDRAFT_25485 [T	0.900	0.186	0.517	4e-60
405967002	1378	Linear gramicidin synthetase subunit D [	0.916	0.166	0.495	3e-59
348666002	1309	hypothetical protein PHYSODRAFT_348550 [	0.944	0.181	0.473	1e-57
301115342	1311	L-aminoadipate-semialdehyde dehydrogenas	0.912	0.174	0.467	2e-56
443688298	1268	hypothetical protein CAPTEDRAFT_168750 [	0.900	0.178	0.482	1e-52
299473230	1338	nonribosomal peptide synthetase 10 [Ecto	0.912	0.171	0.464	2e-52

>gi|328714539|ref|XP_001942617.2| PREDICTED: linear gramicidin synthase subunit D-like [Acyrthosiphon pisum]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 169/236 (71%), Gaps = 3/236 (1%)

Query: 4   VNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
           VN+S+YD +G L  MF+ QA  TP+ +AV++ DG  +TFK+LDE TD++   L + G   
Sbjct: 7   VNMSNYDKQGCLDEMFKIQANATPNAVAVINIDGSMVTFKELDEMTDLLAAKLRSIGVCK 66

Query: 64  GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
            S VG++MERCLE+TISYIAIHKAGG  L LE SYP  LL SVL+D+ P  ++TK  +  
Sbjct: 67  NSIVGIMMERCLEYTISYIAIHKAGGACLILEVSYPLPLLRSVLEDSTPKAILTKEFFES 126

Query: 124 RLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
           R E   +  + L+N +  ++    +K      P   LDD+A +V+SSGTTGKPKGI CPH
Sbjct: 127 RFEEQQL--IYLDNGWYDRLKKSVDKSLLKKEPN-ELDDLAIVVFSSGTTGKPKGIQCPH 183

Query: 184 RGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           RGAV+++ WRH+AYPY  DDREACNVFF+WEM+RPL +GIP+Y+I D+ IYDPPRL
Sbjct: 184 RGAVYSFTWRHKAYPYVADDREACNVFFIWEMIRPLLKGIPLYIIPDDAIYDPPRL 239

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260827070|ref|XP_002608488.1| hypothetical protein BRAFLDRAFT_128033 [Branchiostoma floridae] gi|229293839|gb|EEN64498.1| hypothetical protein BRAFLDRAFT_128033 [Branchiostoma floridae]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 167/237 (70%), Gaps = 7/237 (2%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           +Y  +G LH MF  QA++TPD +AVV  DGR +TF++L+E TD++  +L  +G  V + V
Sbjct: 2   EYVKQGCLHEMFVRQAQKTPDAVAVVSDDGRQLTFRELNELTDVLALHLQLKGVQVDTIV 61

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G+ +E+CLE+ I+YIA  KAG  Y+PL+ SYP  LL  +L D +P+ V+T  +   R++ 
Sbjct: 62  GIYLEKCLEYPIAYIATLKAGAAYMPLDVSYPDPLLHDILRDCEPAAVLTSPDLAGRVK- 120

Query: 128 TSVPKVKLENDFLSKMISENEKLHNV-----DFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
             V  V  ++++  K+  EN++L  +       P V LD++AY+VYSSGTTGKPKGI+CP
Sbjct: 121 -GVTCVVFDDNWQEKIKEENKELLGIWPGTCQPPHVDLDNLAYVVYSSGTTGKPKGIMCP 179

Query: 183 HRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           HRGAV +Y WRH  YP+ EDDR ACNVFFVWEM+RPL +GIP+YVI D+VIYDP  L
Sbjct: 180 HRGAVFSYHWRHENYPFAEDDRVACNVFFVWEMMRPLLKGIPLYVIPDDVIYDPTLL 236

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156349394|ref|XP_001622040.1| predicted protein [Nematostella vectensis] gi|156208440|gb|EDO29940.1| predicted protein [Nematostella vectensis]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 160/232 (68%), Gaps = 1/232 (0%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           DY+  G LH +F  QA +TP+K AVV  DGR + F +L+  TDI+ + L ++GC     V
Sbjct: 2   DYEKYGCLHEIFTRQALKTPEKTAVVCDDGRHLNFSELNRLTDILASNLRHKGCGKDKVV 61

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G+ MERCLE+ I+YI+  KAGG Y+PLE SYP  LL+S+ +D+ P  +IT  E   RL  
Sbjct: 62  GIYMERCLEYPIAYISALKAGGAYMPLELSYPENLLKSIFEDSSPVAIITTDELKSRLP- 120

Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
           +SVP + L   +  ++  EN++L  +   +  LDD+AY+VYSSGTTGKPKGI CPHRGAV
Sbjct: 121 SSVPVLVLSKGWDERLQKENKELGYLPPVESSLDDLAYVVYSSGTTGKPKGIACPHRGAV 180

Query: 188 HAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
            +Y WR   YPY + +R ACNVFFVWEMLR L  GIP+YVI D++IYDPP L
Sbjct: 181 FSYTWRFTNYPYKDGERVACNVFFVWEMLRSLLVGIPLYVIPDDIIYDPPLL 232

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|198430899|ref|XP_002121624.1| PREDICTED: similar to ebony CG3331-PA [Ciona intestinalis]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 166/244 (68%), Gaps = 6/244 (2%)

Query: 6   LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
           L  Y++ G LH +F+ QA+ TPD +AVV  D  ++TF++LDE ++++   L  +G +  S
Sbjct: 7   LEKYESLGCLHEIFQRQARATPDSVAVVGDD-VTLTFQELDEASNVLADALQIRGVVRDS 65

Query: 66  TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
           +VG+ MERC+ + ISYIAI KAGG Y+PL+ SYP  LLE +  DAKP  +IT  +   R+
Sbjct: 66  SVGIFMERCVGYVISYIAILKAGGAYMPLDLSYPDVLLEDIFSDAKPVCIITNPQMQKRV 125

Query: 126 ERTSVPKVKLENDFLSKMISENEKL----HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVC 181
                  + L  ++  K+  EN        ++  P+V LDD+AY+VYSSGTTGKPKGI+C
Sbjct: 126 LDKKQTVLVLNENWKEKLDKENRDAVTGGADLTRPKVQLDDLAYVVYSSGTTGKPKGIMC 185

Query: 182 PHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTS 241
           PHRGAV++Y WRH   P++  DR ACNVFFVWEMLRPL +G+P+YVI D  IYD P L S
Sbjct: 186 PHRGAVYSYTWRHLICPFETGDRVACNVFFVWEMLRPLLKGVPLYVIPDTAIYD-PLLLS 244

Query: 242 GWVR 245
           G+++
Sbjct: 245 GFLK 248

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196005111|ref|XP_002112422.1| hypothetical protein TRIADDRAFT_25485 [Trichoplax adhaerens] gi|190584463|gb|EDV24532.1| hypothetical protein TRIADDRAFT_25485 [Trichoplax adhaerens]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/228 (51%), Positives = 163/228 (71%), Gaps = 2/228 (0%)

Query: 14  ALHYMFRNQAKRTPDKIAVVDHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
            LH +FR QA RTPD IAVVD D  +S+TFK+LD  ++++ T L ++G  V S  G+ M+
Sbjct: 8   CLHEIFRRQASRTPDAIAVVDPDNNKSMTFKELDMASEVLATNLRHKGIKVDSIGGIYMD 67

Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPK 132
           +CLE+ I+YIAI KAGG YLPL+ SYPPALL+ VL+DA+P  VIT   +   L  + +  
Sbjct: 68  KCLEYVIAYIAILKAGGAYLPLDVSYPPALLKMVLEDAEPVAVITTQSWASLLP-SELEI 126

Query: 133 VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           + L++ + + +  EN    +V+  +  LDD+AY+VYSSGTTGKPKGI CPHRGAV +Y  
Sbjct: 127 IVLDDGWQNILEQENTARGDVEQIKNSLDDLAYVVYSSGTTGKPKGICCPHRGAVFSYTK 186

Query: 193 RHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLT 240
           R   YP++++DR ACNVFFVWE+LRPL +GI +Y+I + +IYDP  L+
Sbjct: 187 RFLFYPFEDNDRVACNVFFVWELLRPLLKGITLYIIPNAIIYDPVLLS 234

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|405967002|gb|EKC32217.1| Linear gramicidin synthetase subunit D [Crassostrea gigas]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 157/232 (67%), Gaps = 2/232 (0%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           DY+ EG LH M   QA+ TPDKIA+V+  G+ +TF+ L   +D++   L   G    S V
Sbjct: 102 DYENEGLLHEMLIRQAEATPDKIAIVEPGGKQLTFRDLHGDSDVLAKTLKRIGVQSDSCV 161

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G+ +++ +E++++YIAI KAGG YLPL+ SYP +L+ESVL DA+P  V+T  +    +E 
Sbjct: 162 GIYLDKSIEFSVTYIAILKAGGAYLPLDVSYPASLMESVLTDAEPVAVVTSPDLAHSIE- 220

Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
             V  + L +D   K   E  K       ++ LD++AY+VYSSGTTG+PKGI+CPHRG+V
Sbjct: 221 -GVKNIILLDDGWQKRQQEENKDFKDAPLEMTLDNLAYVVYSSGTTGRPKGIMCPHRGSV 279

Query: 188 HAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
            +Y  RH  +PY  +DREACN+FF WEMLRPL +GIPMYVI + VIYDPP L
Sbjct: 280 FSYHHRHVTFPYQMEDREACNIFFTWEMLRPLLKGIPMYVIPNTVIYDPPLL 331

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|348666002|gb|EGZ05830.1| hypothetical protein PHYSODRAFT_348550 [Phytophthora sojae]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 4/241 (1%)

Query: 1   MDSVN--LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN 58
           +D +N  +  Y +E  LH MF + AKRTPD +AV   D +++TF+++DE ++ +  YL  
Sbjct: 268 IDGLNSKMGPYPSEKCLHDMFADAAKRTPDAVAVYYED-KTLTFREVDEQSEKLADYLFQ 326

Query: 59  QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
            G   G   G+ ME C+E+ I+YIA  KAGG Y+PLE  YPP LLE V++++KP IV+TK
Sbjct: 327 AGVRPGCISGIFMEHCIEFVIAYIAALKAGGAYMPLEIVYPPDLLERVMEESKPVIVLTK 386

Query: 119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
            ++ +RL       ++L++ +L  +  +N     +D  +   DD+AY+V SSGTTG PKG
Sbjct: 387 KKFRNRLPGWQ-QALELDDGWLESLARQNIPSMPLDRTRTHPDDLAYVVMSSGTTGVPKG 445

Query: 179 IVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPR 238
           I CPHRGAVH+Y WR    PY EDDR AC+VFFVWE+LRP+    P+YVI D  IYDP +
Sbjct: 446 ICCPHRGAVHSYDWRLTHCPYKEDDRVACHVFFVWELLRPMLGNRPLYVIPDNTIYDPIK 505

Query: 239 L 239
           L
Sbjct: 506 L 506

Source: Phytophthora sojae

Species: Phytophthora sojae

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|301115342|ref|XP_002905400.1| L-aminoadipate-semialdehyde dehydrogenase large subunit, putative [Phytophthora infestans T30-4] gi|262110189|gb|EEY68241.1| L-aminoadipate-semialdehyde dehydrogenase large subunit, putative [Phytophthora infestans T30-4]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 154/231 (66%), Gaps = 2/231 (0%)

Query: 9   YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
           Y +E  LH MF   AKRTPD +AV  ++G+++TF+QLDE ++ +  YL + G       G
Sbjct: 282 YPSENCLHDMFYEAAKRTPDAVAVY-YEGKTLTFRQLDEQSERLADYLYHAGVRPNCISG 340

Query: 69  VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
           + ME C+E+ I+Y+A  KAGG Y+PLE  YPP LLE V++++KP+IV+TK ++ +RL   
Sbjct: 341 IFMEHCIEFVIAYVAALKAGGAYMPLEIVYPPDLLERVMEESKPTIVLTKKKFRNRLPAW 400

Query: 129 SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH 188
               ++L++ ++  +  +   +   D  +   DD+AY+V SSGTTG PKGI CPHRGAVH
Sbjct: 401 Q-QALELDDGWIESLARQKIPVMPADRTRTHPDDLAYVVMSSGTTGVPKGICCPHRGAVH 459

Query: 189 AYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           +Y WR     Y +DDR AC+VFFVWE+LRP+    P+YVI D  IYDP +L
Sbjct: 460 SYDWRLTHCSYKDDDRVACHVFFVWELLRPMLGNRPLYVIPDNTIYDPVKL 510

Source: Phytophthora infestans T30-4

Species: Phytophthora infestans

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|443688298|gb|ELT91031.1| hypothetical protein CAPTEDRAFT_168750 [Capitella teleta]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/232 (48%), Positives = 147/232 (63%), Gaps = 6/232 (2%)

Query: 9   YDAEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           Y+ +G LH MF  QAK TPD+IAVV   + R +T+K+LD+ TD++ T +   G      V
Sbjct: 6   YEDQGLLHEMFMRQAKETPDRIAVVSPGENRQLTYKELDDVTDVLATNMRINGVREDCIV 65

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G+ ME+CL +TISYIA  KAGG Y+P++ SYP  L+  +L DA+P+IV         L  
Sbjct: 66  GIYMEKCLNYTISYIAALKAGGAYMPIDISYPSTLIGDILSDAQPTIVCVASALASNLPD 125

Query: 128 TSVPKVKLEN--DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
                V   N  + L K  +E+    +   P V LD +AY+VYSSGTTG+PKGI CPHRG
Sbjct: 126 NQKVIVMDVNWVETLKKANAEHPPFTSP--PVVTLDSLAYVVYSSGTTGRPKGIQCPHRG 183

Query: 186 AVHAYKWRHRAYPYDEDD-REACNVFFVWEMLRPLTQGIPMYVISDEVIYDP 236
           +V +Y  RH   PY EDD REA N+FF WEMLRPL +G  M+++ D VIYDP
Sbjct: 184 SVFSYHHRHLFSPYSEDDQREASNIFFTWEMLRPLLKGATMFIVPDTVIYDP 235

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|299473230|emb|CBN78806.1| nonribosomal peptide synthetase 10 [Ectocarpus siliculosus]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 148/241 (61%), Gaps = 12/241 (4%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           DY  +  LH MFR  AK+  D  A+V + G S+TF ++D+ TD +  +L ++G  VGSTV
Sbjct: 117 DYPNKSCLHDMFRESAKKNRDATAIV-YKGASLTFGEVDDLTDALAGWLYSKGVRVGSTV 175

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G+ M+   E+ ++YIA HKA G Y+PLE  YP  LLE V+   KP +V+T+   +DRL  
Sbjct: 176 GIFMDHRTEFALAYIAAHKATGAYMPLELVYPADLLEGVMKQVKPPMVLTQSSVVDRLPS 235

Query: 128 TSVPKVKLENDFLSKMISENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
                   ++    K   E   +  +   P    DD+AY+V SSGTTG PKGI CPHRGA
Sbjct: 236 WQATLCMDDDGEWIKTAREAPPVPQDAALPSP--DDLAYVVMSSGTTGAPKGICCPHRGA 293

Query: 187 VHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQG--------IPMYVISDEVIYDPPR 238
           VH+Y  R   +PY E DREAC+VFFVWE+LRPL  G        +P+YVI D+ IYDPPR
Sbjct: 294 VHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDPPR 353

Query: 239 L 239
           L
Sbjct: 354 L 354

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
UNIPROTKB|G4N9G1	1280	MGG_03290 "N-(5-amino-5-carbox	0.908	0.178	0.383	7.8e-35
ASPGD|ASPL0000029611	1270	AN5318 [Emericella nidulans (t	0.884	0.174	0.376	2.4e-33
UNIPROTKB|Q4KCD8	6675	rzxB "Polyketide synthase/nonr	0.872	0.032	0.323	1.5e-26
UNIPROTKB|Q606X9	1314	MCA1883 "Non-ribosomal peptide	0.764	0.146	0.328	1e-23
UNIPROTKB|Q4KES9	4901	ofaC "Non-ribosomal peptide sy	0.940	0.048	0.274	8e-23
UNIPROTKB|Q81QP7	2385	dhbF "Nonribosomal peptide syn	0.876	0.092	0.316	1.5e-22
TIGR_CMR|BA_2372	2385	BA_2372 "nonribosomal peptide	0.876	0.092	0.316	1.5e-22
ASPGD|ASPL0000037093	3770	acvA [Emericella nidulans (tax	0.944	0.062	0.290	1.6e-22
UNIPROTKB|Q4KET1	2121	ofaA "Non-ribosomal peptide sy	0.920	0.108	0.277	8.6e-21
UNIPROTKB|Q0VZ70	3912	cmdD "Chondramide synthase cmd	0.677	0.043	0.367	1.7e-20

UNIPROTKB|G4N9G1 MGG_03290 "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 390 (142.3 bits), Expect = 7.8e-35, P = 7.8e-35
 Identities = 89/232 (38%), Positives = 129/232 (55%)

Query:    10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
             D    L  +F  QA  TPD +A+ D +  ++T+ +L+  T ++   L  QG    S VGV
Sbjct:     5 DMNKDLAALFCKQAAATPDAVALED-ETTTLTYAELERQTGLLANRLRQQGVGRDSLVGV 63

Query:    70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
             L+ R  ++ I+ +A  +AGG +L LE +YPP LL  V+DDA P++V+T   +   L +  
Sbjct:    64 LLGRSADYVIACLAALRAGGAFLVLELAYPPQLLCDVIDDANPTVVVTHRAHAG-LIKPE 122

Query:   130 VPKVKLENDFLSKMISENEKLH-NVDFP-QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
             +P V L+    +   S       N + P    LD +A++ Y+SGTTG+PKGI  PHR  V
Sbjct:   123 IPLVVLDEPNATPEDSAQPTGDANQELPADDDLDRLAFVCYTSGTTGRPKGIANPHRAPV 182

Query:   188 HAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
              +Y  R         DR ACNVFF+WE+LRPL +G  +  + D V YDP  L
Sbjct:   183 RSYSLRFELSDLKPGDRVACNVFFIWEILRPLLRGATVVAVPDNVSYDPVAL 234

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000029611 AN5318 [Emericella nidulans (taxid:162425)]

 Score = 376 (137.4 bits), Expect = 2.4e-33, P = 2.4e-33
 Identities = 88/234 (37%), Positives = 130/234 (55%)

Query:    10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
             D    L  +F  Q + +P+ +A+ D D  S T+ +LD+  + +   L + G    S VGV
Sbjct:     5 DTTKDLSALFTQQVRASPNALALED-DKTSYTYAELDKEVEELSRRLRSYGVSRDSLVGV 63

Query:    70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
             L+ R   + I+ +A  +AGG +L LE +YPP LL  VL+DA P++V+T      ++ + S
Sbjct:    64 LLPRSAHFVIACLAALRAGGAFLVLELAYPPDLLADVLEDATPAVVVTHRSETGKI-KGS 122

Query:   130 VPKVKLENDFLSKMISENEKLHNVDFPQVGLDD----IAYIVYSSGTTGKPKGIVCPHRG 185
             VP + L+       +  N   H V+   + +DD    +A++ YSSGTTGKPKGI  PHR 
Sbjct:   123 VPVISLDEP----PVDANG--HTVEPGPLPVDDDLDRLAFVSYSSGTTGKPKGIANPHRA 176

Query:   186 AVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
              V +Y  R         DR ACNVFF+WE+LRPL +G  +  + D+  YDP  L
Sbjct:   177 PVLSYNLRFGVQDLQPGDRVACNVFFIWEILRPLIRGATVVAVPDDHSYDPAAL 230

GO:0019748 "secondary metabolic process" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004043 "L-aminoadipate-semialdehyde dehydrogenase activity" evidence=IEA

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IEA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q4KCD8 rzxB "Polyketide synthase/nonribosomal peptide synthetase hybrid RzxB" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 316 (116.3 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 74/229 (32%), Positives = 121/229 (52%)

Query:     8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
             +Y  +  L  +   Q +R+PD +AV   D ++++F QL+   + +  YL   G    S V
Sbjct:    39 EYPLDQCLQQLIEQQVQRSPDAVAVC-FDDQTLSFCQLNRRANRLAHYLRELGIGPDSLV 97

Query:    68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
             GV MER LE  ++ +AI KAGG YLPL+  YP   L  ++DDA  S+V+T+  +  RL+ 
Sbjct:    98 GVQMERSLELMVALLAILKAGGAYLPLDPGYPEERLALIIDDAAVSVVLTQQRFEHRLKA 157

Query:   128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
              +V  + L++    ++    +   +++ P  G  D+AY++Y+SG+TG+PKG + PH+   
Sbjct:   158 QAVEVICLDDPASEELHPSEDNPASINSP--G--DLAYVIYTSGSTGRPKGCMLPHKAIC 213

Query:   188 HAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDE 231
             +   W  R Y     +R      F     VWE+  PL  G  + +   E
Sbjct:   214 NRLLWMQRHYQVGPAERILQKTPFTFDVSVWELFLPLLSGACLVMAKPE 262

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IMP;IDA

GO:0030639 "polyketide biosynthetic process" evidence=IDA

UNIPROTKB|Q606X9 MCA1883 "Non-ribosomal peptide synthetase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 286 (105.7 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 65/198 (32%), Positives = 109/198 (55%)

Query:     7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
             +DY  +  L  +F  QA+ TPD IAV     + +++ +L+  ++ +  +L+N+G   GS 
Sbjct:   450 ADYP-QVTLGELFSAQARHTPDAIAV-QRGNQRLSYGELERRSNRLAAFLLNEGVGPGSV 507

Query:    67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
             V +L++R  E  ++   + KAGG YLPL+ +YP   L  +L+D+   IV+T+    D L 
Sbjct:   508 VALLLDRSCELAVALFGVLKAGGAYLPLDPAYPEDRLAYMLEDSGARIVLTRNALADALR 567

Query:   127 RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
                +  ++L+ D      ++ + L        G DDIAY++Y+SG+TG+PKG++  HRG 
Sbjct:   568 LPGIELLRLDAD----RATDGDGLDEAPPCPAGPDDIAYLMYTSGSTGQPKGVMVTHRGI 623

Query:   187 VHAYKWRHRAYPYDEDDR 204
             V+      R Y     DR
Sbjct:   624 VNLCAAIRRRYDLAPGDR 641

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4KES9 ofaC "Non-ribosomal peptide synthetase OfaC" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 284 (105.0 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 68/248 (27%), Positives = 123/248 (49%)

Query:     8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
             DY    A+H     QA+RTPD +A   + GRS+++ +L++  +++   L   G      V
Sbjct:   557 DYPPGQAIHGRIEAQAQRTPDALAAC-YQGRSLSYAELNQQANVLARQLRGLGVQPDDRV 615

Query:    68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
              ++  R LE  +  +AI KAG  Y+P++ ++P   L  +L D  P  V+T+ E + RL  
Sbjct:   616 AIVARRSLETVVGLLAILKAGACYVPIDPAHPAERLNYLLQDCGPRAVLTQAELLGRLPA 675

Query:   128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
              +VP ++L         ++N ++     P +   ++AY++Y+SG+TG PKG++  HR   
Sbjct:   676 LAVPVIELNQRLWLDQTADNTQV-----PGLSAANLAYVIYTSGSTGLPKGVMVEHRTLG 730

Query:   188 HAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVI-SDEVIYDPPRLTS 241
             +   W  +A+      + +C   F      WE+   L  G  +++  + +   D   L +
Sbjct:   731 NLVDWHCQAFDLRPGSQASCLAGFGFDAMAWEVWPALCVGATLHLAPAQDGSEDLDALLA 790

Query:   242 GWVRLPLN 249
              W   PL+
Sbjct:   791 WWRAQPLD 798

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

UNIPROTKB|Q81QP7 dhbF "Nonribosomal peptide synthetase DhbF" [Bacillus anthracis (taxid:1392)]

 Score = 278 (102.9 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 75/237 (31%), Positives = 121/237 (51%)

Query:    11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
             +E  L  +F  QA   P+ IAVV  D + +T+++L++ ++ +   LI +G      V + 
Sbjct:  1517 SEMTLSQLFEKQAHIKPNAIAVVFEDEK-LTYEKLNKKSNKLARLLIAKGIGPDQLVALA 1575

Query:    71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
             M R L   +S +A+ KAG GYLPL+  YP   +  +L DAKPS V+T  +    +E    
Sbjct:  1576 MPRSLNMVVSLLAVLKAGAGYLPLDPDYPSDRISFMLHDAKPSCVLTNSDV--EIECDEE 1633

Query:   131 PKVKLENDFLSKMISENEKLH--NVD----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
              K+ +++    ++I E+EK    N+D       +    IAY++Y+SG+TG+PKG++ PH+
Sbjct:  1634 LKILIDD---IEVIEESEKYSEDNIDEMERMKPLTPSHIAYVIYTSGSTGRPKGVMIPHQ 1690

Query:   185 GAVHAYKWRHRAYPYDEDD-----REACNVFFVWEMLRPLTQGIPMYVISDEVIYDP 236
               V         + +D DD           F VWE+  PL  G  + V+   V   P
Sbjct:  1691 NVVRLLGATDHWFQFDADDVWTMFHSYAFDFSVWEIWGPLLYGGRLVVVPHTVSRSP 1747

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

TIGR_CMR|BA_2372 BA_2372 "nonribosomal peptide synthetase DhbF" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 278 (102.9 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 75/237 (31%), Positives = 121/237 (51%)

Query:    11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
             +E  L  +F  QA   P+ IAVV  D + +T+++L++ ++ +   LI +G      V + 
Sbjct:  1517 SEMTLSQLFEKQAHIKPNAIAVVFEDEK-LTYEKLNKKSNKLARLLIAKGIGPDQLVALA 1575

Query:    71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
             M R L   +S +A+ KAG GYLPL+  YP   +  +L DAKPS V+T  +    +E    
Sbjct:  1576 MPRSLNMVVSLLAVLKAGAGYLPLDPDYPSDRISFMLHDAKPSCVLTNSDV--EIECDEE 1633

Query:   131 PKVKLENDFLSKMISENEKLH--NVD----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
              K+ +++    ++I E+EK    N+D       +    IAY++Y+SG+TG+PKG++ PH+
Sbjct:  1634 LKILIDD---IEVIEESEKYSEDNIDEMERMKPLTPSHIAYVIYTSGSTGRPKGVMIPHQ 1690

Query:   185 GAVHAYKWRHRAYPYDEDD-----REACNVFFVWEMLRPLTQGIPMYVISDEVIYDP 236
               V         + +D DD           F VWE+  PL  G  + V+   V   P
Sbjct:  1691 NVVRLLGATDHWFQFDADDVWTMFHSYAFDFSVWEIWGPLLYGGRLVVVPHTVSRSP 1747

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

ASPGD|ASPL0000037093 acvA [Emericella nidulans (taxid:162425)]

 Score = 280 (103.6 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 72/248 (29%), Positives = 128/248 (51%)

Query:     1 MDSVNLSDYD-AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ 59
             +D+ N +D +  +  LH MF  +A + PDK+AVV ++ RS+T++QL+E  + +   L + 
Sbjct:  1398 LDAWNATDAEFPDTTLHAMFEKEAAQKPDKVAVV-YEQRSLTYRQLNERANRMAHQLKSD 1456

Query:    60 -GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
                   S + +++++      + +A+ K GG Y+P++  YP   +  +L+D     VI+ 
Sbjct:  1457 ISPKPNSIIALVVDKSEHMIATILAVWKTGGAYVPIDPEYPDDRIRYILEDTSAIAVISD 1516

Query:   119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
               Y+ R++  +   V+L    +S     N  + N   P     D+AYI+Y+SGTTGKPKG
Sbjct:  1517 ACYLSRIQELAGESVRLYRSDISTQTDGNWSVSN-PAPSSTSTDLAYIIYTSGTTGKPKG 1575

Query:   179 IVCPHRGAVHAYKWRHRAYPY-DEDDREACN----VF--FVWEMLRPLTQGIPMYVISDE 231
             ++  H G V+      + +   D DD    +    VF  FV +M   +  G  + +++D 
Sbjct:  1576 VMVEHHGVVNLQISLSKTFGLRDTDDEVILSFSNYVFDHFVEQMTDAILNGQTLVMLNDA 1635

Query:   232 VIYDPPRL 239
             +  D  RL
Sbjct:  1636 MRSDKERL 1643

GO:0042318 "penicillin biosynthetic process" evidence=IDA;RCA;IMP

GO:0050564 "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase activity" evidence=RCA;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0019748 "secondary metabolic process" evidence=NAS

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IEA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

UNIPROTKB|Q4KET1 ofaA "Non-ribosomal peptide synthetase OfaA" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 261 (96.9 bits), Expect = 8.6e-21, P = 8.6e-21
 Identities = 68/245 (27%), Positives = 122/245 (49%)

Query:    11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
             AE  +H      A+RTP  IA+V   G++++++QLD   + +  +L   G    + V ++
Sbjct:   464 AEQRIHARVAAWARRTPQAIALVAQ-GQALSYEQLDRRANALALHLRELGVGPDARVAIV 522

Query:    71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
               R  E  +  +AI KAG GY+PL+ ++P   L  +L D+ P  V+T+G     L   +V
Sbjct:   523 ARRSPETLVGLLAILKAGAGYVPLDPAHPAERLAFLLHDSAPRAVLTQGALRQCLPTLNV 582

Query:   131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
             P + L+N    + +    ++   +   +  + +AY++Y+SG+TG+PKG++  H+   +  
Sbjct:   583 PLIDLDN---GQWLDGPGEI--AEAAGLTAEHLAYVIYTSGSTGQPKGVMVEHQSLSNLV 637

Query:   191 KWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYV--ISDEVIYDPPRLTSGW 243
              W  RA+        +C   F      WE+   L  G  +++  +SD    +  RL + W
Sbjct:   638 DWHGRAFDLQAGSHTSCLAGFGFDAMAWEVWPALCAGATLHLAPVSDGP-EELDRLLAWW 696

Query:   244 VRLPL 248
                PL
Sbjct:   697 RAQPL 701

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

UNIPROTKB|Q0VZ70 cmdD "Chondramide synthase cmdD" [Chondromyces crocatus (taxid:52)]

 Score = 261 (96.9 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 65/177 (36%), Positives = 102/177 (57%)

Query:    10 DAEGALHYMFRNQAKRTPDKIAVV-DHDGRS-ITFKQLDEWTDIVGTYLINQGCIVGSTV 67
             +AEG +H+ F   A R PD IAVV D D  S IT+  L+E  + +  +LI QG      V
Sbjct:   478 EAEG-VHHAFEQNAARQPDAIAVVFDGDPISRITYGALNERANQLAHHLIQQGVGPDVVV 536

Query:    68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
             G+ +ER +   ++ +A+ KAGG YLPL+ +YP   L  +L DA   +++T+ ++ D L  
Sbjct:   537 GIHVERSITMIVALLAVLKAGGAYLPLDPTYPQQRLAFILADAGAQVILTQEKWFDDLPP 596

Query:   128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
              +  +V L+ D ++  +  N    N    +   D +AYI+Y+SG+TG PKG++ P R
Sbjct:   597 HTA-RV-LDLDAIAPQLDANAT-SNPPL-RATADHLAYIIYTSGSTGNPKGVLIPRR 649

GO:0009403 "toxin biosynthetic process" evidence=IDA

GO:0043042 "amino acid adenylylation by nonribosomal peptide synthase" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-46
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-41
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	9e-41
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-40
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-36
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-35
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-34
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-33
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-33
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-32
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-31
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-30
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-30
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-29
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-28
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-28
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-26
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	8e-25
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-24
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-22
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-22
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-22
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-21
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-21
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-21
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	4e-21
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-21
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-19
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	5e-19
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-18
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-17
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-17
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	2e-17
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-16
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-16
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	7e-16
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-15
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-15
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-15
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-15
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-15
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-14
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-14
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-14
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	7e-14
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-14
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-12
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-12
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-12
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-12
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-11
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-11
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-11
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	7e-11
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	7e-11
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-10
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	5e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	7e-10
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	7e-10
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-09
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-09
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-09
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-09
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	8e-09
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-08
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-08
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-08
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-08
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-08
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-08
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-08
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	8e-08
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	8e-08
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	9e-08
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-07
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-07
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-07
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-07
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-07
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	7e-07
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	7e-07
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-06
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-06
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-06
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-06
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	6e-06
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-05
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-05
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-05
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-05
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-05
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-05
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	3e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-05
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-05
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	6e-05
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-05
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	8e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-04
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-04
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-04
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-04
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-04
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-04
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	6e-04
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	7e-04
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	8e-04
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	9e-04
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	0.001
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	0.001
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.001
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	0.002
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	0.002
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	0.002
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	0.002
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	0.002
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	0.002
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.003
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	0.004

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  159 bits (406), Expect = 2e-46
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 47/218 (21%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD +AVV    +S+T+++L+E  + +  YL  +G   G  V + +ER  E  ++ +A+ K
Sbjct: 1   PDAVAVVF-GDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLK 59

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
           AG  Y+PL+ +YP   L  +L+D+   +++T                             
Sbjct: 60  AGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDP--------------------------- 92

Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREA 206
                         DD+AY++Y+SG+TG+PKG++  HRG V+   W    Y     DR  
Sbjct: 93  --------------DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138

Query: 207 CNV-----FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
                     VWE+  PL  G  + +   EV+ DP  L
Sbjct: 139 QFASFSFDASVWEIFPPLLSGATLVLAPPEVLRDPEAL 176

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  144 bits (366), Expect = 6e-41
 Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 41  TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
           T+++LDE  + +   L   G   G  V +L+    EW ++ +A+ KAG  Y+PL+ S P 
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD------ 154
             L  +L+D++  ++IT  E + +L    +  + L    +     E   L + +      
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120

Query: 155 ----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACN-- 208
                P V  DD+AYI+Y+SGTTGKPKG++  HR  +         +     DR      
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP 180

Query: 209 ---VFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
                 VWE+  PL  G  + ++      DP RL
Sbjct: 181 LHFDGSVWEIFGPLLAGGTLVLVPKFT-LDPARL 213

Length = 412

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  144 bits (365), Expect = 9e-41
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 41  TFKQLDEWTDIVGTYLINQGCI-VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
           T+++LDE  + +  +L   G +  G  V VL+ER  E  ++ +A+ KAG  Y+PL+ +YP
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
              L  +L+DA   +++T      RL    +P + L+   L+    ++           G
Sbjct: 61  AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELA--ALDDAPAPPPPDAPSG 118

Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACN---VF--FVWE 214
            DD+AY++Y+SG+TG+PKG+V  HR  V+   W  R Y  D DDR        F   V E
Sbjct: 119 PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE 178

Query: 215 MLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245
           +   L  G  + V  ++   D   L +  + 
Sbjct: 179 IFGALLAGATLVVPPEDEERDDAALLAALIA 209

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score =  143 bits (363), Expect = 5e-40
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 22/222 (9%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD IA+V +  RS+T+ +L+E  + +   L  +G   G  V +L+ER  E  ++ +AI K
Sbjct: 1   PDAIALV-YGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILK 59

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
           AG  Y+PL+ +YP   L  +L+D+   +++T            +P V LE          
Sbjct: 60  AGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILE-------EEL 112

Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR---HRAY-PYDED 202
           + +      P V  DD+AY++Y+SG+TG+PKG+  PHRG V     R   +  Y   D D
Sbjct: 113 DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV-----RLVRNTNYIALDPD 167

Query: 203 DR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           DR  +   + F    +E+   L  G  + +I  E + DP RL
Sbjct: 168 DRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRL 209

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  136 bits (343), Expect = 2e-36
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 5   NLSDYD-AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
           N    + A   +H +   QA++ P++ A+V    + +++ +L+   + +   LI  G   
Sbjct: 503 NAPATEYAPDCVHQLIEAQARQHPERPALV-FGEQVLSYAELNRQANRLAHVLIAAGVGP 561

Query: 64  GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
              VG+ +ER +E  +  +A+ KAGG Y+PL+  YP   L  +LDD+   +++T+   + 
Sbjct: 562 DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLA 621

Query: 124 RLER-TSVPKVKLEN--DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
           +L     +  + L+   D L      N +        +  D++AY++Y+SG+TG+PKG+ 
Sbjct: 622 QLPVPAGLRSLCLDEPADLLCGYSGHNPE------VALDPDNLAYVIYTSGSTGQPKGVA 675

Query: 181 CPHRGAVHAYKWRHRAYPYDEDDREACNV-----FFVWEMLRPLTQGIPMYVISDEVIYD 235
             H    +             DD             V E+   L  G  ++++  +   D
Sbjct: 676 ISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARD 735

Query: 236 PPRL 239
               
Sbjct: 736 AEAF 739

Length = 3956

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score =  130 bits (329), Expect = 2e-35
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 42/187 (22%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           LH +   QA+RTPD IAVV  D  S+T+ +L+   + +   L   G    S VGV + R 
Sbjct: 1   LHELVEAQAERTPDAIAVVCGD-ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRS 59

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            +  ++ +A+ KAG  Y+PL+ +YPP  L  +L+DA   +V+T                 
Sbjct: 60  PDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT----------------- 102

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
                                     DD+AY++Y+SG+TG+PKG+   HR A    +W  
Sbjct: 103 ------------------------DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAA 138

Query: 195 RAYPYDE 201
             +  +E
Sbjct: 139 AVFSAEE 145

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  130 bits (329), Expect = 1e-34
 Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 14/238 (5%)

Query: 7   SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
           +       +H +F  QA  TPD +A+V   G+ +T+ +LD   + +   LI+ G   G T
Sbjct: 221 APIPLRLTIHLLFEEQAATTPDAVALV-RGGQQLTYAELDARANRLARLLISLGVGPGET 279

Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
           V +L +R LE  ++ +A+ KAG  Y+PL+  YP   L  +L+D++P++++T+     R++
Sbjct: 280 VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHL--RVD 337

Query: 127 RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
              +P + L+               +     +  D +AYI+Y+SG+TG+PKG+   HR  
Sbjct: 338 DVGLPGLALD------DALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRAL 391

Query: 187 VHAYKWRHRAYPYDEDDREA-----CNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
            +        +  D DDR            V+E+   L +G  + +    +  DP  L
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAAL 449

Length = 642

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  125 bits (317), Expect = 1e-33
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 46/205 (22%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+  PD +AV   DG  +T+ +LD   + +  +LI+ G   G  V + +ER     ++ +
Sbjct: 2   AQTHPDAVAVDFWDGS-LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
           A+ KAG  Y+P++ S P   L+ +++D+  ++V+T                         
Sbjct: 61  AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLT------------------------- 95

Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED 202
                             DD AY++Y+SG+TGKPKG+V  HR   +  +           
Sbjct: 96  ---------------SSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPG 140

Query: 203 DREAC--NVFF---VWEMLRPLTQG 222
           DR     ++ F   + E+   L  G
Sbjct: 141 DRVLQFASIAFDVSILEIFTTLLAG 165

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  124 bits (315), Expect = 2e-33
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 47/218 (21%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD IA+ D D R++++ +LDE ++ +   L   G   G  VGVL+ER  +   + +AI K
Sbjct: 1   PDAIALRDDD-RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILK 59

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
           AG  Y+PL+ SYP   L+ +L+DA+P++++T                             
Sbjct: 60  AGAAYVPLDPSYPAERLQYMLEDAEPALLLTDP--------------------------- 92

Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR-- 204
                         DD+AY++Y+SG+TGKPKG+   HR  V+      R       DR  
Sbjct: 93  --------------DDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLL 138

Query: 205 EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
               + F   V E+L PL  G  + + S E + DP RL
Sbjct: 139 AVTTISFDISVLELLLPLLSGATVVIASAETVRDPERL 176

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  123 bits (310), Expect = 2e-32
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 7   SDYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGS 65
               AE  L  +    A+R PD+ A++    G  +T+++LD   + +   L   G   G 
Sbjct: 5   MRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGD 64

Query: 66  TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
            V +L+    E+ I+++A  +AG   +PL     P  L  +L+DA   ++IT  E+   L
Sbjct: 65  RVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL 124

Query: 126 ER-----TSVPKVKLENDFLSKMISENEKLHN------VDFPQVGLDDIAYIVYSSGTTG 174
           E        V  V L  D   ++    E L         D   V  DD+A+++Y+SGTTG
Sbjct: 125 EAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTG 184

Query: 175 KPKGIVCPHR 184
            PKG+V  HR
Sbjct: 185 LPKGVVLTHR 194

Length = 534

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  122 bits (308), Expect = 1e-31
 Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 25/245 (10%)

Query: 8    DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
             Y     +H +  +QA  TP+ +A+V    + +T+ +L+   + +   LI  G      V
Sbjct: 1569 GYPLARLVHQLIEDQAAATPEAVALV-FGEQELTYGELNRRANRLAHRLIALGVGPEVLV 1627

Query: 68   GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
            G+ +ER LE  +  +AI KAGG Y+PL+  YP   L  +++D+   +++T+     RL  
Sbjct: 1628 GIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL 1687

Query: 128  TS-VPKVKL--ENDFLSKMISENEKLHNVDFPQVGLDD--IAYIVYSSGTTGKPKGIVCP 182
               +  + L  E+D+L      N        P V L    +AY++Y+SG+TG+PKG    
Sbjct: 1688 PDGLRSLVLDQEDDWLEGYSDSN--------PAVNLAPQNLAYVIYTSGSTGRPKGAGNR 1739

Query: 183  HRGAVHAYKWRHRAYPYDEDDREACNVFF--------VWEMLRPLTQGIPMYVISDEVIY 234
            H   V+       AY     D     + F        VWE+  PL  G  + +       
Sbjct: 1740 HGALVNRLCATQEAYQLSAAD---VVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHR 1796

Query: 235  DPPRL 239
            DP +L
Sbjct: 1797 DPEQL 1801

Length = 3956

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score =  116 bits (294), Expect = 3e-30
 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 18/225 (8%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD  AV+D  G  +T+ +L    + +   L   G   G  V V+M +  E  ++ + I  
Sbjct: 1   PDATAVIDGAGT-LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILL 59

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
           AG  Y+P++   P     ++L  A    V+T        E   +  V  +          
Sbjct: 60  AGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAA----AAES 115

Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREA 206
                    P+V  DD+AY++++SG+TG+PKG++  HR AV+     +R +     DR  
Sbjct: 116 PAPP----PPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVL 171

Query: 207 C--NVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL 246
               + F   V+++   L+ G  + +  +    DP      W  L
Sbjct: 172 ALSALHFDLSVYDIFGALSAGAALVLPDEARRRDPDH----WAEL 212

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  117 bits (295), Expect = 6e-30
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 15/239 (6%)

Query: 9   YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
           Y  +  +H +F  Q +RTP+  A+      ++ + +L+   + +   LI +G      VG
Sbjct: 507 YPLQRGVHRLFEEQVERTPEAPALA-FGEETLDYAELNRRANRLAHALIERGVGPDVLVG 565

Query: 69  VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
           V MER +E  ++ +AI KAGG Y+PL+  YP   L  +L+D+   +++++     +L   
Sbjct: 566 VAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA 625

Query: 129 SVPKVKLEND---FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
           +  +V   +    +L     EN          +  +++AY++Y+SG+TGKPKG    HR 
Sbjct: 626 AGVQVLDLDRPAAWLEGYSEENPGTE------LNPENLAYVIYTSGSTGKPKGAGNRHRA 679

Query: 186 AVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
             +   W  +AY     D       F     VWE   PL  G  + V +     DP +L
Sbjct: 680 LSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL 738

Length = 5163

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score =  116 bits (293), Expect = 1e-29
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 23/211 (10%)

Query: 22  QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
           QA +TPD  A+ D      +++++ E    +   L  +G   G +V V + R +  T++ 
Sbjct: 467 QAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLAL 525

Query: 82  IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLS 141
            AI +AG  +LPL+T YP   L+ +L+DA+PS++IT  + + R     VP +        
Sbjct: 526 HAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRF--ADVPDLTSL----- 578

Query: 142 KMISENEKLHNVDFPQVGL---DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP 198
                N  L       + L      AYI+++SG+TG+PKG++      V+   W    YP
Sbjct: 579 ---CYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYP 635

Query: 199 YDEDDREA----CNVFF---VWEMLRPLTQG 222
              DD       C+  F   VWE   P   G
Sbjct: 636 LTADDVVLQKTPCS--FDVSVWEFFWPFIAG 664

Length = 1296

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  114 bits (286), Expect = 1e-28
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 23/244 (9%)

Query: 7    SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
            + Y A   +H +   +A+ TPD +AVV  D   +T+ +L+   + +   LI +G      
Sbjct: 4545 AGYPATRCVHQLVAERARMTPDAVAVV-FDEEKLTYAELNRRANRLAHALIARGVGPEVL 4603

Query: 67   VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
            VG+ MER  E  +  +A+ KAGG Y+PL+  YP   L  +++D+  ++++T+   + RL 
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRL- 4662

Query: 127  RTSVPK----VKLENDFLSKMISENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIV 180
               +P     + L+ D   +    ++       P V L  D++AY++Y+SG+TG+PKG+ 
Sbjct: 4663 --PIPDGLASLALDRDEDWEGFPAHD-------PAVRLHPDNLAYVIYTSGSTGRPKGVA 4713

Query: 181  CPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYD 235
              H   V+        Y    DDR    + F        +  PL  G  + VI D+ ++D
Sbjct: 4714 VSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASV-VIRDDSLWD 4772

Query: 236  PPRL 239
            P RL
Sbjct: 4773 PERL 4776

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  111 bits (280), Expect = 5e-28
 Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 15/241 (6%)

Query: 6    LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
               Y     +H     QA R P+ IAVV    + +++ +LD   + +   L  +G     
Sbjct: 1996 PEAYPRGPGVHQRIAEQAARAPEAIAVV-FGDQHLSYAELDSRANRLAHRLRARGVGPEV 2054

Query: 66   TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
             V +  ER  E  ++ +A+ KAGG Y+PL+ +YP   L  +L+D+  ++++T+   ++RL
Sbjct: 2055 RVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERL 2114

Query: 126  E-RTSVPKVKLE-NDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                 V ++ L+ +   +               Q+  +++AY++Y+SG+TG PKG+   H
Sbjct: 2115 PLPAGVARLPLDRDAEWADYPDTAPA------VQLAGENLAYVIYTSGSTGLPKGVAVSH 2168

Query: 184  RGAVHAYKWRHRAYPYDEDDRE---ACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPR 238
               V   +     Y     D E       F     +   PL  G  + +I D+ ++DP +
Sbjct: 2169 GALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARV-LIRDDELWDPEQ 2227

Query: 239  L 239
            L
Sbjct: 2228 L 2228

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  107 bits (268), Expect = 2e-26
 Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 22/244 (9%)

Query: 6    LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
             + Y +E  +H +   Q  RTP+  A+V  D + +++ +L+   + +   LI  G  VG 
Sbjct: 3088 AAAYPSERLVHQLIEAQVARTPEAPALVFGD-QQLSYAELNRRANRLAHRLIAIG--VGP 3144

Query: 66   T--VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
               VGV +ER +E  ++ +A+ KAGG Y+PL+  YP   L  +++D+   +++T+   ++
Sbjct: 3145 DVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLE 3204

Query: 124  RLER-TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIV 180
            +L        + L+   L+     N        P   +   ++AY++Y+SG+TGKPKG+ 
Sbjct: 3205 QLPAPAGDTALTLDRLDLNGYSENN--------PSTRVMGENLAYVIYTSGSTGKPKGVG 3256

Query: 181  CPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYD 235
              H    +   W   AY  D +DR    + F         L  L  G  + V+ D  ++D
Sbjct: 3257 VRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCL-VVRDNDLWD 3315

Query: 236  PPRL 239
            P  L
Sbjct: 3316 PEEL 3319

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score =  102 bits (256), Expect = 8e-25
 Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 22   QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
            QA++TP++IA+V  DG S+ + +L    + +  YL ++G      V +  ER  +  +  
Sbjct: 1140 QARQTPERIALV-WDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198

Query: 82   IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFL 140
            +AI KAGG Y+PL+  YP   L  +L D+   +++T+   ++RL +   V  + L++  L
Sbjct: 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHL 1258

Query: 141  SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD 200
                S+   LH         D++AY++Y+SG+TG+PKG+   H       +W    Y  D
Sbjct: 1259 DSWPSQAPGLHLHG------DNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALD 1312

Query: 201  EDD---REACNVF--FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR 245
            + D   ++A   F   VWE   PL  G  + +       DP R+    V+
Sbjct: 1313 DSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAE-LVQ 1361

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  101 bits (253), Expect = 1e-24
 Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A + PD+ A+V   G ++T+ +L E  D +   L+  G   G  V V   +  +   + +
Sbjct: 1   AAKHPDRPALVV-GGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
           A  KAG  Y+PL+ S P   +  +L+ A P+ ++                          
Sbjct: 60  ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADP----------------------- 96

Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED 202
                             DD+AYI+++SG+TGKPKG+   H        W    +   E 
Sbjct: 97  ------------------DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEG 138

Query: 203 DREACNVF---F---VWEMLRPLTQGIPMYVISDEVIYDP 236
           D  + N     F   V+++   L  G  +YVI  E I DP
Sbjct: 139 DVFS-NQAPFSFDLSVFDLFPALASGATLYVIPKEQIADP 177

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 18  MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           +    A+R  DK A V    + +T+ +L+         L   G   G  V +       W
Sbjct: 10  LLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHW 68

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG----------------EY 121
            I+ +   KAG   +PL T Y       +L       +   G                E+
Sbjct: 69  VIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEH 128

Query: 122 MDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVC 181
           +   E         +    +  ++  +       P+V  DD+A I+++SGTTG+PKG + 
Sbjct: 129 VVICETEEDDPHTEKMKTFTDFLAAGDPAER--APEVDPDDVADILFTSGTTGRPKGAML 186

Query: 182 PHRGAVHAYK-WRHRAYPYDEDDREAC-NVFF 211
            HR  +     W        E DR    N FF
Sbjct: 187 THRQLLSNAADWAEYL-GLTEGDRYLAANPFF 217

Length = 513

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 60/184 (32%)

Query: 28  DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87
           D+IA+VD  GRS+T+ +LD  +  +   L+  G + G  V VL  +  E+ + Y+AI +A
Sbjct: 1   DRIALVD-GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRA 59

Query: 88  GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISEN 147
           GG  +PL  SYP A L  +L D++PS+++                               
Sbjct: 60  GGVAVPLNPSYPAAELAYILSDSQPSLLV------------------------------- 88

Query: 148 EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH-------RGAVHAYKWRHRAYPYD 200
                         D A I+Y+SGTTG+PKG+V  H       R  V A++W        
Sbjct: 89  --------------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-------T 127

Query: 201 EDDR 204
             D 
Sbjct: 128 ASDV 131

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 93.9 bits (233), Expect = 9e-22
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%)

Query: 8    DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
            +Y  E  +H +F  Q +RTPD +A+   + R +++ +L+   + +   LI +G      V
Sbjct: 3052 EYPLERGVHRLFEEQVERTPDAVALAFGEQR-LSYAELNRRANRLAHRLIERGVGPDVLV 3110

Query: 68   GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
            GV +ER LE  +  +AI KAGG Y+PL+  YP   L  +L+D+   +++++         
Sbjct: 3111 GVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQ-------SH 3163

Query: 128  TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
              +P  +           EN    N     +  +++AY++Y+SG+TGKPKG+   H    
Sbjct: 3164 LRLPLAQGVQVLDLDRGDENYAEANPAIRTMP-ENLAYVIYTSGSTGKPKGVGIRHSALS 3222

Query: 188  HAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242
            +   W  +AY     DR      F     V E+  PL  G  + V++    +  P L   
Sbjct: 3223 NHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARV-VLAGPEDWRDPALLVE 3281

Query: 243  WVR 245
             + 
Sbjct: 3282 LIN 3284

Length = 5163

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 15  LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           L       A    D+ A++D   GR++T+ +L+     +   L  +G   G  V +L   
Sbjct: 7   LDSASLLFASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPN 66

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
            LE+ + ++A+  AG         Y PA +   + D+   + IT  E  ++L   ++  V
Sbjct: 67  SLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPV 126

Query: 134 KL--ENDFLSKMISE--NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
            L    D  S  I +             +  DD+A + YSSGTTG+ KG++  HR  +
Sbjct: 127 VLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLI 184

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 20  RNQAKRTPDKIAVV----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
           R+     PD  A++    D   R +T+  L      +   L + G + G  V + M    
Sbjct: 17  RHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSP 76

Query: 76  EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
           E  I+ +A  + G     +        +   + D  P ++I                +  
Sbjct: 77  EAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG---KEIALLE 133

Query: 136 END--------FLSKMISENEKLHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
           + D             +  +E +       +F  +  DD  +++Y+SGTTGKPKGIV  H
Sbjct: 134 DADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSH 193

Query: 184 RG-AVHAYKWRHRAYPYDEDDR 204
            G  V               DR
Sbjct: 194 GGYLVEHRLTAKFHGDLLPGDR 215

Length = 528

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L  +    A+R PD+ A+    GR +T+ +LDE +D    YL   G   G  V +++  C
Sbjct: 1   LADLLERAARRFPDRPALTFF-GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            ++ I+Y  I KAG   +P+   Y P  LE  L+D+   ++I    + D L   +     
Sbjct: 60  PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASGA----- 114

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
                                 ++  DD+A + Y+ GTTG PKG +  HR 
Sbjct: 115 ----------------PLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRN 149

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 91.4 bits (228), Expect = 4e-21
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
             D    +  + R+ A++ PDK AV   DGR  T+ +LDE  + +   L   G   G  V
Sbjct: 1   MQDYPLTIGRILRHGARKHPDKEAVYF-DGRRTTYAELDERVNRLANALRALGVKKGDRV 59

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
            V      E+  +Y A+ K G    P+     P  +  +L+DA+  +V+   E++  L  
Sbjct: 60  AVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAA 119

Query: 128 -----TSVPKVKLENDFLSKMISENEKLHN-----------VDFPQVGLDDIAYIVYSSG 171
                 +V  V +E D          ++              DFP +  +D A ++Y+SG
Sbjct: 120 ILPQLPTVRTVIVEGD--GPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSG 177

Query: 172 TTGKPKGIVCPHR 184
           TTG PKG+V  HR
Sbjct: 178 TTGHPKGVVLSHR 190

Length = 521

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 91.8 bits (228), Expect = 5e-21
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 8    DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
            +   +  LH +F  QA RTP   A+    G+++++ +LD   + +   L  +G      V
Sbjct: 2183 EARLDQTLHGLFAAQAARTPQAPALT-FAGQTLSYAELDARANRLARALRERGVGPQVRV 2241

Query: 68   GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
            G+ +ER LE  +  +AI KAGG Y+PL+  YP   L  +++D+   ++++     + L  
Sbjct: 2242 GLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE 2301

Query: 128  --TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                V +  LE+D  +     +  L  +  PQ      AY++Y+SG+TGKPKG+V  H
Sbjct: 2302 LPAGVARWCLEDDAAALAAYSDAPLPFLSLPQ----HQAYLIYTSGSTGKPKGVVVSH 2355

Length = 4334

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 46/232 (19%)

Query: 18  MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
               + K  PD +A++        +IT+++L E    + + L++ G   G  V +     
Sbjct: 21  RLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANR 80

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERT----- 128
            EW I+ +AI   G   +P+ ++  P  L  +L++++  ++  + + + D +        
Sbjct: 81  PEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP 140

Query: 129 -------SVPKVKLENDFLSKMIS----ENEKLHNVDFPQVG-------LDDIAYIVYSS 170
                   +  V+   +  + ++     E   L  +D   +         DD+A I+Y+S
Sbjct: 141 KVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTS 200

Query: 171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQG 222
           GTTG PKG++  HR  +                     V  + E+L P+  G
Sbjct: 201 GTTGTPKGVMLTHRNLLA-------------------QVAGIDEVLPPIGPG 233

Length = 613

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 85.3 bits (212), Expect = 5e-19
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+  PD  A  D+ G  +T+ QL E +D +  ++ +      S + V      E   +++
Sbjct: 12  AQTQPDFPAY-DYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFL 70

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
              KAG  Y+P++ S P   +E +++ AKPS++I   E    LE   +P + L+     K
Sbjct: 71  GAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE--LPLEILGIPVITLDE---LK 125

Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
            I      ++ D   V  DD  YI+++SGTTGKPKG+
Sbjct: 126 DIFATGNPYDFDHA-VKGDDNYYIIFTSGTTGKPKGV 161

Length = 503

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 81.8 bits (203), Expect = 9e-18
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 6/164 (3%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
            D   +   DG   T+  LD  +  +   L+  G   G  V V +E+  E    Y+A  +
Sbjct: 16  RDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLR 75

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSVPKVKLENDFLSK 142
           AG  +LPL T+Y  A L+  + DA+P++V+        L         P V+  +   + 
Sbjct: 76  AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTG 135

Query: 143 MISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHR 184
            + E       DF  V  G DD+A I+Y+SGTTG+ KG +  H 
Sbjct: 136 SLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHG 179

Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 34  DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
              G  +TF  L +    +   L   G   G  V ++    +E+   ++    AGG    
Sbjct: 5   ADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSA 64

Query: 94  LETSYPPALLESVLDDAKPSIVITKGEYMDRL-----ERTSVPKVKLENDFLSKMIS--- 145
              SY P  L   L  +KP ++    + +D++     E   V ++ + +     ++    
Sbjct: 65  ANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIED 124

Query: 146 ------ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
                   E          G DD A ++YSSGTTG PKG++  H+  +
Sbjct: 125 LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNII 172

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 20/183 (10%)

Query: 19  FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
           ++  A+  PDKIAVVD+ G S T+  LD     +  +L+ +G   G  V   +    E+T
Sbjct: 29  WQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFT 88

Query: 79  ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT-----KGEYMDRLE--RTSVP 131
           I Y+A  K G   +PL  S+  A L  VL+  +  +        +   +D +   +  +P
Sbjct: 89  IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP 148

Query: 132 KVK-----------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
           +++             +  LS++I++ E L          D++A ++++SGT G PKG++
Sbjct: 149 QLQQIVGVDKLAPATSSLSLSQIIADYEPLT--TAITTHGDELAAVLFTSGTEGLPKGVM 206

Query: 181 CPH 183
             H
Sbjct: 207 LTH 209

Length = 547

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 52/271 (19%)

Query: 13  GALHYMFRNQAKRTPDKIAVV--------DHDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
           GA+H +F + A++ PD+  VV            RS T+KQ++E ++I+  YL+  G   G
Sbjct: 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRG 295

Query: 65  STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS--IVITKG--- 119
             V +   R ++  ++ + + KAG  +  ++ +YPPA     L  AKP   IVI K    
Sbjct: 296 DVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTL 355

Query: 120 -----EYMDR-LE-RTSVPKVKLEND------FLSKMISENEKLHNVDFPQ-------VG 159
                +Y+D+ LE RT +P + L++D       L     E + L      +       VG
Sbjct: 356 DQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEG--GETDVLAPYQALKDTPTGVVVG 413

Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------ 213
            D    + ++SG+ G PKG++  H    + + W  + +   E+D+      F        
Sbjct: 414 PDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDK------FTMLSGIAH 467

Query: 214 -----EMLRPLTQGIPMYVISDEVIYDPPRL 239
                +M  PL  G  + V + + I  P RL
Sbjct: 468 DPIQRDMFTPLFLGAQLLVPTADDIGTPGRL 498

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 45/197 (22%)

Query: 39  SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
            IT+ +L E  D +   L  +G   G  V + M+   ++ I+Y AI +AG   +P+    
Sbjct: 1   VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60

Query: 99  PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
             A LE +L+D+   ++I   E                                      
Sbjct: 61  REAELEHILNDSGARVLIVGSE-------------------------------------- 82

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDRE-ACNVFF-----V 212
            LDD+A I Y+SGTTG PKG +  HR  +              D    A    F      
Sbjct: 83  -LDDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQ 141

Query: 213 WEMLRPLTQGIPMYVIS 229
             M  P+  G  + +++
Sbjct: 142 GSMNAPIYTGATLVLLT 158

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 27/182 (14%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD++A+V    R +T+ +L+E  + +  YLI QG   G  VG+     +E+  + +   K
Sbjct: 17  PDRVALV-CGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFK 75

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPKVKL--------E 136
           A    + +   Y    L  +LDD+    ++ + E+  R+      +PK++          
Sbjct: 76  ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSG 135

Query: 137 NDFLSKMISENEKLHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           ND L   +   + L       DF +   DD+ Y++Y+ GTTG PKG++           W
Sbjct: 136 NDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM-----------W 183

Query: 193 RH 194
           R 
Sbjct: 184 RQ 185

Length = 533

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 13/170 (7%)

Query: 17  YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCL 75
           Y    +A   PD+IA++  +   +T+KQL E+   V  YLI +     G  + +L +  L
Sbjct: 6   YWIEKRAYLHPDRIAIITEE-EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSL 64

Query: 76  EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE----RTSV- 130
           E+ +   AI K     +PL        L   L D+  +++  +  + +        + V 
Sbjct: 65  EYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQ 124

Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
             + + +      + E E     +F +        I Y+SGTTGKPKG V
Sbjct: 125 RVISITS------LKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAV 168

Length = 496

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 76.0 bits (188), Expect = 7e-16
 Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 53/203 (26%)

Query: 38  RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
           ++IT+ +L E    +   LI  G   G  V +L E   EW I+ +AI  AG   +P+  +
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 98  YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
             P  +  +L+D+   +V                    E+                    
Sbjct: 64  SSPEEVAYILNDSGARVVFV------------------EDK------------------- 86

Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDEDDR-----EACNV 209
              DD+A ++Y+SGTTG PKG++  HR       A        P    DR        +V
Sbjct: 87  --PDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALL---EVIPLSPGDRVLSFLPLAHV 141

Query: 210 F--FVWEMLRPLTQGIPMYVISD 230
           F   + E L PL+ G  +     
Sbjct: 142 FEQRLGEYL-PLSSGARVNFAES 163

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 24/221 (10%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+  P  IA   + G+ +T++QL E +D +  ++  +     S + V         ++++
Sbjct: 10  AETYPQTIAY-RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFL 68

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
              K+G  Y+P++TS P   +E +++ A P +VI   E       T +  +         
Sbjct: 69  GSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQ---- 124

Query: 143 MISENEKLHNVDFPQ-VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE 201
             +E      V F   V  DD  YI+Y+SG+TG PKG+   H   V    W         
Sbjct: 125 --AETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNW--------- 172

Query: 202 DDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSG 242
                   F + E  + L Q    +     V+   P L SG
Sbjct: 173 ----MLADFPLSEGKQFLNQ--APFSFDLSVMDLYPCLASG 207

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 38/219 (17%)

Query: 12  EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVL 70
           E +L +     A+R PDK A+V   GR+I++++L E  + +  YL  + G   G  V + 
Sbjct: 9   ETSLFHNLEVSARRYPDKTAIV-FYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLY 67

Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-- 128
           M+   ++ I+Y AI +A    +P+        L   + D+   + I   E   ++     
Sbjct: 68  MQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVG 127

Query: 129 ----------------------SVP-----KVKLENDFLSKMISENEKLHNVDFP---QV 158
                                 +VP     +  L+      +++  E L     P     
Sbjct: 128 NLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTA 187

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRG----AVHAYKWR 193
           G DD+A + Y+SGTTG PKG +  HR     AV +  W 
Sbjct: 188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS 226

Length = 546

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 44/168 (26%)

Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
           GR  T+ +L E  + +   L+  G   G  V ++++ C E+  ++ A++K G   +P+ T
Sbjct: 1   GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60

Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFP 156
           +     L  +LD +   +++                                        
Sbjct: 61  ALRGEELAHILDHSGARLIVV--------------------------------------- 81

Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
                D A I+Y+SGTTG PKG++  H   + A +   R      DD 
Sbjct: 82  -----DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV 124

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 14/186 (7%)

Query: 18  MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           + R  A+R PDK A+V  D RS T+ +LD   + V   L++ G   G  V  L      +
Sbjct: 16  ILRRSARRYPDKTALVFGD-RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAY 74

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKL 135
            + ++A  +AG  ++P+        L  +LD +     +         E     +P   L
Sbjct: 75  ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTL 134

Query: 136 ENDFLSKMISENEKLHNVD---------FPQVGL--DDIAYIVYSSGTTGKPKGIVCPHR 184
               +           +            P V L  DD+A I+Y+SGT   PKG +  HR
Sbjct: 135 ILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHR 194

Query: 185 GAVHAY 190
             +  Y
Sbjct: 195 ALIAEY 200

Length = 523

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 22  QAKRTPDK----IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           +A   PD     +   D +  ++T+ +LD     +   L   G   G  V +L    L++
Sbjct: 2   RAAAQPDARYTFLFDDDDEEETLTYAELDRRARAIAARLQALGA-PGDRVLLLAPPGLDF 60

Query: 78  TISYIAIHKAGGGYLPLETSYPP-------ALLESVLDDAKPSIVITKGEYMDRLER-TS 129
             ++     AG   +P     PP       A L ++L DA    V+T    +  L    +
Sbjct: 61  VAAFFGCLYAGAIAVPA---PPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALA 117

Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
            P   L     +  ++          P    DDIA++ Y+SG+TG PKG++  H   +  
Sbjct: 118 APAALLLLLIAADDLAALAAADWRP-PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLAN 176

Query: 190 YKWRHRAYPYDEDDR 204
            +   RA+  D DD 
Sbjct: 177 LRAIARAFGLDPDDV 191

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 32/203 (15%)

Query: 12  EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
           E  L    R  A+  P + A++ + G  IT+ +LDE +D     L  +G   G  V V +
Sbjct: 32  ERPLTEYLRAWARERPQRPAIIFY-GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFL 90

Query: 72  ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
             C ++ I +  I K G  ++P+   +    L   L+DA   +++   +    +E+    
Sbjct: 91  PNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVR-A 149

Query: 132 KVKLEN-------DFL-------------------SKMISENEKLHN----VDFPQVGLD 161
           +  L +       D L                   +  I     L      V  P   LD
Sbjct: 150 ETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALD 209

Query: 162 DIAYIVYSSGTTGKPKGIVCPHR 184
            +A + Y+ GTTG PKG     R
Sbjct: 210 ALAALNYTGGTTGMPKGCEHTQR 232

Length = 567

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 7/176 (3%)

Query: 16  HYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
             M R  A R PD  A+VD   G  +T+ +L    + V   L  +G      V V+    
Sbjct: 4   FEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNS 63

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPA-LLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
           ++  I+ +A+H+ G     +     PA + E +      + VI     +      S   V
Sbjct: 64  VDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGV 123

Query: 134 KLENDFLSKMISENEKLHN---VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
           ++    L  ++   E       ++ P    +  A++ Y+SGTTG PKG V P R A
Sbjct: 124 RVL--ALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAA 177

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 8    DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
            DY  E +   +F  Q    P +IA    D +  ++ +L+   + +G  L   G  V   V
Sbjct: 3715 DYPLEQSYVRLFEAQVAAHPQRIAASCLD-QQWSYAELNRAANRLGHALRAAGVGVDQPV 3773

Query: 68   GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAK-PSIVITKG------E 120
             +L ER L+     +   KAG GYLPL+   P   L+ +++ ++ P +V +         
Sbjct: 3774 ALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARA 3833

Query: 121  YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKG 178
             +D L   + P++ +  +  +  ++     HN   P +  G D++AY++Y+SG+TG PKG
Sbjct: 3834 LLDELGCANRPRLLVWEEVQAGEVAS----HN---PGIYSGPDNLAYVIYTSGSTGLPKG 3886

Query: 179  IVCPHRG 185
            ++   RG
Sbjct: 3887 VMVEQRG 3893

Length = 4334

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 22  QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
           +A  TPD+ A+   + + +TF +L E    V   L   G   G  V +LM+  +E  +  
Sbjct: 11  RAFLTPDRTAIEF-EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVI 69

Query: 82  IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV-KLENDFL 140
            A+ + G   + L T      L   LDDA+   +IT  ++  +L      K  +L N   
Sbjct: 70  HALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPK 129

Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
            +   + E      F    LD++A I+Y+SGTTGKPKG++
Sbjct: 130 EEAEIQEE------FD---LDEVATIMYTSGTTGKPKGVI 160

Length = 483

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 14  ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           A++++ R+  +   DKIA+   DG S+T+ +L E  +  G  L   G    + V +++  
Sbjct: 6   AVYFLDRHLNEGRGDKIALYYDDG-SLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
             E+  ++    K G   +P+ T   P      L+D++  +++   E  + L      K 
Sbjct: 65  TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVL------KP 118

Query: 134 KLEND-FLSKMI----SENEKLHNVDFPQVGL----------DDIAYIVYSSGTTGKPKG 178
            L+ D  L  +I    +    L                    DD+A+ +YSSG+TG+PKG
Sbjct: 119 ALQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKG 178

Query: 179 IVCPHRGAVHAYKWRHRAYPYD-----EDDR--EACNVFFVW----EMLRPLTQG 222
           +V  H    H       AY  +     EDD    A  +FF +     +  PL+ G
Sbjct: 179 VVHLH----HDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVG 229

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           LH++  + A R PD  A+V HD R++T+  L E    + + L   G   G  V + +++ 
Sbjct: 2   LHHLLEDAAARLPDATALVHHD-RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKR 60

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVPK 132
           LE   +      AGG ++P+        +  +L D    +++T  E +D L         
Sbjct: 61  LETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHD 120

Query: 133 VK--LENDFLSKMISENEKLHNVDFPQ------------VGLDDIAYIVYSSGTTGKPKG 178
           ++  +     +     +       +P+            V   D+A I+Y+SG+TG+PKG
Sbjct: 121 LRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKG 180

Query: 179 IVCPHRGAV 187
           +V  HR  V
Sbjct: 181 VVLSHRNLV 189

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 54/208 (25%)

Query: 35  HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94
              +S+T+++L +  +     L   G   G  V +L+    E   +++A  KAG   + L
Sbjct: 6   CGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65

Query: 95  ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD 154
                P  LE +LDD+  ++++T+                                    
Sbjct: 66  NPLLTPQDLEHILDDSGAALLVTEA----------------------------------- 90

Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD-----EDDR--EAC 207
                 DDIAY +Y+SGTTGKPKG++  HR  +        A+  +       DR   + 
Sbjct: 91  ------DDIAYWLYTSGTTGKPKGVMHRHRDPL----TFAEAFARELLGLQPGDRIFSSS 140

Query: 208 NVFFVWEMLRPLTQGIPMYVISDEVIYD 235
            +FF + +   L    P++  +  V+  
Sbjct: 141 KLFFAYGLGNSLL--FPLFSGASAVLLP 166

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 31/153 (20%)

Query: 36  DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
           DG  R+ T+ +L    + + + L   G   G  VG+ M    E  ++ +AI K G   +P
Sbjct: 2   DGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVP 61

Query: 94  LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNV 153
           + + + P  + + L DA+  ++IT   ++ R +R  +                       
Sbjct: 62  IFSGFGPDAVATRLQDAEAKVLITADGFLRRGKRVDL----------------------- 98

Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
                  DD A I+Y+SGTTGKPKG V  H G 
Sbjct: 99  ------KDDPAMIIYTSGTTGKPKGTVHTHAGF 125

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 19  FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
           F   A R PD+ A++  + +SI++ +L+   +    +   +G   G  V +LME   E+ 
Sbjct: 43  FEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYL 101

Query: 79  ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE-------RTSVP 131
            +++ + K G     L T    A+L   L+      +I   E ++  E       R    
Sbjct: 102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRL 161

Query: 132 KVKLENDFLSKMISENEKLHNVDFP--------QVGLDDIAYIVYSSGTTGKPKGIVCPH 183
            V   +        E+        P         V   D A+ +Y+SGTTG PK  V  H
Sbjct: 162 WVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221

Query: 184 RGAVHAYKW 192
              + A   
Sbjct: 222 MRWLKAMGG 230

Length = 600

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 29/176 (16%)

Query: 9   YDAEGA-----LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
           Y A G      L  +    A R PD+ AVVD   R +T+++LD   D +   L+  G   
Sbjct: 6   YRAAGYWGDQTLGDLLAANAARHPDRTAVVD-GPRRLTYRELDAAVDRLAAGLLALGIGP 64

Query: 64  GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
           G  V V +    E+ I Y A+ K G   +    ++    +      ++    I    +  
Sbjct: 65  GDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRFSG 124

Query: 124 RLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
                            + +  E             L D+A    S GTTG PK I
Sbjct: 125 --------------FDYAALAREL---------LEELPDVALFQLSGGTTGLPKLI 157

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 22  QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
            A+  P ++A VD   GR  T+ +LD     +   L  +GC+ G  + VL    +     
Sbjct: 4   HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63

Query: 81  YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL 140
           + A  + G  Y+PL      + L+++L DA+P ++         L   +V   + + + L
Sbjct: 64  HFACARVGAIYVPLNWRLSASELDALLQDAEPRLL---------LGDDAVAAGRTDVEDL 114

Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
           +  I+  + L   D P +  + ++ I+++SGT+G+PKG++   R     
Sbjct: 115 AAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQT 163

Length = 488

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 36/153 (23%)

Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
           +++ +L E +  V   L + G   G  V  L+ R  E  ++ +A  + G  Y+PL T++ 
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60

Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
           P  +E  L  +   +V+T      +L+                                 
Sbjct: 61  PKAIEYRLGHSGAKVVVTNAANRGKLD--------------------------------- 87

Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRG--AVHAY 190
            DD+   +Y+SGTTG PKG+  P     A +AY
Sbjct: 88  -DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAY 119

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 20/182 (10%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD+ AVV  D R  T+++  +    + + L   G   G  V VL         ++  +  
Sbjct: 18  PDRTAVVYGD-RRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPM 76

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE-----RTSVPKVKLENDFLS 141
           AG   +PL T      +  +L+ ++  ++    E++   E      ++   +  E   +S
Sbjct: 77  AGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVIS 136

Query: 142 KMIS-----ENEKL---HNVDFPQVGLDD----IAYIVYSSGTTGKPKGIVCPHRGA-VH 188
                    + E L    + D   +  DD    I+ + Y+SGTTG PKG+V  HRGA ++
Sbjct: 137 PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPIS-LNYTSGTTGNPKGVVYTHRGAYLN 195

Query: 189 AY 190
           A 
Sbjct: 196 AL 197

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 41/205 (20%)

Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
            ++++L E +      L + G   G  V  L+ R  E  ++ +   K G  Y PL +++ 
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVG 159
           P  +   L+  +  ++IT  E     ERT                               
Sbjct: 61  PEPIRDRLELGEAKVLITTPEL---YERT------------------------------D 87

Query: 160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------ 213
            +D A + ++SGTTGKPKG++  HR  V  Y           DD   C     W      
Sbjct: 88  PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTSY 147

Query: 214 EMLRPLTQGIPMYVISDEVIYDPPR 238
            ++ PL  G+ + V  DE  +D  R
Sbjct: 148 GIIAPLLNGVTLVV--DEGEFDAER 170

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL-ETSY 98
           I++K+++E    +G+ L   G   G  +G+  E   EW I+  A        +PL +T  
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65

Query: 99  PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
             A+ E +L++ + SIV             +V     E   L ++  +N+       P  
Sbjct: 66  EEAI-EYILNETEISIVFC----------DAVKVYSFEE--LEELGKKNKVPPTPPKP-- 110

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDED 202
             +D+A I+Y+SGTTG PKG++  H      V         +    D
Sbjct: 111 --EDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTD 155

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 43/172 (25%)

Query: 34  DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
           D      TF QL + ++ +   L   G   G  VGV + +  E  I+++A++K G   +P
Sbjct: 1   DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60

Query: 94  LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNV 153
           L   + P  +E  L D+   +++T G                                  
Sbjct: 61  LSVLFGPDAVEHRLRDSGARVLVTDGS--------------------------------- 87

Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDED 202
                  DD A ++Y+SGTTG PKG +  HR   G +   +      P   D
Sbjct: 88  -------DDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGD 132

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 13/173 (7%)

Query: 21  NQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
             A+ TPDK AV+    G  +T+++LDE ++ +     + G   G  V + ME  L +  
Sbjct: 5   IHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64

Query: 80  SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD--RLERTSVPKVKLEN 137
              A  ++G  Y  + +   PA    ++DD+    +IT    +D  R      P V+   
Sbjct: 65  VCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH-- 122

Query: 138 DFLSKMISENEKLHNV-----DFPQVGLDDI---AYIVYSSGTTGKPKGIVCP 182
             +     E E            P   + D      ++YSSGTTG+PKGI  P
Sbjct: 123 RLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRP 175

Length = 511

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 30/146 (20%)

Query: 39  SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
            +T+ +LD+  D +   L   G   G  V   +    E+ + Y+A  + G    P+   Y
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 99  PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
               L  +L  A+  ++    E+                                D+  +
Sbjct: 61  RERELGFILRQARARVLFVPDEF-----------------------------RGFDYAAM 91

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHR 184
             DD+A ++Y+SGTTG+PKG++  H 
Sbjct: 92  P-DDVALLLYTSGTTGEPKGVMHTHN 116

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 44/207 (21%), Positives = 65/207 (31%), Gaps = 54/207 (26%)

Query: 41  TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
           TF +L E +D    +L + G   G  V VL+ R  E     +   K G  ++P  T   P
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGL 160
             +   L+ A    ++T                                           
Sbjct: 62  KDIRYRLERAGARAIVTSA----------------------------------------- 80

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR-GAVHAYKWRHRAYPYD--EDDREACNVFFVW---- 213
           DD A + ++SGTTG PK ++  H     H       AY  D   DD         W    
Sbjct: 81  DDPALLYFTSGTTGLPKMVLHTHSYPLGHLVT---GAYWLDLRPDDLHWTIADPGWAKGA 137

Query: 214 --EMLRPLTQGIPMYVISDEVIYDPPR 238
              +  P   G  ++V      +D  R
Sbjct: 138 WSSLFAPWLLGAAVFV-YHGRRFDAER 163

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 30/184 (16%)

Query: 24  KRTPDKIAVVDHDGRSITFKQLDEWTDIVGTY---LINQGCIVGSTVGVLMERCLEWTIS 80
           KR PD+ A+V      +T+ QL    D +  Y       G   G  V +L     E  ++
Sbjct: 23  KRYPDRPALVL-GDTRLTYGQL---ADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMA 78

Query: 81  YIAIHKAGGGYLPLETSYPPALLES---VLDDAKPSI-VITKGEYMDRLE--RTSVPKVK 134
             A   AG     L   +P   L+    VL+DA  S  ++    +++R       VP +K
Sbjct: 79  IGAAQLAGLRRTAL---HPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLK 135

Query: 135 ---------LENDFLSKMIS-ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                       D L+         L     P     DIA + Y+ GTTGKPKG++  HR
Sbjct: 136 HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALP----PDIAGLAYTGGTTGKPKGVMGTHR 191

Query: 185 GAVH 188
               
Sbjct: 192 SIAT 195

Length = 524

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 13/178 (7%)

Query: 38  RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
              T+ Q+ +    +   L + G   G  + +L + C EW I+ +AI  AG   +PL  +
Sbjct: 5   HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64

Query: 98  YPPALLESVLD--DAKPSIV-------ITKGEYMDRLERTSVPKVKLENDFL--SKMISE 146
                +  VL+  DAK   V         K    + L    +       D      +++ 
Sbjct: 65  LTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAA 124

Query: 147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
            E L     P    +D+A IVY+SGTTG+PKG++        A +          +DR
Sbjct: 125 TEPLQGR--PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDR 180

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 25/168 (14%)

Query: 34  DHDGRSI--TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91
              G ++  T+ QL      VG  L  Q    G  V +L  + +++   + A  KAG   
Sbjct: 61  SAAGCAVELTWTQLGVRLRAVGARL-QQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIA 119

Query: 92  LPLETSYPPAL------LESVLDDAKPSIVITKG-------EYMDRLERTSVPKVKLEND 138
           +PL   + P L      L++ L DA+P++V+T          ++  L R   P+V   + 
Sbjct: 120 VPL---FAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDA 176

Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
                   +    +    ++  DD++++ Y+SG+T  P G+   HR  
Sbjct: 177 I------PDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAV 218

Length = 612

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 23/242 (9%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
            Y+A  A   + RN  +    K A +D D  S+++ +L+     +G  L   G      V
Sbjct: 2   KYNA--AEDLLDRNVVEGRGGKTAFID-DISSLSYGELEAQVRRLGAALRRLGVKREERV 58

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY------ 121
            +LM   +++ I+++   +AG   + L T         +L+D++  +V   GE       
Sbjct: 59  LLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKA 118

Query: 122 ----MDRLERTSVPKVKL--ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGK 175
                  LE   V       E      + +E+E+           DD A+ +YSSG+TG 
Sbjct: 119 ALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPA---ATQADDPAFWLYSSGSTGM 175

Query: 176 PKGIVCPHRGAVH-AYKWRHRAYPYDEDDR--EACNVFFVWEMLRPLTQGIPMYVISDEV 232
           PKG+V  H      A  +        EDD    A  +FF + +   LT   PM V +  V
Sbjct: 176 PKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALT--FPMSVGATTV 233

Query: 233 IY 234
           + 
Sbjct: 234 LM 235

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 18/186 (9%)

Query: 15  LH-YMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
           LH Y F   ++   D+  ++D   GR  T+  ++  +  V   L   G   G  V +L+ 
Sbjct: 25  LHDYCFERLSEF-SDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLP 83

Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--- 129
            C E+ ++++   + G         Y PA +      +   ++IT+  Y+D+L+  +   
Sbjct: 84  NCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDD 143

Query: 130 -VPKVKLENDF-----LSKMISENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIVC 181
            V  V +++        S++   +E     + P+V +  DD+  + YSSGTTG PKG++ 
Sbjct: 144 GVTVVTIDDPPEGCLHFSELTQADEN----ELPEVEISPDDVVALPYSSGTTGLPKGVML 199

Query: 182 PHRGAV 187
            H+G V
Sbjct: 200 THKGLV 205

Length = 537

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 25/185 (13%)

Query: 18  MFRNQAKRTPDKIAV------VDHDGR--SITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
           + R +A   PD  A        D  G   ++T+ QL   T  V   L   G   G    +
Sbjct: 6   LLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVI 64

Query: 70  LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLE---SVLDDAKPSIVITK-------G 119
           L  + LE+ ++++   +AG   +PL      A  E   +VL D  PS+V+T         
Sbjct: 65  LAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVT 124

Query: 120 EYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
           EY+      S P V +E D L  + S        D     L   AY+ Y+SG+T  P G+
Sbjct: 125 EYVAPQPGQSAPPV-IEVDLLD-LDSPRG----SDARPRDLPSTAYLQYTSGSTRTPAGV 178

Query: 180 VCPHR 184
           +  HR
Sbjct: 179 MVSHR 183

Length = 578

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 11  AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
           +E  L  M   QA+R PD+  +V   G   T+ +           L   G   G  V ++
Sbjct: 19  SERTLPAMLARQAERYPDRPLLVF-GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALM 77

Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
               +E+   ++     G   +P+ T+     LE +L ++   +++ +   +  LE    
Sbjct: 78  CGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP 137

Query: 131 PKVKLENDFLSKMISENE---KLHNVDFPQ---------VGLDDIAYIVYSSGTTGKPKG 178
             + L   +L    +             P          V   D A I+Y+SGTTG  KG
Sbjct: 138 GDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKG 197

Query: 179 IVCPH 183
           + CPH
Sbjct: 198 VCCPH 202

Length = 542

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 48/152 (31%)

Query: 39  SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
           S+TF++LD+    +   L   G   G  V +L +  +E+ + ++A+ + G   LPL    
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 99  PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV 158
           P   L+  L D                                               Q 
Sbjct: 61  PQEELQQQLADL----------------------------------------------QP 74

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
            LD  A I+++SG+TGKPK +V  H    H  
Sbjct: 75  DLDRPATIIFTSGSTGKPKAVV--HTWGNHLA 104

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+R PD+ A++D  G ++T+ +LDE ++ +   L+  G   G  V VL      + ++  
Sbjct: 59  ARRAPDRAALIDERG-TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
           A  K G   + L T +    L  V        ++   E+ D L       +  +   L  
Sbjct: 118 AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLS-----ALPPDLGRLRA 172

Query: 143 MISENEKLHNVDFPQVGLDDIA----------------YIVYSSGTTGKPKGIVCPH 183
                +           LDD+                  ++ +SGTTG PKG   P 
Sbjct: 173 WGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPE 229

Length = 549

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 22/170 (12%)

Query: 41  TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
           T++ LD     +   L  QG   GS V ++ +  +E  +   A    G     L T    
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLH------NVD 154
               + L+D    +++T       LE         E DF +  +   E         +  
Sbjct: 61  NERTNQLEDLDVQLLLTD----SLLE---------EKDFQADSLDRIEAAGRYETSLSAS 107

Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
           F    +D IA ++++SGTTGKPK +    R    +         + EDD 
Sbjct: 108 FN---MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDN 154

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 34/185 (18%)

Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
           G++IT+ +LDE +  +  +L ++G   G+ V ++M   L++ ++  A+ +AG   + +  
Sbjct: 46  GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP 105

Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRLE----RTSVPKVKLEN--DFL---------- 140
            Y P  LE  L D+    ++    +   ++    +T+V  V + +  D L          
Sbjct: 106 LYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFV 165

Query: 141 ----SKMISENEKLHNVDF--------------PQVGLDDIAYIVYSSGTTGKPKGIVCP 182
                KM+       +V F               ++G DD+A++ Y+ GTTG  KG    
Sbjct: 166 VRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLL 225

Query: 183 HRGAV 187
           HR  V
Sbjct: 226 HRNIV 230

Length = 557

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 18  MFRNQAKRTPDK-IAVVDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           +  + A+   D+ I     DG     T+         +   L + G   G  V  L    
Sbjct: 1   ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
                 Y A+   G     L     P  +  +++ A+  ++    +++  LE     +P 
Sbjct: 61  HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPT 120

Query: 133 VKLENDFLSKMISENEKLHNV--------------DFPQVGLDDIAYIVYSSGTTGKPKG 178
           VK               L NV              ++P++  +  A + Y+SGTTG PKG
Sbjct: 121 VK-AVVVYDDADMPETSLPNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKG 179

Query: 179 IVCPHRGAV-HAY 190
           +V  HR  V H  
Sbjct: 180 VVYSHRSLVLHTL 192

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 22/184 (11%)

Query: 28  DKIA---VVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84
           DK+A   +        T+K+L E ++     L   G   G  V + M R  E   + +  
Sbjct: 59  DKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGA 118

Query: 85  HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK---------- 134
            K G    PL  ++    +   L+D++  ++IT    ++R     +P +K          
Sbjct: 119 LKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVE 178

Query: 135 -LEN--DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY- 190
                 DF + M   +++    D      +D A + Y+SG+TGKPKG++  H   +  Y 
Sbjct: 179 EGPGTLDFNALMEQASDEF---DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ 235

Query: 191 --KW 192
             K+
Sbjct: 236 TGKY 239

Length = 570

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYL----INQGCIVGSTVGVL 70
           L   + + AKR   ++AV D  G  +++ +      + G       + +       VG+L
Sbjct: 617 LAEAWIDTAKRNWSRLAVADSTGGELSYGKA-----LTGALALARLLKRELKDEENVGIL 671

Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
           +   +   ++ +A+  AG   + L  +   A L+S ++ A+   VIT  +++++L+    
Sbjct: 672 LPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF 731

Query: 131 -------PKVKLENDFLSKMISENEK--------------LHNVDFPQVGLDDIAYIVYS 169
                   KV    D  +K IS+ +K              L  +  P    DD A I++S
Sbjct: 732 DLELPENVKVIYLEDLKAK-ISKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFS 790

Query: 170 SGTTGKPKGIVCPHR 184
           SG+ G+PKG++  H 
Sbjct: 791 SGSEGEPKGVMLSHH 805

Length = 1146

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD  A+    G + T+++LD+    +   L  +G   G  V +LM    E+  S +A + 
Sbjct: 31  PDAPAL-RFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANM 89

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPKVKL--------E 136
            G   +P+     P  +  ++ D    +V+T+          R  VP +          +
Sbjct: 90  LGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD 149

Query: 137 NDFLS--KMISENEKLHN-VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
           +  L    +++E    H  VD P    D  A I+Y+SGTTG+PKG V  H
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVDIPN---DSPALIMYTSGTTGRPKGAVLTH 196

Length = 542

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 40/196 (20%)

Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95
           G++IT+++ D+  +    YL+ +  +  G  V ++M  CL++ I+   + +AG   + + 
Sbjct: 48  GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107

Query: 96  TSYPPALLESVLDDAKPSIVITKGEYMDRLER----TSV--------------PKVKLEN 137
             Y P  L+  L D+  S+++    +   +++    T V              PK  L N
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167

Query: 138 ---DFLSKMISE---------NEKL-----HNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
               ++ K++ E          E L     H++   Q+  DDIA++ Y+ GTTG  KG +
Sbjct: 168 FVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAM 227

Query: 181 CPHRGAV----HAYKW 192
             HR  V     A++W
Sbjct: 228 LTHRNLVANMQQAHQW 243

Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 13/170 (7%)

Query: 27  PDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERCLEWTISYIAI 84
               A++D   G SI++ +L      +   L +   +  G  V +L+   + + + ++A+
Sbjct: 53  NGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112

Query: 85  HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL-EN-DFLSK 142
              GG    +  S     ++  + D    +  T  E +++L    VP + + EN DF SK
Sbjct: 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSK 172

Query: 143 MISENEKLHNV---DF-----PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
            I E  K + +   DF     P +  DD+A I+YSSGTTG  KG+V  HR
Sbjct: 173 RI-EFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHR 221

Length = 560

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 40/193 (20%)

Query: 24  KRTPDKIAVV----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
               D  A+     D + R I++ +L      +   L + G   G  V   +    E  I
Sbjct: 67  HADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVI 126

Query: 80  SYIAIHKAGGGYLPLETSYPPAL-LESVLDDAK---PSIVIT------KGEYMDRLER-- 127
           + +A    G  +    +S  P   +E+VLD      P ++         G+  DR E+  
Sbjct: 127 AMLATASIGAIW----SSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIA 182

Query: 128 ------TSVPKVKLENDFLSKMISENEKLHNVD--------------FPQVGLDDIAYIV 167
                  S+  V +     S       K   +               F ++  D   +I+
Sbjct: 183 EIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWIL 242

Query: 168 YSSGTTGKPKGIV 180
           YSSGTTG PK IV
Sbjct: 243 YSSGTTGLPKCIV 255

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)

Query: 22  QAKRTPDKIAVVDHDGRS-ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
           QA++ P+ IA+   DG S + +++L      +   L  Q    GS V V+ +   E  +S
Sbjct: 23  QARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLS 82

Query: 81  YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL 140
            +A  K G   +  + + P A +E       P+  +       ++  ++VP+       +
Sbjct: 83  VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPG--SKMASSAVPEALHSIPVI 140

Query: 141 SKMISEN--EKLHNVDF------PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
           +  I+    E  H++D          G +D   ++++SGTTG+PK ++  +R
Sbjct: 141 AVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANR 192

Length = 540

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
           DD A I+Y+SGTTG+PKG++  HR  +               D 
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDV 44

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREAC------NVFFVWEM 215
           D A+I+Y+SGTTGKPKG+V  HR  +   +   +A    E D           V     +
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 216 LRPLTQGIPMYVISDEVIYDPPRLTSGWVRL 246
           L  L  G    V    V+Y+       ++ L
Sbjct: 61  LGALLAG--GTV----VLYEGFPFPLSFLEL 85

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 50/221 (22%), Positives = 79/221 (35%), Gaps = 50/221 (22%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           DY  +  L  ++ N   R  D+ A+ D  G + T+ +L +        L   G   G  V
Sbjct: 28  DYG-DTTLVDLYDNAVARFGDRPAL-DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRV 85

Query: 68  GVLMERCLEWTISYIAIHKAGGGYL---PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124
            +++  C +  +++ A+ + G   +   PL   Y    LE   +D    + I   +    
Sbjct: 86  AIVLPNCPQHIVAFYAVLRLGAVVVEHNPL---YTAHELEHPFEDHGARVAIVWDKVAPT 142

Query: 125 LERTSVPKVKLENDFLSKMISE-------------------NEKLH-------------- 151
           +ER       LE      MI+                       L               
Sbjct: 143 VERL-RRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVD 201

Query: 152 --------NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                   +V  P+   DD+A I+Y+SGTTGKPKG    HR
Sbjct: 202 AAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHR 242

Length = 573

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 20/175 (11%)

Query: 23  AKRTPDKIAVV--DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
           A   PDK+A++  D DG  +  TF  L ++++    +    G   G TV + ++R  E+ 
Sbjct: 27  ADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFW 86

Query: 79  ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE-----YMD--RLERTSVP 131
            S +A+HK G   +P         +   ++ A   +++  GE     ++D    E  S  
Sbjct: 87  FSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPT 146

Query: 132 K-VKLENDFLSKMISENEKLHNV--DFPQ------VGLDDIAYIVYSSGTTGKPK 177
             V + +      I  ++++ N   DF +         DDI  + ++SGTTG PK
Sbjct: 147 LLVLVGDPVPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK 201

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 13/172 (7%)

Query: 20  RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
           R+QA R PD IA++    R  ++++LD+  D +   L   G   G T  V +    E+ I
Sbjct: 30  RDQAARYPDAIAIIC-GNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYI 88

Query: 80  SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM----DRLERTSVPKV-K 134
            + A+ K G   +    S+  + L +     +P++ I    +     D   R    K+  
Sbjct: 89  VFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPT 148

Query: 135 LENDFLSKMISENEKLH-------NVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
           L N  ++    E E           V FP    D++A+   S G+TG PK I
Sbjct: 149 LRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLI 200

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 37/214 (17%)

Query: 9   YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
           YD +  LH      A R P+K A+    G+ ITF    +       YL   G   G  V 
Sbjct: 21  YDIQ-PLHKYVEQMASRYPEKKAL-HFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVA 78

Query: 69  VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV---------ITKG 119
           +++  C +  I Y     AGG  +     Y    LE  L D+   ++         +T  
Sbjct: 79  IMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNV 138

Query: 120 EYMDRLERTSV---------------PKVKLENDFLSKMISENEKLH-----------NV 153
           +   ++E   V               P V+ +   L   +SE+E +H            V
Sbjct: 139 QSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGV 198

Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
           + P    +D+A + Y+ GTTG PKG++  H+  V
Sbjct: 199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLV 232

Length = 563

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 40/192 (20%)

Query: 23  AKRTPDKIAVVDHDGR---------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           A+  PD++AV    GR          ++F +LD  +D +   L   G I      VLM  
Sbjct: 16  AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAG-IGRGMRAVLMVT 74

Query: 74  -CLEWTISYIAIHKAGGGYLPLETSYPPALLE---------SVLDDAKPS--IVITKGEY 121
             LE+     A+ KAG           P L++           L +A+P   I I K   
Sbjct: 75  PSLEFFALTFALFKAGA---------VPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHL 125

Query: 122 MDRL----ERTSVPKVKLENDFLSKM-----ISENEKLHNVDFPQVGLDDIAYIVYSSGT 172
             RL    + +    V +    L        +  +          +  DD+A I+++SG+
Sbjct: 126 ARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGS 185

Query: 173 TGKPKGIVCPHR 184
           TG PKG+V  H 
Sbjct: 186 TGTPKGVVYTHG 197

Length = 552

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 9/51 (17%)

Query: 134 KLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
            L N FL   I++ + L ++       DDIA+I +SSG+TG+PKG++  H+
Sbjct: 88  ILNNPFL---ITDRDSLLSL------PDDIAFIQFSSGSTGEPKGVILTHK 129

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 56/206 (27%), Positives = 78/206 (37%), Gaps = 48/206 (23%)

Query: 26  TPDKIAV-----VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
             D+IA+     V    R+ T+ +L +    +   L   G + G  V + M    E  I+
Sbjct: 55  RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114

Query: 81  YIAIHKAG-------GGYLPLETSYPPALLESVLDDAKPSIVITKG---------EYMDR 124
            +A  + G       GG+   E       L S +DDAKP +++T            Y   
Sbjct: 115 MLACARIGAIHSVVFGGFASKE-------LASRIDDAKPKLIVTASFGIEPGRVVPYKPL 167

Query: 125 LE-----------------RTSVP-KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYI 166
           L+                 R  VP  +K   D          K   VD   V   D  YI
Sbjct: 168 LDKALELSQHKPHKVLILNRGQVPAPLKPGRDLDWA--ELMAKARPVDCVPVESTDPLYI 225

Query: 167 VYSSGTTGKPKGIVCPHRGAVHAYKW 192
           +Y+SGTTGKPKG+V    G   A KW
Sbjct: 226 LYTSGTTGKPKGVVRDTGGYAVALKW 251

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGST 66
           + D   +L  MF     R  D+ A ++  G  +TF++L+E +     YL N  G   G  
Sbjct: 18  NPDRYQSLVDMFEQAVARYADQPAFINM-GEVMTFRKLEERSRAFAAYLQNGLGLKKGDR 76

Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
           V ++M   L++ I+   I +AG   + +   Y P  LE  L+D+    ++    +   LE
Sbjct: 77  VALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLE 136

Query: 127 R----TSVPKVKLEN--DFLS---------------KMISENEKLHNVDF---------- 155
           +    T V  V L    D LS               +++ +      + F          
Sbjct: 137 KVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRM 196

Query: 156 ----PQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
               P++  +D+A++ Y+ GTTG  KG +  HR
Sbjct: 197 QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHR 229

Length = 560

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A   P+KIA+ ++D R +T+K   E    V  +L N+      T+ +L+E  +E+   + 
Sbjct: 11  ASLQPNKIAIKEND-RVLTYKDWFESVCKVANWL-NEKESKNKTIAILLENRIEFLQLFA 68

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
               AG   +PL+  +    L+  L  +   +++T+   ++ L       ++++     +
Sbjct: 69  GAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDE--WKR 126

Query: 143 MISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
           MI +       ++  Q   +   Y+ ++SG+TGKPK  +   +  +H++
Sbjct: 127 MIEKYLPTYAPIENVQ---NAPFYMGFTSGSTGKPKAFLRAQQSWLHSF 172

Length = 487

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 23/167 (13%)

Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
           +T+K++ +    +G+ + ++G   G   G+    C EW I+  A +  G  Y+PL  +  
Sbjct: 78  LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137

Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLE-------NDFLSKMISENEKL-- 150
              +E +++ A+ SI   +   +  +  + +PK            D  S+   E E+L  
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSI-LSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGV 196

Query: 151 -------------HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                         + + P     DI  I+Y+SGTTG+PKG++  +R
Sbjct: 197 SCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNR 243

Length = 660

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 153 VDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
           ++F  V  D   +I+YSSGTTG PK IV
Sbjct: 255 LEFEPVPFDHPLWILYSSGTTGLPKCIV 282

Length = 655

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 29/167 (17%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A R P + A++D DG ++++++L   T+ +   L   G   G  VGV+      +  +  
Sbjct: 45  AARWPGRTAIIDDDG-ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
           A+   G   +P+ T +    L + L     S V+   E+ +R+                 
Sbjct: 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA-------------- 149

Query: 143 MISENEKLHNVDFPQVGLDDIA----------YIVYSSGTTGKPKGI 179
               ++ +  +D    G ++             ++ +SGTTGKPKG+
Sbjct: 150 ----DDAVAVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGKPKGV 192

Length = 516

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNV--FF-----V 212
           DD A I Y+SGTTG+PKG +  HR  ++  Y    R     E DR        F     V
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDR-TLVPVPLFHVFGLV 59

Query: 213 WEMLRPLTQGIPMYVISDEVIYDPPR 238
             +L  LT G  + ++     +DP  
Sbjct: 60  LGVLASLTAGATLVLME---KFDPGA 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 37/203 (18%)

Query: 18  MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
           +    A R PD+ A+V  D G   T+++ +E  D +   L+  G   G  VG+      E
Sbjct: 21  LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80

Query: 77  WTISYIAIHKAGGGYLPLETSYPPALLESVLD--DAKPSIVITKG----EYMD------- 123
           W ++  A  K G   + +  +Y  + LE  L+    K +++   G    +Y+        
Sbjct: 81  WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCK-ALIAADGFKDSDYVAMLYELAP 139

Query: 124 --------RLERTSVPKVK----LENDFLSKMISENEKLH---NVDFPQV-----GL--D 161
                   +L+   +P+++    L ++    M++ +E L     VD  ++      L  D
Sbjct: 140 ELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPD 199

Query: 162 DIAYIVYSSGTTGKPKGIVCPHR 184
           D   I Y+SGTTG PKG    HR
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHR 222

Length = 559

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 35/246 (14%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+  PD +A++D + R ++  +L    D +  +L  QG   G  V V +  C+EW + ++
Sbjct: 20  ARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-----------MDRLERTSVP 131
           A  + G   + + T Y    +  +L   +   ++    +           +       + 
Sbjct: 79  ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLR 138

Query: 132 KVKLENDFLSKMISENEKLHNVDFPQV-------------GLDDIAYIVY-SSGTTGKPK 177
            + +  D  +           V    +                D   +++ +SGTT  PK
Sbjct: 139 AIAVV-DDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPK 197

Query: 178 GIVCPHRGAVHAYKWRHRAYPYDEDDR-----EACNVFFVWEMLRPLTQGIPMYVISDEV 232
            ++      +   +   RAY YD           C VF    +L  L  G P+     E 
Sbjct: 198 LVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVC---EP 254

Query: 233 IYDPPR 238
           ++D  R
Sbjct: 255 VFDAAR 260

Length = 540

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 45/186 (24%)

Query: 89  GGYLPLETSYPPAL---------LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDF 139
           GG++P+  + PP           L ++ +     +++T    +  L         L    
Sbjct: 87  GGFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAALVAALAG-------LRTRA 139

Query: 140 LSKMI--SENEKLHNV----DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR 193
             + +     E+L +            DD A ++ +SG+TG PK +V  HR  +      
Sbjct: 140 GLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGT 199

Query: 194 HRAYPYDEDDREACNVFFVWEM------------LRPLTQGIPM-YVISDEVIYDPPRLT 240
            +   +  DD     V   W M            LR +  G    +V +D ++ DP R  
Sbjct: 200 VQVNGFTPDD-----VSLNW-MPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLR-- 251

Query: 241 SGWVRL 246
             W+ L
Sbjct: 252 --WLDL 255

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 29/183 (15%)

Query: 20  RNQAKRTPDKIAV-----VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           + +A +TPD++A+        +G  ++++ LD     +   L  +    G    +L    
Sbjct: 16  QRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARA-SFGDRAVLLFPSG 74

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPP--------ALLESVLDDAKPSIVITKGEY----- 121
            ++  ++     AG   +P   +YPP          L S++ DA+P +++T  +      
Sbjct: 75  PDYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLL 131

Query: 122 -MDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
            M+ L   + P++ L  D L   ++E         P +  DDIA++ Y+SG+T  PKG+ 
Sbjct: 132 QMEELAAANAPEL-LCVDTLDPALAEAW-----QEPALQPDDIAFLQYTSGSTALPKGVQ 185

Query: 181 CPH 183
             H
Sbjct: 186 VSH 188

Length = 4334

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+R PD+  ++D  G ++T+++LDE +D +   L          VG++      +  + +
Sbjct: 53  AQRCPDRPGLIDELG-TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT---------SVPKV 133
           A ++ G   L L TS+    L  V+       VI   E+   ++R           V   
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWT 171

Query: 134 KLENDFLS-KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK- 191
             ++D     +I+ +         + G      I+ +SGTTG PKG      G +   K 
Sbjct: 172 DEDHDLTVEVLIAAHAGQRPEPTGRKG----RVILLTSGTTGTPKGARRSGPGGIGTLKA 227

Query: 192 ------WRHR 195
                 WR  
Sbjct: 228 ILDRTPWRAE 237

Length = 537

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
            R  TF++L+E+++ V  +   QG   G  V + ME  LE+   ++ + K G     +ET
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIG-----VET 55

Query: 97  SY------PPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKL 150
           +         +LL  +   +K   +I     +D L   S                     
Sbjct: 56  ALINSNLRLESLLHCI-TVSKAKALIF--NLLDPLLTQS-------------------ST 93

Query: 151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH----RGAVHAYK 191
                  V   D  + +Y+SGTTG PK  V  H    R A  AY 
Sbjct: 94  EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYY 138

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 22/179 (12%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           PD+ AV+ H  R  T+ +       + + L  +G   G TV VL+        ++  +  
Sbjct: 32  PDRPAVI-HGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPM 90

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM----DRLERTSVPKVKLENDFLSK 142
           AG     L T    A +  +L   +  ++I   E+     + L     PK  L  D    
Sbjct: 91  AGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDP 149

Query: 143 MISENEKLHNVDF---------------PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
                  +  +D+               P    D IA + Y+SGTTG PKG+V  HRGA
Sbjct: 150 EYPGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGA 207

Length = 545

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 23/184 (12%)

Query: 23  AKRTPDKIAVVDHDG----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-W 77
           A+ TPD++ + +  G    R +T+ +       +   L++ G      + +L    +E  
Sbjct: 5   ARETPDRVFLAERRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHA 64

Query: 78  TISYIAIHKAGGGYLPLETSYP-----PALLESVLDDAKPSIVITKGEYM-----DRLER 127
            ++  A++ AG    P+  +Y       A L  + D   P  V  +           L  
Sbjct: 65  LLALAAMY-AGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGL 123

Query: 128 TSVPKVKLENDFLSKMISENEKLHN-----VD--FPQVGLDDIAYIVYSSGTTGKPKGIV 180
             VP V +        I+    L       VD  F  VG D +A  +++SG+TG PK ++
Sbjct: 124 AGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVI 183

Query: 181 CPHR 184
             HR
Sbjct: 184 NTHR 187

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 14/24 (58%), Positives = 21/24 (87%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR 184
           DD+A I+Y+SG+TG+PKG++  HR
Sbjct: 2   DDLAAIIYTSGSTGEPKGVMLSHR 25

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 109 DAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY 168
           + +P++V+T     DR + + V +        ++++SE  ++    +  +G D +AY  Y
Sbjct: 100 NTEPALVVTSDALRDRFQPSRVAEA-------AELMSEAARVAPGGYEPMGGDALAYATY 152

Query: 169 SSGTTGKPKGIVCPH 183
           +SGTTG PK  +  H
Sbjct: 153 TSGTTGPPKAAIHRH 167

Length = 705

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 25/187 (13%)

Query: 19  FRNQAKRTPDKIAVV----DHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           F       PDK A+      H   R  ++++LD   D +   L   G   G  V   +  
Sbjct: 28  FDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPN 87

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLE 126
             E+T  Y+A  + G    PL   +    L  +L+ A   + +    +       M R  
Sbjct: 88  RWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMAREL 147

Query: 127 RTSVPKVKL-------ENDFLSKMISENEKLHNVDF------PQVGLDDIAYIVYSSGTT 173
           ++ +P ++         +D   +++   E+    D       P+   DD+  ++Y+SGTT
Sbjct: 148 QSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTT 207

Query: 174 GKPKGIV 180
           G+PKG++
Sbjct: 208 GEPKGVM 214

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 14/180 (7%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L +  R  A+R PD+IA+V    RS T++++D   D +   L  +G   G  + V    C
Sbjct: 9   LAHFLRQAARRFPDRIALV-WGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNC 67

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
            +   S  A  + G  ++P      P  +  + + +    +I   ++ +     R + P 
Sbjct: 68  NQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPD 127

Query: 133 VKL---------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
           +             D+   +++ +     V    V  DD  +  ++SGTTG+PK  V  H
Sbjct: 128 LTHVVAIGGARAGLDY-EALVARHLG-ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 46/205 (22%), Positives = 67/205 (32%), Gaps = 45/205 (21%)

Query: 19  FRNQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           F     R PD+ A+V  H     T++QL +  D +   L+  G   G  VG+    C EW
Sbjct: 24  FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
            ++  A  + G   + +  +Y  + LE  L  +    VI      D   +TS     L+ 
Sbjct: 84  LLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVIC----ADAF-KTSDYHAMLQE 138

Query: 138 DFLSKMISENEKLHNVDFP---------------------------------------QV 158
                   +   L     P                                        +
Sbjct: 139 LLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASL 198

Query: 159 GLDDIAYIVYSSGTTGKPKGIVCPH 183
             DD   I Y+SGTTG PKG    H
Sbjct: 199 DRDDPINIQYTSGTTGFPKGATLSH 223

Length = 558

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 13/144 (9%)

Query: 38  RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
            S++++QL +  D++   L   G      + + ++  ++W I+ +A  +AG   +P+   
Sbjct: 1   DSLSYQQLWQEVDLLAEQLRALGV---KRIALALDNSIDWVIADLACLQAGIVCIPIPHF 57

Query: 98  YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
           +     + +L+DA   ++I+     D  +  S              I+     + V+ P 
Sbjct: 58  FSAQQTQHLLNDAGADLLIS-----DDPDAASALHTPFATLGEDLYIALRPSANPVELPA 112

Query: 158 VGLDDIAYIVYSSGTTGKPKGIVC 181
                 A I Y+SG+TG+PKG VC
Sbjct: 113 ----GTAKITYTSGSTGQPKG-VC 131

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 44/148 (29%)

Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
            R +++ + + W +     L   G   G  V +LME   E+ ++++A+ K G     + T
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFP 156
           +    +L   ++ +    VI                                        
Sbjct: 61  TQRGEVLAHCINVSDARAVIV--------------------------------------- 81

Query: 157 QVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                D A+ +Y+SGTTG PK  +  HR
Sbjct: 82  -----DPAFYIYTSGTTGLPKAAIMSHR 104

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 30/200 (15%)

Query: 18  MFRNQAKRTPD-----KIAVVDHDGRSITFKQLDEWTDIV---GTYLINQGCIVGSTVGV 69
           +FR   ++ P+     +  +VD       ++   E  DIV   G  L + G    +  G+
Sbjct: 50  VFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGI 109

Query: 70  LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
                 EW IS  A +  G   +PL  +     +E ++  ++ SIV  + + +  L +T 
Sbjct: 110 YGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTC 169

Query: 130 VPKVKLENDFLS------KMISENEKLHNV----------------DFPQVGLDDIAYIV 167
               +     +S      +   E E    V                D P     DI  I+
Sbjct: 170 PNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIM 229

Query: 168 YSSGTTGKPKGIVCPHRGAV 187
           Y+SGTTG PKG++  +   V
Sbjct: 230 YTSGTTGDPKGVMISNESIV 249

Length = 666

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 24/166 (14%)

Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI-AIHKAGGGYLPLETSY 98
           +T+KQ  E         +  G     +VG+L     EW I+ + AI  AGG  + + T+ 
Sbjct: 9   LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIF-AGGIAVGIYTTN 67

Query: 99  PPALLESVLDDAKPSI-VITKGEYMDRLE--RTSVPKVK----LENDFLSKMI-----SE 146
            P   + V + ++ +I V+   + + ++   +  +P +K           K        E
Sbjct: 68  SPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKE 127

Query: 147 NEKLHNVDFPQVGLDDI---------AYIVYSSGTTGKPKGIVCPH 183
             +L     P   LD I           ++Y+SGTTG PKG++  H
Sbjct: 128 FMEL-GRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSH 172

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 19/204 (9%)

Query: 20  RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
            + A R PD+IAV+D   R +++ +LD+  D +   L   G   G TV V +    E+ I
Sbjct: 35  TDHAARYPDRIAVID-GERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYI 93

Query: 80  SYIAIHKAGG-------GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL---ERTS 129
           ++ A+ + G         +   E     + +E+ L                R    +  +
Sbjct: 94  TFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPT 153

Query: 130 VPKVKLENDFLSKMISENEKLHNVD----FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
           +  V +  +     + E    H        P     ++A+   S GTTG PK I  P   
Sbjct: 154 LRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLI--PRTH 211

Query: 186 AVHAYKWRHRAY--PYDEDDREAC 207
             + Y  R  A    +D+     C
Sbjct: 212 NDYYYSVRASAEICGFDQQTVYLC 235

Length = 542

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 28/139 (20%)

Query: 64  GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVIT 117
           G  V +L  + L++ I++     AG   +PL   + PA       L +VLDD  PS ++T
Sbjct: 79  GDRVAILAPQNLDYLIAFFGALYAGRIAVPL---FDPAEPGHVGRLHAVLDDCTPSAILT 135

Query: 118 KGEYMDRL----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV 167
             +  + +          ER  V  V    D +               P+   D IAY+ 
Sbjct: 136 TTDSAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVP---------PEANEDTIAYLQ 186

Query: 168 YSSGTTGKPKGIVCPHRGA 186
           Y+SG+T  P G+   H   
Sbjct: 187 YTSGSTRIPAGVQITHLNL 205

Length = 631

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 40/175 (22%)

Query: 35  HDGR-----SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89
           +D R     ++ ++ L    +     L+  G   G  V ++ E   ++  ++ A   AG 
Sbjct: 40  YDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99

Query: 90  GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER---TSVPKVKLENDFLSKMISE 146
             +PL                 P     +  Y+ +L     ++ P   +  D L   ++E
Sbjct: 100 VPVPL---------------PLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNE 144

Query: 147 ------------NEKLH-----NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                       +         +V  P+   DDIAY+ YSSG+T  P+G++  HR
Sbjct: 145 ATHGNPLLHVLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199

Length = 579

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 25/198 (12%)

Query: 2   DSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQG 60
           D + L D+  + A  Y          DK+A V+   G+++T+ ++   T      L + G
Sbjct: 26  DKLTLPDFVLQDAELYA---------DKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLG 76

Query: 61  CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL----DDAKPSIVI 116
              G  V V++    E+ I  + I  AGG +    +   P  LES +    + A   +++
Sbjct: 77  LRKGQVVVVVLPNVAEYGIVALGIMAAGGVF----SGANPTALESEIKKQAEAAGAKLIV 132

Query: 117 TKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVD-------FPQVGLDDIAYIVYS 169
           T      +++   +P + L  + +   ++  E L   D         ++   D+  + +S
Sbjct: 133 TNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFS 192

Query: 170 SGTTGKPKGIVCPHRGAV 187
           SGTTG  KG++  HR  V
Sbjct: 193 SGTTGISKGVMLTHRNLV 210

Length = 546

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 23  AKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
               PDK AV          R  T+++L    D V   L   G   G  V   +    E+
Sbjct: 34  VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF 93

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLERTSV 130
           T+ Y+A  + G    PL   +    L  +L  A+  +++    +       M R  R  +
Sbjct: 94  TVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPEL 153

Query: 131 PKVKL--------ENDFLSKMISENEKLHNVDFPQV------GLDDIAYIVYSSGTTGKP 176
           P ++          + F   ++         D P +      G DD+  ++Y+SGTTG+P
Sbjct: 154 PALRHVVVVGGDGADSF-EALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEP 212

Query: 177 KGI 179
           KG+
Sbjct: 213 KGV 215

Length = 547

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%)

Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A+  P  IA+  +D   +T++QL    D +      QG + GS V +  +   E  ++Y+
Sbjct: 13  AQVRPQAIALRLNDEV-LTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL 71

Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
           A+ + G   LPL     P L + +L++  PS+ +     ++     S           S 
Sbjct: 72  ALLQCGARVLPLN----PQLPQPLLEELLPSLTLDFALVLEGENTFSA--------LTSL 119

Query: 143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
            +   E  H V +       +A +  +SG+TG PK  V
Sbjct: 120 HLQLVEGAHAVAW---QPQRLATMTLTSGSTGLPKAAV 154

Length = 458

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 30  IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89
             ++   G  +T+ +L+  ++ +   L   G   G  V +L+E   E+   Y A  ++G 
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGL 61

Query: 90  GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKVKLENDFLSKM 143
            Y P+      A +  ++DD+   ++I      D     +      VP + +    +   
Sbjct: 62  YYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGF 121

Query: 144 ISENEKLHNVDFPQVGLDDI---AYIVYSSGTTGKPKGI 179
            S  E L     P   + D    A ++YSSGTTG+PKGI
Sbjct: 122 RSYEEAL--AAQPDTPIADETAGADMLYSSGTTGRPKGI 158

Length = 502

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 34  DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
           D  G S+T+++L   +  +   +       G  +G+++   +   ++ +A+  AG   +P
Sbjct: 2   DSTGGSLTYRKLLTASLALSRLIKKLT-KEGENIGIMLPSSVAGALANLALLLAG--KVP 58

Query: 94  LETSYPPAL--LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLS-----KMISE 146
           +  ++      L S    A    VIT   ++++L+   +  +      +        IS+
Sbjct: 59  VMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISK 118

Query: 147 NEK------------LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
            +K            L  +       DD A I+++SG+ G PKG+V  HR
Sbjct: 119 ADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHR 168

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRG-AVHAY---KWRHRAYPYDEDDREAC 207
           +D  +I+Y+SG+TGKPKG+V    G  V+A    K+    +    DD   C
Sbjct: 225 EDPLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKY---VFDIHPDDVYWC 272

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAV---VDHDG-----RSITFKQLDEWTDIVGTYLINQ 59
           D+   G LH  F    +   D   +   +  DG     + +T+ +       +G+ L+  
Sbjct: 39  DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQH 98

Query: 60  GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119
           G   G+ VG+      EW I   A        +PL  +  P  ++ +++ A+ + +    
Sbjct: 99  GIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVP 158

Query: 120 EYMDRLER--TSVPKVKL--------------------ENDFLSKMISENEKLHNVDFPQ 157
           + ++ L    + +P V+L                    E    SK++++  +     F  
Sbjct: 159 QTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQG-RSSPQPFRP 217

Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR 184
              +D+A I Y+SGTTG PKG+V  H 
Sbjct: 218 PKPEDVATICYTSGTTGTPKGVVLTHG 244

Length = 651

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 21/171 (12%)

Query: 25  RTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84
              D IAV+  + R  ++++L++ +D +   L  QG   G T  V +    E+ I++ A+
Sbjct: 35  AASDAIAVICGE-RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFAL 93

Query: 85  HKAGGGYLPLETSYPPALLE--SVLDDAKPSIVI--------TKGEYMDRL--ERTSVPK 132
            K G    P+   +     E  +     +P+++I        +  ++++ L  E +S+  
Sbjct: 94  LKLG--VAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRV 151

Query: 133 VKLENDF----LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
           V L ND     L   I+   +  +        D++A+   S G+TG PK I
Sbjct: 152 VLLLNDDGEHSLDDAINHPAE--DFTATPSPADEVAFFQLSGGSTGTPKLI 200

Length = 536

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
              VG D IA  +++SG+TG PK ++  HR
Sbjct: 203 HAAVGPDTIAKFLFTSGSTGLPKAVINTHR 232

Length = 614

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA 189
           P+   D  A IVY+SGTTG PKG+V   R A+ A
Sbjct: 123 PEPDPDAPALIVYTSGTTGPPKGVVLS-RRAIAA 155

Length = 471

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 72  ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG---EYMDRLERT 128
           +  LEW    +A+  AGG   PL   +     +S +   +P +++T      + + L+  
Sbjct: 68  DLYLEW---LLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQND 124

Query: 129 SVPKVKLE-----------NDFLSKMISENEKLHNVDFPQVGL----DDIAYIVYSSGTT 173
            +P +  +               S + +E  K   +   ++      DD   I ++SGTT
Sbjct: 125 RLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTT 184

Query: 174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDD 203
           G+PKG+   H   +     +     Y EDD
Sbjct: 185 GRPKGVTISHSALIVQSLAKIAIVGYGEDD 214

Length = 563

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 4   VNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
            NLS   A    H      A+RTPD+ A+V +  + I++ +  +        L  +G   
Sbjct: 2   FNLSASIA---FH------ARRTPDRAALV-YRDQEISYAEFHQRILQAAGMLHARGIGQ 51

Query: 64  GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
           G  V +LM+    +     A    G  +LP+        +  +L DA   +++   E+ D
Sbjct: 52  GDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-D 110

Query: 124 RLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIV 180
            +     PK+ ++    +       +      PQ  V   D+  ++Y+SGTT +PKG++
Sbjct: 111 AIVALETPKIVIDAAAQAD-SRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVM 168

Length = 497

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
           D+P++     A I YS+GTTG PKG+V  HR
Sbjct: 174 DWPELDETTAAAICYSTGTTGAPKGVVYSHR 204

Length = 576

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
           DD A I+++SGTTG+PKG+   H+  + + +   +++     DR
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDR 45

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 32/177 (18%)

Query: 23  AKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
           A R P+  A+V    R +I+++ L    D +   L   G + G  V + M    E+ ++ 
Sbjct: 26  ATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL 85

Query: 82  IAIHKAGGGYLPLETSYPPA--------------LLES--VLDDAKPS-----IVITKGE 120
           +A  +A    +PL+ + P A              L+++    D A+P+     + +  G 
Sbjct: 86  LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGG 145

Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPK 177
             D         V L+        +  E       P+    D A I+++ GTTG PK
Sbjct: 146 --DSGPSGGTLSVHLD--------AATEPTPATSTPEGLRPDDAMIMFTGGTTGLPK 192

Length = 534

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 161 DDIAYIVYSSGTTGKPKGIVCPHR 184
           DD+A I+Y+SGTTG PKG++  H 
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHG 287

Length = 700

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 31/200 (15%)

Query: 11  AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
           A G L  +    A     + A+   D R IT+ +L+   +     L+  G    ++V + 
Sbjct: 19  ARGTLPDLLSKAAADYGPRPALEFRD-RPITYTELEAMAETAAAALLRAGYGKDASVALY 77

Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT------------- 117
           +    +  I++    KAG   + L        L   L D+   ++IT             
Sbjct: 78  LGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKF 137

Query: 118 --KGEYMDRL--------ERTSVPKVKLENDFLSKMISENEKLHN----VDFPQVGLDDI 163
             KG  +DRL         +   P+  +  D   ++++  + +       ++P V  DD+
Sbjct: 138 LEKG-LLDRLIVCEDDNWGKVGTPQAPIPAD--PRIVTYADFVKGAAAPAEWPAVTPDDV 194

Query: 164 AYIVYSSGTTGKPKGIVCPH 183
           A + Y+ GTTG PKG +  H
Sbjct: 195 ALLQYTGGTTGLPKGAMLTH 214

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 20/165 (12%)

Query: 36  DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLE 95
             R  ++ +L+E  +       + G   G  V + ++ C E+   +  + K G   +P+ 
Sbjct: 34  VVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93

Query: 96  TSYPPALLESVLDDAKPSIVITKGEYM---DRLERTSVPKVKLENDFLSKMISENEKLHN 152
                     +L +++ S+++T  ++     ++++       L +  L+++    +    
Sbjct: 94  ARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED--ATPLRHICLTRVALPADD-GV 150

Query: 153 VDF--------------PQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
             F              P +  DD A I+++SGTT +PKG+V  H
Sbjct: 151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITH 195

Length = 517

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLP--LETSYPPALLESVLDDAKPSIVITKGEYMDR 124
           VGVL++   E+  S +    A  G +P  L  +   A L   +  A   +V+T+  + + 
Sbjct: 57  VGVLLDNTPEF--SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAEL 114

Query: 125 LE--RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
           L+     V  + +++   +  ++ +       F     DD+  ++++SGT+G PK + C 
Sbjct: 115 LDGLDPGVRVINVDSPAWADELAAHRD-AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCT 173

Query: 183 HR 184
           HR
Sbjct: 174 HR 175

Length = 529

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV-HAY 190
           + D+P+   +  + + Y+SGTTG PKG +  HR  V HAY
Sbjct: 167 DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAY 206

Length = 539

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 33/194 (17%)

Query: 19  FRNQAKRTPDKIAVVDHDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
               A   PD+  +   +      R +T+ +     D +   L++ G   G  V +L   
Sbjct: 55  LAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGN 114

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPP-----ALLESVLDDAKPSIVITK-GEYMDR--- 124
            +E  +  +A  +AG    P+  +Y       A L+ + D  KP +V  + G    R   
Sbjct: 115 SIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALA 174

Query: 125 -LERTSVPKVKLEN-----------DFLSKMISENEKLHNVD--FPQVGLDDIAYIVYSS 170
            L+   V  V +             D  +   +       V      +  D +A  +++S
Sbjct: 175 ALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAA-----VAAAIAAITPDTVAKYLFTS 229

Query: 171 GTTGKPKGIVCPHR 184
           G+TG PK ++   R
Sbjct: 230 GSTGMPKAVINTQR 243

Length = 624

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLH-----NVDFPQVGLDDIAYIVYSSGTTGK 175
           YMD     S   +   +++     SE EKL      + D P    +DIA I+Y+SG+TG 
Sbjct: 207 YMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSP--NDIAVIMYTSGSTGL 264

Query: 176 PKGIVCPHRGAV 187
           PKG++  H   V
Sbjct: 265 PKGVMMTHGNIV 276

Length = 696

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 45/171 (26%)

Query: 38  RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
            S+TF++LDE +D +   L   G   G  V +++    + T    A+ K G   + ++  
Sbjct: 1   DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60

Query: 98  YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ 157
                L   L++A+P   I             +PK                         
Sbjct: 61  MGRKHLGRCLEEAEPDAFI------------GIPKA------------------------ 84

Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHR---GAVHAYKWRHRAYPYDEDDRE 205
              DD A I+++SG+TG PKG+V  HR     + A +     Y   E DR+
Sbjct: 85  ---DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALR---SLYGIREGDRD 129

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG1177|consensus	596		100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1179|consensus	649		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
KOG1176|consensus	537		100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.98
PRK13383	516	acyl-CoA synthetase; Provisional	99.98
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.98
PRK09192	579	acyl-CoA synthetase; Validated	99.98
PRK05850	578	acyl-CoA synthetase; Validated	99.98
PLN02479	567	acetate-CoA ligase	99.98
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.98
PRK07470	528	acyl-CoA synthetase; Validated	99.97
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.97
KOG1256|consensus	691		99.97
PRK08162	545	acyl-CoA synthetase; Validated	99.97
PRK09088	488	acyl-CoA synthetase; Validated	99.97
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.97
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.97
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.97
PRK07868	994	acyl-CoA synthetase; Validated	99.97
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.97
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.97
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK13390	501	acyl-CoA synthetase; Provisional	99.97
PRK08308	414	acyl-CoA synthetase; Validated	99.97
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK13391	511	acyl-CoA synthetase; Provisional	99.96
PRK07787	471	acyl-CoA synthetase; Validated	99.96
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.96
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.96
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.95
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.95
KOG1180|consensus	678		99.95
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.94
KOG1175|consensus	626		99.93
PLN03051	499	acyl-activating enzyme; Provisional	99.91
KOG3628|consensus	1363		99.85
KOG1178|consensus	1032		99.49
KOG3628|consensus	1363		99.36
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.32
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.27
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	98.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.65
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.9
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.81
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	93.87
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	93.75
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	91.3
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	89.36
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	88.32
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	87.84
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	87.43
PRK08315	559	AMP-binding domain protein; Validated	85.19
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	84.85
PLN02565	322	cysteine synthase	84.42
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	84.32
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	83.82
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	83.81
PLN03051	499	acyl-activating enzyme; Provisional	83.78
KOG1177|consensus	596		83.65
PRK12583	558	acyl-CoA synthetase; Provisional	83.04
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	81.13
PLN02247	606	indole-3-acetic acid-amido synthetase	80.72
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	80.53
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	80.34
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	80.22

>KOG1177|consensus

Probab=100.00  E-value=5.4e-37  Score=247.26  Aligned_cols=237  Identities=22%  Similarity=0.295  Sum_probs=193.0

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEe-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ...|+.+.++..+++.||+.+.+. .++..+||+||.+.+.++|.+|..+|+++||||++..||+.+|+...+||.++|.
T Consensus        48 ~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~  127 (596)
T KOG1177|consen   48 DSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL  127 (596)
T ss_pred             ccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence            356999999999999999998874 5677799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhh-----hhcc-------CCC-----------eeeecc-------hh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR-----LERT-------SVP-----------KVKLEN-------DF  139 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~-------~~~-----------~~~~~~-------~~  139 (251)
                      +.+++||....+++++.++..+++++|+.+.+...     +.+.       ..+           .+++.+       .|
T Consensus       128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~  207 (596)
T KOG1177|consen  128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAF  207 (596)
T ss_pred             EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCce
Confidence            99999999999999999999999999997765322     1111       111           111111       01


Q ss_pred             -hhhhhhhhhc----ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-
Q psy4550         140 -LSKMISENEK----LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-  213 (251)
Q Consensus       140 -~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  213 (251)
                       .++.......    ..........|++++-|.|||||||.|||+.+||.|+++++.....+.++.+++++++..|+++ 
T Consensus       208 ~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~  287 (596)
T KOG1177|consen  208 LLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHC  287 (596)
T ss_pred             ehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHH
Confidence             0111111110    0112233467799999999999999999999999999999999999999999889988766543 


Q ss_pred             -----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         214 -----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       214 -----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                           +.++++..|+|+|++.+  .|+|.+.++.|+++|+|
T Consensus       288 ~G~~~~~ma~l~~gat~Vfp~~--~f~~k~alqai~~ekcT  326 (596)
T KOG1177|consen  288 FGCVLGVMAALMHGATIVFPAP--SFDPKDALQAISNEKCT  326 (596)
T ss_pred             HHHHHHHHHHHHhCcEEEeeCC--CCChHHHHHHHHhhceE
Confidence                 46899999999999887  59999999999999997

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.3e-36  Score=265.08  Aligned_cols=237  Identities=20%  Similarity=0.230  Sum_probs=183.4

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEec---C---C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDH---D---G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS   80 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~---~---~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~   80 (251)
                      .+.+.++.++|.+.++++|+++|+...   +   +  +.+||+|+.++++++|++|+++|+++||+|+++++|+++|+++
T Consensus        41 ~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~  120 (666)
T PLN02614         41 IEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIIS  120 (666)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            345669999999999999999999731   1   2  2489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC------CCee-eecch---------------
Q psy4550          81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKV-KLEND---------------  138 (251)
Q Consensus        81 ~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~-~~~~~---------------  138 (251)
                      ++||+++|++++|+++..+.+++.+++++++++++|++++..+.+....      ...+ .....               
T Consensus       121 ~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~  200 (666)
T PLN02614        121 MEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI  200 (666)
T ss_pred             HHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence            9999999999999999999999999999999999999876554432111      1111 11110               


Q ss_pred             -hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-----CCCCCChhhhhHHHH
Q psy4550         139 -FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-----PYDEDDREACNVFFV  212 (251)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~  212 (251)
                       .+......... .........++|+++|+|||||||.||||++||+|+...+......+     ++.++|++++.+|++
T Consensus       201 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~  279 (666)
T PLN02614        201 YAWDEFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA  279 (666)
T ss_pred             EEHHHHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHH
Confidence             00000000000 00112234678999999999999999999999999998877655543     567889998877765


Q ss_pred             H--H---HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         213 W--E---MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       213 ~--~---~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      |  +   .+.++..|+++++.+    +++..+++.|+++++|.
T Consensus       280 H~~~~~~~~~~l~~G~~v~~~~----~~~~~~~~~i~~~~~T~  318 (666)
T PLN02614        280 HIFDRVIEECFIQHGAAIGFWR----GDVKLLIEDLGELKPTI  318 (666)
T ss_pred             HHHHHHHHHHHHHhCCEEEEeC----CCHHHHHHHHHHhCCeE
Confidence            3  2   345678999998864    68999999999999984

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-35  Score=257.15  Aligned_cols=239  Identities=28%  Similarity=0.407  Sum_probs=190.4

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCC-eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~-~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      .....++.+++.+.++.+|+++|+++.+.. .+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++
T Consensus         7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~   86 (534)
T COG0318           7 MTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA   86 (534)
T ss_pred             ccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            344568999999999999999999864443 2999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC--C---eeeecch-------hhhhhhhhhhcccCCCC
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV--P---KVKLEND-------FLSKMISENEKLHNVDF  155 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~---~~~~~~~-------~~~~~~~~~~~~~~~~~  155 (251)
                      |++++|+||..+..++.++++.++++.+++++++.+.......  +   .+.....       ........... .....
T Consensus        87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (534)
T COG0318          87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPG-PDADA  165 (534)
T ss_pred             CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCC-ccccc
Confidence            9999999999999999999999999999999874333332211  1   1111110       01111111100 11111


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC--CCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP--YDEDDREACNVFFVW------EMLRPLTQGIPMYV  227 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~  227 (251)
                      ....++++++++|||||||.||||++||+|+..+.......++  ++++|++++++|++|      .++.+++.|+++++
T Consensus       166 ~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~  245 (534)
T COG0318         166 RPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVL  245 (534)
T ss_pred             CCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEe
Confidence            2267899999999999999999999999999999999999888  899999888776654      34566899999999


Q ss_pred             ecCccccCchHHHhhhhccccC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .++ ..|++..++..+.++++|
T Consensus       246 ~~~-~~f~~~~~~~~i~~~~~t  266 (534)
T COG0318         246 LSP-EPFDPEEVLWLIEKYKVT  266 (534)
T ss_pred             CCC-CCcCHHHHHHHHHHhcce
Confidence            882 139999999999999876

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.3e-35  Score=263.56  Aligned_cols=237  Identities=21%  Similarity=0.259  Sum_probs=188.9

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEe---cCC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVD---HDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI   79 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~---~~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~   79 (251)
                      ..+...++.++|.+.++++|+++|+..   .++     +.+||+|+.++++++|++|+++|+++||+|+++++|+++|++
T Consensus        39 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~  118 (651)
T PLN02736         39 DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLI  118 (651)
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence            345567899999999999999999832   222     459999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeeecch----------------
Q psy4550          80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKLEND----------------  138 (251)
Q Consensus        80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~----------------  138 (251)
                      +++||+++|++++|+++..+.+++.++++.++++++|++++..+.+...     ....+.....                
T Consensus       119 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  198 (651)
T PLN02736        119 VDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI  198 (651)
T ss_pred             HHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEE
Confidence            9999999999999999999999999999999999999998765544321     1111111100                


Q ss_pred             -hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH----
Q psy4550         139 -FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW----  213 (251)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----  213 (251)
                       .+......... .........++++++|+|||||||.||||++||+++..++......+++.++|++++++|++|    
T Consensus       199 ~~~~~~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~  277 (651)
T PLN02736        199 VTYSKLLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYER  277 (651)
T ss_pred             EEHHHHHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHH
Confidence             00001000000 001122346789999999999999999999999999999988888889999999988776544    


Q ss_pred             -HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         214 -EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       214 -~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                       .++.++..|+++++.+    .++..+++.|+++++|
T Consensus       278 ~~~~~~l~~G~~i~~~~----~~~~~~~~~i~~~~~t  310 (651)
T PLN02736        278 VNQIVMLHYGVAVGFYQ----GDNLKLMDDLAALRPT  310 (651)
T ss_pred             HHHHHHHHcCCEEEEeC----CCHHHHHHHHHHhCCc
Confidence             3577889999998876    4788999999999987

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-35  Score=261.47  Aligned_cols=235  Identities=19%  Similarity=0.280  Sum_probs=183.4

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEec---C---C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDH---D---G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY   81 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~---~---~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~   81 (251)
                      +...++.++|.+.++++|+++|+...   +   +  +.+||+|+.++++++|.+|.++|+++||+|+++++|+++|++++
T Consensus        40 ~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  119 (660)
T PLN02861         40 ADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAM  119 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45568999999999999999999531   1   2  46999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------CCCeeeecchh----------------
Q psy4550          82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------SVPKVKLENDF----------------  139 (251)
Q Consensus        82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~----------------  139 (251)
                      +||+++|++++|+++..+.+++.+++++++++++|++++..+.+...      ....++.....                
T Consensus       120 lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  199 (660)
T PLN02861        120 EACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCF  199 (660)
T ss_pred             HHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEE
Confidence            99999999999999999999999999999999999987765443221      11111111100                


Q ss_pred             -hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-----CCCCChhhhhHHHHH
Q psy4550         140 -LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-----YDEDDREACNVFFVW  213 (251)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  213 (251)
                       +.........  ........++++++|+|||||||.||||++||++++..+......++     +.++|++++.+|+.|
T Consensus       200 ~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H  277 (660)
T PLN02861        200 SWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH  277 (660)
T ss_pred             EHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHH
Confidence             0000000000  11223346789999999999999999999999999988777665543     467888888776643


Q ss_pred             --H---HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         214 --E---MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       214 --~---~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                        +   .+.+++.|+++++.+    +++..+++.|+++++|.
T Consensus       278 ~~~~~~~~~~l~~G~~v~~~~----~~~~~~~~~i~~~~~T~  315 (660)
T PLN02861        278 VYDQVIETYCISKGASIGFWQ----GDIRYLMEDVQALKPTI  315 (660)
T ss_pred             HHHHHHHHHHHHhCCEEEEeC----CCHHHHHHHHHHhCCcE
Confidence              2   345789999998874    68999999999999983

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.9e-35  Score=255.16  Aligned_cols=236  Identities=17%  Similarity=0.173  Sum_probs=187.3

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ..-++.++|.+.++++|+++|+++ +++.+||+||.+++.++|++|.++|+++||+|+++++|+++++++++||+++|++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav   83 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTIS-GNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI   83 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEec-CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence            345899999999999999999984 6778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc---CCCe---ee-ecchh------hhhhhhhhhc-----ccC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT---SVPK---VK-LENDF------LSKMISENEK-----LHN  152 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~---~~-~~~~~------~~~~~~~~~~-----~~~  152 (251)
                      ++|+++.++.+++.++++.+++++++++++........   ..+.   .. .....      ..........     ...
T Consensus        84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (563)
T PLN02860         84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTT  163 (563)
T ss_pred             EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccccc
Confidence            99999999999999999999999999987642221111   1111   11 11000      0000000000     000


Q ss_pred             CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEE
Q psy4550         153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYV  227 (251)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~  227 (251)
                      .......++++++++|||||||.||||+++|+++..+.......+++.++|+++..+|++     ..++.++..|+++++
T Consensus       164 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~  243 (563)
T PLN02860        164 ELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVL  243 (563)
T ss_pred             cccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEe
Confidence            111234568999999999999999999999999998877777788999999988766543     246788999999999


Q ss_pred             ecCccccCchHHHhhhhccccCC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .+.   +++..+++.|+++++|-
T Consensus       244 ~~~---~~~~~~~~~i~~~~vt~  263 (563)
T PLN02860        244 LPK---FDAKAALQAIKQHNVTS  263 (563)
T ss_pred             cCC---CCHHHHHHHHHHhCCee
Confidence            887   99999999999999973

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-34  Score=257.14  Aligned_cols=240  Identities=17%  Similarity=0.187  Sum_probs=183.9

Q ss_pred             CcCchhhhHHHHHHHHHHhCCCceEEEec-CC---CeeeHHHHHHHHHHHHHHHHhc---CCCCC-----------CEEE
Q psy4550           7 SDYDAEGALHYMFRNQAKRTPDKIAVVDH-DG---RSITFKQLDEWTDIVGTYLINQ---GCIVG-----------STVG   68 (251)
Q Consensus         7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~---~~~T~~~l~~~~~~~a~~L~~~---g~~~g-----------~~V~   68 (251)
                      ...+...++.++|.+.++++|+++|+.+. ++   +.+||+|+.+++.++|++|.+.   |+++|           |+|+
T Consensus        55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~  134 (746)
T PTZ00342         55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLG  134 (746)
T ss_pred             ccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEE
Confidence            34455789999999999999999999852 23   5799999999999999999974   99999           9999


Q ss_pred             EEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecchhh--
Q psy4550          69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLENDFL--  140 (251)
Q Consensus        69 l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~~~~--  140 (251)
                      ++++|+++|+++.+||+++|++.+|+++.++.+++.+++++++++++|++.+..+.+....     ...+ .++....  
T Consensus       135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  214 (746)
T PTZ00342        135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSK  214 (746)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccc
Confidence            9999999999999999999999999999999999999999999999999877665543211     1111 1111000  


Q ss_pred             ------------------------------------------------------hhhhhhh-----------h----ccc
Q psy4550         141 ------------------------------------------------------SKMISEN-----------E----KLH  151 (251)
Q Consensus       141 ------------------------------------------------------~~~~~~~-----------~----~~~  151 (251)
                                                                            ..+....           .    ...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  294 (746)
T PTZ00342        215 EININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT  294 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc
Confidence                                                                  0000000           0    000


Q ss_pred             CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC--CCCCCChhhhhHHHHH-----HHHHhhhcCcc
Q psy4550         152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY--PYDEDDREACNVFFVW-----EMLRPLTQGIP  224 (251)
Q Consensus       152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~l~~G~~  224 (251)
                      ........++++++|+|||||||.||||++||+|+.+++.......  .....+++++.+|+.|     ..+.+++.|++
T Consensus       295 ~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~  374 (746)
T PTZ00342        295 NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGT  374 (746)
T ss_pred             CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCE
Confidence            0112345678999999999999999999999999998887654432  1234577877766644     24677899999


Q ss_pred             EEEecCccccCchHHHhhhhccccCC
Q psy4550         225 MYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       225 ~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +++.+.    ++..+++.|+++++|.
T Consensus       375 i~~~~~----~~~~l~~di~~~~pT~  396 (746)
T PTZ00342        375 INIWSK----DINYFSKDIYNSKGNI  396 (746)
T ss_pred             EEEeCC----CHHHHHHHHHHhCCcE
Confidence            998863    7999999999999983

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-34  Score=252.07  Aligned_cols=233  Identities=18%  Similarity=0.250  Sum_probs=187.2

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+++ +++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~-~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v  127 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALID-ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII  127 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEE-CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence            4889999999999999999986 567899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC--C---Ceeeec-ch------hhhhhhhhhhcccCCCCCCCCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--V---PKVKLE-ND------FLSKMISENEKLHNVDFPQVGL  160 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~---~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~  160 (251)
                      |+++..+.+++.++++.++++++|++++..+.+....  .   ..+... ..      ........... ..........
T Consensus       128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  206 (549)
T PRK07788        128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAG-SSTAPLPKPP  206 (549)
T ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcC-CCCCCCCCCC
Confidence            9999999999999999999999999987766553321  1   111100 00      00000000000 0011222345


Q ss_pred             CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccC
Q psy4550         161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYD  235 (251)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~  235 (251)
                      ++.++++|||||||.||||+++|+++...+......+++..+++++...|+++     .++.++..|+++++...   ++
T Consensus       207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~  283 (549)
T PRK07788        207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRR---FD  283 (549)
T ss_pred             CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCC---CC
Confidence            67899999999999999999999999998888888888989998876554432     35678899999999876   89


Q ss_pred             chHHHhhhhccccCC
Q psy4550         236 PPRLTSGWVRLPLNG  250 (251)
Q Consensus       236 ~~~~~~~i~~~~vt~  250 (251)
                      |..+++.++++++|.
T Consensus       284 ~~~~~~~i~~~~vt~  298 (549)
T PRK07788        284 PEATLEDIAKHKATA  298 (549)
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999973

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-34  Score=255.23  Aligned_cols=235  Identities=21%  Similarity=0.290  Sum_probs=190.5

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ...++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~  113 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAV  113 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEe-CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence            446899999999999999999985 6778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----Ceeeecc--------hhhhhhhhhh--hcccCCCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----PKVKLEN--------DFLSKMISEN--EKLHNVDF  155 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~~--~~~~~~~~  155 (251)
                      ++|+++..+.+++.++++.++++++|++++..+.+.....     ..+....        .+.+......  ........
T Consensus       114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (600)
T PRK08279        114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR  193 (600)
T ss_pred             EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCCcc
Confidence            9999999999999999999999999999877665433211     1111110        1111111000  00001122


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEec
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVIS  229 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~  229 (251)
                      ....++++++|+|||||||.||||++||+++..++......+++.++|++++.+|+++      .++.++..|+++++.+
T Consensus       194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  273 (600)
T PRK08279        194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR  273 (600)
T ss_pred             cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence            3345689999999999999999999999999999998888899999999987665433      3456788899998888


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .   +++..+++.++++++|
T Consensus       274 ~---~~~~~~~~~i~~~~~t  290 (600)
T PRK08279        274 K---FSASRFWDDVRRYRAT  290 (600)
T ss_pred             C---CCHHHHHHHHHHhcce
Confidence            6   9999999999999987

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2e-34  Score=246.96  Aligned_cols=239  Identities=22%  Similarity=0.279  Sum_probs=184.6

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEec---CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDH---DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~---~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      +-...++..++.+.++.+|+.+++...   ..+.+||+|+.+++.++|.+|++.|++.||+|+|++.|+++|+++.+||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~   91 (613)
T COG1022          12 VAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAIL   91 (613)
T ss_pred             hhhcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            334568899999999999999898753   34679999999999999999999999779999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-hhhhccCC--Ceeee---cchhhhh--------------hh-
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERTSV--PKVKL---ENDFLSK--------------MI-  144 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~--~~~~~---~~~~~~~--------------~~-  144 (251)
                      .+|++.||+++..+++++.++++++++++||++.+.. +.......  +.+..   ..+....              .. 
T Consensus        92 ~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (613)
T COG1022          92 ALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI  171 (613)
T ss_pred             HcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence            9999999999999999999999999999999987533 33221111  00000   0000000              00 


Q ss_pred             h---hhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-CCCCChhhhhHHHHHH---HH-
Q psy4550         145 S---ENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-YDEDDREACNVFFVWE---ML-  216 (251)
Q Consensus       145 ~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~-  216 (251)
                      .   ..............++|+|.|+|||||||.||||++||+|+++++........ +.++|+.++.+|+.|.   ++ 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~  251 (613)
T COG1022         172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE  251 (613)
T ss_pred             hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence            0   00000011123567899999999999999999999999999999999999997 9999999999888653   22 


Q ss_pred             HhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ..+..++...+...   .++..+++.++++++|.
T Consensus       252 ~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~  282 (613)
T COG1022         252 GGLALYGGVTVLFK---EDPRTLLEDLKEVRPTV  282 (613)
T ss_pred             HHHHhhcceEEEec---CCHHHHHHHHHHhCCeE
Confidence            44444444555554   69999999999999873

>KOG1179|consensus

Probab=100.00  E-value=1.1e-34  Score=238.20  Aligned_cols=237  Identities=19%  Similarity=0.243  Sum_probs=197.1

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ...+++++|.++++++|+++|+++.+ ++.+||+|+.++++++|+.|..+|++.||.|+++++|.++|+.+++|++.+|+
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv  154 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV  154 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence            34589999999999999999999644 37899999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecc--------hhhhhhhhhhhcc-cCC
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLEN--------DFLSKMISENEKL-HNV  153 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~-~~~  153 (251)
                      +...||+....+.+.|.++.++++.+|++++..+.+.+..       .+....+.        +....+....... +..
T Consensus       155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~  234 (649)
T KOG1179|consen  155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVS  234 (649)
T ss_pred             eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcc
Confidence            9999999999999999999999999999999876665441       11111110        1111111111111 112


Q ss_pred             CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550         154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYV  227 (251)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~  227 (251)
                      ......-.++++.+|||||||.||+.+++|......+......++++++|+++..+|++|      ++-.++..|+|+++
T Consensus       235 ~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl  314 (649)
T KOG1179|consen  235 TRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL  314 (649)
T ss_pred             cCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence            233445568899999999999999999999999998888888999999999998887754      57889999999999


Q ss_pred             ecCccccCchHHHhhhhccccCC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      -++   |+...||+...+|+||-
T Consensus       315 rkK---FSAS~FW~DC~k~~~Tv  334 (649)
T KOG1179|consen  315 RKK---FSASNFWDDCRKYNVTV  334 (649)
T ss_pred             ecc---cchhhhHHHHHHhCCee
Confidence            998   99999999999999984

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.5e-34  Score=243.12  Aligned_cols=229  Identities=20%  Similarity=0.303  Sum_probs=175.8

Q ss_pred             HHHHHHH-hCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          18 MFRNQAK-RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        18 ~l~~~~~-~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .+.++.. ..+++.|++..+    .+.+||+||.+.++++|+.|++ .|+ +||||++++|+.++.+++++||.++|++.
T Consensus        14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~   92 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP   92 (528)
T ss_pred             hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            3555544 346889988432    2679999999999999999987 578 99999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---------Ceeeecc--hhhhhhhhhhhcccCCCCCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---------PKVKLEN--DFLSKMISENEKLHNVDFPQVGL  160 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  160 (251)
                      +|+.+.++++++...+++++++++|+.+....+.+....         ..++...  .++........  ..........
T Consensus        93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~--~~~~~~~~~~  170 (528)
T COG0365          93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKAS--EKFEFEPLPA  170 (528)
T ss_pred             eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccC--CCCCccccCC
Confidence            999999999999999999999999998876654432211         1111111  11111111111  1133344788


Q ss_pred             CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH-HhCCCCCCChhhhhH------HHHHHHHHhhhcCccEEEecCccc
Q psy4550         161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH-RAYPYDEDDREACNV------FFVWEMLRPLTQGIPMYVISDEVI  233 (251)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~l~~G~~~v~~~~~~~  233 (251)
                      +|+++|+|||||||+||||+|+|..+........ ..+.+.++|++++..      .+.+.++.+|..|++.++......
T Consensus       171 ~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~  250 (528)
T COG0365         171 DDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF  250 (528)
T ss_pred             CCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCC
Confidence            9999999999999999999999998776655444 477888999998754      234568999999999999875211


Q ss_pred             cCchHHHhhhhccccC
Q psy4550         234 YDPPRLTSGWVRLPLN  249 (251)
Q Consensus       234 ~~~~~~~~~i~~~~vt  249 (251)
                      .+|..+++.|++|+||
T Consensus       251 ~~~~~~~~~ie~~~vt  266 (528)
T COG0365         251 YSPERLWEALEKYKVT  266 (528)
T ss_pred             CCHHHHHHHHHHhCCc
Confidence            2599999999999998

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3e-34  Score=249.75  Aligned_cols=237  Identities=16%  Similarity=0.152  Sum_probs=188.0

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .....++.+.|.+.++++|+++|+.+.+++++||+||.++++++|+.|.+.   +||+|+++++|+++++++++||+++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G   91 (539)
T PRK06334         15 LRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSG   91 (539)
T ss_pred             cCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcC
Confidence            344578999999999999999999875557899999999999999999873   89999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecch-----hhhhhhhhh---hcc---
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLEND-----FLSKMISEN---EKL---  150 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~---~~~---  150 (251)
                      ++++|++|..+.+++.++++.+++++++++++..+.+....       ...+.....     +........   ...   
T Consensus        92 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (539)
T PRK06334         92 KIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWL  171 (539)
T ss_pred             CeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhh
Confidence            99999999999999999999999999999987665543221       111211110     000000000   000   


Q ss_pred             -cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCc
Q psy4550         151 -HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGI  223 (251)
Q Consensus       151 -~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~  223 (251)
                       .........++++++|+|||||||.||||++||+++..+.......+++.++|++++.+|+++      .++.++..|+
T Consensus       172 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~  251 (539)
T PRK06334        172 MRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGV  251 (539)
T ss_pred             hhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCC
Confidence             000123456789999999999999999999999999988888888888999999987665432      3577899999


Q ss_pred             cEEEecCccccCchHHHhhhhccccCC
Q psy4550         224 PMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       224 ~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++++...  .+++..+++.|+++++|.
T Consensus       252 ~vv~~~~--~~~~~~~~~~i~~~~~t~  276 (539)
T PRK06334        252 PVVFAYN--PLYPKKIVEMIDEAKVTF  276 (539)
T ss_pred             eEEEecC--CCCHHHHHHHHHHhCCcE
Confidence            9998764  389999999999999973

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.7e-34  Score=251.13  Aligned_cols=238  Identities=19%  Similarity=0.266  Sum_probs=180.3

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      +...++.++|.+.++++|+++|+++.+    .+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||+
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~  115 (614)
T PRK08180         36 DYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAM  115 (614)
T ss_pred             CcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence            345689999999999999999997531    2679999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCC-----HHHHHHHHhhcCccEEEEccch--hhhhhcc---CCCeeeecch-------hhhhhhhhhh
Q psy4550          86 KAGGGYLPLETSYP-----PALLESVLDDAKPSIVITKGEY--MDRLERT---SVPKVKLEND-------FLSKMISENE  148 (251)
Q Consensus        86 ~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~  148 (251)
                      ++|++++|++|.++     .+++.++++.++++++|+++..  ...+...   ....+.....       .+........
T Consensus       116 ~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  195 (614)
T PRK08180        116 YAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPP  195 (614)
T ss_pred             HcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhcccc
Confidence            99999999999988     7999999999999999998642  2222111   1111211110       0111111000


Q ss_pred             c-ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC--CCChhhhhHHHHH------HHHHhh
Q psy4550         149 K-LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD--EDDREACNVFFVW------EMLRPL  219 (251)
Q Consensus       149 ~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~l  219 (251)
                      . ..........++++++|+|||||||.||||++||+++..++......+++.  .++++++++|++|      .++.++
T Consensus       196 ~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l  275 (614)
T PRK08180        196 TAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL  275 (614)
T ss_pred             ccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence            0 000111234578999999999999999999999999999888877777764  4577777665533      356789


Q ss_pred             hcCccEEEecCccccCc---hHHHhhhhccccC
Q psy4550         220 TQGIPMYVISDEVIYDP---PRLTSGWVRLPLN  249 (251)
Q Consensus       220 ~~G~~~v~~~~~~~~~~---~~~~~~i~~~~vt  249 (251)
                      ..|+++++.+.  .+++   ..+++.++++++|
T Consensus       276 ~~G~~v~~~~~--~~~~~~~~~~l~~i~~~~~t  306 (614)
T PRK08180        276 YNGGTLYIDDG--KPTPGGFDETLRNLREISPT  306 (614)
T ss_pred             hcCCEEEEeCC--CccchhHHHHHHHHHHhCCc
Confidence            99999999774  2444   4678888999887

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.9e-33  Score=244.86  Aligned_cols=239  Identities=21%  Similarity=0.312  Sum_probs=189.5

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      .++...++.+++.+.++++|+++|+++.+ ++++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~   97 (537)
T PLN02246         18 YIPNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASR   97 (537)
T ss_pred             CCCCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            44556689999999999999999998643 67899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecchhh---hhhhhhhhcccCCCCCCCC
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLENDFL---SKMISENEKLHNVDFPQVG  159 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  159 (251)
                      +|++++|++|..+.+++..+++.++++++++++...+.+....    ...+..+....   ...................
T Consensus        98 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (537)
T PLN02246         98 RGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS  177 (537)
T ss_pred             cCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhcCCCCCCCCCCCC
Confidence            9999999999999999999999999999999987766543321    12222221110   0000000011111223346


Q ss_pred             CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEec
Q psy4550         160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVIS  229 (251)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~  229 (251)
                      ++++++++|||||||.||||+++|+++.........    .+++.++|++++.+++++      .++.++..|+++++.+
T Consensus       178 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  257 (537)
T PLN02246        178 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP  257 (537)
T ss_pred             ccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC
Confidence            789999999999999999999999999887665433    567888999887665432      3567899999999998


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .   +++..+++.|+++++|
T Consensus       258 ~---~~~~~~~~~i~~~~~t  274 (537)
T PLN02246        258 K---FEIGALLELIQRHKVT  274 (537)
T ss_pred             C---CCHHHHHHHHHHhCce
Confidence            7   8999999999999987

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=9.6e-34  Score=246.87  Aligned_cols=235  Identities=20%  Similarity=0.253  Sum_probs=190.6

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ...++.++|.+.++++|+++|+++ +++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~   97 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVF-GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI   97 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEe-CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCE
Confidence            445799999999999999999984 6778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----Cee-eecchhh---h-h--hhhhhhcccCCCCCCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----PKV-KLENDFL---S-K--MISENEKLHNVDFPQV  158 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~-~~~~~~~---~-~--~~~~~~~~~~~~~~~~  158 (251)
                      ++|+++..+.+++.++++.+++++++++++..+.+.....     ..+ ..+....   . .  ................
T Consensus        98 ~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (542)
T PRK06155         98 AVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAV  177 (542)
T ss_pred             EEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCCCCCC
Confidence            9999999999999999999999999999877655443211     111 1111100   0 0  0000000000112234


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVI  233 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~  233 (251)
                      .++++++|+|||||||.||+|+++|+++..........+++.+++++++..++++     .++.++..|+++++.+.   
T Consensus       178 ~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~---  254 (542)
T PRK06155        178 QPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPR---  254 (542)
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCC---
Confidence            5689999999999999999999999999988877788889999999987665543     45889999999999887   


Q ss_pred             cCchHHHhhhhccccC
Q psy4550         234 YDPPRLTSGWVRLPLN  249 (251)
Q Consensus       234 ~~~~~~~~~i~~~~vt  249 (251)
                      +++..+++.|+++++|
T Consensus       255 ~~~~~~~~~l~~~~~t  270 (542)
T PRK06155        255 FSASGFWPAVRRHGAT  270 (542)
T ss_pred             CCHHHHHHHHHHhCCc
Confidence            8999999999999987

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.2e-33  Score=248.46  Aligned_cols=241  Identities=19%  Similarity=0.191  Sum_probs=185.0

Q ss_pred             CcCchhhhHHHHHHHHHHhCCCceEEEec-------CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550           7 SDYDAEGALHYMFRNQAKRTPDKIAVVDH-------DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI   79 (251)
Q Consensus         7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~-------~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~   79 (251)
                      .+.....++.++|.+.++++|+++|+.+.       .++++||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus        19 ~~~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~   98 (632)
T PRK07529         19 AARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHF   98 (632)
T ss_pred             hhhcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence            33345568999999999999999999752       35689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhc----c-CCCee-eecc-----------
Q psy4550          80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLER----T-SVPKV-KLEN-----------  137 (251)
Q Consensus        80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~~~-~~~~-----------  137 (251)
                      +++||+.+| +++|++|.++++++.++++.++++++|+++.+.     ++...    . ....+ ....           
T Consensus        99 ~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (632)
T PRK07529         99 ALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLA  177 (632)
T ss_pred             HHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccc
Confidence            999999999 579999999999999999999999999976532     11111    0 11111 1110           


Q ss_pred             -------------hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCCh
Q psy4550         138 -------------DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR  204 (251)
Q Consensus       138 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~  204 (251)
                                   ++....... ............++++++++|||||||.||+|.+||++++.++......+++.++|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~  256 (632)
T PRK07529        178 VPLIRRKAHARILDFDAELARQ-PGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT  256 (632)
T ss_pred             ccccccccccccCCHHHHHhcC-CCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCE
Confidence                         111111111 000011122346689999999999999999999999999998888888888899999


Q ss_pred             hhhhHHHH------HHHHHhhhcCccEEEecCccccC---chHHHhhhhccccC
Q psy4550         205 EACNVFFV------WEMLRPLTQGIPMYVISDEVIYD---PPRLTSGWVRLPLN  249 (251)
Q Consensus       205 ~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~---~~~~~~~i~~~~vt  249 (251)
                      +++.+|++      ..++.++..|+++++.++....+   ...+++.++++++|
T Consensus       257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt  310 (632)
T PRK07529        257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRIN  310 (632)
T ss_pred             EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCe
Confidence            98866543      24678899999999987522223   35788999999987

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-33  Score=240.75  Aligned_cols=227  Identities=16%  Similarity=0.285  Sum_probs=184.9

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ++.+.|.+.++++|+++|+.+ .++++||.||.+++.++|.+|.+.|. +|++|+++++|+++++++++||+++|++++|
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   79 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKE-NDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP   79 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEec-CCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            578899999999999999985 67789999999999999999999984 7999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT  173 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  173 (251)
                      +++..+.+++.++++.++++++++++.....+.......+... .+........   ..........+++++|+||||||
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtT  155 (487)
T PRK07638         80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID-EWKRMIEKYL---PTYAPIENVQNAPFYMGFTSGST  155 (487)
T ss_pred             cCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh-hhhhhhhhcc---ccccccccCCCCcEEEEeCCCCC
Confidence            9999999999999999999999999866555433222222221 1111111110   00111223346789999999999


Q ss_pred             CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550         174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL  248 (251)
Q Consensus       174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v  248 (251)
                      |.||||+++|++++.++......+++.++|+++...+     +..+++.++..|+++++.+.   ++|..+++.|+++++
T Consensus       156 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~---~~~~~~~~~i~~~~~  232 (487)
T PRK07638        156 GKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRK---FIPNQVLDKLETENI  232 (487)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCC---CCHHHHHHHHHHcCC
Confidence            9999999999999999888888889999998865332     23467889999999999887   999999999999998


Q ss_pred             C
Q psy4550         249 N  249 (251)
Q Consensus       249 t  249 (251)
                      |
T Consensus       233 t  233 (487)
T PRK07638        233 S  233 (487)
T ss_pred             e
Confidence            7

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.7e-33  Score=250.32  Aligned_cols=233  Identities=21%  Similarity=0.270  Sum_probs=176.8

Q ss_pred             HHHHHHHHHH-hCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          15 LHYMFRNQAK-RTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        15 l~~~l~~~~~-~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ..+++.++++ .+|+++|+++..     ++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus        90 ~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~G  169 (666)
T PLN02654         90 CYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG  169 (666)
T ss_pred             HHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            3567777765 489999997521     3689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhc-------------c-----CCCeeee-cchh----------
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-------------T-----SVPKVKL-ENDF----------  139 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-------------~-----~~~~~~~-~~~~----------  139 (251)
                      ++++|+++.++.+++.+++++++++++|+++......+.             .     ....+.. ....          
T Consensus       170 av~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (666)
T PLN02654        170 AVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQ  249 (666)
T ss_pred             CEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccc
Confidence            999999999999999999999999999998764322110             0     0000000 0000          


Q ss_pred             ------hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH-
Q psy4550         140 ------LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF-  211 (251)
Q Consensus       140 ------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-  211 (251)
                            +....  .............++++++|+|||||||.||||+++|.+++. ........++++++|++++..++ 
T Consensus       250 ~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  327 (666)
T PLN02654        250 EGRDVWWQDVV--PNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCG  327 (666)
T ss_pred             cCCcccHHHHh--hcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCch
Confidence                  00000  000000111224678999999999999999999999999764 44556667889999998775432 


Q ss_pred             -----HHHHHHhhhcCccEEEecCc-cccCchHHHhhhhccccC
Q psy4550         212 -----VWEMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 -----~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt  249 (251)
                           .+.++.+|+.|+++++.+.. ..+++..+++.|++++||
T Consensus       328 ~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt  371 (666)
T PLN02654        328 WITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVT  371 (666)
T ss_pred             hhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence                 34567899999999998742 235899999999999998

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.8e-33  Score=247.76  Aligned_cols=236  Identities=19%  Similarity=0.215  Sum_probs=179.2

Q ss_pred             hHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ...++|.++++.+|+++|+++.     +++.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus        53 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~G  132 (628)
T TIGR02316        53 LCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIG  132 (628)
T ss_pred             HHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence            4467888888889999999852     23679999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hcc---CCCeeeecchh------------h
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERT---SVPKVKLENDF------------L  140 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~---~~~~~~~~~~~------------~  140 (251)
                      ++++|+++.++.+++.+++++++++++|+++....         .+    ...   ....+......            +
T Consensus       133 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  212 (628)
T TIGR02316       133 AIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDY  212 (628)
T ss_pred             CEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccH
Confidence            99999999999999999999999999999764311         11    100   11112221100            0


Q ss_pred             hhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH------HH
Q psy4550         141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF------VW  213 (251)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~  213 (251)
                      ........ ..........++++++|+|||||||.||||+++|.++.. ........++++++|++++..++      .+
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~  291 (628)
T TIGR02316       213 AALRTQHE-DAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSY  291 (628)
T ss_pred             HHHhhccc-cCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhH
Confidence            00000000 001111224678999999999999999999999999764 34455667788999988765432      35


Q ss_pred             HHHHhhhcCccEEEecCc-cccCchHHHhhhhccccCC
Q psy4550         214 EMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       214 ~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt~  250 (251)
                      .++.++..|+++++.+.. ..+++..+++.|++++||.
T Consensus       292 ~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~  329 (628)
T TIGR02316       292 IVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRT  329 (628)
T ss_pred             HHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeE
Confidence            578899999999998741 2468999999999999983

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.9e-33  Score=239.91  Aligned_cols=227  Identities=24%  Similarity=0.289  Sum_probs=188.9

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      |.++.++|.+.+.++|+++|+.+ .++.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++|++++|+++
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEF-EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA   79 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEe-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence            45899999999999999999985 56789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG  171 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  171 (251)
                      +|+++..+.+++.++++.++++.+++++...+......  ...    +. ...... ...........++++++++||||
T Consensus        80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~----~~-~~~~~~-~~~~~~~~~~~~~~~a~i~~TSG  151 (483)
T PRK03640         80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--SVK----FA-ELMNGP-KEEAEIQEEFDLDEVATIMYTSG  151 (483)
T ss_pred             EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--ccc----HH-HHhhcc-cccCCCCCCCCCCCeEEEEeCCC
Confidence            99999999999999999999999999877655432211  000    11 111110 11112223456789999999999


Q ss_pred             CCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHHhhhhcc
Q psy4550         172 TTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRL  246 (251)
Q Consensus       172 tTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~  246 (251)
                      |||.||+|.+||.++...+......++++++|+++..+|+++     .++.++..|+++++.+.   +++..+++.++++
T Consensus       152 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~  228 (483)
T PRK03640        152 TTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEK---FDAEKINKLLQTG  228 (483)
T ss_pred             cCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCC---CCHHHHHHHHHHh
Confidence            999999999999999988877777889999999988765533     35778899999999987   8999999999999


Q ss_pred             ccCC
Q psy4550         247 PLNG  250 (251)
Q Consensus       247 ~vt~  250 (251)
                      ++|.
T Consensus       229 ~~t~  232 (483)
T PRK03640        229 GVTI  232 (483)
T ss_pred             CCcE
Confidence            9974

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-33  Score=244.34  Aligned_cols=229  Identities=18%  Similarity=0.204  Sum_probs=184.6

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .++.++|.+.+  .|+++|+++ .+..+||.||.+++.++|..|.+.|+ ++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~-~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~   79 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRY-GDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL   79 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence            47888887764  699999985 67789999999999999999999999 799999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY  168 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  168 (251)
                      +|++|..+.+++.++++.+++++++++++..+.+....   ...+...............  ...+.....++++++++|
T Consensus        80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~  157 (540)
T PRK13388         80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAG--ALTPHREVDAMDPFMLIF  157 (540)
T ss_pred             EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhcccc--CcCCCCCCCCCCeEEEEE
Confidence            99999999999999999999999999987765554321   1222222111111111000  011122356789999999


Q ss_pred             ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      ||||||.||||.++|+++...+......+++.++|+++..+++++      .++.++..|+++++.+.   +++..+++.
T Consensus       158 TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~  234 (540)
T PRK13388        158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAK---FSASGFLDD  234 (540)
T ss_pred             CCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCC---CCHHHHHHH
Confidence            999999999999999999998888888899999999877655432      23457899999998876   899999999


Q ss_pred             hhccccC
Q psy4550         243 WVRLPLN  249 (251)
Q Consensus       243 i~~~~vt  249 (251)
                      |+++++|
T Consensus       235 i~~~~vt  241 (540)
T PRK13388        235 VRRYGAT  241 (540)
T ss_pred             HHHhCCe
Confidence            9999987

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.2e-33  Score=250.43  Aligned_cols=239  Identities=21%  Similarity=0.220  Sum_probs=178.8

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEe-----------cCCC-----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVD-----------HDGR-----------SITFKQLDEWTDIVGTYLINQGCIVGSTV   67 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~-----------~~~~-----------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V   67 (251)
                      +...++.++|.+.++++|+++|+..           .+++           .+||+|+.+++.++|.+|.++|+++||+|
T Consensus        55 ~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~V  134 (696)
T PLN02387         55 EGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERV  134 (696)
T ss_pred             CCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            4557999999999999999999931           1222           38999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecchh--
Q psy4550          68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLENDF--  139 (251)
Q Consensus        68 ~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~~~--  139 (251)
                      +++++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++++..+.+....     ...+ ..+...  
T Consensus       135 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (696)
T PLN02387        135 AIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVD  214 (696)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCch
Confidence            99999999999999999999999999999999999999999999999999987665543321     1111 111100  


Q ss_pred             ---------------hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-CCCCCC
Q psy4550         140 ---------------LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-PYDEDD  203 (251)
Q Consensus       140 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~  203 (251)
                                     +..+...... .........++|+++|+|||||||.||||++||+|+.+++......+ ++.++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d  293 (696)
T PLN02387        215 SDSSLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKND  293 (696)
T ss_pred             hhhhhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCC
Confidence                           0001111111 01122234679999999999999999999999999999888766554 578899


Q ss_pred             hhhhhHHHHHH-----HHHhhhcCccEEEecCccccC-----chHHHhhhhccccC
Q psy4550         204 REACNVFFVWE-----MLRPLTQGIPMYVISDEVIYD-----PPRLTSGWVRLPLN  249 (251)
Q Consensus       204 ~~~~~~~~~~~-----~~~~l~~G~~~v~~~~~~~~~-----~~~~~~~i~~~~vt  249 (251)
                      ++++.+|+.|.     .+.++..|+++.+.......+     +..+++.++++++|
T Consensus       294 ~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT  349 (696)
T PLN02387        294 VYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPT  349 (696)
T ss_pred             EEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCc
Confidence            99887776542     234466777776654311111     24456678888877

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1e-33  Score=286.40  Aligned_cols=233  Identities=27%  Similarity=0.425  Sum_probs=196.4

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +...++.++|.++++++|+++|+++ +++++||+||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|+
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa 3170 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVF-GDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGG 3170 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEee-CCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCc
Confidence            3446899999999999999999985 677899999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY  168 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  168 (251)
                      +++|++|..+.+++.+++++++++++++++...+.+.... ...+..+.....      ............++++++|+|
T Consensus      3171 ~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~ii~ 3244 (3956)
T PRK12467       3171 AYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLN------GYSENNPSTRVMGENLAYVIY 3244 (3956)
T ss_pred             EeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhc------ccCCCCCcccCCCCceEEEEE
Confidence            9999999999999999999999999999987765543221 122222211100      111112233457789999999


Q ss_pred             ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550         169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGW  243 (251)
Q Consensus       169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i  243 (251)
                      ||||||+||||+++|+++.+.+......++++++|+++++.++     .+.++.+|..|+++++++ ...++|..+++.|
T Consensus      3245 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~~~~l~~~i 3323 (3956)
T PRK12467       3245 TSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWDPEELWQAI 3323 (3956)
T ss_pred             ccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC-cccCCHHHHHHHH
Confidence            9999999999999999999999999999999999999887654     346899999999999988 4468999999999


Q ss_pred             hccccCC
Q psy4550         244 VRLPLNG  250 (251)
Q Consensus       244 ~~~~vt~  250 (251)
                      ++++||.
T Consensus      3324 ~~~~vt~ 3330 (3956)
T PRK12467       3324 HAHRISI 3330 (3956)
T ss_pred             HHcCCEE
Confidence            9999973

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-33  Score=243.40  Aligned_cols=235  Identities=23%  Similarity=0.295  Sum_probs=190.0

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ..++.++|.+.++++|+++|+++ .++++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~   87 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVF-YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV   87 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceee-cCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence            34799999999999999999984 677899999999999999999999 9999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhhh-----------------------
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFLS-----------------------  141 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~~-----------------------  141 (251)
                      ++|++|..+.+++.++++.+++++++++++..+.+...    ....+....  ....                       
T Consensus        88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (546)
T PRK08314         88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPG  167 (546)
T ss_pred             EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccccc
Confidence            99999999999999999999999999998776554332    111111100  0000                       


Q ss_pred             ---hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------H
Q psy4550         142 ---KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------V  212 (251)
Q Consensus       142 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~  212 (251)
                         ..................++++++|+|||||||.||+|.++|+++..++......+++..+|++++.+++      .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  247 (546)
T PRK08314        168 GVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMV  247 (546)
T ss_pred             ccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHH
Confidence               0000000000112234567899999999999999999999999999999888888889999998876543      2


Q ss_pred             HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         213 WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       213 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.++.++..|+++++.+.   +++..+++.++++++|.
T Consensus       248 ~~~~~~l~~G~~i~~~~~---~~~~~~~~~i~~~~~t~  282 (546)
T PRK08314        248 HSMNAPIYAGATVVLMPR---WDREAAARLIERYRVTH  282 (546)
T ss_pred             HHHHHHHHcCCeEEecCC---CCHHHHHHHHHHhcCce
Confidence            356788999999999987   89999999999999974

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-33  Score=243.46  Aligned_cols=230  Identities=20%  Similarity=0.263  Sum_probs=184.9

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+.+ +++.+||+||.++++++|.+|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  121 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLID-ELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL  121 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEe-CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence            4689999999999999999985 567899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----C-CCe-eeecch----hhhhhhhhhhcccCCCCCCCCCCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----S-VPK-VKLEND----FLSKMISENEKLHNVDFPQVGLDD  162 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  162 (251)
                      |+++..+.+++.++++.++++++|++++....+...    . ... +.....    ..........    .......+++
T Consensus       122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  197 (537)
T PRK13382        122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA----GQRPEPTGRK  197 (537)
T ss_pred             ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC----cCCCCCCCCC
Confidence            999999999999999999999999998765543321    0 111 111110    0011111000    1111234678


Q ss_pred             eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCch
Q psy4550         163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPP  237 (251)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~  237 (251)
                      .++++|||||||.||||+++|+++..........+.+..+++++...|++     ..++.++..|+++++...   +++.
T Consensus       198 ~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~---~~~~  274 (537)
T PRK13382        198 GRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRR---FDPE  274 (537)
T ss_pred             CeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCC---cCHH
Confidence            89999999999999999999999988888777788888888886544332     346888999999998876   9999


Q ss_pred             HHHhhhhccccCC
Q psy4550         238 RLTSGWVRLPLNG  250 (251)
Q Consensus       238 ~~~~~i~~~~vt~  250 (251)
                      .+++.|+++++|.
T Consensus       275 ~~~~~i~~~~vt~  287 (537)
T PRK13382        275 ATLDLIDRHRATG  287 (537)
T ss_pred             HHHHHHHHhCCEE
Confidence            9999999999873

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=5.8e-33  Score=248.10  Aligned_cols=231  Identities=18%  Similarity=0.196  Sum_probs=173.5

Q ss_pred             HHHHHHHHhCCCceEEEecCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          17 YMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        17 ~~l~~~~~~~~~~~a~~~~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ..|.++..++|+++|++..+.       +++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||.++|+
T Consensus       179 ~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Ga  258 (728)
T PLN03052        179 CCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGC  258 (728)
T ss_pred             HHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            345555567899999985321       4799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhcc-CCCeeeec--------------chhhhhhhh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLERT-SVPKVKLE--------------NDFLSKMIS  145 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-~~~~~~~~--------------~~~~~~~~~  145 (251)
                      +++|++|.++.+++.+++++++++++|+++....         .+... ....+.+.              ..+.+....
T Consensus       259 v~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~  338 (728)
T PLN03052        259 VVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLAR  338 (728)
T ss_pred             EEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHHHHhc
Confidence            9999999999999999999999999999875421         11100 00111111              011111111


Q ss_pred             hhhc--ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhH-----HHHHHHHHh
Q psy4550         146 ENEK--LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNV-----FFVWEMLRP  218 (251)
Q Consensus       146 ~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  218 (251)
                      ....  ..........++++++|+|||||||.||||+++|.+++.........+++.++|+++...     ...+.++.+
T Consensus       339 ~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~  418 (728)
T PLN03052        339 ANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYAS  418 (728)
T ss_pred             cccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHH
Confidence            0000  000111123558999999999999999999999999887776666667889999887543     223456789


Q ss_pred             hhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         219 LTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       219 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      |..|+++++.+.  ..++..+++.+++++||
T Consensus       419 L~~Gat~vl~~g--~p~~~~~~~~i~~~~vT  447 (728)
T PLN03052        419 LLNGATLALYNG--SPLGRGFAKFVQDAKVT  447 (728)
T ss_pred             HHhCCEEEEeCC--CCCCChHHHHHHHHCCC
Confidence            999999999875  25677899999999998

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.5e-33  Score=265.87  Aligned_cols=230  Identities=26%  Similarity=0.464  Sum_probs=192.3

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~v  536 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWL  536 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEc-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            5799999999999999999985 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT  172 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  172 (251)
                      |++|..+.+++.++++++++++++++++..+.+....  .+.... .. .......   ........++++++|+|||||
T Consensus       537 pld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~a~i~~TSGS  609 (1296)
T PRK10252        537 PLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVP--DLTSLC-YN-APLAPQG---AAPLQLSQPHHTAYIIFTSGS  609 (1296)
T ss_pred             ecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCC--Cceeee-cc-ccccccc---CCCCCCCCCCCeEEEEECCCC
Confidence            9999999999999999999999999987665554321  110000 00 0000000   011122357899999999999


Q ss_pred             CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550         173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP  247 (251)
Q Consensus       173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~  247 (251)
                      ||.||||+++|+++.+.+......+++.++|++++..++     .+.++.++..|+++++.+.....+|..+++.|++++
T Consensus       610 TG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~  689 (1296)
T PRK10252        610 TGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYG  689 (1296)
T ss_pred             CCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999875533     456789999999999988766689999999999999


Q ss_pred             cCC
Q psy4550         248 LNG  250 (251)
Q Consensus       248 vt~  250 (251)
                      ||.
T Consensus       690 vt~  692 (1296)
T PRK10252        690 VTT  692 (1296)
T ss_pred             CeE
Confidence            973

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-33  Score=243.19  Aligned_cols=249  Identities=18%  Similarity=0.199  Sum_probs=190.5

Q ss_pred             CCCCCCCcCchhhhHHHHHHHHHHhCCCceEEEecCC-CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550           1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI   79 (251)
Q Consensus         1 m~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~-~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~   79 (251)
                      |..-..++.+...++.++|.+.++++|+++|+++.++ +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~   83 (534)
T PRK05852          4 MGGAAPMASDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV   83 (534)
T ss_pred             cccccchhhhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence            4444556677788999999999999999999986443 579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---C-eeeecchh-------hhhhhhhhh
Q psy4550          80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---P-KVKLENDF-------LSKMISENE  148 (251)
Q Consensus        80 ~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~-~~~~~~~~-------~~~~~~~~~  148 (251)
                      +++||+++|++++|++|..+.+++.++++.++++.+|++............   + .+......       .........
T Consensus        84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (534)
T PRK05852         84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATE  163 (534)
T ss_pred             HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccC
Confidence            999999999999999999999999999999999999987653322111100   0 01111000       000000000


Q ss_pred             cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcC
Q psy4550         149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQG  222 (251)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G  222 (251)
                      ............++.++++|||||||.||||.++|+++...+......+++..+|++++++++.      ..++.++..|
T Consensus       164 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g  243 (534)
T PRK05852        164 PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASG  243 (534)
T ss_pred             CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcC
Confidence            0000111122346789999999999999999999999999998888888999999888765432      2467788899


Q ss_pred             ccEEEecCccccCchHHHhhhhccccCC
Q psy4550         223 IPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       223 ~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +++++++. ..+++..+++.|+++++|.
T Consensus       244 ~~~~~~~~-~~~~~~~~~~~i~~~~~t~  270 (534)
T PRK05852        244 GAVLLPAR-GRFSAHTFWDDIKAVGATW  270 (534)
T ss_pred             CeEEeCCC-cCcCHHHHHHHHHHcCCcE
Confidence            98887542 2488999999999999873

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.6e-33  Score=243.73  Aligned_cols=232  Identities=16%  Similarity=0.168  Sum_probs=179.4

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+.. +++.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v   92 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIY-GKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN   92 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEE-CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence            5789999999999999999974 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----------CCCeeeecch------------hhhhhhhhhhc
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----------SVPKVKLEND------------FLSKMISENEK  149 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~~~~------------~~~~~~~~~~~  149 (251)
                      |++|..+.+++.++++.++++++|++++..+...+.           ..+.+.++..            +...... ...
T Consensus        93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  171 (579)
T PLN03102         93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQR-GEP  171 (579)
T ss_pred             eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhc-cCC
Confidence            999999999999999999999999988765443321           1112221110            0000000 000


Q ss_pred             ccC---CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhc
Q psy4550         150 LHN---VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQ  221 (251)
Q Consensus       150 ~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~  221 (251)
                      ...   .......++++++|+|||||||.||+|+++|+++..........+++...++++..+|++|     ..+.++..
T Consensus       172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~  251 (579)
T PLN03102        172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAAR  251 (579)
T ss_pred             CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHh
Confidence            000   0011235689999999999999999999999997655544444555666677665554432     34667889


Q ss_pred             CccEEEecCccccCchHHHhhhhccccC
Q psy4550         222 GIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      |+++++.+.   +++..+++.|+++++|
T Consensus       252 g~~~v~~~~---~~~~~~~~~i~~~~~t  276 (579)
T PLN03102        252 GGTSVCMRH---VTAPEIYKNIEMHNVT  276 (579)
T ss_pred             cCcEEeecc---CChHHHHHHHHHcCCe
Confidence            999999887   8899999999999998

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-33  Score=285.33  Aligned_cols=237  Identities=26%  Similarity=0.433  Sum_probs=196.7

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .+...++.++|.++++++|+++|+++ +++.+||+||.++++++|+.|.++|+++|++|+++++++++++++++||+++|
T Consensus      1570 ~~~~~~~~~~~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG 1648 (3956)
T PRK12467       1570 YPLARLVHQLIEDQAAATPEAVALVF-GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAG 1648 (3956)
T ss_pred             CCccccHHHHHHHHHHhCCCCeEEEe-CCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccC
Confidence            34456899999999999999999985 67789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV  167 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  167 (251)
                      ++++|++|..+.+++.++++++++++++++++..+.+... ....+..... .....   ............++++++|+
T Consensus      1649 ~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ayii 1724 (3956)
T PRK12467       1649 GAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQE-DDWLE---GYSDSNPAVNLAPQNLAYVI 1724 (3956)
T ss_pred             ceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccc-cchhc---cCCCCCCCCCCCCcCcEEEE
Confidence            9999999999999999999999999999988765544321 1122222111 00000   01111222345678999999


Q ss_pred             eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      |||||||+||||+++|+++.+.+......++++++|+++++.++     .+.++.++..|+++++.+.....+|..+++.
T Consensus      1725 yTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~ 1804 (3956)
T PRK12467       1725 YTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQL 1804 (3956)
T ss_pred             ECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHH
Confidence            99999999999999999999999999999999999999876544     3467899999999999987666799999999


Q ss_pred             hhccccCC
Q psy4550         243 WVRLPLNG  250 (251)
Q Consensus       243 i~~~~vt~  250 (251)
                      |++++||.
T Consensus      1805 i~~~~vt~ 1812 (3956)
T PRK12467       1805 IERQQVTT 1812 (3956)
T ss_pred             HHHcCCeE
Confidence            99999973

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-33  Score=246.55  Aligned_cols=243  Identities=16%  Similarity=0.206  Sum_probs=179.5

Q ss_pred             CCCcCchhhhHHHHHHHHHHhCCCceEEEecCC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550           5 NLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI   79 (251)
Q Consensus         5 ~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~   79 (251)
                      +++..+...++.++|.+.++++|+++|+++.+.     +.+||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus        41 ~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~  120 (624)
T PRK12582         41 RHPLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHAL  120 (624)
T ss_pred             CCCCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHH
Confidence            455666778999999999999999999985332     589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCeEeeCCCCCCH-----HHHHHHHhhcCccEEEEccch--hhhhh---ccCCCeeeecch-------hhhh
Q psy4550          80 SYIAIHKAGGGYLPLETSYPP-----ALLESVLDDAKPSIVITKGEY--MDRLE---RTSVPKVKLEND-------FLSK  142 (251)
Q Consensus        80 ~~~a~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~---~~~~~~~~~~~~-------~~~~  142 (251)
                      +++||+++|++++|++|.++.     +++.++++.++++++|+++..  ...+.   ......+.....       .+..
T Consensus       121 ~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  200 (624)
T PRK12582        121 MTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFAD  200 (624)
T ss_pred             HHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHH
Confidence            999999999999999998874     899999999999999998642  11111   111222222110       0011


Q ss_pred             hhhhhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC---CChhhhhHHHHH-----
Q psy4550         143 MISENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE---DDREACNVFFVW-----  213 (251)
Q Consensus       143 ~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----  213 (251)
                      ........ .........++++++|+|||||||.||||++||+++..+.......++...   .++.++++|++|     
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~  280 (624)
T PRK12582        201 LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGN  280 (624)
T ss_pred             HhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHH
Confidence            11100000 000112345689999999999999999999999999988776655555444   467777666543     


Q ss_pred             -HHHHhhhcCccEEEecCccccCch---HHHhhhhccccC
Q psy4550         214 -EMLRPLTQGIPMYVISDEVIYDPP---RLTSGWVRLPLN  249 (251)
Q Consensus       214 -~~~~~l~~G~~~v~~~~~~~~~~~---~~~~~i~~~~vt  249 (251)
                       .++.++..|+++++.+.  .+++.   .+++.++++++|
T Consensus       281 ~~~~~~l~~G~tvvl~~~--~~~~~~~~~~~~~i~~~~~t  318 (624)
T PRK12582        281 ANFNGLLWGGGTLYIDDG--KPLPGMFEETIRNLREISPT  318 (624)
T ss_pred             HHHHHHHhCceEEEEcCC--CcccchHHHHHHHHHhcCCe
Confidence             34567899999999764  24443   456677788776

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7e-33  Score=241.74  Aligned_cols=236  Identities=17%  Similarity=0.228  Sum_probs=184.0

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      .+...++.+++.+.++++|+++|+++. +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++
T Consensus        24 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~  103 (546)
T PLN02330         24 VPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA  103 (546)
T ss_pred             CCCCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence            345578999999999999999999863 4678999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecc-------hhhhhhhhhhhcccCCCCCCCCC
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN-------DFLSKMISENEKLHNVDFPQVGL  160 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  160 (251)
                      |++++|+++..+.+++.++++.++++++++++...+.+.......+....       .+.+..................+
T Consensus       104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (546)
T PLN02330        104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQ  183 (546)
T ss_pred             CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhccccCcccccccCCc
Confidence            99999999999999999999999999999998877766544433333221       11111111111000112233456


Q ss_pred             CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC----CChhhhhHHHHH------HHHHhhhcCccEEEecC
Q psy4550         161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE----DDREACNVFFVW------EMLRPLTQGIPMYVISD  230 (251)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~  230 (251)
                      +++++++|||||||.||||.++|+++..++...  .++...    .++.+.++|+++      .++.++..|+++++.+.
T Consensus       184 ~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~  261 (546)
T PLN02330        184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSR  261 (546)
T ss_pred             ccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecc
Confidence            889999999999999999999999998765432  223322    234454443322      34678899999999887


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                         +++..+++.++++++|
T Consensus       262 ---~~~~~~~~~i~~~~vt  277 (546)
T PLN02330        262 ---FELRTFLNALITQEVS  277 (546)
T ss_pred             ---cCHHHHHHHHHHcCCe
Confidence               9999999999999987

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.9e-33  Score=267.91  Aligned_cols=238  Identities=25%  Similarity=0.408  Sum_probs=187.4

Q ss_pred             hhHHHHHHHHHHhCCCceEEEec--------CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDH--------DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI   84 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~--------~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~   84 (251)
                      .++.++|.++++++|+++|+++.        +++++||+||.++++++|.+|++.|+++|++|+++++|+++++++++||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            57999999999999999999742        3568999999999999999999999999999999999999999999999


Q ss_pred             HHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh---hhhhcc---------CCCeeeecchh-h----------h
Q psy4550          85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM---DRLERT---------SVPKVKLENDF-L----------S  141 (251)
Q Consensus        85 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~---------~~~~~~~~~~~-~----------~  141 (251)
                      +++|++++|++|..+.+++.++++.+++++++++....   ..+...         ..+.+...... .          .
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETD  395 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccccccc
Confidence            99999999999999999999999999999999875421   111100         01111111100 0          0


Q ss_pred             hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHH
Q psy4550         142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEML  216 (251)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  216 (251)
                      ..................++++++|+|||||||.||||+++|+++.+.+......+++.++|+++...++     .+.++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~  475 (1389)
T TIGR03443       396 VLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMF  475 (1389)
T ss_pred             ccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHH
Confidence            0000000000011123457899999999999999999999999999999988899999999998765543     45789


Q ss_pred             HhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .++..|+++++++.....+|..+++.|++++||.
T Consensus       476 ~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~  509 (1389)
T TIGR03443       476 TPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATV  509 (1389)
T ss_pred             HHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeE
Confidence            9999999999988755568999999999999983

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.4e-33  Score=250.54  Aligned_cols=236  Identities=16%  Similarity=0.157  Sum_probs=184.2

Q ss_pred             hhhhHHHHHHHHHHhCCC-ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          11 AEGALHYMFRNQAKRTPD-KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~-~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +..++.++|.+.++++|+ ++|+.+.+++.+||+|+.++++++|++|.+. +++||+|+++++|+++++++++||+++|+
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~  280 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR  280 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence            456899999999999998 5888643447899999999999999999987 59999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhc--c-----CCCeeeecch-----hhhhhh-hhhhcccCCCCC
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER--T-----SVPKVKLEND-----FLSKMI-SENEKLHNVDFP  156 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~-----~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~  156 (251)
                      +++|+++.++.+++.++++++++++++++++..+....  .     ....+.....     +..... ............
T Consensus       281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (718)
T PRK08043        281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRLAQV  360 (718)
T ss_pred             cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCccccC
Confidence            99999999999999999999999999998776543110  0     0111111110     000000 000000001112


Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecC
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~  230 (251)
                      ...++++++++|||||||.||||++||+++...+......++++++|++++.+|++      ..++.++..|+++++.+.
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~  440 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS  440 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence            34678999999999999999999999999999988888888999999998876553      246788999999999875


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                        .+++..+++.++++++|
T Consensus       441 --~~~~~~~~~~i~~~~vt  457 (718)
T PRK08043        441 --PLHYRIVPELVYDRNCT  457 (718)
T ss_pred             --cccHHHHHHHHHhcCCe
Confidence              36778889999999987

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=7.4e-33  Score=241.65  Aligned_cols=235  Identities=20%  Similarity=0.284  Sum_probs=186.7

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      +.++.++|.+.++.+|+++|+++.+     .+.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|+++
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~  102 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR  102 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            4589999999999999999998633     27899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhc----c-CCCe-eeecc----hhhhhhhhhh----
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLER----T-SVPK-VKLEN----DFLSKMISEN----  147 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~~-~~~~~----~~~~~~~~~~----  147 (251)
                      +|++++|++|..+.+++.++++.++++++++++++.     +...+    . .... +....    .+........    
T Consensus       103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (547)
T PRK13295        103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQE  182 (547)
T ss_pred             cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCccccc
Confidence            999999999999999999999999999999987541     11111    0 1111 11111    1111111000    


Q ss_pred             hcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhh
Q psy4550         148 EKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLT  220 (251)
Q Consensus       148 ~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~  220 (251)
                      ... .........++++++++|||||||.||+|+++|+++..++......+++.+++++++.+++      .++++.++.
T Consensus       183 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~  262 (547)
T PRK13295        183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVM  262 (547)
T ss_pred             cccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHH
Confidence            000 0011223456899999999999999999999999999998888888899999998775543      345788899


Q ss_pred             cCccEEEecCccccCchHHHhhhhccccC
Q psy4550         221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .|+++++.+.   +++..+++.++++++|
T Consensus       263 ~G~~~~~~~~---~~~~~~~~~l~~~~vt  288 (547)
T PRK13295        263 LGATAVLQDI---WDPARAAELIRTEGVT  288 (547)
T ss_pred             cCCeEEeCCC---CCHHHHHHHHHHcCCc
Confidence            9999999886   8999999999999987

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-33  Score=242.43  Aligned_cols=235  Identities=17%  Similarity=0.169  Sum_probs=178.1

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCC-CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDG-RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~-~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      .+.++.+.|.+.++++|+++|+++.++ +.+||+||.+++.++|+.|.++|+++|++|+++++|+++++++++||+++|+
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~   91 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGA   91 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence            456899999999999999999985443 6799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeeecchhhhhh-hhhhhcccCCCCCCCCCCCe
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKLENDFLSKM-ISENEKLHNVDFPQVGLDDI  163 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  163 (251)
                      +++|+++..+.+++.++++.++++.+++++.........     ..+.+..+....... ................++++
T Consensus        92 v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (540)
T PRK05857         92 IAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDP  171 (540)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCCCCe
Confidence            999999999999999999999999999987653221110     111222211110000 00000000011234466899


Q ss_pred             EEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCcccc
Q psy4550         164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIY  234 (251)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~  234 (251)
                      ++++|||||||.||||.++|+++.++......    .+++..+++.++.+|++     ...+.+++.|+++++. .   .
T Consensus       172 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~-~---~  247 (540)
T PRK05857        172 LAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTG-G---E  247 (540)
T ss_pred             EEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEec-C---C
Confidence            99999999999999999999999876554332    23455667776655442     2457889999988764 3   6


Q ss_pred             CchHHHhhhhccccC
Q psy4550         235 DPPRLTSGWVRLPLN  249 (251)
Q Consensus       235 ~~~~~~~~i~~~~vt  249 (251)
                      ++..+++.|++|++|
T Consensus       248 ~~~~~~~~i~~~~it  262 (540)
T PRK05857        248 NTTSLLEILTTNAVA  262 (540)
T ss_pred             ChhHHHHHHHhcCcc
Confidence            889999999999987

>KOG1176|consensus

Probab=100.00  E-value=4.2e-33  Score=236.77  Aligned_cols=222  Identities=24%  Similarity=0.357  Sum_probs=172.3

Q ss_pred             hCCCc-eEEEecC--CCeeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550          25 RTPDK-IAVVDHD--GRSITFKQLDEWTDIVGTYLINQG--CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP   99 (251)
Q Consensus        25 ~~~~~-~a~~~~~--~~~~T~~~l~~~~~~~a~~L~~~g--~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~   99 (251)
                      .++++ +.++...  |+.+||+|+.+++.++|.+|.++|  +++||+|++++||+++++.+++||..+|+++.++||..+
T Consensus        28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~  107 (537)
T KOG1176|consen   28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLT  107 (537)
T ss_pred             ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccC
Confidence            33444 6666433  599999999999999999999876  889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecch-----hhh-------hhhhhhhcccCCCCCCCCCCCe
Q psy4550         100 PALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLEND-----FLS-------KMISENEKLHNVDFPQVGLDDI  163 (251)
Q Consensus       100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~  163 (251)
                      +.++.+.++.++++++|++.+..++.....    ...+.+...     ...       .........+.. .....++|+
T Consensus       108 ~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~  186 (537)
T KOG1176|consen  108 ASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG-IRPVSEDDT  186 (537)
T ss_pred             HHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcc-cccCCCCCe
Confidence            999999999999999999999887765432    233332221     000       000011111111 345566999


Q ss_pred             EEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHH-hhhcCccEEEecCccccCch
Q psy4550         164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLR-PLTQGIPMYVISDEVIYDPP  237 (251)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~l~~G~~~v~~~~~~~~~~~  237 (251)
                      +.++|||||||.||||++||++++.+.......+.....|+.++.+|++|     .++. .+..|++++..+.   |++.
T Consensus       187 ~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~---f~~~  263 (537)
T KOG1176|consen  187 AAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK---FDAE  263 (537)
T ss_pred             EEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC---CCHH
Confidence            99999999999999999999999999888777788888999998777654     2344 4444555555554   8999


Q ss_pred             HHHhhhhccccCC
Q psy4550         238 RLTSGWVRLPLNG  250 (251)
Q Consensus       238 ~~~~~i~~~~vt~  250 (251)
                      .+++.|++||||.
T Consensus       264 ~~~~~i~kykvt~  276 (537)
T KOG1176|consen  264 LFLDLIEKYKVTH  276 (537)
T ss_pred             HHHHHHHHhCEEE
Confidence            9999999999983

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-32  Score=241.70  Aligned_cols=233  Identities=22%  Similarity=0.291  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHH-hCCCceEEEecC---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          13 GALHYMFRNQAK-RTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        13 ~~l~~~l~~~~~-~~~~~~a~~~~~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      +.+.+++.+++. .+|+++|+.+.+   ++.+||+||.+++.++|.+|.++|+++||+|+++++|+++++++++||+++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G  122 (570)
T PRK04319         43 NIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNG  122 (570)
T ss_pred             eHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            445677877776 579999997532   3689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC---Cee-eecc---------hhhhhhhhhhhcccCCCC
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV---PKV-KLEN---------DFLSKMISENEKLHNVDF  155 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~-~~~~---------~~~~~~~~~~~~~~~~~~  155 (251)
                      ++++|+++..+++++.++++.++++++++++...+.......   ..+ ....         ++......   .......
T Consensus       123 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  199 (570)
T PRK04319        123 AIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQ---ASDEFDI  199 (570)
T ss_pred             cEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhh---cCCcCCc
Confidence            999999999999999999999999999998876544321111   111 1111         11111111   1111222


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEec
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVIS  229 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~  229 (251)
                      ....++++++++|||||||.||||+++|+++...+......+++.++|++++..+.      .+.++.++..|+++++.+
T Consensus       200 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~  279 (570)
T PRK04319        200 EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG  279 (570)
T ss_pred             cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence            34466899999999999999999999999999888888888889999987764432      346789999999999987


Q ss_pred             CccccCchHHHhhhhccccCC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .  .+++..+++.|+++++|.
T Consensus       280 ~--~~~~~~~~~~i~~~~~t~  298 (570)
T PRK04319        280 G--RFSPERWYRILEDYKVTV  298 (570)
T ss_pred             C--CCCHHHHHHHHHHcCCeE
Confidence            5  489999999999999973

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-32  Score=238.61  Aligned_cols=233  Identities=22%  Similarity=0.288  Sum_probs=190.5

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      .+.++.+.|.+.++++|+++|+.+ +++++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~i~~~l~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~   81 (513)
T PRK07656          3 EWMTLPELLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV   81 (513)
T ss_pred             ccccHHHHHHHHHHHCCCCeEEEe-CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence            346899999999999999999985 7788999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecch----------hhhhhhhhhhcccCCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LEND----------FLSKMISENEKLHNVD  154 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~----------~~~~~~~~~~~~~~~~  154 (251)
                      ++|+++..+.+++.++++.++++++++++.........     ....+. ....          .+.......  .....
T Consensus        82 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  159 (513)
T PRK07656         82 VVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAG--DPAER  159 (513)
T ss_pred             EEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcC--CCCCC
Confidence            99999999999999999999999999988765443221     111111 1100          001111110  00122


Q ss_pred             CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEe
Q psy4550         155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVI  228 (251)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~  228 (251)
                      .....++++++++|||||||.||+|.++|.++...+......+++.+++++++.+++.      ..++.++..|+++++.
T Consensus       160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~  239 (513)
T PRK07656        160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL  239 (513)
T ss_pred             cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence            3345778999999999999999999999999999998888889999999988765442      3468889999999998


Q ss_pred             cCccccCchHHHhhhhccccC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      +.   +++..+++.|+++++|
T Consensus       240 ~~---~~~~~~~~~i~~~~~t  257 (513)
T PRK07656        240 PV---FDPDEVFRLIETERIT  257 (513)
T ss_pred             Cc---CCHHHHHHHHHHhCCe
Confidence            76   8999999999999987

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.1e-33  Score=285.18  Aligned_cols=237  Identities=27%  Similarity=0.475  Sum_probs=196.9

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .+...++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|
T Consensus       507 ~~~~~~~~~~~~~~a~~~p~~~A~~~-~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG  585 (5163)
T PRK12316        507 YPLQRGVHRLFEEQVERTPEAPALAF-GEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG  585 (5163)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCeEEEe-CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            34456899999999999999999985 66789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV  167 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  167 (251)
                      ++++|++|..+.+++.++++++++++++++....+.+... ....+..... .....   ............++++++|+
T Consensus       586 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~a~ii  661 (5163)
T PRK12316        586 GAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP-AAWLE---GYSEENPGTELNPENLAYVI  661 (5163)
T ss_pred             CEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc-chhhc---cCCCCCCCCCCCCCCeEEEE
Confidence            9999999999999999999999999999998765544321 1222222111 00000   01111222345678999999


Q ss_pred             eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      |||||||.||||+++|+++.+.+......+++.+++++++.+++     .+.++.++..|+++++.+....++|..+++.
T Consensus       662 ~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~  741 (5163)
T PRK12316        662 YTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVEL  741 (5163)
T ss_pred             ECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHH
Confidence            99999999999999999999999999999999999999876644     3467999999999999986667899999999


Q ss_pred             hhccccCC
Q psy4550         243 WVRLPLNG  250 (251)
Q Consensus       243 i~~~~vt~  250 (251)
                      |++++||.
T Consensus       742 i~~~~vt~  749 (5163)
T PRK12316        742 INREGVDT  749 (5163)
T ss_pred             HHHcCCeE
Confidence            99999973

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-32  Score=239.06  Aligned_cols=232  Identities=16%  Similarity=0.203  Sum_probs=186.9

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      |...++.++|.+.+.  ++++++.. +++.+||.||.+++.++|.+|+++ |+++|++|+++++|+++++++++||+++|
T Consensus         2 ~~~~~~~~~l~~~a~--~~~~a~~~-~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G   78 (529)
T PRK07867          2 SSAPTVAELLLPLAE--DDDRGLYF-EDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSG   78 (529)
T ss_pred             CccccHHHHHHHhcc--cCCceEEE-CCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            445578899988775  78899974 778999999999999999999997 89999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC--CCeeeecch-hhhhhhhhhhcccCCCCCCCCCCCeEE
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLEND-FLSKMISENEKLHNVDFPQVGLDDIAY  165 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (251)
                      ++++|+++..+.+++.++++.+++++++++++..+.+....  ...+..... +...+.....  .........++++++
T Consensus        79 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  156 (529)
T PRK07867         79 IVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRD--AEPPFRVADPDDLFM  156 (529)
T ss_pred             CEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCC--CCCCcccCCccceEE
Confidence            99999999999999999999999999999988766544321  112222211 1111111111  111223456789999


Q ss_pred             EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHH
Q psy4550         166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRL  239 (251)
Q Consensus       166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~  239 (251)
                      ++|||||||.||||+++|+++..+.......+++.++|+++..++++      ..++.++..|+++++.+.   +++..+
T Consensus       157 i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~  233 (529)
T PRK07867        157 LIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK---FSASGF  233 (529)
T ss_pred             EEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC---CCHHHH
Confidence            99999999999999999999998888888889999999887755443      235567889999999876   899999


Q ss_pred             HhhhhccccC
Q psy4550         240 TSGWVRLPLN  249 (251)
Q Consensus       240 ~~~i~~~~vt  249 (251)
                      ++.++++++|
T Consensus       234 ~~~i~~~~vt  243 (529)
T PRK07867        234 LPDVRRYGAT  243 (529)
T ss_pred             HHHHHHhCCe
Confidence            9999999987

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.5e-32  Score=238.17  Aligned_cols=236  Identities=17%  Similarity=0.270  Sum_probs=185.3

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      ..+++.++|.+.++++|+++|+...+    .+.+||.||.++++++|..|.++|+++||+|+++++|+.+++++++||++
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~   84 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK   84 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            34689999999999999999998532    36899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC------CCeeee-cch------h--hhhhhhhhhccc
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS------VPKVKL-END------F--LSKMISENEKLH  151 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~-~~~------~--~~~~~~~~~~~~  151 (251)
                      +|+++++++|..+.+++.++++.++++.++++++..+.+.+..      ...+.. ...      .  .......... .
T Consensus        85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  163 (517)
T PRK08008         85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPA-T  163 (517)
T ss_pred             cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCc-c
Confidence            9999999999999999999999999999999987655443211      111111 110      0  0000000000 0


Q ss_pred             CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccE
Q psy4550         152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPM  225 (251)
Q Consensus       152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~  225 (251)
                      ........++++++++|||||||.||+|+++|+++............+..++++++.+|++      ..++.++..|+++
T Consensus       164 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~  243 (517)
T PRK08008        164 LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF  243 (517)
T ss_pred             ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEE
Confidence            0112234568999999999999999999999999987655444445677888887766533      3467889999999


Q ss_pred             EEecCccccCchHHHhhhhccccCC
Q psy4550         226 YVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       226 v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++.+.   +++..+++.|+++++|.
T Consensus       244 ~~~~~---~~~~~~~~~i~~~~~t~  265 (517)
T PRK08008        244 VLLEK---YSARAFWGQVCKYRATI  265 (517)
T ss_pred             EEccc---cCHHHHHHHHHHcCCcE
Confidence            99887   89999999999999873

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.2e-32  Score=243.89  Aligned_cols=235  Identities=20%  Similarity=0.264  Sum_probs=178.4

Q ss_pred             hHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ...++|.++++.+|+++|++..+     .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus        58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G  137 (625)
T TIGR02188        58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG  137 (625)
T ss_pred             HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence            45677778888899999998422     2579999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hccC--CCe-eeecc------------hhh
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERTS--VPK-VKLEN------------DFL  140 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~~--~~~-~~~~~------------~~~  140 (251)
                      ++++|+++..+.+++.+++++++++++|+++....         .+    ....  ... +....            ...
T Consensus       138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (625)
T TIGR02188       138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWW  217 (625)
T ss_pred             CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccH
Confidence            99999999999999999999999999999875321         11    1110  111 11110            000


Q ss_pred             hhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH------HH
Q psy4550         141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF------VW  213 (251)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~  213 (251)
                      ......  ...........++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..+.      .+
T Consensus       218 ~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~  295 (625)
T TIGR02188       218 HDLMAK--ASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSY  295 (625)
T ss_pred             HHHHhh--cCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHH
Confidence            111000  0011122345678999999999999999999999999875543 44456788899998765432      24


Q ss_pred             HHHHhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550         214 EMLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       214 ~~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .++.++..|+++++.+. ...+++..+++.|+++++|.
T Consensus       296 ~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~  333 (625)
T TIGR02188       296 IVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTI  333 (625)
T ss_pred             HHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeE
Confidence            57889999999999763 12358999999999999973

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.8e-32  Score=243.23  Aligned_cols=235  Identities=19%  Similarity=0.224  Sum_probs=178.4

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEec---CC-----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDH---DG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY   81 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~---~~-----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~   81 (251)
                      +...++.++|.+.++++|+++|+...   ++     +.+||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|++++
T Consensus        39 ~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~  118 (660)
T PLN02430         39 SDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM  118 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            46679999999999999999998531   12     24799999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-hhhhcc-----CCCee-eecchh---------------
Q psy4550          82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERT-----SVPKV-KLENDF---------------  139 (251)
Q Consensus        82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~-----~~~~~-~~~~~~---------------  139 (251)
                      +||+++|++++|+++..+++++.++++.++++++|+++... +.+...     ....+ ......               
T Consensus       119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  198 (660)
T PLN02430        119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY  198 (660)
T ss_pred             HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEE
Confidence            99999999999999999999999999999999999987532 222110     11111 111100               


Q ss_pred             -hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh-----CCCCCCChhhhhHHHHH
Q psy4550         140 -LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA-----YPYDEDDREACNVFFVW  213 (251)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  213 (251)
                       +.......... ........++++++|+|||||||.||||++||+|+..++......     .+++++|++++.+|+.|
T Consensus       199 ~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H  277 (660)
T PLN02430        199 SWIDFLHMGKEN-PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH  277 (660)
T ss_pred             EHHHHHHhhccC-CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHH
Confidence             00110011100 111223457899999999999999999999999999887665432     14678888888776643


Q ss_pred             H-----HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         214 E-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       214 ~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .     .+.++..|+++++..    .++..+++.++++++|
T Consensus       278 ~~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~l~~~~pt  314 (660)
T PLN02430        278 ILDRMIEEYFFRKGASVGYYH----GDLNALRDDLMELKPT  314 (660)
T ss_pred             HHHHHHHHHHHHcCCEEEEeC----CChhhHHHHHHHhCCc
Confidence            2     344678899988865    3678899999999887

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-32  Score=243.79  Aligned_cols=237  Identities=18%  Similarity=0.157  Sum_probs=172.7

Q ss_pred             hhHHHHHHHHHHh--CCCceEEEec--C---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550          13 GALHYMFRNQAKR--TPDKIAVVDH--D---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus        13 ~~l~~~l~~~~~~--~~~~~a~~~~--~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      +...+++.++++.  +|+++|++..  +   .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||.
T Consensus        59 n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~  138 (647)
T PTZ00237         59 NTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCA  138 (647)
T ss_pred             eHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            3456777777654  7899999752  1   3579999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccch---------hhhhhcc------CCCeee-ecc------------
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY---------MDRLERT------SVPKVK-LEN------------  137 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~------~~~~~~-~~~------------  137 (251)
                      ++|++++|+++.++.+++.+++++++++++|+++..         .+.+...      ....+. ...            
T Consensus       139 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  218 (647)
T PTZ00237        139 RIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKI  218 (647)
T ss_pred             HhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccc
Confidence            999999999999999999999999999999997531         1111110      011111 100            


Q ss_pred             ----------hhhhhhhhhh--hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHH-HHHHHHHHHHhCCCCCCCh
Q psy4550         138 ----------DFLSKMISEN--EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG-AVHAYKWRHRAYPYDEDDR  204 (251)
Q Consensus       138 ----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~  204 (251)
                                .+.+.+....  ............++++++|+|||||||.||||+++|.+ +..........++...+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~  298 (647)
T PTZ00237        219 ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTV  298 (647)
T ss_pred             cccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcE
Confidence                      0000000000  00000112345678999999999999999999999998 5444444344556777888


Q ss_pred             hhhhHH-----HHHHHHHhhhcCccEEEecCccccC----chHHHhhhhccccCC
Q psy4550         205 EACNVF-----FVWEMLRPLTQGIPMYVISDEVIYD----PPRLTSGWVRLPLNG  250 (251)
Q Consensus       205 ~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~----~~~~~~~i~~~~vt~  250 (251)
                      +++..+     ++..++.++..|+++++.+.. .+.    +..+++.|++++||.
T Consensus       299 ~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~-~~~p~~~~~~~~~~i~~~~vt~  352 (647)
T PTZ00237        299 VFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGG-IIKNKHIEDDLWNTIEKHKVTH  352 (647)
T ss_pred             EEEcCCCceEeeHHHHHHHHhCCcEEEEeCCC-CCCCCCchHHHHHHHHHhCeEE
Confidence            876543     233578899999999997742 122    688999999999983

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.7e-32  Score=239.92  Aligned_cols=229  Identities=22%  Similarity=0.350  Sum_probs=174.0

Q ss_pred             HHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          16 HYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        16 ~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ..++.+  +.+|+++|+++.. +.++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|
T Consensus        44 ~~l~~~--~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~  121 (560)
T PLN02574         44 SFIFSH--HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT  121 (560)
T ss_pred             HHHhcC--cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeC
Confidence            344443  6789999998743 3479999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhh---------hhhhhhhhcccCCCCCCCCCCCeE
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL---------SKMISENEKLHNVDFPQVGLDDIA  164 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  164 (251)
                      ++|..+.+++.++++.+++++++++++..+.+.....+.+.....+.         ...................+++++
T Consensus       122 l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  201 (560)
T PLN02574        122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQDDVA  201 (560)
T ss_pred             cCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccccCccCcccHHHHhhcCCcccccCCCCcCCEE
Confidence            99999999999999999999999998776665443333222211110         000000000011122334568999


Q ss_pred             EEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCC-CCChhhhhHHHHH------HHHHhhhcCccEEEecCccc
Q psy4550         165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYD-EDDREACNVFFVW------EMLRPLTQGIPMYVISDEVI  233 (251)
Q Consensus       165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~  233 (251)
                      +++|||||||.||||++||+++...+.....    .++.. .+++++.++|++|      .++.++..|+++++.+.   
T Consensus       202 ~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---  278 (560)
T PLN02574        202 AIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR---  278 (560)
T ss_pred             EEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC---
Confidence            9999999999999999999999987765543    22222 4566665554432      24567788999999886   


Q ss_pred             cCchHHHhhhhccccC
Q psy4550         234 YDPPRLTSGWVRLPLN  249 (251)
Q Consensus       234 ~~~~~~~~~i~~~~vt  249 (251)
                      +++..+++.|++|++|
T Consensus       279 ~~~~~~~~~i~~~~~t  294 (560)
T PLN02574        279 FDASDMVKVIDRFKVT  294 (560)
T ss_pred             CCHHHHHHHHHHcCCe
Confidence            8999999999999998

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.9e-32  Score=239.32  Aligned_cols=235  Identities=22%  Similarity=0.282  Sum_probs=181.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCC---------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGR---------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI   82 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~---------~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~   82 (251)
                      ..++.++|.+.++++|+++|+++.++.         .+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l   84 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF   84 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence            347889999999999999999864432         79999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc--chhhhhhcc---CC-Ceeeecch------hhhhhhhhhhcc
Q psy4550          83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG--EYMDRLERT---SV-PKVKLEND------FLSKMISENEKL  150 (251)
Q Consensus        83 a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~--~~~~~~~~~---~~-~~~~~~~~------~~~~~~~~~~~~  150 (251)
                      ||+++|++++|++|..+.+++.++++.++++++|+++  ...+.+...   .. ..+.....      ....... ....
T Consensus        85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~  163 (552)
T PRK09274         85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLR-DGAA  163 (552)
T ss_pred             HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcc-cCcc
Confidence            9999999999999999999999999999999999975  222222111   01 11111110      0011100 0000


Q ss_pred             cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHHHHHhhhcCccEEEecC
Q psy4550         151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~  230 (251)
                      .........++++++++|||||||.||+|+++|+++...+......+++.++++.++.+|+++  +..+..|+++++.+.
T Consensus       164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~~~~g~~~~~~~~  241 (552)
T PRK09274        164 APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFA--LFGPALGMTSVIPDM  241 (552)
T ss_pred             ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHH--hhhhhhCCeEEecCc
Confidence            111223346689999999999999999999999999999988888889999998887776653  234566888887652


Q ss_pred             c----cccCchHHHhhhhccccC
Q psy4550         231 E----VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~----~~~~~~~~~~~i~~~~vt  249 (251)
                      .    ..+++..+++.|+++++|
T Consensus       242 ~~~~~~~~~~~~~~~~i~~~~vt  264 (552)
T PRK09274        242 DPTRPATVDPAKLFAAIERYGVT  264 (552)
T ss_pred             ccccccccCHHHHHHHHHHcCCe
Confidence            1    237899999999999997

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.6e-32  Score=238.28  Aligned_cols=234  Identities=21%  Similarity=0.269  Sum_probs=186.1

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+++.+++.+||+|+.+++.++|++|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  102 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSV  102 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            47899999999999999999976668999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhh----ccC-C-Ceeeecchhhh----hhhhhhhc-ccCCCCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLE----RTS-V-PKVKLENDFLS----KMISENEK-LHNVDFP  156 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~----~~~-~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~  156 (251)
                      |++|..+.+++.++++.++++++++++...     +.+.    ... . ..+........    ........ .......
T Consensus       103 ~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (547)
T PRK06087        103 PLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAI  182 (547)
T ss_pred             ccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccCCC
Confidence            999999999999999999999999976431     1111    100 0 11111110000    00000000 0001122


Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecC
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~  230 (251)
                      ....+++++|+|||||||.||+|.++|.++..........+++.++|++++..++      ..+++.++..|+++++...
T Consensus       183 ~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~  262 (547)
T PRK06087        183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDI  262 (547)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCC
Confidence            3466899999999999999999999999999888888888889999998875543      2356788899999999887


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                         +++..+++.|+++++|
T Consensus       263 ---~~~~~~~~~i~~~~~t  278 (547)
T PRK06087        263 ---FTPDACLALLEQQRCT  278 (547)
T ss_pred             ---CCHHHHHHHHHHcCCC
Confidence               8999999999999987

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-32  Score=237.31  Aligned_cols=228  Identities=21%  Similarity=0.277  Sum_probs=185.4

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..+.+.|.+.++.+|+++|+++ +++.+||.||.++++++|++|++ .|+++|++|+++++|+++++++++||+++|+++
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   80 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIIT-EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA   80 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEE-CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            3578999999999999999985 78899999999999999999986 799999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC----CeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV----PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV  167 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  167 (251)
                      +|+++..+.+++..+++.+++++++++++..+.+.....    ..+....++... ...    .........++++++++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~i~  155 (496)
T PRK06839         81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEI-EDR----KIDNFVEKNESASFIIC  155 (496)
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhh-hcc----CCCCCCCCCCCCcEEEE
Confidence            999999999999999999999999999877655433211    111111111111 111    01122344568899999


Q ss_pred             eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHHHh
Q psy4550         168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLTS  241 (251)
Q Consensus       168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~  241 (251)
                      |||||||.||+|.++|+++..........+++..+|+++..+|++      ..++.++..|+++++.+.   +++..+++
T Consensus       156 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~  232 (496)
T PRK06839        156 YTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK---FEPTKALS  232 (496)
T ss_pred             eCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC---CCHHHHHH
Confidence            999999999999999999988777777778888999887655432      234678899999998876   89999999


Q ss_pred             hhhccccC
Q psy4550         242 GWVRLPLN  249 (251)
Q Consensus       242 ~i~~~~vt  249 (251)
                      .++++++|
T Consensus       233 ~i~~~~~t  240 (496)
T PRK06839        233 MIEKHKVT  240 (496)
T ss_pred             HHHhhCCe
Confidence            99999987

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-32  Score=234.96  Aligned_cols=233  Identities=19%  Similarity=0.220  Sum_probs=186.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      |.++.++|.++++++|+++|+++ +++.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVY-RDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF   79 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEE-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            45788999999999999999984 77899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhh-hcccCCCCCCCCCCCeEEEEecc
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISEN-EKLHNVDFPQVGLDDIAYIVYSS  170 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TS  170 (251)
                      +|+++..+.+++.++++.+++++++++++....... ....+.............. ............++++++++|||
T Consensus        80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  158 (497)
T PRK06145         80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTS  158 (497)
T ss_pred             EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccchhHHHhccCCCCCCCCCCCccceEEEEeCC
Confidence            999999999999999999999999998776543321 1111211111000000000 00111122345678999999999


Q ss_pred             CCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       171 GtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      ||||.||+|.+||+++...+......+++..+++++...++++      ..+.++..|+++++.+.   +++..+++.++
T Consensus       159 GTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~i~  235 (497)
T PRK06145        159 GTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE---FDPEAVLAAIE  235 (497)
T ss_pred             CCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc---CCHHHHHHHHH
Confidence            9999999999999999877766677788899998877655432      34678899999999887   89999999999


Q ss_pred             ccccC
Q psy4550         245 RLPLN  249 (251)
Q Consensus       245 ~~~vt  249 (251)
                      ++++|
T Consensus       236 ~~~~t  240 (497)
T PRK06145        236 RHRLT  240 (497)
T ss_pred             HhCCe
Confidence            99987

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-32  Score=282.15  Aligned_cols=235  Identities=26%  Similarity=0.459  Sum_probs=194.2

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .+...++.++|.+.++++|+++|+++ .++.+||+||.++++++|..|.++|+++|++|+++++|+++++++++||+++|
T Consensus      1999 ~~~~~~~~~~~~~~a~~~p~~~A~~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aG 2077 (5163)
T PRK12316       1999 YPRGPGVHQRIAEQAARAPEAIAVVF-GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077 (5163)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEc-CCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhc
Confidence            34455899999999999999999985 66789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV  167 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  167 (251)
                      ++++|++|..+.+++.++++++++++++++++....+... ....+.....  ....   ............++++++|+
T Consensus      2078 a~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~a~ii 2152 (5163)
T PRK12316       2078 GAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEWA---DYPDTAPAVQLAGENLAYVI 2152 (5163)
T ss_pred             eEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhhh---ccCccCCCCCCCCCCeEEEE
Confidence            9999999999999999999999999999998766544321 1112222111  0000   00111223345789999999


Q ss_pred             eccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      |||||||+||||+++|+++.+.+......++++++|+++.+.++     .+.++.+|..|+++++.+. ..++|..+++.
T Consensus      2153 ~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~-~~~~~~~~~~~ 2231 (5163)
T PRK12316       2153 YTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDD-ELWDPEQLYDE 2231 (5163)
T ss_pred             eCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCc-ccCCHHHHHHH
Confidence            99999999999999999999999999999999999999876654     3468999999999977653 35799999999


Q ss_pred             hhccccCC
Q psy4550         243 WVRLPLNG  250 (251)
Q Consensus       243 i~~~~vt~  250 (251)
                      |++++||.
T Consensus      2232 i~~~~vt~ 2239 (5163)
T PRK12316       2232 MERHGVTI 2239 (5163)
T ss_pred             HHHcCCeE
Confidence            99999973

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-32  Score=238.15  Aligned_cols=238  Identities=19%  Similarity=0.312  Sum_probs=188.8

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .+...++.++|.+.++++|+++|+++ +++++||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus         6 ~~~~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G   84 (540)
T PRK06164          6 APRADTLASLLDAHARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLG   84 (540)
T ss_pred             ccCCCCHHHHHHHHHHhCCCCeEEec-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence            44556899999999999999999984 67789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh-----hhhhcc------CCCee-eecchhh---h--------hhhh
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRLERT------SVPKV-KLENDFL---S--------KMIS  145 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~------~~~~~-~~~~~~~---~--------~~~~  145 (251)
                      ++++|+++..+.+++.++++.+++++++++++..     +.+...      ....+ .......   .        ....
T Consensus        85 ~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (540)
T PRK06164         85 ATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFAL  164 (540)
T ss_pred             cEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccc
Confidence            9999999999999999999999999999987642     111111      01111 1110000   0        0000


Q ss_pred             hhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhh
Q psy4550         146 ENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPL  219 (251)
Q Consensus       146 ~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l  219 (251)
                      ..... .........++++++++|||||||.||+|+++|+++...+......+++..++++++.+|+     ...++.++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  244 (540)
T PRK06164        165 PDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGAL  244 (540)
T ss_pred             cccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHH
Confidence            00000 0000122346789999999999999999999999999999988999999999999876654     23578899


Q ss_pred             hcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         220 TQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       220 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ..|+++++.+.   +++..+++.|+++++|.
T Consensus       245 ~~G~~~~~~~~---~~~~~~~~~l~~~~~t~  272 (540)
T PRK06164        245 AGGAPLVCEPV---FDAARTARALRRHRVTH  272 (540)
T ss_pred             hcCceEEecCC---CCHHHHHHHHHHhCCee
Confidence            99999999886   89999999999999973

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-32  Score=243.27  Aligned_cols=234  Identities=21%  Similarity=0.218  Sum_probs=173.0

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEec--------------------------CCCeeeHHHHHHHHHHHHHHHHhcCCCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDH--------------------------DGRSITFKQLDEWTDIVGTYLINQGCIV   63 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~--------------------------~~~~~T~~~l~~~~~~~a~~L~~~g~~~   63 (251)
                      +...++.++|.+.++++|+++|+...                          +.+.+||+|+.++++++|..|.++|+++
T Consensus        66 ~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~  145 (700)
T PTZ00216         66 YYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTK  145 (700)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCC
Confidence            34568999999999999999999752                          2467999999999999999999999999


Q ss_pred             CCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-------CCCeeeec
Q psy4550          64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-------SVPKVKLE  136 (251)
Q Consensus        64 g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~  136 (251)
                      ||+|+++++|+++|+++++||+++|++++|+++..+++++.+++++++++++|++.+..+.+...       ....+...
T Consensus       146 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~  225 (700)
T PTZ00216        146 GSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLD  225 (700)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999987654433211       11112111


Q ss_pred             c-------------hhhhhhhhhh-hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-----
Q psy4550         137 N-------------DFLSKMISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-----  197 (251)
Q Consensus       137 ~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----  197 (251)
                      .             .+.+...... ............++++++|+|||||||.||||++||+|+.+++......+     
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~  305 (700)
T PTZ00216        226 SLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIG  305 (700)
T ss_pred             CCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccC
Confidence            1             0111111100 00001112334678999999999999999999999999998887766544     


Q ss_pred             CCCCCChhhhhHHHHH--H---HHHhhhcCccEEEecCccccCchHHHh-------hhhccccC
Q psy4550         198 PYDEDDREACNVFFVW--E---MLRPLTQGIPMYVISDEVIYDPPRLTS-------GWVRLPLN  249 (251)
Q Consensus       198 ~~~~~~~~~~~~~~~~--~---~~~~l~~G~~~v~~~~~~~~~~~~~~~-------~i~~~~vt  249 (251)
                      .+.++|++++++|+.|  +   ....+..|+++++.      ++..+++       .++++++|
T Consensus       306 ~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~l~~~~pT  363 (700)
T PTZ00216        306 PPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG------SPRTLTDTFARPHGDLTEFRPV  363 (700)
T ss_pred             CCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC------CHHHhhhhhccccchHHHcCCc
Confidence            2467888888776543  2   23346777776653      2333333       56667765

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.3e-32  Score=235.12  Aligned_cols=229  Identities=22%  Similarity=0.321  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC
Q psy4550          15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL   94 (251)
Q Consensus        15 l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i   94 (251)
                      +.++|...++++|+++++.+ .++++||+||.+++.++|++|++.|+.+|++|+++++|+.+++++++||+.+|++++|+
T Consensus         2 ~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   80 (515)
T TIGR03098         2 LHHLLEDAAARLPDATALVH-HDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI   80 (515)
T ss_pred             HHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence            67889999999999999985 66789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----C-eeeecch-----------hhhhhhhhhhcccCCCCCC
Q psy4550          95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----P-KVKLEND-----------FLSKMISENEKLHNVDFPQ  157 (251)
Q Consensus        95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  157 (251)
                      ++..+.+++..+++.+++++++++++..+.+.....     . .+.....           .+........   ......
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  157 (515)
T TIGR03098        81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGD---ADPPHP  157 (515)
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccc---ccccCC
Confidence            999999999999999999999998776554322111     1 1111110           0001110000   012223


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCcc
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEV  232 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~  232 (251)
                      ...+++++++|||||||.||+|.+||+++...+......+++..+|++++++++.     ..++.++..|+++++.+.  
T Consensus       158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~--  235 (515)
T TIGR03098       158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDY--  235 (515)
T ss_pred             CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCC--
Confidence            4557899999999999999999999999999988888888899999998766543     357889999999999886  


Q ss_pred             ccCchHHHhhhhccccCC
Q psy4550         233 IYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       233 ~~~~~~~~~~i~~~~vt~  250 (251)
                       +++..+++.++++++|.
T Consensus       236 -~~~~~~~~~i~~~~~t~  252 (515)
T TIGR03098       236 -LLPRDVLKALEKHGITG  252 (515)
T ss_pred             -CCHHHHHHHHHHcCCce
Confidence             89999999999999874

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-32  Score=238.12  Aligned_cols=233  Identities=24%  Similarity=0.351  Sum_probs=184.9

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.++++.+|+++|+.+ .++.+||.||.+++.++|.+|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~-~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  111 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIF-YGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV  111 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence            5799999999999999999975 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeecc--h-----------------------hhhhh
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLEN--D-----------------------FLSKM  143 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~--~-----------------------~~~~~  143 (251)
                      |++|..+.+++.++++.++++++++++...+.+.+..    ...+....  .                       +.+..
T Consensus       112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (567)
T PRK06178        112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLL  191 (567)
T ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHH
Confidence            9999999999999999999999999987765544321    11111100  0                       00000


Q ss_pred             hhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCCChhhhhHHHHH------HHH
Q psy4550         144 ISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDREACNVFFVW------EML  216 (251)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~  216 (251)
                      ................++++++++|||||||.||+|++||+++......... .....++|+++.++++++      +++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  271 (567)
T PRK06178        192 PALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLL  271 (567)
T ss_pred             HHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHH
Confidence            0000000111223355789999999999999999999999999877654433 356778888877665432      467


Q ss_pred             HhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .++..|+++++.+.   +++..+++.++++++|
T Consensus       272 ~~l~~G~~~~l~~~---~~~~~~~~~i~~~~~t  301 (567)
T PRK06178        272 FPLFSGATLVLLAR---WDAVAFMAAVERYRVT  301 (567)
T ss_pred             HHHHcCceEEEeCC---CCHHHHHHHHHHhCCe
Confidence            78999999999987   8999999999999987

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=8.8e-33  Score=281.56  Aligned_cols=235  Identities=23%  Similarity=0.364  Sum_probs=195.2

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .+...+++++|.++++++|+++|+.+ .+..+||+||.++++++|+.|.++|+++|++|+|+++++++++++++|++++|
T Consensus      3716 ~~~~~~~~~~~~~~~~~~p~~~Av~~-~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG 3794 (4334)
T PRK05691       3716 YPLEQSYVRLFEAQVAAHPQRIAASC-LDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAG 3794 (4334)
T ss_pred             CccccCHHHHHHHHHHhCCCceEEEc-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhC
Confidence            34556899999999999999999985 56679999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecchhhhhhhhhhhcccCCCCCCCCCC
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLENDFLSKMISENEKLHNVDFPQVGLD  161 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      +.++|++|..+.+++.+++++++++++++++...+......       .+.+......    . ..............++
T Consensus      3795 ~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 3869 (4334)
T PRK05691       3795 AGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV----Q-AGEVASHNPGIYSGPD 3869 (4334)
T ss_pred             cEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc----c-cccccccCCCCCCCCC
Confidence            99999999999999999999999999999987544322110       1111111110    0 0000011222345678


Q ss_pred             CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCc
Q psy4550         162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDP  236 (251)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~  236 (251)
                      +++||+|||||||+||||+++|+++.+.+......++++++|+++...+     ..+.++.++..|+++++.+.....+|
T Consensus      3870 ~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~ 3949 (4334)
T PRK05691       3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDP 3949 (4334)
T ss_pred             ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence            9999999999999999999999999999999999999999999977553     35678999999999999998777899


Q ss_pred             hHHHhhhhccccC
Q psy4550         237 PRLTSGWVRLPLN  249 (251)
Q Consensus       237 ~~~~~~i~~~~vt  249 (251)
                      ..+++.+++++||
T Consensus      3950 ~~l~~~~~~~~vt 3962 (4334)
T PRK05691       3950 QGLLAHVQAQGIT 3962 (4334)
T ss_pred             HHHHHHHHHcCCe
Confidence            9999999999997

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=4.1e-33  Score=235.53  Aligned_cols=227  Identities=29%  Similarity=0.442  Sum_probs=171.0

Q ss_pred             HHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC
Q psy4550          19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY   98 (251)
Q Consensus        19 l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~   98 (251)
                      |+++++++|+++|+++.+++.+||+|+.+++.++|..|+++|+++||+|+++++|+++++++++||+++|++++|++|..
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~   80 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL   80 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence            67899999999999853778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCccEEEE----ccchhhhhhcc-C---CC--eeeecchhhh---hhhhhhhcccCCCCCC-CCCCCeE
Q psy4550          99 PPALLESVLDDAKPSIVIT----KGEYMDRLERT-S---VP--KVKLENDFLS---KMISENEKLHNVDFPQ-VGLDDIA  164 (251)
Q Consensus        99 ~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~-~---~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~  164 (251)
                      +.+++.++++.+++++||+    +......+... .   ..  .+.+......   .+........ .. .. ..+++++
T Consensus        81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  158 (417)
T PF00501_consen   81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDE-PQ-SPEDSPDDPA  158 (417)
T ss_dssp             SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHC-SH-STTHTTTSEE
T ss_pred             ccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccc-cc-cCCCCcccee
Confidence            9999999999999999997    22221212111 1   11  1222211110   0110100000 00 00 0568999


Q ss_pred             EEEeccCCCCCCceEEeccHHHHHHHHHHH--HhCCCCCCChhhhhHHH-----H-HHHHHhhhcCccEEEecCccccCc
Q psy4550         165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRH--RAYPYDEDDREACNVFF-----V-WEMLRPLTQGIPMYVISDEVIYDP  236 (251)
Q Consensus       165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~G~~~v~~~~~~~~~~  236 (251)
                      +++|||||||.||+|.++|+++.+.+....  ..++++  |++++.+|+     . ..++.++..|+++++++....+++
T Consensus       159 ~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  236 (417)
T PF00501_consen  159 FILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDP  236 (417)
T ss_dssp             EEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHH
T ss_pred             EeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999877754  333333  566654433     3 678999999999999997323346


Q ss_pred             hHHHhhhhccccC
Q psy4550         237 PRLTSGWVRLPLN  249 (251)
Q Consensus       237 ~~~~~~i~~~~vt  249 (251)
                      ..+++.++++++|
T Consensus       237 ~~~~~~i~~~~~t  249 (417)
T PF00501_consen  237 ESLLELISRYKPT  249 (417)
T ss_dssp             HHHHHHHHHHTES
T ss_pred             ccchhcccccccc
Confidence            8899999999987

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-32  Score=234.59  Aligned_cols=234  Identities=22%  Similarity=0.238  Sum_probs=188.8

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|...++++|+++|+++ .++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~   88 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVF-GDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH   88 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            45899999999999999999985 66889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec---------chhhhhhhhhhhcccCCCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE---------NDFLSKMISENEKLHNVDFPQV  158 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  158 (251)
                      +|+++..+.+++.++++.+++++++++++..+.+.+..    .......         ..+...................
T Consensus        89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (523)
T PRK08316         89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVEL  168 (523)
T ss_pred             EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCccCC
Confidence            99999999999999999999999999988765543210    0000000         0011000000000011123345


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEV  232 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~  232 (251)
                      .++++++++|||||||.||+|.+||+++..........+++.++++++..+|+++      .++.++..|+++++.+.  
T Consensus       169 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~--  246 (523)
T PRK08316        169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA--  246 (523)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC--
Confidence            6789999999999999999999999999998888888889999999887665432      24556889999999887  


Q ss_pred             ccCchHHHhhhhccccC
Q psy4550         233 IYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       233 ~~~~~~~~~~i~~~~vt  249 (251)
                       .++..+++.++++++|
T Consensus       247 -~~~~~~~~~i~~~~~t  262 (523)
T PRK08316        247 -PDPELILRTIEAERIT  262 (523)
T ss_pred             -CCHHHHHHHHHHhCCe
Confidence             7999999999999987

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=4.7e-32  Score=235.62  Aligned_cols=231  Identities=21%  Similarity=0.257  Sum_probs=186.9

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|.++++++|+++|+++ +++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIIC-GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            45789999999999999999985 67789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhhcc--CCCeeeecch------hhhhhhhhhhcccCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLERT--SVPKVKLEND------FLSKMISENEKLHNVDF  155 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~  155 (251)
                      +++++..+.+++.++++.++++.+++++....        .+...  ....+.....      .......   .......
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  177 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLES---PAEPVKF  177 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhC---cCccccC
Confidence            99999999999999999999999999865321        11110  1111111110      1100100   0011122


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEe
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVI  228 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~  228 (251)
                      ....++++++++|||||||.||+|++||+++..++......+.++.+|++++.+|++|       +++.++..|+++++.
T Consensus       178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~  257 (527)
T TIGR02275       178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA  257 (527)
T ss_pred             CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence            3456789999999999999999999999999999888888888999999987665433       467889999999998


Q ss_pred             cCccccCchHHHhhhhccccC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      +.   +++..+++.++++++|
T Consensus       258 ~~---~~~~~~~~~i~~~~~t  275 (527)
T TIGR02275       258 PD---PSPTDCFPLIERHKVT  275 (527)
T ss_pred             CC---CCHHHHHHHHHHhCCe
Confidence            76   8999999999999987

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-32  Score=240.63  Aligned_cols=234  Identities=21%  Similarity=0.274  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          15 LHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        15 l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ..+.|.++++++|+++|+++.+     .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus        69 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga  148 (637)
T PRK00174         69 SYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGA  148 (637)
T ss_pred             HHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence            3567778888899999998422     24799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhh----cc-CCCeeee-cc------------hhhhh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLE----RT-SVPKVKL-EN------------DFLSK  142 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~-~~~~~~~-~~------------~~~~~  142 (251)
                      +++|++|..+.+++.++++.++++++|+++....         .+.    .. ....+.. ..            .++..
T Consensus       149 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (637)
T PRK00174        149 VHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHE  228 (637)
T ss_pred             EEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHH
Confidence            9999999999999999999999999999865421         111    00 1111111 10            00111


Q ss_pred             hhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH------HHHH
Q psy4550         143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF------VWEM  215 (251)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~  215 (251)
                      ....  ...........++++++|+|||||||.||||+++|++++.... .....+++.++|++++..+.      .+.+
T Consensus       229 ~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  306 (637)
T PRK00174        229 LVAG--ASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIV  306 (637)
T ss_pred             HHhh--cCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHH
Confidence            1111  1111122345668999999999999999999999999875543 34455788888988765432      2457


Q ss_pred             HHhhhcCccEEEecCc-cccCchHHHhhhhccccCC
Q psy4550         216 LRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       216 ~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.++..|+++++.+.. ..+++..+++.|++++||.
T Consensus       307 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~  342 (637)
T PRK00174        307 YGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTI  342 (637)
T ss_pred             HHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeE
Confidence            8899999999997642 2358999999999999973

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-32  Score=243.40  Aligned_cols=225  Identities=19%  Similarity=0.223  Sum_probs=179.4

Q ss_pred             hHHHHHHHHHHh--CCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          14 ALHYMFRNQAKR--TPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        14 ~l~~~l~~~~~~--~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ++.++|.+.+++  +|+++|+++  ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~--~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~   82 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYA--ADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA   82 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEe--cCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            688889888876  799999974  3479999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG  171 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  171 (251)
                      +|++|..+.+++.++++.++++++|+++...+.+....  .... ...   ... .............++++++++||||
T Consensus        83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~a~il~TSG  155 (705)
T PRK06060         83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR--VAEA-AEL---MSE-AARVAPGGYEPMGGDALAYATYTSG  155 (705)
T ss_pred             EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc--cchh-hhh---hhh-ccccCCCCCCCCCCCCeEEEEECCC
Confidence            99999999999999999999999999877655443211  0000 000   000 0000001122345688999999999


Q ss_pred             CCCCCceEEeccHHHHHHHHHHH-HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         172 TTGKPKGIVCPHRGAVHAYKWRH-RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       172 tTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      |||.||||+++|+++...+.... ..+++.++|++++..++      ...++.++..|+++++.+.  .+++..+++.++
T Consensus       156 STG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~i~  233 (705)
T PRK06060        156 TTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA--PVTPEAAAILSA  233 (705)
T ss_pred             CCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC--CCCHHHHHHHHH
Confidence            99999999999999988776553 46788888888765433      2346788999999999885  378999999999


Q ss_pred             ccccC
Q psy4550         245 RLPLN  249 (251)
Q Consensus       245 ~~~vt  249 (251)
                      ++++|
T Consensus       234 ~~~~t  238 (705)
T PRK06060        234 RFGPS  238 (705)
T ss_pred             hcCCe
Confidence            99987

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-32  Score=243.21  Aligned_cols=242  Identities=20%  Similarity=0.239  Sum_probs=179.6

Q ss_pred             CCCCCCCcCchhhhHHHHHHHHHHhCCCceEEEecC------C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Q psy4550           1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME   72 (251)
Q Consensus         1 m~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~------~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~   72 (251)
                      |++......+...++.+++.++++++|+++|+++.+      +  +.+||+||.+++.++|++|.+. +++||+|+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~  100 (612)
T PRK12476         22 LDADGNIALPPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAP  100 (612)
T ss_pred             ccccccccCCccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECC
Confidence            344444455566789999999999999999997521      2  4799999999999999999987 899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCeEeeC-CCCCC--HHHHHHHHhhcCccEEEEccchhhhhhcc----C---CCeeeecchhhhh
Q psy4550          73 RCLEWTISYIAIHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDRLERT----S---VPKVKLENDFLSK  142 (251)
Q Consensus        73 ~~~~~~~~~~a~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~---~~~~~~~~~~~~~  142 (251)
                      |+++++++++||+++|++++|+ ++..+  .+++.+++++++++++|++++..+.+...    .   ...+.......  
T Consensus       101 n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  178 (612)
T PRK12476        101 QGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP--  178 (612)
T ss_pred             CChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccc--
Confidence            9999999999999999999999 56665  78999999999999999987765543221    0   11111111110  


Q ss_pred             hhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-CCCCChhhhhHHHHH-----HHH
Q psy4550         143 MISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-YDEDDREACNVFFVW-----EML  216 (251)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~  216 (251)
                        ..  ...........++++++|+|||||||.||||+++|+++..++......++ +.+++++++++|++|     .++
T Consensus       179 --~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~  254 (612)
T PRK12476        179 --DS--AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG  254 (612)
T ss_pred             --cc--ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHH
Confidence              00  00011122345689999999999999999999999999988777777777 788888888776543     234


Q ss_pred             HhhhcCccEEEecC-ccccCchHHHhhhh--ccccC
Q psy4550         217 RPLTQGIPMYVISD-EVIYDPPRLTSGWV--RLPLN  249 (251)
Q Consensus       217 ~~l~~G~~~v~~~~-~~~~~~~~~~~~i~--~~~vt  249 (251)
                      .+++.|++.++..+ ...++|..|++.++  ++++|
T Consensus       255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t  290 (612)
T PRK12476        255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGR  290 (612)
T ss_pred             HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCe
Confidence            44455655555543 22248999999995  46554

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-32  Score=233.96  Aligned_cols=233  Identities=25%  Similarity=0.327  Sum_probs=190.4

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ...++.++|.+.++.+|+++|+.+ .++.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~   82 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYF-DGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV   82 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEe-CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            456899999999999999999985 5667999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCeee-ecc-----------hhhhhhhhhhhcccCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKVK-LEN-----------DFLSKMISENEKLHNV  153 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~-~~~-----------~~~~~~~~~~~~~~~~  153 (251)
                      ++|+++..+.+++.++++.+++++++++.+..+.+.+..     ...+. ...           .+.+....   .....
T Consensus        83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  159 (521)
T PRK06187         83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAA---ASDTF  159 (521)
T ss_pred             EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhc---CCccC
Confidence            999999999999999999999999999988766544321     11111 111           11111111   11112


Q ss_pred             CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEe
Q psy4550         154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVI  228 (251)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~  228 (251)
                      ......++++++++|||||||.||+|.+||+++..........+++.++|++++..+.+     ...+.++..|++++++
T Consensus       160 ~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~  239 (521)
T PRK06187        160 DFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIP  239 (521)
T ss_pred             CCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEec
Confidence            23345668899999999999999999999999999888888889999999987655432     2345589999999998


Q ss_pred             cCccccCchHHHhhhhccccCC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.   +++..+++.++++++|.
T Consensus       240 ~~---~~~~~~~~~l~~~~~t~  258 (521)
T PRK06187        240 RR---FDPENLLDLIETERVTF  258 (521)
T ss_pred             CC---CCHHHHHHHHHHhCCeE
Confidence            87   69999999999999873

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.9e-32  Score=240.13  Aligned_cols=234  Identities=25%  Similarity=0.312  Sum_probs=180.6

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEecC--------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI   79 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~--------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~   79 (251)
                      ..+...++.++|.+.++.+|+++|+++.+        .+.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        16 ~~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~   94 (631)
T PRK07769         16 RFPPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLI   94 (631)
T ss_pred             cccccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHH
Confidence            34455689999999999999999997521        25799999999999999999987 8999999999999999999


Q ss_pred             HHHHHHHHCCeEeeC-CCCCC--HHHHHHHHhhcCccEEEEccchhhhhhcc----C---CCeeeecchhhhhhhhhhhc
Q psy4550          80 SYIAIHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDRLERT----S---VPKVKLENDFLSKMISENEK  149 (251)
Q Consensus        80 ~~~a~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~  149 (251)
                      +++||+++|++++|+ ++..+  .+++.++++.++++++|++++..+.+...    .   ...+...+.....   ..  
T Consensus        95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--  169 (631)
T PRK07769         95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE---VG--  169 (631)
T ss_pred             HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc---cc--
Confidence            999999999999999 45443  68899999999999999988765443221    0   0111111110000   00  


Q ss_pred             ccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCcc
Q psy4550         150 LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIP  224 (251)
Q Consensus       150 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~  224 (251)
                       .........++++++|+|||||||.||||++||+++..++......+++..++++++++|++|     .++.+++.|++
T Consensus       170 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~  248 (631)
T PRK07769        170 -ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHY  248 (631)
T ss_pred             -cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCe
Confidence             001122346789999999999999999999999999998888888889999999887665532     34667788999


Q ss_pred             EEEecC-ccccCchHHHhhhhcccc
Q psy4550         225 MYVISD-EVIYDPPRLTSGWVRLPL  248 (251)
Q Consensus       225 ~v~~~~-~~~~~~~~~~~~i~~~~v  248 (251)
                      +++.++ ....+|..+++.++++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~i~~~~~  273 (631)
T PRK07769        249 ITFMSPAAFVRRPGRWIRELARKPG  273 (631)
T ss_pred             EEEEChHHHHhCHHHHHHHHHhhcc
Confidence            988864 112389999999998875

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.2e-31  Score=234.60  Aligned_cols=237  Identities=23%  Similarity=0.306  Sum_probs=186.0

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ...++.++|.+.++++|+++|+.+. +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~   93 (559)
T PRK08315         14 LEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGA   93 (559)
T ss_pred             hhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCe
Confidence            4458999999999999999999764 456799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhccC------------------C-Ceeeecc------hh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLERTS------------------V-PKVKLEN------DF  139 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~------------------~-~~~~~~~------~~  139 (251)
                      +++|++|..+.+++..+++.++++++++++....     .+.+..                  . ..+....      ..
T Consensus        94 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (559)
T PRK08315         94 ILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLN  173 (559)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCccccc
Confidence            9999999999999999999999999999875421     111000                  0 0111110      00


Q ss_pred             hhhhhhhh----hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH----
Q psy4550         140 LSKMISEN----EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF----  211 (251)
Q Consensus       140 ~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----  211 (251)
                      +.......    ............++++++++|||||||.||+|.+||+++..++......+++.++|+++...++    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  253 (559)
T PRK08315        174 FDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCF  253 (559)
T ss_pred             HHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHH
Confidence            01111000    0000011223456789999999999999999999999999999988888999999988765433    


Q ss_pred             --HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         212 --VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 --~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                        ...++.++..|+++++...  .++|..+++.++++++|
T Consensus       254 g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~l~~~~~t  291 (559)
T PRK08315        254 GMVLGNLACVTHGATMVYPGE--GFDPLATLAAVEEERCT  291 (559)
T ss_pred             HHHHHHHHHHhccceEEEecC--CCCHHHHHHHHHHcCCe
Confidence              2356889999999996554  38999999999999987

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.1e-31  Score=249.00  Aligned_cols=236  Identities=15%  Similarity=0.129  Sum_probs=182.4

Q ss_pred             CCcCchhhhHHHHHHHHHHhCCCceEEEec--CC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550           6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDH--DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY   81 (251)
Q Consensus         6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~--~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~   81 (251)
                      ++..+...++.++|.+.++++|+++|+...  .+  +.+||+|+.+++.++|.+|.++|+++||+|+++++|+++|+++.
T Consensus       420 ~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        420 YNPLAGVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             CCCcccCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            455666779999999999999999999632  23  57999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeeeecchh------------------h
Q psy4550          82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDF------------------L  140 (251)
Q Consensus        82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~------------------~  140 (251)
                      +||+.+|++.+|+++  +.+++.+++++++++++|++.+..+++....   .+.++..+..                  +
T Consensus       500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~  577 (1452)
T PTZ00297        500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPY  577 (1452)
T ss_pred             HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeH
Confidence            999999999999975  4678999999999999999987766654321   2222221100                  1


Q ss_pred             hhhhhhhhcccCCCCCCCCCCCeEEEEe---ccCCCCCCceEEeccHHHHHHHHHHHHhC---CCCCCChhhhhHHHHH-
Q psy4550         141 SKMISENEKLHNVDFPQVGLDDIAYIVY---SSGTTGKPKGIVCPHRGAVHAYKWRHRAY---PYDEDDREACNVFFVW-  213 (251)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  213 (251)
                      ..+................++|++.|+|   ||||||.||||++||+|+++++.......   ...++|++++.+|++| 
T Consensus       578 ~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI  657 (1452)
T PTZ00297        578 EFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAML  657 (1452)
T ss_pred             HHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHH
Confidence            1111111100111122346788999986   99999999999999999999988876532   3567899888777654 


Q ss_pred             ----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         214 ----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       214 ----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                          ..+.++..|+++.+      +++..+++.|+++++|
T Consensus       658 ~er~~~~~~l~~G~~I~~------~d~~~lledL~~~rPT  691 (1452)
T PTZ00297        658 FNRVFVLGLFAHGSAVAT------VDAAHLQRAFVKFQPT  691 (1452)
T ss_pred             HHHHHHHHHHHcCCEEEe------CCHHHHHHHHHHHCCE
Confidence                24667889988752      6789999999999998

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.6e-31  Score=230.99  Aligned_cols=229  Identities=23%  Similarity=0.322  Sum_probs=187.8

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ++.+.|.+.++.+|+++|+. ..++.+||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~-~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~   79 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYR-YQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIP   79 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEE-cCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeC
Confidence            46788999999999999997 57789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT  173 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  173 (251)
                      +++.++.+++.++++..+++.++++++.......  ...+.+.  ..........  .........+++.++++||||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~il~TSGTT  153 (502)
T TIGR01734        80 VDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--TQIITLS--ALEQAETSGG--PVSFDHAVKGDDNYYIIYTSGST  153 (502)
T ss_pred             CCCcChHHHHHHHHHhcCCCEEEecccccccccC--CceEEch--HhhhhhhhcC--CccccccCCCCCeEEEEECCCCC
Confidence            9999999999999999999999998776443321  1112111  1111111110  11112334678899999999999


Q ss_pred             CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550         174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL  248 (251)
Q Consensus       174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v  248 (251)
                      |.||+|.++|+++...+......++...++++++.+|+     ...++.++..|+++++.++....++..+++.++++++
T Consensus       154 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~  233 (502)
T TIGR01734       154 GNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGL  233 (502)
T ss_pred             CCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCC
Confidence            99999999999999999888888899889988776544     3457789999999999987555789999999999988


Q ss_pred             C
Q psy4550         249 N  249 (251)
Q Consensus       249 t  249 (251)
                      |
T Consensus       234 ~  234 (502)
T TIGR01734       234 N  234 (502)
T ss_pred             e
Confidence            6

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.3e-32  Score=275.89  Aligned_cols=233  Identities=27%  Similarity=0.481  Sum_probs=194.3

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +...++.++|.++++++|+++|+.+ +++.+||+||.++++++|+.|+++|+++|++|+++++++++++++++|++++|+
T Consensus      1128 ~~~~~l~~~~~~~a~~~p~~~Al~~-~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~ 1206 (4334)
T PRK05691       1128 PAQAWLPELLNEQARQTPERIALVW-DGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGG 1206 (4334)
T ss_pred             CccCCHHHHHHHHHHhCCCCeEEEE-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            3456899999999999999999985 667899999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-CCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-VPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY  168 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  168 (251)
                      +++|++|..+.+++.+++++++++++++++...+.+.... ...+......   ....   ..........++++++++|
T Consensus      1207 ~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~a~ii~ 1280 (4334)
T PRK05691       1207 AYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLH---LDSW---PSQAPGLHLHGDNLAYVIY 1280 (4334)
T ss_pred             EEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeecccc---cccc---CCCCCCCCCCCCCeEEEEE
Confidence            9999999999999999999999999999987655443221 1111111100   0000   0011222346789999999


Q ss_pred             ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550         169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGW  243 (251)
Q Consensus       169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i  243 (251)
                      ||||||.||||+++|+++.+.+......+++.++|++++..++     .+.++.++..|+++++.+....+++..+++.|
T Consensus      1281 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i 1360 (4334)
T PRK05691       1281 TSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELV 1360 (4334)
T ss_pred             cCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence            9999999999999999999999998999999999999875543     35689999999999999866678999999999


Q ss_pred             hccccC
Q psy4550         244 VRLPLN  249 (251)
Q Consensus       244 ~~~~vt  249 (251)
                      ++++||
T Consensus      1361 ~~~~vt 1366 (4334)
T PRK05691       1361 QQYGVT 1366 (4334)
T ss_pred             HHcCCe
Confidence            999997

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-31  Score=237.17  Aligned_cols=235  Identities=19%  Similarity=0.255  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          15 LHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        15 l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      ..++|.++++.+|+++|+++.     +.+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus        55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga  134 (629)
T PRK10524         55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA  134 (629)
T ss_pred             HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            477788888889999999852     235799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchh---------hhhhc-------cCCCeeeecchh------------hh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYM---------DRLER-------TSVPKVKLENDF------------LS  141 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~-------~~~~~~~~~~~~------------~~  141 (251)
                      +++|++|..+.+++.+++++++++++|+++...         +.+.+       .....+......            ..
T Consensus       135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  214 (629)
T PRK10524        135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA  214 (629)
T ss_pred             EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence            999999999999999999999999999976421         11110       011111111100            00


Q ss_pred             hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHH-HHHHHHhCCCCCCChhhhhHHH------HHH
Q psy4550         142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA-YKWRHRAYPYDEDDREACNVFF------VWE  214 (251)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~  214 (251)
                      ...... ...........++++++++|||||||.||||+++|.++... .......+++.++|++++..+.      .+.
T Consensus       215 ~~~~~~-~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  293 (629)
T PRK10524        215 TLRAQH-LGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYI  293 (629)
T ss_pred             HHHhcC-CCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHH
Confidence            000000 00011112245689999999999999999999999997644 3444556788888988765432      356


Q ss_pred             HHHhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550         215 MLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       215 ~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++.++..|+++++... ....++..+++.|+++++|.
T Consensus       294 ~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~  330 (629)
T PRK10524        294 VYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNR  330 (629)
T ss_pred             HHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceE
Confidence            7889999999998774 22467899999999999973

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.2e-31  Score=230.19  Aligned_cols=228  Identities=24%  Similarity=0.331  Sum_probs=183.6

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.+++.+.+ .+|+++++.+.+++.+||.||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v   81 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL   81 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence            47889999999 99999999866788999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCC-eeeecchhhhhh-hhhhhcccCCCCCCCCCCCeEEE
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVP-KVKLENDFLSKM-ISENEKLHNVDFPQVGLDDIAYI  166 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i  166 (251)
                      |+++..+.+++..+++.++++++++++...+.+...    ... .+.........+ ................+++++++
T Consensus        82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  161 (504)
T PRK07514         82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAI  161 (504)
T ss_pred             ECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcCcccCcccCCCCCeEEE
Confidence            999999999999999999999999998766544322    111 111111100000 00011111122334567899999


Q ss_pred             EeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCchHHH
Q psy4550         167 VYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLT  240 (251)
Q Consensus       167 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~  240 (251)
                      +|||||||.||+|.++|+++...+......+++.++|++++..+++      ..++.++..|+++++.+.   +++..++
T Consensus       162 ~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~  238 (504)
T PRK07514        162 LYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK---FDPDAVL  238 (504)
T ss_pred             EECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC---CCHHHHH
Confidence            9999999999999999999999998888888999999988755432      235678999999999987   8899999


Q ss_pred             hhhh
Q psy4550         241 SGWV  244 (251)
Q Consensus       241 ~~i~  244 (251)
                      +.+.
T Consensus       239 ~~i~  242 (504)
T PRK07514        239 ALMP  242 (504)
T ss_pred             HHHH
Confidence            8884

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-31  Score=231.96  Aligned_cols=234  Identities=22%  Similarity=0.205  Sum_probs=186.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|.+.++++|+++|+++ +++.+||.||.+++.+++..|.+.|+++|++|+++++|++++++.++||+++|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVL-GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEE-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            44899999999999999999986 66789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccc-hhhhhhcc--CC---Ceee-ecc--hhhhhhhhhhhcccCCCCCCCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGE-YMDRLERT--SV---PKVK-LEN--DFLSKMISENEKLHNVDFPQVGLDD  162 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~--~~---~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  162 (251)
                      +|++|..+.+++.++++.++++.+++++. ..+.....  ..   ..+. ...  ......................+++
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD  169 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCcccccccCCCCC
Confidence            99999999999999999999999999876 32222111  01   1111 110  0000000000000011112234566


Q ss_pred             eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH----HHHHhhhcCccEEEecCccccCchH
Q psy4550         163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW----EMLRPLTQGIPMYVISDEVIYDPPR  238 (251)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~G~~~v~~~~~~~~~~~~  238 (251)
                      +++++|||||||.||+|.++|.++...+......+++..++++++.+++.+    .++.++..|+++++.+.   ++|..
T Consensus       170 ~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~~---~~~~~  246 (524)
T PRK06188        170 IAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAK---FDPAE  246 (524)
T ss_pred             eEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcCC---CCHHH
Confidence            999999999999999999999999999998889999999999987664432    35778899999999987   89999


Q ss_pred             HHhhhhccccC
Q psy4550         239 LTSGWVRLPLN  249 (251)
Q Consensus       239 ~~~~i~~~~vt  249 (251)
                      +++.++++++|
T Consensus       247 ~~~~i~~~~~t  257 (524)
T PRK06188        247 VLRAIEEQRIT  257 (524)
T ss_pred             HHHHHHHhCCE
Confidence            99999999987

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.1e-31  Score=238.31  Aligned_cols=225  Identities=17%  Similarity=0.184  Sum_probs=166.8

Q ss_pred             hCCCceEEEecC--C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550          25 RTPDKIAVVDHD--G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP  100 (251)
Q Consensus        25 ~~~~~~a~~~~~--~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~  100 (251)
                      ..++++|++..+  +  +.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|+++.++.
T Consensus        96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~  175 (652)
T TIGR01217        96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA  175 (652)
T ss_pred             cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence            357888887522  2  579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccEEEEccchh---------hhhhc----cC-CC-eeeecc--------------hhhhhhhhhhhccc
Q psy4550         101 ALLESVLDDAKPSIVITKGEYM---------DRLER----TS-VP-KVKLEN--------------DFLSKMISENEKLH  151 (251)
Q Consensus       101 ~~l~~~l~~~~~~~vi~~~~~~---------~~~~~----~~-~~-~~~~~~--------------~~~~~~~~~~~~~~  151 (251)
                      +++.+++++++++++|+++...         +.+..    .. .. .+....              ..+....... ...
T Consensus       176 ~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  254 (652)
T TIGR01217       176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAA-QAA  254 (652)
T ss_pred             HHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcc-cCC
Confidence            9999999999999999987532         11111    00 11 111110              0001110000 000


Q ss_pred             CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHHHH----HHHHhhhcCccEE
Q psy4550         152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFFVW----EMLRPLTQGIPMY  226 (251)
Q Consensus       152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~G~~~v  226 (251)
                      .........+++++|+|||||||.||||+++|.+++. ........+++.++|++++..++.+    .++.++..|++++
T Consensus       255 ~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~G~t~v  334 (652)
T TIGR01217       255 ELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLVSGLATGATLV  334 (652)
T ss_pred             CCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhHHHHHHHhcCcEEE
Confidence            1112234568999999999999999999999999654 4455556678899999876543321    3567899999999


Q ss_pred             EecCc-cccCchHHHhhhhccccCC
Q psy4550         227 VISDE-VIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       227 ~~~~~-~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.+.. ...++..+++.+++++||.
T Consensus       335 l~~g~~~~~~~~~~~~~i~~~~vt~  359 (652)
T TIGR01217       335 LYDGSPGFPATNVLWDIAERTGATL  359 (652)
T ss_pred             EECCCCCCCCchHHHHHHHHhCCeE
Confidence            98632 1237899999999999973

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-31  Score=233.59  Aligned_cols=234  Identities=21%  Similarity=0.226  Sum_probs=185.9

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      .-+++.+.+...++.+|+++|+. .+++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~-~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~   93 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALR-FLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI   93 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEE-eCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            34689999999999999999998 46778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCeee-ecc-------hhhhhhhhhhhcccCCCCCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKVK-LEN-------DFLSKMISENEKLHNVDFPQ  157 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~  157 (251)
                      ++|+++..+.+++.++++.++++++++++...+......     ...+. ..+       .+.+....   .........
T Consensus        94 ~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  170 (542)
T PRK07786         94 AVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAE---AGPAHAPVD  170 (542)
T ss_pred             EEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhc---cCCCCCCCC
Confidence            999999999999999999999999999887655432211     11111 111       01111111   111112233


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC-CCCChhhhhHHH-----HHHHHHhhhcCccEEEecCc
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY-DEDDREACNVFF-----VWEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~  231 (251)
                      ...+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|+     ...++.++..|+++++.+..
T Consensus       171 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  250 (542)
T PRK07786        171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLG  250 (542)
T ss_pred             CCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCC
Confidence            455789999999999999999999999999888877777776 566776654443     23578889999999987632


Q ss_pred             cccCchHHHhhhhccccC
Q psy4550         232 VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt  249 (251)
                       .++|..+++.|+++++|
T Consensus       251 -~~~~~~~~~~i~~~~~t  267 (542)
T PRK07786        251 -AFDPGQLLDVLEAEKVT  267 (542)
T ss_pred             -CcCHHHHHHHHHHcCCe
Confidence             37999999999999987

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-31  Score=238.24  Aligned_cols=224  Identities=19%  Similarity=0.212  Sum_probs=169.0

Q ss_pred             hCCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550          25 RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP  100 (251)
Q Consensus        25 ~~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~  100 (251)
                      .+|+++|++..+    .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|++|.++.
T Consensus        96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~  175 (655)
T PRK03584         96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV  175 (655)
T ss_pred             CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence            579999998532    2579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccEEEEccchhh---------hhhc----c-CCC-eeeecch-------------hhhhhhhhhhcccC
Q psy4550         101 ALLESVLDDAKPSIVITKGEYMD---------RLER----T-SVP-KVKLEND-------------FLSKMISENEKLHN  152 (251)
Q Consensus       101 ~~l~~~l~~~~~~~vi~~~~~~~---------~~~~----~-~~~-~~~~~~~-------------~~~~~~~~~~~~~~  152 (251)
                      +++.++++.++++++|+++....         .+.+    . ... .+.....             .+...... .....
T Consensus       176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  254 (655)
T PRK03584        176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAP-AEAAE  254 (655)
T ss_pred             HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhc-cccCC
Confidence            99999999999999999875321         1110    0 011 1111100             00011000 00111


Q ss_pred             CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH-HHHHHHHhCCCCCCChhhhhHHH----HHHHHHhhhcCccEEE
Q psy4550         153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH-AYKWRHRAYPYDEDDREACNVFF----VWEMLRPLTQGIPMYV  227 (251)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~G~~~v~  227 (251)
                      ........+++++|+|||||||.||||+++|++++. ........+++.++|++++..+.    ...++.++..|+++++
T Consensus       255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~L~~G~t~vl  334 (655)
T PRK03584        255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVL  334 (655)
T ss_pred             CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHHHHHHHHHcCCEEEE
Confidence            122345668999999999999999999999998764 45556667888999998764422    1235678999999999


Q ss_pred             ecCc-cccCchHHHhhhhccccC
Q psy4550         228 ISDE-VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       228 ~~~~-~~~~~~~~~~~i~~~~vt  249 (251)
                      .+.. ..+++..+++.|++++||
T Consensus       335 ~~~~~~~~~~~~~~~~i~~~~vt  357 (655)
T PRK03584        335 YDGSPFYPDPNVLWDLAAEEGVT  357 (655)
T ss_pred             eCCCCCCCCHHHHHHHHHHHCCE
Confidence            8642 236899999999999987

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.5e-31  Score=231.65  Aligned_cols=237  Identities=18%  Similarity=0.265  Sum_probs=186.6

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      ...++.+.|.+.++.+|+++|++..     .++.+||+||.+++.++|.+|+++|+++|++|+++++|+++++++++||+
T Consensus        20 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~   99 (538)
T TIGR03208        20 RDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACA   99 (538)
T ss_pred             ccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            3458999999999999999999742     24689999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhc----c-CC-Ceeeecc----hhhhhhhhhh-hc
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLER----T-SV-PKVKLEN----DFLSKMISEN-EK  149 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~----~-~~-~~~~~~~----~~~~~~~~~~-~~  149 (251)
                      ++|++++|++|..+.+++.++++.++++++++++....     ....    . .. ..+....    .+........ ..
T Consensus       100 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (538)
T TIGR03208       100 RIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDD  179 (538)
T ss_pred             hcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhcccccc
Confidence            99999999999999999999999999999999876421     1110    0 00 1111111    1111111000 00


Q ss_pred             ccC----CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhh
Q psy4550         150 LHN----VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPL  219 (251)
Q Consensus       150 ~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l  219 (251)
                      ...    .......++++++++|||||||.||||+++|+++...+......+++..+|++++.+++.      .+++.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l  259 (538)
T TIGR03208       180 TPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPL  259 (538)
T ss_pred             ccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHH
Confidence            000    111235678999999999999999999999999999988888888898899888755432      3467889


Q ss_pred             hcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         220 TQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       220 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ..|+++++.+.   +++..+++.++++++|.
T Consensus       260 ~~g~~~~~~~~---~~~~~~~~~l~~~~vt~  287 (538)
T TIGR03208       260 ILNATAVLQDI---WNPARAAELIRETGVTF  287 (538)
T ss_pred             HcCCEEEecCc---cCHHHHHHHHHHhCCeE
Confidence            99999999876   89999999999999873

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-31  Score=231.27  Aligned_cols=235  Identities=23%  Similarity=0.299  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .++.++|.+.++++|+++|++.. .++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            47999999999999999999753 45789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhh-----hhhcc---------------CCC---eee-ecc-------hhh
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD-----RLERT---------------SVP---KVK-LEN-------DFL  140 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~---------------~~~---~~~-~~~-------~~~  140 (251)
                      +++++..+.+++.++++.++++++++++....     .+...               ..+   .+. ...       .+.
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWH  177 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccchH
Confidence            99999999999999999999999999764321     11000               000   000 000       000


Q ss_pred             hhhhhhhh---cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------
Q psy4550         141 SKMISENE---KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------  211 (251)
Q Consensus       141 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  211 (251)
                      ........   ...........++++++++|||||||.||+|.++|+++..++......+++..+|++++..++      
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~  257 (558)
T PRK12583        178 ELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGM  257 (558)
T ss_pred             hhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhH
Confidence            00000000   000011123456789999999999999999999999999998888888899999988775543      


Q ss_pred             HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         212 VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ...++.++..|++++++..  .+++..+++.++++++|
T Consensus       258 ~~~~~~~l~~g~~v~~~~~--~~~~~~~~~~i~~~~~t  293 (558)
T PRK12583        258 VLANLGCMTVGACLVYPNE--AFDPLATLQAVEEERCT  293 (558)
T ss_pred             HHHHHHHHhcCceEEeecC--CCCHHHHHHHHHHcCCe
Confidence            2346778999999987664  38999999999999987

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-31  Score=230.01  Aligned_cols=234  Identities=21%  Similarity=0.271  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ++.++|.+.++++|+++|+.+ +++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~-~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~   82 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVC-GDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN   82 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence            789999999999999999985 7788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-----C-eeeecchhhh-------hhhhhhhcccCCCCCCCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-----P-KVKLENDFLS-------KMISENEKLHNVDFPQVGL  160 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  160 (251)
                      +++..+.+++.++++.++++++++++...+.+.+...     . .+........       ...................
T Consensus        83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (533)
T PRK07798         83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERS  162 (533)
T ss_pred             cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCCCC
Confidence            9999999999999999999999999876555443211     1 1111111100       0000000000011111223


Q ss_pred             CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC---------CC------CCCChhhhhHHH-----HHHHHHhhh
Q psy4550         161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY---------PY------DEDDREACNVFF-----VWEMLRPLT  220 (251)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------~~------~~~~~~~~~~~~-----~~~~~~~l~  220 (251)
                      .+.++++|||||||.||+|+++|+++..........+         ++      ..+++++..+++     .+.++.++.
T Consensus       163 ~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~  242 (533)
T PRK07798        163 PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALF  242 (533)
T ss_pred             CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHh
Confidence            3456899999999999999999999986554322211         11      455666654433     335788999


Q ss_pred             cCccEEEecCccccCchHHHhhhhccccC
Q psy4550         221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .|+++++.+.. .+++..+++.++++++|
T Consensus       243 ~G~~~~~~~~~-~~~~~~~~~~i~~~~~t  270 (533)
T PRK07798        243 SGQTVVLLPDV-RFDADEVWRTIEREKVN  270 (533)
T ss_pred             cCceEEEecCC-CcCHHHHHHHHHHhCCe
Confidence            99999999932 48999999999999987

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-31  Score=232.18  Aligned_cols=233  Identities=20%  Similarity=0.265  Sum_probs=178.8

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.+++.+.++++|+++|+.+ +++.+||.||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~-~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  110 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDF-FGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV  110 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEe
Confidence            4899999999999999999985 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc-------------------------------
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN-------------------------------  137 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~-------------------------------  137 (251)
                      |++|..+.+++.+++++++++++|+++.......+.    ....+...+                               
T Consensus       111 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (573)
T PRK05605        111 EHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPA  190 (573)
T ss_pred             ecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccCC
Confidence            999999999999999999999999987654433211    111111000                               


Q ss_pred             ----hhhhhhhhhhhcc-cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC-C-CCCChhhhhHH
Q psy4550         138 ----DFLSKMISENEKL-HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP-Y-DEDDREACNVF  210 (251)
Q Consensus       138 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~  210 (251)
                          .+........... .........++++++++|||||||.||+|.+||+++...+......+. + ..++++++..|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p  270 (573)
T PRK05605        191 PGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALP  270 (573)
T ss_pred             CcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecC
Confidence                0000000000000 001122345689999999999999999999999999887765444332 2 34567766544


Q ss_pred             HH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         211 FV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       211 ~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++      ..++.++..|+++++.+.   +++..+++.|+++++|
T Consensus       271 ~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~l~~~~~t  312 (573)
T PRK05605        271 MFHAYGLTLCLTLAVSIGGELVLLPA---PDIDLILDAMKKHPPT  312 (573)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEEeCC---CCHHHHHHHHHHhCCE
Confidence            32      235667899999999887   8999999999999987

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.5e-31  Score=249.63  Aligned_cols=238  Identities=22%  Similarity=0.280  Sum_probs=190.7

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +...++.+.+.+.++++|+++|+++.+++++||+|+.++++++|+.|++. +++||+|+++++|+++++++++||+++|+
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-~~~g~~V~i~~~n~~~~~~~~la~~~~G~  690 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGK  690 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHHh-CCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence            44568999999999999999999876678999999999999999999874 89999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-------CCeeeecchhhh------hhhhhhhc--cc---
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-------VPKVKLENDFLS------KMISENEK--LH---  151 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~--~~---  151 (251)
                      +++|++|..+.+++.++++++++++++++++..+.+.+..       ...+...++...      ........  .+   
T Consensus       691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (1146)
T PRK08633        691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARL  770 (1146)
T ss_pred             EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHH
Confidence            9999999999999999999999999999987766654210       111111111000      00000000  00   


Q ss_pred             --CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCc
Q psy4550         152 --NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGI  223 (251)
Q Consensus       152 --~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~  223 (251)
                        ........++++++++|||||||.||||.+||+++..++......+++.++|++++.+|++|      .++.++..|+
T Consensus       771 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~  850 (1146)
T PRK08633        771 LKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI  850 (1146)
T ss_pred             HHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCC
Confidence              00013456789999999999999999999999999999988888899999999987665533      3578899999


Q ss_pred             cEEEecCccccCchHHHhhhhccccCC
Q psy4550         224 PMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       224 ~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++++.++  .+++..+++.++++++|.
T Consensus       851 ~~v~~~~--~~~~~~~~~~i~~~~~t~  875 (1146)
T PRK08633        851 KVVYHPD--PTDALGIAKLVAKHRATI  875 (1146)
T ss_pred             EEEEeCC--CCCHHHHHHHHHHcCCeE
Confidence            9999875  489999999999999973

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3.5e-31  Score=230.57  Aligned_cols=229  Identities=20%  Similarity=0.232  Sum_probs=183.0

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      +.++.++|.+.++  |+++|+++ +++.+||+|+.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVIC-GERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            4578999988886  99999986 67789999999999999999999999999999999999999999999999999988


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccch--------hhhhhcc--CCCeeeecc-----hhhhhhhhhhhcccCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEY--------MDRLERT--SVPKVKLEN-----DFLSKMISENEKLHNVDFP  156 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~--------~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  156 (251)
                      +++.+.....++..+++.++++.++++++.        .+.+...  ....+....     .+..... ...  ......
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~  177 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAIN-HPA--EDFTAT  177 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhh-Ccc--cccccC
Confidence            887777788899999999999999997642        1112111  111111111     1111111 111  111123


Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEec
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVIS  229 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~~  229 (251)
                      ...++++++++|||||||.||||++||+++...+......+++.++|++++.+|+.|       +++.++..|+++++.+
T Consensus       178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~  257 (536)
T PRK10946        178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP  257 (536)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence            456789999999999999999999999999999998888899999999988765432       5688899999999988


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .   +++..+++.++++++|
T Consensus       258 ~---~~~~~~~~~l~~~~~t  274 (536)
T PRK10946        258 D---PSATLCFPLIEKHQVN  274 (536)
T ss_pred             C---CCHHHHHHHHHHhCCc
Confidence            7   8999999999999987

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.4e-31  Score=249.52  Aligned_cols=237  Identities=20%  Similarity=0.238  Sum_probs=184.1

Q ss_pred             chhhhHHHHHHHHHHhCC-CceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          10 DAEGALHYMFRNQAKRTP-DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~-~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      +...++.+.+.+.++++| ++.++.+.+++++||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G  706 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG  706 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence            345677888888888886 5677765467889999999999999999975 99999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhh------cc--CCCeeeecchh-----hhhhhhh-hhcccCCC
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE------RT--SVPKVKLENDF-----LSKMISE-NEKLHNVD  154 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~------~~--~~~~~~~~~~~-----~~~~~~~-~~~~~~~~  154 (251)
                      ++++|++|..+.+++.++++++++++++++++..+...      +.  ....+..++..     ....... ....+...
T Consensus       707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1140)
T PRK06814        707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVY  786 (1140)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCccc
Confidence            99999999999999999999999999999876544321      00  11122221100     0000000 00001111


Q ss_pred             CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEe
Q psy4550         155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVI  228 (251)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~  228 (251)
                      .....++++++++|||||||.||||++||+++..++......+++.++|++++.+|++      .+++.++..|+++++.
T Consensus       787 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~  866 (1140)
T PRK06814        787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLY  866 (1140)
T ss_pred             cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEe
Confidence            1235678999999999999999999999999999998888889999999998766543      3467789999999998


Q ss_pred             cCccccCchHHHhhhhccccC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++  .+++..+.+.++++++|
T Consensus       867 ~~--~~~~~~~~~~i~~~~~t  885 (1140)
T PRK06814        867 PS--PLHYRIIPELIYDTNAT  885 (1140)
T ss_pred             cC--cccHHHHHHHHHhcCCE
Confidence            75  36778888999999987

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=7.3e-31  Score=230.42  Aligned_cols=234  Identities=18%  Similarity=0.229  Sum_probs=183.1

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecC--CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHD--GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~--~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      .++.++|.+.++.+|+++|+.+.+  ++.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~   89 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA   89 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence            489999999999999999987522  4689999999999999999987 7999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCee-eecchh----------------hhhhhhhh
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKV-KLENDF----------------LSKMISEN  147 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~-~~~~~~----------------~~~~~~~~  147 (251)
                      +++|++|..+.+++.++++.++++++|++++..+.+.+.     ....+ ......                +..+... 
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  168 (576)
T PRK05620         90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDG-  168 (576)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhc-
Confidence            999999999999999999999999999998765544321     11111 111000                0011100 


Q ss_pred             hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHH--HHhCCCCCCChhhhhHHHHH-----HHHHhhh
Q psy4550         148 EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR--HRAYPYDEDDREACNVFFVW-----EMLRPLT  220 (251)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~l~  220 (251)
                       ...........++++++++|||||||.||||+++|+++.......  ...+++..++++++.+|++|     .++.++.
T Consensus       169 -~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~  247 (576)
T PRK05620        169 -RSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFM  247 (576)
T ss_pred             -CCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHh
Confidence             011112234567899999999999999999999999986554432  34577888999887665543     3477889


Q ss_pred             cCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         221 QGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .|+++++.+.  .+++..+++.|+++++|.
T Consensus       248 ~g~~~~~~~~--~~~~~~~~~~i~~~~~t~  275 (576)
T PRK05620        248 SGTPLVFPGP--DLSAPTLAKIIATAMPRV  275 (576)
T ss_pred             cCceEEecCC--CCCHHHHHHHHHHhcCce
Confidence            9999998875  379999999999998873

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.98  E-value=1.1e-30  Score=225.82  Aligned_cols=231  Identities=23%  Similarity=0.323  Sum_probs=187.9

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      +++.++|.+.++.+|+++++.+ +++.+||+||.+.+.++|.+|.+.|+++|++|+++++|+.++++.++||+++|++++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~-~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~   80 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDY-LGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYI   80 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEe-CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence            4688999999999999999974 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT  172 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  172 (251)
                      |+++..+.+++.++++..++++++++++.....  .....+.. .+......   ............+++.++++|||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGT  154 (503)
T PRK04813         81 PVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--LGIPVITL-DELKDIFA---TGNPYDFDHAVKGDDNYYIIFTSGT  154 (503)
T ss_pred             cCCCCChHHHHHHHHHhcCCCEEEecccccccc--cCCcEEeh-HHhhhhhh---ccccccccccCCCCCcEEEEECCCC
Confidence            999999999999999999999999987652111  11111111 11111100   0111112234566889999999999


Q ss_pred             CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550         173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP  247 (251)
Q Consensus       173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~  247 (251)
                      ||.||+|.++|+++..........+++..+++++...++     ...++.++..|+++++.+....+++..+++.+++++
T Consensus       155 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~  234 (503)
T PRK04813        155 TGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLP  234 (503)
T ss_pred             CCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence            999999999999999998888888899899988876544     334678899999999998755679999999999998


Q ss_pred             cCC
Q psy4550         248 LNG  250 (251)
Q Consensus       248 vt~  250 (251)
                      +|.
T Consensus       235 ~t~  237 (503)
T PRK04813        235 INV  237 (503)
T ss_pred             CeE
Confidence            863

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=5.8e-31  Score=228.25  Aligned_cols=227  Identities=16%  Similarity=0.222  Sum_probs=178.1

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.+.|.+.++.+|+++|+.+ +++.+||+|+.+++.++|++|++.|+++||+|+++++|+++++.+++||+.+|+++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~-~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIID-DDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEe-CCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            35788889999999999999986 56689999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG  171 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  171 (251)
                      +|+++..+.+++.++++.++++.++++++..+.+................     ...   ....+...++.++++||||
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~p~~~~~~~~il~TSG  184 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG-----AEE---SGGRPAVAAPGRIVLLTSG  184 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh-----hhc---CCCCCCCCCCCcEEEECCC
Confidence            99999999999999999999999999987766554332222222111100     000   0011123456679999999


Q ss_pred             CCCCCceEEeccHHHHH--HHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         172 TTGKPKGIVCPHRGAVH--AYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       172 tTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      |||.||+|+++|.....  ........+++..+|+++..+|+     ...++.++..|+++++...   +++..+++.++
T Consensus       185 TTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~  261 (516)
T PRK13383        185 TTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRH---FDAEAALAQAS  261 (516)
T ss_pred             CCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCC---CCHHHHHHHHH
Confidence            99999999999984322  22223345678888888765543     2335678899999998876   89999999999


Q ss_pred             ccccCC
Q psy4550         245 RLPLNG  250 (251)
Q Consensus       245 ~~~vt~  250 (251)
                      ++++|.
T Consensus       262 ~~~~t~  267 (516)
T PRK13383        262 LHRADA  267 (516)
T ss_pred             HhCCcE
Confidence            999873

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=6.2e-31  Score=229.15  Aligned_cols=233  Identities=16%  Similarity=0.197  Sum_probs=180.2

Q ss_pred             hhHHHHHHHHHHhCCCceEEEec-C--CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDH-D--GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~-~--~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      .++.++|.+.++++|++.++.+. +  .+.+||.||.++++++|++|.+.|+++||+|+++++|++++++.++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            47899999999999999888642 2  36799999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCe-eeecch---------h--hhhhhhhhhcccC
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPK-VKLEND---------F--LSKMISENEKLHN  152 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~-~~~~~~---------~--~~~~~~~~~~~~~  152 (251)
                      +++|++|..+.+++.++++.++++++++++++.+.+....     ... +.....         .  ...+....  ...
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~  167 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ--DGD  167 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc--CCC
Confidence            9999999999999999999999999999987654433210     000 000000         0  00000000  011


Q ss_pred             CCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH--HHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccE
Q psy4550         153 VDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK--WRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPM  225 (251)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~  225 (251)
                      .......++++++++|||||||.||+|++||+++.....  .....+++.++|++++..|+++.     ++.++..|+++
T Consensus       168 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~  247 (539)
T PRK07008        168 YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKL  247 (539)
T ss_pred             cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceE
Confidence            122345668899999999999999999999999875432  33346778888998876655432     36678899999


Q ss_pred             EEecCccccCchHHHhhhhccccC
Q psy4550         226 YVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       226 v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++.++  .+++..+++.++++++|
T Consensus       248 ~~~~~--~~~~~~~~~~l~~~~vt  269 (539)
T PRK07008        248 VLPGP--DLDGKSLYELIEAERVT  269 (539)
T ss_pred             EEecC--CcCHHHHHHHHHHcCCE
Confidence            99865  38999999999999997

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.98  E-value=2e-31  Score=231.51  Aligned_cols=227  Identities=14%  Similarity=0.168  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHhCCCceEEEecCC---CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          15 LHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        15 l~~~l~~~~~~~~~~~a~~~~~~---~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      +.+.|.+.++++|+++|+++.++   +.+||+||.++++++|..|.++  ++||+|+++++|+++++++++||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            78899999999999999986542   6799999999999999999998  799999999999999999999999999986


Q ss_pred             eeCCCC-------CCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeE
Q psy4550          92 LPLETS-------YPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIA  164 (251)
Q Consensus        92 v~i~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (251)
                      ++.+..       ...+++.++++.++++++|+++...+.+...... +... +...    ..............+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~-~~~~----~~~~~~~~~~~~~~~~d~a  155 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTVH-DLAT----AAHTNRSASLTPPDSGGPA  155 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-cccc-cccc----cccccccccCCCCCCCCeE
Confidence            543211       1235566778999999999987765444322111 1110 0000    0000000111234678999


Q ss_pred             EEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC-CCChhhhhHHHHH-----HHHHhhhcCccEEEecCc-cccCch
Q psy4550         165 YIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD-EDDREACNVFFVW-----EMLRPLTQGIPMYVISDE-VIYDPP  237 (251)
Q Consensus       165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~-~~~~~~  237 (251)
                      +|+|||||||.||||+++|+++...+......+++. .+|++++++|++|     .++.++..|+++++.+.. ...+|.
T Consensus       156 ~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~  235 (525)
T PRK05851        156 VLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPF  235 (525)
T ss_pred             EEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHH
Confidence            999999999999999999999999998888888988 8999988776533     467899999999997731 112688


Q ss_pred             HHHhhhhccccC
Q psy4550         238 RLTSGWVRLPLN  249 (251)
Q Consensus       238 ~~~~~i~~~~vt  249 (251)
                      .+++.++++++|
T Consensus       236 ~~~~~i~~~~~t  247 (525)
T PRK05851        236 RWLSWLSDSRAT  247 (525)
T ss_pred             HHHHHHHHhCCe
Confidence            999999999887

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.98  E-value=3.2e-31  Score=232.74  Aligned_cols=238  Identities=21%  Similarity=0.258  Sum_probs=183.4

Q ss_pred             CcCchhhhHHHHHHHHHHhCCCceEEEecCC---CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550           7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA   83 (251)
Q Consensus         7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~---~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a   83 (251)
                      ...+...++.++|...++++|+..++ +.++   +.+||+||++++.++|.+|+++|+++||+|+++++|+++++++++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA   93 (579)
T PRK09192         15 RRYADFPTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFA   93 (579)
T ss_pred             ccccchhhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHH
Confidence            34567789999999999998876655 5443   5699999999999999999999999999999999999999999999


Q ss_pred             HHHHCCeEeeCCCCCC-------HHHHHHHHhhcCccEEEEccchhhhhhccC--CCeeeecchhhhhhhhhhhcccCCC
Q psy4550          84 IHKAGGGYLPLETSYP-------PALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLENDFLSKMISENEKLHNVD  154 (251)
Q Consensus        84 ~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  154 (251)
                      |+++|++++|+++..+       .+++.++++.++++++++++...+.+....  ...... ..+..... ...  ....
T Consensus        94 ~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~  169 (579)
T PRK09192         94 CQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV-LSHAWFKA-LPE--ADVA  169 (579)
T ss_pred             HHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce-eehhhhcc-cCC--Cccc
Confidence            9999999999986432       689999999999999999987665544321  111110 01111110 000  0112


Q ss_pred             CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCCChhhhhHHHHH------HHHHhhhcCccEEE
Q psy4550         155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDREACNVFFVW------EMLRPLTQGIPMYV  227 (251)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~  227 (251)
                      .....++++++++|||||||.||||.++|+++...+..... .+++.++|++++++|++|      .++.++..|+++++
T Consensus       170 ~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~  249 (579)
T PRK09192        170 LPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY  249 (579)
T ss_pred             cCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEe
Confidence            23356689999999999999999999999999998887777 788999999887665432      35667889999877


Q ss_pred             ecC-ccccCchHHHhhhhccccC
Q psy4550         228 ISD-EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       228 ~~~-~~~~~~~~~~~~i~~~~vt  249 (251)
                      .+. ....+|..+++.++++++|
T Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~t  272 (579)
T PRK09192        250 LPTRDFARRPLQWLDLISRNRGT  272 (579)
T ss_pred             eCHHHHHHCHHHHHHHHHhcCcE
Confidence            763 2223799999999999886

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.98  E-value=2.9e-31  Score=233.06  Aligned_cols=229  Identities=25%  Similarity=0.364  Sum_probs=176.1

Q ss_pred             hHHHHHHHHHHhCCCceEEEecC--------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~--------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      ++.++|.+++..+|+++|+++.+        .+.+||+||.+++.++|++|.+.| .+||+|+++++|+++++++++||+
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~   80 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL   80 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence            57889999999999999998532        268999999999999999999999 689999999999999999999999


Q ss_pred             HHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhhhcc-------CCCeeeecchhhhhhhhhhhcccCCCC
Q psy4550          86 KAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLERT-------SVPKVKLENDFLSKMISENEKLHNVDF  155 (251)
Q Consensus        86 ~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (251)
                      ++|++++|+++   ..+.+++.++++++++++++++++..+.+...       ....+... +... .   ... .....
T Consensus        81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~-~~~~~  154 (578)
T PRK05850         81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEV-DLLD-L---DSP-RGSDA  154 (578)
T ss_pred             HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEee-cccc-c---ccC-Ccccc
Confidence            99999999997   45789999999999999999998766554321       01111110 0000 0   000 00112


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC-C-----CCCCChhhhhHHH------HHHHHHhhhcCc
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY-P-----YDEDDREACNVFF------VWEMLRPLTQGI  223 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~~~------~~~~~~~l~~G~  223 (251)
                      ....++++++++|||||||.||||+++|+++++++......+ .     ...++++++++|+      ..+++.+++.|+
T Consensus       155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~  234 (578)
T PRK05850        155 RPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGC  234 (578)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCC
Confidence            234568999999999999999999999999998876655432 2     3456777765543      345788999999


Q ss_pred             cEEEecCc-cccCchHHHhhhhccccC
Q psy4550         224 PMYVISDE-VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       224 ~~v~~~~~-~~~~~~~~~~~i~~~~vt  249 (251)
                      ++++.++. ...+|..|++.+++++++
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~i~~~~~~  261 (578)
T PRK05850        235 PAVLTSPVAFLQRPARWMQLLASNPHA  261 (578)
T ss_pred             cEEEeCHHHHHHCHHHHHHHHHHcCCe
Confidence            99998751 123799999999999876

>PLN02479 acetate-CoA ligase

Probab=99.98  E-value=1.7e-30  Score=227.64  Aligned_cols=238  Identities=16%  Similarity=0.142  Sum_probs=178.4

Q ss_pred             CCcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550           6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus         6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      .+..+...++++.+...++.+|+++|+++ ++..+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~   91 (567)
T PLN02479         13 NAANYTALTPLWFLERAAVVHPTRKSVVH-GSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVP   91 (567)
T ss_pred             ccccccccCHHHHHHHHHhhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence            33444445789999999999999999985 66789999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------------CCCee-eecc---------------
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------------SVPKV-KLEN---------------  137 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~-~~~~---------------  137 (251)
                      ++|++++|+++..+.+++.++++.+++++++++++..+...+.            ..+.+ ....               
T Consensus        92 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (567)
T PLN02479         92 MAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG  171 (567)
T ss_pred             hCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence            9999999999999999999999999999999988765432211            00111 1110               


Q ss_pred             --hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH-
Q psy4550         138 --DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE-  214 (251)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (251)
                        .+.+.+......  .........++.++++|||||||.||||++||+++..........+++..+++++..+++++. 
T Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~  249 (567)
T PLN02479        172 AIEYEKFLETGDPE--FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN  249 (567)
T ss_pred             cccHHHHHhccccc--cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence              000000000000  000112233466789999999999999999999988777666677888888888765554331 


Q ss_pred             -----HHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         215 -----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       215 -----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                           +...+..|.++ +...   +++..+++.++++++|.
T Consensus       250 ~~~~~~~~~~~~g~~~-~~~~---~~~~~~~~~l~~~~~t~  286 (567)
T PLN02479        250 GWCFTWTLAALCGTNI-CLRQ---VTAKAIYSAIANYGVTH  286 (567)
T ss_pred             hHHHHHHHHhhcCceE-eccC---CCHHHHHHHHHHcCCeE
Confidence                 22345555554 4455   89999999999999873

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=4.9e-30  Score=224.61  Aligned_cols=234  Identities=18%  Similarity=0.262  Sum_probs=177.4

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ..++.++|.+.++.+|+++|+++ +++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus        23 ~~~~~~~l~~~a~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~  101 (562)
T PRK05677         23 YPNIQAVLKQSCQRFADKPAFSN-LGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI  101 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            35899999999999999999985 66789999999999999999997 59999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--h--------------------------
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--D--------------------------  138 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~--------------------------  138 (251)
                      ++|++|..+.+++.++++.++++++|++++..+.+.+.    ....+...+  +                          
T Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK05677        102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL  181 (562)
T ss_pred             EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence            99999999999999999999999999987654433221    111111110  0                          


Q ss_pred             -----hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC--CCCC-ChhhhhHH
Q psy4550         139 -----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP--YDED-DREACNVF  210 (251)
Q Consensus       139 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~  210 (251)
                           +.+....  ............++++++++|||||||.||||+++|+++..++......++  +..+ +++++.++
T Consensus       182 ~~~~~~~~~~~~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p  259 (562)
T PRK05677        182 PQAVKFNDALAK--GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLP  259 (562)
T ss_pred             cccccHHHHHhc--CCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCc
Confidence                 0000000  000001122345689999999999999999999999999887765555443  3332 45454443


Q ss_pred             HH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         211 FV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       211 ~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++      ..++..+..|++.++.+.  .+++..+++.|+++++|.
T Consensus       260 l~h~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t~  303 (562)
T PRK05677        260 LYHIYAFTFHCMAMMLIGNHNILISN--PRDLPAMVKELGKWKFSG  303 (562)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEecC--cccHHHHHHHHHHcCceE
Confidence            32      345677888888777765  378999999999999874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.98  E-value=8.1e-31  Score=228.60  Aligned_cols=235  Identities=18%  Similarity=0.192  Sum_probs=180.8

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEe-cCC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVD-HDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~-~~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      ...++.++|.+.++++|+++++.. .++  +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~   87 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI   87 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence            345899999999999999999973 123  67999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecch-------------hhhhhhhhhh
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LEND-------------FLSKMISENE  148 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~-------------~~~~~~~~~~  148 (251)
                      |++++|++|..+.+++.++++.++++.++++.+..+.+.+.     ....+. ....             +......   
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  164 (542)
T PRK06018         88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAE---  164 (542)
T ss_pred             CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhcc---
Confidence            99999999999999999999999999999998765544321     111111 1100             0000000   


Q ss_pred             cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHH-H-HHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhc
Q psy4550         149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV-H-AYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQ  221 (251)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~  221 (251)
                      ...........++++++++|||||||.||+|.+||++.+ . ........+++..+|+++...++++     ..+.++..
T Consensus       165 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~  244 (542)
T PRK06018        165 ADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSM  244 (542)
T ss_pred             CCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhc
Confidence            000111233466789999999999999999999999743 2 2233445677888898877655433     24567889


Q ss_pred             CccEEEecCccccCchHHHhhhhccccCC
Q psy4550         222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      |+++++...  .+++..+++.++++++|.
T Consensus       245 g~~~v~~~~--~~~~~~~~~~l~~~~~t~  271 (542)
T PRK06018        245 GTKLVMPGA--KLDGASVYELLDTEKVTF  271 (542)
T ss_pred             CceEEccCc--CCCHHHHHHHHHhcCCce
Confidence            999988764  489999999999999873

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.2e-30  Score=225.20  Aligned_cols=233  Identities=20%  Similarity=0.281  Sum_probs=177.8

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+.+ +++.+||+||.+++.++|..|++.|+++|++|+++++|+++++++++||+++|++++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v   85 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVW-GDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWV   85 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEE-CCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEE
Confidence            4788999999999999999985 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CC-Ceeeecc-----hhhhhhhhhhhcccCCCCCCCCCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SV-PKVKLEN-----DFLSKMISENEKLHNVDFPQVGLD  161 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      |+++..+.+++.++++.++++.++++++..+.....     .. ..+....     .+...... .. ..........++
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~  163 (528)
T PRK07470         86 PTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR-HL-GARVANAAVDHD  163 (528)
T ss_pred             ecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc-CC-CCCCCcccCCCC
Confidence            999999999999999999999999998765443221     01 1111111     11111111 00 011122345678


Q ss_pred             CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hC-CCCCCChhhhhHHHHHH----HHHhhhcCccEEEecCccccC
Q psy4550         162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AY-PYDEDDREACNVFFVWE----MLRPLTQGIPMYVISDEVIYD  235 (251)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~----~~~~l~~G~~~v~~~~~~~~~  235 (251)
                      ++++++|||||||.||+|.++|+++...+..... .+ +....|+++..+++.|.    .+..+..|++.++.+. ..++
T Consensus       164 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~-~~~~  242 (528)
T PRK07470        164 DPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPS-ERFD  242 (528)
T ss_pred             CeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecc-cCcC
Confidence            9999999999999999999999999765543222 22 56677777765554332    2345677777776653 1479


Q ss_pred             chHHHhhhhccccC
Q psy4550         236 PPRLTSGWVRLPLN  249 (251)
Q Consensus       236 ~~~~~~~i~~~~vt  249 (251)
                      +..+++.|+++++|
T Consensus       243 ~~~~~~~i~~~~~t  256 (528)
T PRK07470        243 PAEVWALVERHRVT  256 (528)
T ss_pred             HHHHHHHHHhcCCe
Confidence            99999999999987

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.97  E-value=3.9e-30  Score=222.67  Aligned_cols=230  Identities=19%  Similarity=0.267  Sum_probs=180.3

Q ss_pred             HHHHHHHH-HHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          15 LHYMFRNQ-AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        15 l~~~l~~~-~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ..+++.+. ++.+|+++|+++ +++.+||.|+.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus         6 ~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~   84 (508)
T TIGR02262         6 AEDLLDRNVVEGRGGKTAFID-DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA   84 (508)
T ss_pred             HHHHHHHHHhcccCCceEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence            44555565 577999999985 6778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCee-eecc------hhhhhhhhhhhcccCCCCCCCCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKV-KLEN------DFLSKMISENEKLHNVDFPQVGLD  161 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      +++..+.+++.++++.++++++++++...+.+.+..     ...+ ....      .+.+...   ............++
T Consensus        85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  161 (508)
T TIGR02262        85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLA---TESEQFKPAATQAD  161 (508)
T ss_pred             ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhh---cCCCccCCCCCCCC
Confidence            999999999999999999999999887655443210     1111 1111      0111110   11111122344568


Q ss_pred             CeEEEEeccCCCCCCceEEeccHHHHHHHHH-HHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcccc
Q psy4550         162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-RHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIY  234 (251)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~  234 (251)
                      ++++++|||||||.||+|.++|+++...+.. ....++++++|+++..+++++      .++.++..|+++++.++  .+
T Consensus       162 ~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~--~~  239 (508)
T TIGR02262       162 DPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE--RP  239 (508)
T ss_pred             CcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC--CC
Confidence            9999999999999999999999999887765 456778899998877654432      35678889999999886  37


Q ss_pred             CchHHHhhhhccccCC
Q psy4550         235 DPPRLTSGWVRLPLNG  250 (251)
Q Consensus       235 ~~~~~~~~i~~~~vt~  250 (251)
                      ++..+++.|+++++|.
T Consensus       240 ~~~~~~~~i~~~~~t~  255 (508)
T TIGR02262       240 TPDAVFDRLRRHQPTI  255 (508)
T ss_pred             CHHHHHHHHHHHCCcE
Confidence            8999999999999873

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>KOG1256|consensus

Probab=99.97  E-value=9.2e-31  Score=222.44  Aligned_cols=237  Identities=22%  Similarity=0.212  Sum_probs=182.2

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecC-------CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY   81 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~-------~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~   81 (251)
                      .+...|+++.|.+.+..+++.+++-.-.       .+.+||+|..+++.+++..|+.+|+++++.|+|+..|++||+++.
T Consensus        71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~  150 (691)
T KOG1256|consen   71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE  150 (691)
T ss_pred             CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence            3467899999999999999999986411       246899999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc-cchhhhhhccC-------CCeeeecch---------------
Q psy4550          82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK-GEYMDRLERTS-------VPKVKLEND---------------  138 (251)
Q Consensus        82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~~~~~~~~---------------  138 (251)
                      .||...|.++||++.+.+++.+.++++.+.+++||++ ++..+.+.+..       ...++.-..               
T Consensus       151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~  230 (691)
T KOG1256|consen  151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE  230 (691)
T ss_pred             HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence            9999999999999999999999999999999999999 44444443321       111111110               


Q ss_pred             --hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH---HHHhC---CCCCCChhhhhHH
Q psy4550         139 --FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW---RHRAY---PYDEDDREACNVF  210 (251)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~---~~~~~~~~~~~~~  210 (251)
                        .++...............+..++|.+.|.|||||||.|||||+||+|+.+.+..   .....   ....+|++++.+|
T Consensus       231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP  310 (691)
T KOG1256|consen  231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP  310 (691)
T ss_pred             EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence              112222222211111225778999999999999999999999999999986542   22211   2234688888877


Q ss_pred             HHHH-----HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         211 FVWE-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       211 ~~~~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      +.|.     -...+..|+++.+...    |+..+.+.+++.++|
T Consensus       311 LAHi~er~~~~~~~~~G~~IgF~~g----D~~~l~~dlk~lkPT  350 (691)
T KOG1256|consen  311 LAHIFERVVELYTFYIGAKIGFARG----DILKLTDDLKELKPT  350 (691)
T ss_pred             HHHHHHHHHHHhHhhcccEEEEecC----ChHHHHHHHHHhCCc
Confidence            7542     2445588999999885    888888889998887

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.97  E-value=5.7e-30  Score=223.42  Aligned_cols=231  Identities=19%  Similarity=0.168  Sum_probs=177.5

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .+..+.|.+.++.+|+++|+.+ ++..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v   96 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIH-GDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN   96 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE-CCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence            4778899999999999999985 677899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCC-eeeecch--------------hhhhhhhhhhcccCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVP-KVKLEND--------------FLSKMISENEKLHNV  153 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~--------------~~~~~~~~~~~~~~~  153 (251)
                      |+++..+.+++.++++.++++.++++++..+.+.+.    ... .+.+...              +...... . .....
T Consensus        97 pl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  174 (545)
T PRK08162         97 TLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLAS-G-DPDFA  174 (545)
T ss_pred             ccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhcc-C-Ccccc
Confidence            999999999999999999999999998876654331    111 1111110              0000000 0 00001


Q ss_pred             CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccEEEe
Q psy4550         154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPMYVI  228 (251)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~v~~  228 (251)
                      .......++.++++|||||||.||||+++|+++...+......+++..++++++.+++++.     .+...+.|++.++.
T Consensus       175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~  254 (545)
T PRK08162        175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCL  254 (545)
T ss_pred             ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEe
Confidence            1112234578999999999999999999999987776666667778888888766554321     22233456566666


Q ss_pred             cCccccCchHHHhhhhccccC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ..   +++..+++.++++++|
T Consensus       255 ~~---~~~~~~~~~l~~~~~t  272 (545)
T PRK08162        255 RK---VDPKLIFDLIREHGVT  272 (545)
T ss_pred             CC---CCHHHHHHHHHHcCCe
Confidence            65   8999999999999997

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.97  E-value=4.1e-30  Score=221.48  Aligned_cols=217  Identities=22%  Similarity=0.360  Sum_probs=171.9

Q ss_pred             HHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550          21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP   99 (251)
Q Consensus        21 ~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~   99 (251)
                      .+++.+|+++|+.+. +++.+||+|+.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+
T Consensus         3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~   82 (488)
T PRK09088          3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS   82 (488)
T ss_pred             hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence            456789999999863 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceE
Q psy4550         100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI  179 (251)
Q Consensus       100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  179 (251)
                      .+++.++++.++++++++++......    ...+.. +.+....   ... .........++++++++|||||||.||+|
T Consensus        83 ~~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~~~-~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v  153 (488)
T PRK09088         83 ASELDALLQDAEPRLLLGDDAVAAGR----TDVEDL-AAFIASA---DAL-EPADTPSIPPERVSLILFTSGTSGQPKGV  153 (488)
T ss_pred             HHHHHHHHHhCCCCEEEEcchhhccc----ccccch-hhhhhhc---ccc-ccccCCCCCCCCceEEEeCCCCCCCCcEE
Confidence            99999999999999999987654311    001100 0111000   000 01112234567899999999999999999


Q ss_pred             EeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhhhc--cccC
Q psy4550         180 VCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR--LPLN  249 (251)
Q Consensus       180 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~--~~vt  249 (251)
                      .++|+++...+...........+|++++.+|+++      .++.++..|+++++.+.   +++..++..+.+  +++|
T Consensus       154 ~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~~~~~~~~t  228 (488)
T PRK09088        154 MLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG---FEPKRTLGRLGDPALGIT  228 (488)
T ss_pred             EEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC---CCHHHHHHHHHhhccCCc
Confidence            9999999988877777777888898887665433      35667889999998876   888999888864  5555

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=8.8e-30  Score=222.80  Aligned_cols=235  Identities=20%  Similarity=0.328  Sum_probs=175.0

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      +.++.++|.+.++++|+++|+++ .+..+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~i~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  100 (557)
T PRK07059         22 YPSLADLLEESFRQYADRPAFIC-MGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV  100 (557)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE-cCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence            35899999999999999999985 66789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hh--------------------------
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DF--------------------------  139 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~--------------------------  139 (251)
                      +|++|..+.+++.++++.++++++++++...+.+...    ....+....  ..                          
T Consensus       101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (557)
T PRK07059        101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG  180 (557)
T ss_pred             eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence            9999999999999999999999999987764433221    111110000  00                          


Q ss_pred             ---hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC----CC---CCChhhhhH
Q psy4550         140 ---LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP----YD---EDDREACNV  209 (251)
Q Consensus       140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~~~~~  209 (251)
                         ....... ............++++++|+|||||||.||+|+++|.+++.++........    ..   ....+++.+
T Consensus       181 ~~~~~~~~~~-~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (557)
T PRK07059        181 HVRFNDALAE-GARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL  259 (557)
T ss_pred             cccHHHHhhc-cCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeC
Confidence               0000000 000111223456789999999999999999999999999876654332221    11   122333333


Q ss_pred             HH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         210 FF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       210 ~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++      ....+.++..|++.++.+.  ..++..+++.++++++|.
T Consensus       260 pl~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~vt~  304 (557)
T PRK07059        260 PLYHIFALTVCGLLGMRTGGRNILIPN--PRDIPGFIKELKKYQVHI  304 (557)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEEecC--CcCHHHHHHHHHHhCCee
Confidence            22      2245667788888777775  368999999999999874

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.5e-29  Score=221.67  Aligned_cols=234  Identities=24%  Similarity=0.330  Sum_probs=175.4

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      +++.++|.+.++.+|+++|+++ +++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHF-LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV  102 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEe-cCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence            5899999999999999999985 678899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhh--------------------------
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFL--------------------------  140 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~--------------------------  140 (251)
                      |++|..+.+++.++++.++++.+++++.........    ....+....  ...                          
T Consensus       103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (563)
T PRK06710        103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESE  182 (563)
T ss_pred             ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccc
Confidence            999999999999999999999999987654332211    001110000  000                          


Q ss_pred             --hhhhhh-hhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH-hCCCCCC-ChhhhhHHHHH--
Q psy4550         141 --SKMISE-NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDED-DREACNVFFVW--  213 (251)
Q Consensus       141 --~~~~~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--  213 (251)
                        ...... .............+++.++++|||||||.||+|.++|+++..+...... .++...+ +++++++|+++  
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~  262 (563)
T PRK06710        183 TIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY  262 (563)
T ss_pred             hhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHH
Confidence              000000 0000000111123578999999999999999999999999865443332 2344443 45566554322  


Q ss_pred             ----HHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         214 ----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       214 ----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                          .++.++..|+++++.+.   +++..+++.|+++++|.
T Consensus       263 g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~  300 (563)
T PRK06710        263 GMTAVMNLSIMQGYKMVLIPK---FDMKMVFEAIKKHKVTL  300 (563)
T ss_pred             HHHHHHHHHHHcCCeEEEcCC---CCHHHHHHHHHHcCCeE
Confidence                24567889999999886   89999999999999873

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.1e-30  Score=206.88  Aligned_cols=235  Identities=19%  Similarity=0.232  Sum_probs=194.4

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .+++.++|.++++++|+++|++| +++.+||+||.+++.++|..|+++|+++||+|.+.++|..+|+++++|++++|..+
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d-~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P  105 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVID-GERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP  105 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEec-CcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence            46899999999999999999996 55669999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhc-cCCCeeeecchh----hhhhhhhhhcccCCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLER-TSVPKVKLENDF----LSKMISENEKLHNVDFPQ  157 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  157 (251)
                      |.--|.....++.++.+.++++..|.++....         .+.+ ...+.+.+..+-    ......-.......+..+
T Consensus       106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~~a~~  185 (542)
T COG1021         106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPP  185 (542)
T ss_pred             hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCCcCCC
Confidence            99989999999999999999999998765321         1111 122333322211    011111111122244566


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-------HHHHhhhcCccEEEecC
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-------EMLRPLTQGIPMYVISD  230 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~G~~~v~~~~  230 (251)
                      .+++++++...+-||||.||.+..||.....+++.-.+..+++...+++|.+|..|       +.+..++.|+++|+.++
T Consensus       186 ~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~  265 (542)
T COG1021         186 ADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPD  265 (542)
T ss_pred             CCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCC
Confidence            77889999999999999999999999999999998899999999999999876543       68999999999999998


Q ss_pred             ccccCchHHHhhhhccccCC
Q psy4550         231 EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt~  250 (251)
                         -+|+....+|++|+||.
T Consensus       266 ---psp~~~F~lIerh~Vt~  282 (542)
T COG1021         266 ---PSPELCFPLIERHGVTV  282 (542)
T ss_pred             ---CCHHHHHHHHHHhccce
Confidence               89999999999999984

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.97  E-value=2.2e-29  Score=219.51  Aligned_cols=234  Identities=20%  Similarity=0.268  Sum_probs=173.9

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      .+.++.++|.+.++.+|+++|+.+ +++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~   97 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEF-RDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGAR   97 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEE-CCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence            355899999999999999999974 6778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchh--hhhhc----cCCCe-eeecchhhhh----------------hhhh-
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYM--DRLER----TSVPK-VKLENDFLSK----------------MISE-  146 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~----~~~~~-~~~~~~~~~~----------------~~~~-  146 (251)
                      ++|++|..+.+++.++++.++++.+++++...  +...+    ..... +.........                .... 
T Consensus        98 ~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (541)
T TIGR03205        98 VVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFV  177 (541)
T ss_pred             EEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHH
Confidence            99999999999999999999999999976321  11110    00111 1111110000                0000 


Q ss_pred             hhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC------CCCCChhhhhHHHH------HH
Q psy4550         147 NEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP------YDEDDREACNVFFV------WE  214 (251)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~  214 (251)
                      .............+++.++++|||||||.||+|+++|+++....... ..++      ....+++++..+++      ..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~  256 (541)
T TIGR03205       178 KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVI  256 (541)
T ss_pred             hcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence            00000111233456899999999999999999999999987654322 2221      12235565544332      23


Q ss_pred             HHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         215 MLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       215 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++.++..|+++++...   +++..+++.|+++++|
T Consensus       257 ~~~~l~~g~~~~~~~~---~~~~~~~~~i~~~~~t  288 (541)
T TIGR03205       257 LLRSLRRGDLISLHQR---FDVAAVFRDIEEKRAT  288 (541)
T ss_pred             HHHHHhcCCEEEecCC---CCHHHHHHHHHHcCCe
Confidence            5778899999888765   8999999999999987

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.97  E-value=8.6e-30  Score=234.49  Aligned_cols=233  Identities=17%  Similarity=0.137  Sum_probs=175.6

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +...++.++|.+.++++|+++|+++ +++.+||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~-~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGa  522 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLF-DGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGA  522 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Confidence            4556899999999999999999985 677899999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecch---------hhhhh--hhhhhcccCC----C
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEND---------FLSKM--ISENEKLHNV----D  154 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~----~  154 (251)
                      +++|++|.   +++.++++.++++++|++++..+.+.......+.....         .....  ..........    .
T Consensus       523 v~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (994)
T PRK07868        523 VAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYR  599 (994)
T ss_pred             EEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccC
Confidence            99999984   68999999999999999987666554322222222110         00000  0000000000    0


Q ss_pred             CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHHH------HHHhhhcCccEEEe
Q psy4550         155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWE------MLRPLTQGIPMYVI  228 (251)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~G~~~v~~  228 (251)
                      .....++++++|+|| ||||.||++.++|.+...........+++..+|++++.+|++|.      ++.++..|+++++.
T Consensus       600 ~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~  678 (994)
T PRK07868        600 PNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS  678 (994)
T ss_pred             CCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEec
Confidence            111235889999998 57777888878887766555555667788999999887766442      33455566666666


Q ss_pred             cCccccCchHHHhhhhccccCC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.   +++..+++.|++|+||.
T Consensus       679 ~~---~~~~~~~~~I~~~~vT~  697 (994)
T PRK07868        679 RG---LDPDRFVQEVRQYGVTV  697 (994)
T ss_pred             CC---CCHHHHHHHHHHhCCcE
Confidence            65   89999999999999983

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=2.2e-29  Score=220.44  Aligned_cols=234  Identities=16%  Similarity=0.236  Sum_probs=172.9

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .++.+.|.+.++++|+++|+. .+++.+||.||.++++++|.+|.+. |+++||+|+++++|+++++++++||+++|+++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~-~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~  102 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFS-NLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV  102 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEe-cCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            589999999999999999997 4677899999999999999999985 99999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec--c----------------------------
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE--N----------------------------  137 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~--~----------------------------  137 (251)
                      +|++|..+.+++.++++.++++++++++...+......    ...+...  .                            
T Consensus       103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (562)
T PRK12492        103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLP  182 (562)
T ss_pred             eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCc
Confidence            99999999999999999999999999765433222110    0000000  0                            


Q ss_pred             --hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC---------CCCC-Chh
Q psy4550         138 --DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP---------YDED-DRE  205 (251)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~~-~~~  205 (251)
                        ..+....... ............+++++|+|||||||.||||+++|+++...+......++         +..+ +++
T Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (562)
T PRK12492        183 QAVPFKQALRQG-RGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM  261 (562)
T ss_pred             ccccHHHHHhcc-CCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence              0000000000 00001122345678999999999999999999999999877766555443         2222 344


Q ss_pred             hhhHHHH------HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         206 ACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       206 ~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++.+++.      ..++..+..|++.++...  .+++..+++.++++++|-
T Consensus       262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t~  310 (562)
T PRK12492        262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITN--PRDIPGFIKELGKWRFSA  310 (562)
T ss_pred             EEecchHHHHHHHHHHHHHhhcCceEEEecC--CcCHHHHHHHHHHhCCce
Confidence            4433322      234566788887777654  378999999999999873

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.97  E-value=2.8e-29  Score=219.72  Aligned_cols=233  Identities=21%  Similarity=0.353  Sum_probs=174.6

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .++.++|.+.++.+|+++|+++ .++.+||+||.+++.++|..|. +.|+++||+|+++++|+++++++++||+++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  103 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHS-FGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV  103 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEE-CCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            4789999999999999999985 6789999999999999999997 6899999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hh--------------------------
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DF--------------------------  139 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~--------------------------  139 (251)
                      +|++|..+.+++.++++.++++++++++.....+...    ....+....  ..                          
T Consensus       104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (560)
T PRK08751        104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN  183 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence            9999999999999999999999999987765443321    111111100  00                          


Q ss_pred             ----hhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC----CCCC-ChhhhhHH
Q psy4550         140 ----LSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP----YDED-DREACNVF  210 (251)
Q Consensus       140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~-~~~~~~~~  210 (251)
                          ........ ...........++++++++|||||||.||+|.++|.++...+......++    +..+ +++++.++
T Consensus       184 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (560)
T PRK08751        184 GAIRFREALALG-RKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALP  262 (560)
T ss_pred             ccccHHHHHhcc-CCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecC
Confidence                00000000 00001122345688999999999999999999999999888776655443    3333 34444333


Q ss_pred             HH--H----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         211 FV--W----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       211 ~~--~----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++  +    ..+.++..|++.++.+.  .+++..+++.++++++|
T Consensus       263 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~t  305 (560)
T PRK08751        263 LYHIFALTANGLVFMKIGGCNHLISN--PRDMPGFVKELKKTRFT  305 (560)
T ss_pred             hHHHHHHHHhhhhHhhccceEEEecC--cCCHHHHHHHHHhccee
Confidence            22  2    23555667777776664  37999999999999987

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.97  E-value=7.7e-30  Score=197.41  Aligned_cols=200  Identities=15%  Similarity=0.103  Sum_probs=150.8

Q ss_pred             HHHHHHhCCCceEEEec-C----CCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          19 FRNQAKRTPDKIAVVDH-D----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        19 l~~~~~~~~~~~a~~~~-~----~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      +...++.+|+++|++.. +    ++++||+|+.++++++|++|++ +|+++||+|+++++|+++++++++|++++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            46678899999999732 2    3469999999999999999998 7999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeee-----c--------chhhhhhhhhhhcccCCCCC-CC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL-----E--------NDFLSKMISENEKLHNVDFP-QV  158 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~-~~  158 (251)
                      |++             .+++++++++++..+..... ...+.+     .        ..+................. ..
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFAPYEPP  147 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCCCCCCCcccchhhhhhccCCCCCCCCCC
Confidence            995             77899999988876664321 111111     0        01000000011000111112 34


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCcc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEV  232 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~  232 (251)
                      .++|++.|+||||+         +|.++..+.    ...+++++|+++ .+|++|      +++.++..|+++++.++  
T Consensus       148 ~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r--  211 (227)
T TIGR03089       148 DATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH--  211 (227)
T ss_pred             CCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC--
Confidence            56899999999985         667766554    566789999999 876543      47899999999999987  


Q ss_pred             ccCchHHHhhhhccccC
Q psy4550         233 IYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       233 ~~~~~~~~~~i~~~~vt  249 (251)
                       |+|..+++.|++||||
T Consensus       212 -Fd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       212 -PDPARLDQIAETERVT  227 (227)
T ss_pred             -CCHHHHHHHHHhhcCC
Confidence             9999999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.8e-29  Score=220.31  Aligned_cols=228  Identities=16%  Similarity=0.199  Sum_probs=178.3

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      .++.+.|...+...|+.+++.+.+ ++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~   81 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASL   81 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccc
Confidence            468898999999999999997644 4679999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHH-------HHHHhhcCccEEEEccchhhhhhccC---CCeeeecchhhhhhhhhhhcccCCCCCCCCCC
Q psy4550          92 LPLETSYPPALL-------ESVLDDAKPSIVITKGEYMDRLERTS---VPKVKLENDFLSKMISENEKLHNVDFPQVGLD  161 (251)
Q Consensus        92 v~i~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      +++++..+.+++       .++++.++++.+++++...+......   ...+...     .+.....    .......++
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~----~~~~~~~~~  152 (545)
T PRK07768         82 TMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVA-----DLLAADP----IDPVETGED  152 (545)
T ss_pred             cccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehh-----hhcccCC----CCcCCCCCC
Confidence            999988776544       55677789999999876544332211   1111111     1111110    122344678


Q ss_pred             CeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC-ChhhhhHHHHH------HHHHhhhcCccEEEecC-ccc
Q psy4550         162 DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED-DREACNVFFVW------EMLRPLTQGIPMYVISD-EVI  233 (251)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~l~~G~~~v~~~~-~~~  233 (251)
                      ++++++|||||||.||+|+++|+++...+......+++..+ |++++++|+.+      .++.++..|+++++.+. ...
T Consensus       153 ~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~  232 (545)
T PRK07768        153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFL  232 (545)
T ss_pred             CEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHH
Confidence            99999999999999999999999999988888888888876 78877655432      35668999999988764 222


Q ss_pred             cCchHHHhhhhccccC
Q psy4550         234 YDPPRLTSGWVRLPLN  249 (251)
Q Consensus       234 ~~~~~~~~~i~~~~vt  249 (251)
                      .+|..+++.++++++|
T Consensus       233 ~~~~~~~~~i~~~~~~  248 (545)
T PRK07768        233 RDPLLWAELISKYRGT  248 (545)
T ss_pred             HhHHHHHHHHHHhCCE
Confidence            3788999999999986

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=2.9e-29  Score=214.63  Aligned_cols=202  Identities=20%  Similarity=0.244  Sum_probs=164.0

Q ss_pred             hhHHHHH-HHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          13 GALHYMF-RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        13 ~~l~~~l-~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      +++.+.+ ...++++|+++|+++ +++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+.+|+++
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRL-NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeec-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            3444455 444789999999984 77889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG  171 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  171 (251)
                      +|+++..+.+++.++++.+++++++++++... ...  ......        .    ...........++++++++||||
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~~~~--------~----~~~~~~~~~~~~~~~a~i~~TSG  145 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--LTSLHL--------Q----LVEGAHAVAWQPQRLATMTLTSG  145 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--cccccc--------c----cccccCcccCCCCCeEEEEECCC
Confidence            99999999999999999999999999876532 110  000000        0    00011223456788999999999


Q ss_pred             CCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecC
Q psy4550         172 TTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISD  230 (251)
Q Consensus       172 tTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~  230 (251)
                      |||.||||.+||+++...+......+++.++|+++..+|++|     .++.++..|+++++.+.
T Consensus       146 TTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~  209 (458)
T PRK09029        146 STGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK  209 (458)
T ss_pred             CCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh
Confidence            999999999999999999988888899999999877665433     24567999999998773

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=2.7e-29  Score=217.12  Aligned_cols=225  Identities=18%  Similarity=0.213  Sum_probs=163.7

Q ss_pred             HHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCC
Q psy4550          21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP   99 (251)
Q Consensus        21 ~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~   99 (251)
                      .+++++|+++|+++. +++.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++|+++..+
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            456789999999853 4678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccEEEEccchhhhhhccC--CCe-eeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCC
Q psy4550         100 PALLESVLDDAKPSIVITKGEYMDRLERTS--VPK-VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP  176 (251)
Q Consensus       100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p  176 (251)
                      ++++.+++++++++.+++++...+......  ... +...... ....................++.++|+|||||||.|
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P  163 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEI-DGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTGFP  163 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcc-cccccHHHHhcccCCCCCCCcccEEEEeCCCCCCCC
Confidence            999999999999999999876533222111  010 1110000 000000000000001111223579999999999999


Q ss_pred             ceEEe--ccHHHHHHH----HHHHHhCCCCCCChhhhhHHHHHH-----HHHhhhcCccEEEecCccccCchHHHhhhhc
Q psy4550         177 KGIVC--PHRGAVHAY----KWRHRAYPYDEDDREACNVFFVWE-----MLRPLTQGIPMYVISDEVIYDPPRLTSGWVR  245 (251)
Q Consensus       177 K~v~~--s~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~  245 (251)
                      |||++  +|.++....    ......+++..+++++..+|++|.     .+..+..|+++++.+.   +++..+++.|++
T Consensus       164 KgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~  240 (501)
T PRK13390        164 KGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKR---FDAQATLGHVER  240 (501)
T ss_pred             CEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCC---cCHHHHHHHHHH
Confidence            99995  566655432    112345677888888876654331     2334578999998876   899999999999


Q ss_pred             cccC
Q psy4550         246 LPLN  249 (251)
Q Consensus       246 ~~vt  249 (251)
                      +++|
T Consensus       241 ~~~t  244 (501)
T PRK13390        241 YRIT  244 (501)
T ss_pred             cCCe
Confidence            9987

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.9e-29  Score=211.19  Aligned_cols=183  Identities=15%  Similarity=0.137  Sum_probs=158.4

Q ss_pred             cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccE
Q psy4550          35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSI  114 (251)
Q Consensus        35 ~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~  114 (251)
                      .+++++||+||.++++++|+.|. .|+++|++|+++++|+++++.+++|++++|++++|+++..+.+++.++++.++++.
T Consensus         4 ~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~   82 (414)
T PRK08308          4 VNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHG   82 (414)
T ss_pred             ecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCE
Confidence            46789999999999999999985 67999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH
Q psy4550         115 VITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH  194 (251)
Q Consensus       115 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~  194 (251)
                      +++++....           .                 .......++++++++|||||||.||+|++||+++..++....
T Consensus        83 ~i~~~~~~~-----------~-----------------~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~  134 (414)
T PRK08308         83 LLYGESDFT-----------K-----------------LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYN  134 (414)
T ss_pred             EEecCcccc-----------c-----------------ccCCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHH
Confidence            998763110           0                 001123567899999999999999999999999999888888


Q ss_pred             HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         195 RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       195 ~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ..+++..+|+.+..+|+      ..+++.++..|+++++.+.   ++|..+++.++++++|
T Consensus       135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t  192 (414)
T PRK08308        135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN---KNPKFALNILRNTPQH  192 (414)
T ss_pred             HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC---CCHHHHHHHHHHhCCe
Confidence            88888888887654432      3457889999999999987   8999999999999987

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.2e-28  Score=215.67  Aligned_cols=235  Identities=24%  Similarity=0.358  Sum_probs=174.1

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      +.++.++|...++++|+++|+++ +++.+||.||.++++++|.+|.+ .|+++|++|+++++|+++++++++||+++|++
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  100 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFIN-MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI  100 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEE-CCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            45799999999999999999985 67789999999999999999985 89999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc--hhhh-----------------------
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN--DFLS-----------------------  141 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~--~~~~-----------------------  141 (251)
                      ++|++|..+.+++.++++.++++.++++++..+.+.+.    ....+....  +...                       
T Consensus       101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            99999999999999999999999999987654433221    111111100  0000                       


Q ss_pred             -----hhhhhh-hcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC---CCCCChhhhhHHH-
Q psy4550         142 -----KMISEN-EKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP---YDEDDREACNVFF-  211 (251)
Q Consensus       142 -----~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-  211 (251)
                           ...... ............++++++++|||||||.||+|.++|.++..+.......+.   ...++.++..+++ 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  260 (560)
T PRK08974        181 PDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLY  260 (560)
T ss_pred             CCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHH
Confidence                 000000 000001112245789999999999999999999999999887655443332   2234444443332 


Q ss_pred             -----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         212 -----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 -----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                           ....+.++..|+++++...  ..++..+++.++++++|
T Consensus       261 ~~~~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~i~~~~~t  301 (560)
T PRK08974        261 HIFALTVNCLLFIELGGQNLLITN--PRDIPGFVKELKKYPFT  301 (560)
T ss_pred             HHHHHHHHHHHHhhcCCeEEEecC--ccCHHHHHHHHHhcCcc
Confidence                 2235667788988777654  37899999999999987

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.2e-28  Score=211.93  Aligned_cols=227  Identities=22%  Similarity=0.295  Sum_probs=170.1

Q ss_pred             HHHHHhCCCceEEEe-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCC
Q psy4550          20 RNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY   98 (251)
Q Consensus        20 ~~~~~~~~~~~a~~~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~   98 (251)
                      ...++++|+++|+++ .+++.+||.||.+++.+++++|.+.|+++|++|+++++|+++++++++||+++|++++++++..
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            356788999999975 3577899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCccEEEEccchhhhhhccC-----C-Ceeeecchh-hhhhhhhhhcc-cCCCCCCCCCCCeEEEEecc
Q psy4550          99 PPALLESVLDDAKPSIVITKGEYMDRLERTS-----V-PKVKLENDF-LSKMISENEKL-HNVDFPQVGLDDIAYIVYSS  170 (251)
Q Consensus        99 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TS  170 (251)
                      +.+++.++++.++++.++++++..+...+..     . ..+....+. ........... ..........++.++++|||
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS  163 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSS  163 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCCCCCCcccccEEEECC
Confidence            9999999999999999999987655432211     0 111111100 00000000000 00111112344678999999


Q ss_pred             CCCCCCceEEe--ccHHHHH---HHHHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHH
Q psy4550         171 GTTGKPKGIVC--PHRGAVH---AYKWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLT  240 (251)
Q Consensus       171 GtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~  240 (251)
                      ||||.||||++  +|.++..   ........+++.++++++..++++|     ..+.++..|+++++.+.   +++..++
T Consensus       164 GtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~  240 (511)
T PRK13391        164 GTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEH---FDAEQYL  240 (511)
T ss_pred             CCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCC---CCHHHHH
Confidence            99999999995  4666543   2344556677888888877554433     35678899999999986   8999999


Q ss_pred             hhhhccccC
Q psy4550         241 SGWVRLPLN  249 (251)
Q Consensus       241 ~~i~~~~vt  249 (251)
                      +.++++++|
T Consensus       241 ~~i~~~~~t  249 (511)
T PRK13391        241 ALIEEYGVT  249 (511)
T ss_pred             HHHHHhCCe
Confidence            999999987

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.5e-28  Score=210.95  Aligned_cols=203  Identities=22%  Similarity=0.219  Sum_probs=165.9

Q ss_pred             HHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHH
Q psy4550          23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL  102 (251)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~  102 (251)
                      .++.++++|+++ +++++||+||.++++++|..|+     ++|+|+++++|+++++++++||+++|++++|+++..+.++
T Consensus        10 ~~~~~~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~   83 (471)
T PRK07787         10 AAAADIADAVRI-GGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE   83 (471)
T ss_pred             hcccCCceEEEe-CCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence            457789999974 7889999999999999999986     4799999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEec
Q psy4550         103 LESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP  182 (251)
Q Consensus       103 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s  182 (251)
                      +.++++.+++++++++++...    ...+........        ...  .......++++++++|||||||.||+|+++
T Consensus        84 l~~~l~~~~~~~il~~~~~~~----~~~~~~~~~~~~--------~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t  149 (471)
T PRK07787         84 RRHILADSGAQAWLGPAPDDP----AGLPHVPVRLHA--------RSW--HRYPEPDPDAPALIVYTSGTTGPPKGVVLS  149 (471)
T ss_pred             HHHHHHhcCCCEEEecCCccc----ccccceeeeccc--------ccc--ccCCCCCCCceEEEEECCCCCCCCCEEEEe
Confidence            999999999999999764210    011111110000        000  111224568999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         183 HRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      |+++...+......+++..++++++.+++      ..+++.++..|+++++.+.   +++..+++.|+ +++|
T Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~-~~~t  218 (471)
T PRK07787        150 RRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR---PTPEAYAQALS-EGGT  218 (471)
T ss_pred             HHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC---CCHHHHHHHHh-hCce
Confidence            99999999888888899999988765543      4467889999999999886   89999999999 8876

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.96  E-value=4.8e-28  Score=204.00  Aligned_cols=208  Identities=30%  Similarity=0.485  Sum_probs=167.4

Q ss_pred             eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550          41 TFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG  119 (251)
Q Consensus        41 T~~~l~~~~~~~a~~L~~-~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  119 (251)
                      ||.||.+.+.+++++|.+ .|+++||+|+++++|+++++++++||+.+|++++|+++..+.+++.++++.++++++++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC
Q psy4550         120 EYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY  199 (251)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~  199 (251)
                      +..................+.......  ............+++++++|||||||.||+|.+||+++...+......+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~  158 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPLELAALDDA--PAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGL  158 (408)
T ss_pred             chhhhccccCCceEEechhhhhhcccc--cccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCC
Confidence            877666544333333322221111111  000011112457899999999999999999999999999999998889999


Q ss_pred             CCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         200 DEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       200 ~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .++|++++..++     ...++.++..|+++++.+......+..+.+.++++++|.
T Consensus       159 ~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~  214 (408)
T TIGR01733       159 DPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTV  214 (408)
T ss_pred             CCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceE
Confidence            999988775543     345788999999999988732224789999999998873

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.96  E-value=1.2e-27  Score=203.23  Aligned_cols=194  Identities=19%  Similarity=0.225  Sum_probs=158.0

Q ss_pred             eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccc
Q psy4550          41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE  120 (251)
Q Consensus        41 T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~  120 (251)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCC
Q psy4550         121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD  200 (251)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~  200 (251)
                      .....    ....    ... ....... ...........+++++++|||||||.||+|.++|+++...+......++++
T Consensus        81 ~~~~~----~~~~----~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~  150 (436)
T TIGR01923        81 LEEKD----FQAD----SLD-RIEAAGR-YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFT  150 (436)
T ss_pred             ccccc----eeec----chH-hhhhccc-ccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCC
Confidence            43211    0000    000 0000000 001112344567899999999999999999999999999999888899999


Q ss_pred             CCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         201 EDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       201 ~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++|+++..++++     ..++.++..|+++++.+.   ++  .+++.|+++++|
T Consensus       151 ~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~---~~--~~~~~l~~~~~t  199 (436)
T TIGR01923       151 EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK---FN--QLLEMIANERVT  199 (436)
T ss_pred             CCceEEEccCcHhHHHHHHHHHHHhcCceEEecch---HH--HHHHHHHHhCCe
Confidence            999987755432     246788999999999886   43  999999999987

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=2.1e-27  Score=205.37  Aligned_cols=211  Identities=21%  Similarity=0.234  Sum_probs=158.1

Q ss_pred             ecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550          34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS  113 (251)
Q Consensus        34 ~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~  113 (251)
                      +.+++.+||+||.+.+.+++++|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++
T Consensus         6 ~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~   85 (502)
T PRK08276          6 APSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAK   85 (502)
T ss_pred             cCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccchhhhhhcc------CCCeeeecchhhh---hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccH
Q psy4550         114 IVITKGEYMDRLERT------SVPKVKLENDFLS---KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR  184 (251)
Q Consensus       114 ~vi~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~  184 (251)
                      ++++++...+...+.      ....+........   ........  .........++.++++|||||||.||+|.++|.
T Consensus        86 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~  163 (502)
T PRK08276         86 VLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAA--QPDTPIADETAGADMLYSSGTTGRPKGIKRPLP  163 (502)
T ss_pred             EEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhc--CCCCCCCCCCcceEEEECCCCCCCCceEEEccC
Confidence            999988766554322      1122222110000   00000000  011222355678999999999999999999988


Q ss_pred             HHHHHH------HHHHHhCCCCCCChhhhhHHHHH-----HHHHhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         185 GAVHAY------KWRHRAYPYDEDDREACNVFFVW-----EMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       185 ~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++....      ...........++++++..++++     ..+.++..|+++++.+.   ++|..+++.++++++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t  236 (502)
T PRK08276        164 GLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK---FDAEEALALIERYRVT  236 (502)
T ss_pred             CcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC---CCHHHHHHHHHHhCCe
Confidence            765322      22222222345677776554432     24568999999999886   8999999999999987

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.95  E-value=2.9e-27  Score=204.80  Aligned_cols=217  Identities=18%  Similarity=0.218  Sum_probs=161.6

Q ss_pred             eEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhh
Q psy4550          30 IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDD  109 (251)
Q Consensus        30 ~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~  109 (251)
                      .|+.+ +++.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|+++++++|..+.+++.++++.
T Consensus         3 ~~~~~-~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~   81 (509)
T PRK12406          3 ATIIS-GDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED   81 (509)
T ss_pred             eEEEE-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence            35553 67789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEEccchhhhhhccC---CCeeeecchhh--------hh-------hhhhhhc-ccCCCCCCCCCCCeEEEEecc
Q psy4550         110 AKPSIVITKGEYMDRLERTS---VPKVKLENDFL--------SK-------MISENEK-LHNVDFPQVGLDDIAYIVYSS  170 (251)
Q Consensus       110 ~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~--------~~-------~~~~~~~-~~~~~~~~~~~~~~~~i~~TS  170 (251)
                      ++++.++++.+..+.+....   ...+.......        ..       ....... ...........+++++++|||
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECC
Confidence            99999999887665443211   11111100000        00       0000000 000111233567999999999


Q ss_pred             CCCCCCceEEeccHHH---HHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         171 GTTGKPKGIVCPHRGA---VHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       171 GtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      ||||.||+|+++|.+.   ..........+++.++++++...+++     ...+.++..|+++++.+.   ++|..+++.
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~  238 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPR---FDPEELLQL  238 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccC---CCHHHHHHH
Confidence            9999999999876653   44444555677888898887654432     123456788999999886   899999999


Q ss_pred             hhccccCC
Q psy4550         243 WVRLPLNG  250 (251)
Q Consensus       243 i~~~~vt~  250 (251)
                      ++++++|.
T Consensus       239 l~~~~~t~  246 (509)
T PRK12406        239 IERHRITH  246 (509)
T ss_pred             HHHcCCeE
Confidence            99999873

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.95  E-value=5.6e-27  Score=199.94  Aligned_cols=168  Identities=9%  Similarity=0.077  Sum_probs=137.5

Q ss_pred             eeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550          40 ITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK  118 (251)
Q Consensus        40 ~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~  118 (251)
                      |.|+||.+++.++|++|+++|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             cchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCC
Q psy4550         119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYP  198 (251)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~  198 (251)
                      ++......         .     .   .  .   .......+++.++++|||||||.||||++||+++...+......++
T Consensus       100 ~~~~~~~~---------~-----~---~--~---~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~  157 (452)
T PRK07445        100 DQLKLSHP---------P-----P---L--P---SQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQ  157 (452)
T ss_pred             CccccccC---------C-----C---C--C---ccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhc
Confidence            65432100         0     0   0  0   0111235689999999999999999999999999988888777777


Q ss_pred             CCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550         199 YDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       199 ~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~  230 (251)
                      +.+. +.++.+|+     +..++.++..|+++++.+.
T Consensus       158 ~~~~-~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~  193 (452)
T PRK07445        158 LQQV-NSFCVLPLYHVSGLMQFMRSFLTGGKLVILPY  193 (452)
T ss_pred             CCCC-ceEeccCchhhhhHHHHHHHHHcCCeEEEcCh
Confidence            7554 44444443     2346778999999999874

>KOG1180|consensus

Probab=99.95  E-value=8.3e-27  Score=191.58  Aligned_cols=226  Identities=19%  Similarity=0.222  Sum_probs=179.5

Q ss_pred             CCCCcCchhhhHHHHHHHHHHhCCCceEEEe-----------cCCC-----------eeeHHHHHHHHHHHHHHHHhcCC
Q psy4550           4 VNLSDYDAEGALHYMFRNQAKRTPDKIAVVD-----------HDGR-----------SITFKQLDEWTDIVGTYLINQGC   61 (251)
Q Consensus         4 ~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~-----------~~~~-----------~~T~~~l~~~~~~~a~~L~~~g~   61 (251)
                      +-.+..+...|+.+++.+..+++.++.++-.           .+|+           ..||.|+..++.+++.+|.+.|+
T Consensus        32 L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~  111 (678)
T KOG1180|consen   32 LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGL  111 (678)
T ss_pred             ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCC
Confidence            3455677788999999999999999999741           2332           47999999999999999999999


Q ss_pred             CCCCE-EEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeee
Q psy4550          62 IVGST-VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKL  135 (251)
Q Consensus        62 ~~g~~-V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~  135 (251)
                      +++++ ++++++.+.+|+.++.||++.+..+|.++.++..+.+.|-+++++++.|||+.+...++...     ....++.
T Consensus       112 k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~  191 (678)
T KOG1180|consen  112 KPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY  191 (678)
T ss_pred             CCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence            97766 99999999999999999999999999999999999999999999999999999988765432     1122221


Q ss_pred             cc---------------------hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH
Q psy4550         136 EN---------------------DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH  194 (251)
Q Consensus       136 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~  194 (251)
                      .+                     ..++.+........ .++.+..++|+|+|+|||||||.||||+++|.|+++.+....
T Consensus       192 ~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~  270 (678)
T KOG1180|consen  192 FDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVG  270 (678)
T ss_pred             ecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhc
Confidence            11                     01122222222221 334455889999999999999999999999999999998888


Q ss_pred             HhC-CCCCCChhhhhHHHHH--HH---HHhhhcCccEEEecC
Q psy4550         195 RAY-PYDEDDREACNVFFVW--EM---LRPLTQGIPMYVISD  230 (251)
Q Consensus       195 ~~~-~~~~~~~~~~~~~~~~--~~---~~~l~~G~~~v~~~~  230 (251)
                      ... .+.+.|+++..+|+.|  ++   +.+++.|+++=..+.
T Consensus       271 ~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~  312 (678)
T KOG1180|consen  271 ENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSP  312 (678)
T ss_pred             ccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCc
Confidence            766 5889999988777654  33   678888988777664

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=7.6e-25  Score=194.72  Aligned_cols=231  Identities=27%  Similarity=0.450  Sum_probs=189.5

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      |...++.+.|.+.+.+.|++.|+. .++..+||+++..+++++|+.|.+.|+.+++.|+++.+.+.++++.++|++++|+
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~-~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~  302 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALV-RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA  302 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEe-cCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCC
Confidence            334689999999999999999997 4578899999999999999999999999999999999889999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS  169 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  169 (251)
                      .++|++|..+.+++.+++++++++.+++.............  +........    ....  ........+++.+|++||
T Consensus       303 ~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~--~~~~~~~~~~~~ayiiyt  374 (642)
T COG1020         303 AYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE----IPDT--DPIPQALLGDALAYIIYT  374 (642)
T ss_pred             eEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc----CCcc--CcccccCCCCCeEEEEEc
Confidence            99999999999999999999999999998443221111111  111111110    0000  001223456899999999


Q ss_pred             cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      |||||.||||+.+|+++..........++.+.+|+++...+     ..+.++.++..|+++++.+.....++..+.+.++
T Consensus       375 sgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~  454 (642)
T COG1020         375 SGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLE  454 (642)
T ss_pred             cCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHH
Confidence            99999999999999999998888888899999998876543     3578999999999999999888889999999999


Q ss_pred             ccccC
Q psy4550         245 RLPLN  249 (251)
Q Consensus       245 ~~~vt  249 (251)
                      ++++|
T Consensus       455 ~~~vt  459 (642)
T COG1020         455 AQGIT  459 (642)
T ss_pred             HcCCE
Confidence            99887

>KOG1175|consensus

Probab=99.93  E-value=2.3e-24  Score=183.77  Aligned_cols=221  Identities=22%  Similarity=0.275  Sum_probs=172.0

Q ss_pred             CCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCH
Q psy4550          26 TPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP  100 (251)
Q Consensus        26 ~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~  100 (251)
                      .+++++.+..     +...+||.|+.+++.++|..|.+.|+++||+|++++|..++++++.+||.++|++.+++-..+++
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~  157 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA  157 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence            4777887642     12348999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccEEEEccchhhhhhccC-------------------CCeeeecc---h-hhhhhhhhhhcccCCCCCC
Q psy4550         101 ALLESVLDDAKPSIVITKGEYMDRLERTS-------------------VPKVKLEN---D-FLSKMISENEKLHNVDFPQ  157 (251)
Q Consensus       101 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~  157 (251)
                      .++...++.+++++|++.+......+...                   ...+....   + ++........  .......
T Consensus       158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~--~~~~~~~  235 (626)
T KOG1175|consen  158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKAS--PEHPCVP  235 (626)
T ss_pred             HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcC--CCCCcee
Confidence            99999999999999999876433221110                   00000000   0 1111111111  1122556


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHH-HHHHHHHHHHhCCCCCCChhhhhH------HHHHHHHHhhhcCccEEEecC
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRG-AVHAYKWRHRAYPYDEDDREACNV------FFVWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~G~~~v~~~~  230 (251)
                      .+.+|+.+|+|||||||.||++.+++.. ++..+......++.+++|++.+..      .+.+..+.+|..|+++++...
T Consensus       236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g  315 (626)
T KOG1175|consen  236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG  315 (626)
T ss_pred             cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence            7778999999999999999999998886 567777777788999999998744      345567889999999999885


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                      . ++++..+++.+.+|+||
T Consensus       316 ~-p~~~~~~~~~v~k~~it  333 (626)
T KOG1175|consen  316 P-PFDPGRIWKILDKYKVT  333 (626)
T ss_pred             C-CCChhhhhhhHhhcceE
Confidence            2 45999999999999997

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.91  E-value=1.4e-23  Score=181.31  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=128.9

Q ss_pred             ccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh------hhhhcc----CCCeeeec--c-
Q psy4550          71 MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM------DRLERT----SVPKVKLE--N-  137 (251)
Q Consensus        71 ~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~----~~~~~~~~--~-  137 (251)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++...      +.+.+.    ....+...  . 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            5899999999999999999999999999999999999999999999986431      111110    11111110  0 


Q ss_pred             -----------hhhhhhhhhhhc---cc-CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC
Q psy4550         138 -----------DFLSKMISENEK---LH-NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED  202 (251)
Q Consensus       138 -----------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  202 (251)
                                 .+..........   .. ........++++++|+|||||||.||||++||+++..+.......+++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                       011111000000   00 001112356899999999999999999999999998877666667788899


Q ss_pred             ChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchHHHhhhhccccCC
Q psy4550         203 DREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       203 ~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      |++++.+|+.     ..++.++..|+++++.+.  .+++..+++.|+++++|.
T Consensus       161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~--~~~~~~~~~~i~~~~vt~  211 (499)
T PLN03051        161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGG--APLGRGFGKFVQDAGVTV  211 (499)
T ss_pred             CEEEEccCcceeeehHHHHHHHHcCCEEEecCC--CCCcHHHHHHHHHhCCcE
Confidence            9988766543     346788999999999874  378999999999999983

>KOG3628|consensus

Probab=99.85  E-value=1.4e-19  Score=158.80  Aligned_cols=237  Identities=14%  Similarity=0.171  Sum_probs=184.2

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      .++.++|+..++++|+.+|+.+.+     ++++||.+|.++|++++..|... -+++||.|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            689999999999999999998643     36799999999999999999987 589999999999999999999999999


Q ss_pred             HCCeEeeCCCCC------CHHHHHHHHhhcCccEEEEccchhhhhhcc---------CCCeeeecchhhhhhhhhhhcc-
Q psy4550          87 AGGGYLPLETSY------PPALLESVLDDAKPSIVITKGEYMDRLERT---------SVPKVKLENDFLSKMISENEKL-  150 (251)
Q Consensus        87 ~G~~~v~i~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-  150 (251)
                      +|++++|+.|.-      ..+.+..+++.+++..|+++......++..         ..+.+..-.+............ 
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~  929 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK  929 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence            999999998844      357788999999999999998765554432         2222222222222222222111 


Q ss_pred             ---cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhh------hHHHHHHHHHhhhc
Q psy4550         151 ---HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREAC------NVFFVWEMLRPLTQ  221 (251)
Q Consensus       151 ---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~  221 (251)
                         ...++....++.+|++-|.--++|.--++..||.++++.++.......+.+..-++.      -+.+.+..|..+++
T Consensus       930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVys 1009 (1363)
T KOG3628|consen  930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYS 1009 (1363)
T ss_pred             ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHc
Confidence               112233456678999999999999999999999999999998888777665554433      23557788899999


Q ss_pred             CccEEEecC-ccccCchHHHhhhhccccC
Q psy4550         222 GIPMYVISD-EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       222 G~~~v~~~~-~~~~~~~~~~~~i~~~~vt  249 (251)
                      |.+.++.++ +..-+|..|++.|++|||.
T Consensus      1010 Gh~T~Li~p~~l~nnpsLll~~i~~~kvk 1038 (1363)
T KOG3628|consen 1010 GHPTLLISPMDLENNPSLLLQIISQYKVK 1038 (1363)
T ss_pred             CCceeecCHHHhhcCHHHHHHHHhccccc
Confidence            987666664 5566999999999999974

>KOG1178|consensus

Probab=99.49  E-value=9.9e-14  Score=124.90  Aligned_cols=235  Identities=23%  Similarity=0.378  Sum_probs=157.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEec-----CC--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDH-----DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI   84 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~-----~~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~   84 (251)
                      +.++.+.+.+.+...|.+.+..+.     .+  ..+||++....++.+++.|...|...|+.|++++..+.++++..+++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~  114 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAV  114 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeeh
Confidence            346677888889999988877531     12  46999999999999999999999999999999999999999999999


Q ss_pred             HHHCCeEeeCCCCCC----HHHHHHHH---hhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCC
Q psy4550          85 HKAGGGYLPLETSYP----PALLESVL---DDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQ  157 (251)
Q Consensus        85 ~~~G~~~v~i~~~~~----~~~l~~~l---~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (251)
                      +++|..+++++|.++    ++++..+.   ......++.-. +..........+...+... .+................
T Consensus       115 ~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l-~i~~~~~~~~~~~~sv~~~-~~~f~~~~~~~~~r~~~~  192 (1032)
T KOG1178|consen  115 LAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL-NIIDILLNSLFPKLSVETI-ADSFQMVLHNEDTREIRV  192 (1032)
T ss_pred             hhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh-hhHHHHhhccccccchhhc-cchhhhhhccCCCcceee
Confidence            999999999999998    33222211   11111111100 0000000000011000000 111111111111122233


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH------HHHH-HHHhhhcCccEEEecC
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF------FVWE-MLRPLTQGIPMYVISD  230 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~l~~G~~~v~~~~  230 (251)
                      .-++..+++.||||+||.||+|.-+|..+.....+....+..+..+.+ ...+      .... +...+..|..++.+..
T Consensus       193 ~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~  271 (1032)
T KOG1178|consen  193 GGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTA  271 (1032)
T ss_pred             ecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccc
Confidence            455678899999999999999999999999999999999998888876 3222      1233 3455666666666666


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                      ...-+|..+.+.+++|+++
T Consensus       272 ~~~~~~~~l~~~le~y~i~  290 (1032)
T KOG1178|consen  272 TIKDTPGQLASTLERYGIT  290 (1032)
T ss_pred             cCccchhhHHHHHHhhhhe
Confidence            4444589999999999886

>KOG3628|consensus

Probab=99.36  E-value=3.6e-12  Score=113.07  Aligned_cols=236  Identities=16%  Similarity=0.210  Sum_probs=169.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEe--cCC--CeeeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEccCC--HHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVD--HDG--RSITFKQLDEWTDIVGT-YLINQGCIVGSTVGVLMERC--LEWTISYIAI   84 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~--~~~--~~~T~~~l~~~~~~~a~-~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~   84 (251)
                      +..+..++...-.+++...|.+.  ..|  ..+||..+..++.+.|+ .|-+-|+.++|+|.++...+  +++++..++|
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc  172 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGC  172 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccc
Confidence            34566677777778888888874  334  35999999999999999 56667999999999999976  8999999999


Q ss_pred             HHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC-Ceeeecchhhhhhhhh-hhcccCCCCCCCCCCC
Q psy4550          85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV-PKVKLENDFLSKMISE-NEKLHNVDFPQVGLDD  162 (251)
Q Consensus        85 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  162 (251)
                      ...|.+.+|+.+..+.+++..+++....+++++..+-...+..... ....-.-.|+...... .-.......+...-. 
T Consensus       173 ~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-  251 (1363)
T KOG3628|consen  173 FLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-  251 (1363)
T ss_pred             cccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcccccceeehhhccCCceeee-
Confidence            9999999999999999999999999999999998776555443221 1111011111111111 001111222333333 


Q ss_pred             eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh--------------------CCCCCCChhhh------hHHHHHHHH
Q psy4550         163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA--------------------YPYDEDDREAC------NVFFVWEML  216 (251)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~~------~~~~~~~~~  216 (251)
                      .++|-||++++|+--|++.+|+ ++.+.+.....                    ++....+.++.      .+.+..+++
T Consensus       252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~  330 (1363)
T KOG3628|consen  252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL  330 (1363)
T ss_pred             eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence            8899999999999999999999 55544332221                    12222333322      224567899


Q ss_pred             HhhhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         217 RPLTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       217 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .++++|.|.+.+++...+.|..+.+++.+|+++
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~  363 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRAT  363 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeE
Confidence            999999999999998889999999999999875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.32  E-value=3.8e-12  Score=106.32  Aligned_cols=83  Identities=13%  Similarity=0.092  Sum_probs=66.8

Q ss_pred             CCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCC--ChhhhhHHHH------HHHHHhhhcCccEEEecCcc
Q psy4550         161 DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDED--DREACNVFFV------WEMLRPLTQGIPMYVISDEV  232 (251)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~  232 (251)
                      +..++++|||||||.||||++||+++...+......+++..+  +++++.+|++      +.++.++..|+++++.+.  
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~--  172 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA--  172 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC--
Confidence            457899999999999999999999999988888887777544  4576654432      345778889999999886  


Q ss_pred             ccCchHHHhhhhcc
Q psy4550         233 IYDPPRLTSGWVRL  246 (251)
Q Consensus       233 ~~~~~~~~~~i~~~  246 (251)
                       +++..+++.++.+
T Consensus       173 -~~~~~~l~~i~~~  185 (386)
T TIGR02372       173 -APASGIMRHARPG  185 (386)
T ss_pred             -CChHHHHHhhccC
Confidence             8898898888764

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.27  E-value=1.5e-11  Score=102.18  Aligned_cols=90  Identities=21%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCc
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~  231 (251)
                      ...++++++++|||||||.||+|+++|+++..........++  ..++++..+|++     ..++.++..|++.++....
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~  108 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRLG--GPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS  108 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhccC--CCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence            345689999999999999999999999999988776655443  344554443332     2356788899998883322


Q ss_pred             cccCchHHHhhhhcccc
Q psy4550         232 VIYDPPRLTSGWVRLPL  248 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~v  248 (251)
                      ..+++..+++.+++++.
T Consensus       109 ~~~~~~~~~~~i~~~~~  125 (358)
T PRK07824        109 AGFDPTALPRAVAELGG  125 (358)
T ss_pred             CCcCHHHHHHHHHHhCC
Confidence            24899999999999873

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=98.97  E-value=1.4e-09  Score=92.44  Aligned_cols=88  Identities=17%  Similarity=-0.016  Sum_probs=67.3

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH---HHHhCCCCCCChhhhhHH------HHHHHHHhhhcCccEEEec
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW---RHRAYPYDEDDREACNVF------FVWEMLRPLTQGIPMYVIS  229 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~~~v~~~  229 (251)
                      ..++++.+++||||||.||++.++|.++......   ....+++.++|++++..+      .....+.....|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4567889999999999999999999998765333   234468888888765321      1122455778899998887


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .   .++..+++.|+++++|
T Consensus       153 ~---~~~~~~~~~i~~~~~t  169 (422)
T TIGR02155       153 G---GQTEKQVQLIQDFKPD  169 (422)
T ss_pred             C---CCHHHHHHHHHHHCCC
Confidence            6   6789999999999997

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.65  E-value=4.3e-08  Score=83.83  Aligned_cols=88  Identities=17%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhHHH-----HHH-HHHhhhcCccEEEe
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNVFF-----VWE-MLRPLTQGIPMYVI  228 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~-~~~~l~~G~~~v~~  228 (251)
                      .+.++++.+.+||||||.||+|.+||.++.........   ..++.++|+++...+.     ... .+.+...|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            34568889999999999999999999998876554443   3488888887664322     112 24556778876543


Q ss_pred             cCccccCchHHHhhhhccccCC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ..     ....++.|+++++|.
T Consensus       163 ~~-----~~~~~~~i~~~~~t~  179 (445)
T TIGR03335       163 GK-----CTFPIRIIESYRPTG  179 (445)
T ss_pred             Cc-----hhHHHHHHHHhCCCE
Confidence            32     245688898888873

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.90  E-value=0.0086  Score=50.48  Aligned_cols=84  Identities=17%  Similarity=0.261  Sum_probs=71.0

Q ss_pred             eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      +|+.+....+..+|+.|...|..+||+|.+....+...  +...+|+.++|+.++|+.+. .-+.-..++++.++.+|.+
T Consensus       110 ~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~~  188 (438)
T COG1541         110 YTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIAA  188 (438)
T ss_pred             cCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEEE
Confidence            89999999999999999999999999999988833222  67889999999999999884 4455667889999999999


Q ss_pred             ccchhhh
Q psy4550         118 KGEYMDR  124 (251)
Q Consensus       118 ~~~~~~~  124 (251)
                      .+.+.-.
T Consensus       189 tps~~l~  195 (438)
T COG1541         189 TPSYLLY  195 (438)
T ss_pred             ChHHHHH
Confidence            8876443

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.81  E-value=0.0028  Score=53.29  Aligned_cols=93  Identities=18%  Similarity=0.013  Sum_probs=62.4

Q ss_pred             CCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH---hCCCCCCChhhhhHH-H--H--HH-HHHhhhcCccE
Q psy4550         155 FPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR---AYPYDEDDREACNVF-F--V--WE-MLRPLTQGIPM  225 (251)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~--~--~~-~~~~l~~G~~~  225 (251)
                      ....+.++...|--||||||+|+-+.++...+...+..++.   ..+...+|++..... +  .  .+ -+++--.|+++
T Consensus        84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v  163 (438)
T COG1541          84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV  163 (438)
T ss_pred             cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence            33455567777889999999999999999987766554444   346777887744321 1  1  11 12333367666


Q ss_pred             EEecCccccCchHHHhhhhccccCC
Q psy4550         226 YVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       226 v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +-.+.   -+-+.-+++++.+++|.
T Consensus       164 ip~~~---g~~~~~~~l~~df~~tv  185 (438)
T COG1541         164 IPISG---GNTERQLELMKDFKPTV  185 (438)
T ss_pred             EccCC---ccHHHHHHHHHhcCCcE
Confidence            66654   57788888888888874

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=93.87  E-value=0.62  Score=39.74  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=64.0

Q ss_pred             eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        40 ~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      +|..++......++..+...|+++||++........  ......++.+..|+..+++++.. .+.+...++..++++++.
T Consensus        95 ~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~  173 (422)
T TIGR02155        95 YTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIMV  173 (422)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEEE
Confidence            788888777777778888889999999887665432  22334667888999999887654 577889999999999998


Q ss_pred             ccchhh
Q psy4550         118 KGEYMD  123 (251)
Q Consensus       118 ~~~~~~  123 (251)
                      .+....
T Consensus       174 ~Ps~l~  179 (422)
T TIGR02155       174 TPSYML  179 (422)
T ss_pred             cHHHHH
Confidence            876543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=93.75  E-value=0.78  Score=39.55  Aligned_cols=80  Identities=10%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH--HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE--WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|..++...+..++..+...|+++||++.+..+.+..  .....+++...|+.++|...   ......++++.++..++
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~  181 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV  181 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence            38999999988888888888999999999998876543  23456788889998876643   23456778888988887


Q ss_pred             Eccch
Q psy4550         117 TKGEY  121 (251)
Q Consensus       117 ~~~~~  121 (251)
                      .....
T Consensus       182 ~~ps~  186 (445)
T TIGR03335       182 ASVFK  186 (445)
T ss_pred             ECHHH
Confidence            75543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=91.30  E-value=2  Score=33.39  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             HhcCCCCCCEEEEEccCC-H-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCcc
Q psy4550          57 INQGCIVGSTVGVLMERC-L-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS  113 (251)
Q Consensus        57 ~~~g~~~g~~V~l~~~~~-~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~  113 (251)
                      ...|+.++|++. .+|=. . .....+++.+..|+..+.+ ++++++++.+.+++.+++
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERVT  227 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcCC
Confidence            566899999999 88833 2 3345789999999998877 689999999999988763

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=89.36  E-value=0.94  Score=38.84  Aligned_cols=86  Identities=9%  Similarity=-0.111  Sum_probs=46.3

Q ss_pred             eEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHh--CCCCCCChhhhhHHHHHHHHHhhhcCccEEEecCccccCchHH
Q psy4550         163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRA--YPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRL  239 (251)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  239 (251)
                      -..+..||||||.|-.+..+......... .....  .++..++++......-..++..+... .+-+..-+..-+.+.+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~~~-~~~~~~~~l~~~~~~~  179 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVNNR-WISLDFFDLLAPFQAH  179 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHHhc-cceeeecCCCcCHHHH
Confidence            34667899999999999999987643322 22222  24555555543311000111222221 1102222222467888


Q ss_pred             HhhhhccccC
Q psy4550         240 TSGWVRLPLN  249 (251)
Q Consensus       240 ~~~i~~~~vt  249 (251)
                      ++.|+++++|
T Consensus       180 l~~L~~~~P~  189 (430)
T TIGR02304       180 IKRLNQRKPS  189 (430)
T ss_pred             HHHHHHhCCC
Confidence            9999998876

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=88.32  E-value=5.1  Score=34.85  Aligned_cols=83  Identities=10%  Similarity=-0.066  Sum_probs=62.3

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|++.+.........   ..+++++|++....+-...+ +...++++..|+..+..+.. +.+.+...++..+++.+++
T Consensus       186 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~  261 (521)
T PRK06187        186 VLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFA  261 (521)
T ss_pred             EeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEc
Confidence            4789888876665544   45788999998887754322 34455588889888877664 8999999999999999999


Q ss_pred             ccchhhhh
Q psy4550         118 KGEYMDRL  125 (251)
Q Consensus       118 ~~~~~~~~  125 (251)
                      .+.....+
T Consensus       262 ~p~~~~~l  269 (521)
T PRK06187        262 VPTIWQML  269 (521)
T ss_pred             hHHHHHHH
Confidence            87765544

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=87.84  E-value=4.5  Score=35.23  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH--HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL--EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|++.+...+..+..   ..+++++|++....+-..  .+...+++++..|+.+++. +..+++.+...+++.++++++
T Consensus       185 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~  260 (513)
T PRK07656        185 MLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVLP  260 (513)
T ss_pred             EEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEEe
Confidence            4899988766655433   347889999988777443  2345578889999988765 567899999999999999998


Q ss_pred             Eccchhhhh
Q psy4550         117 TKGEYMDRL  125 (251)
Q Consensus       117 ~~~~~~~~~  125 (251)
                      ..+.....+
T Consensus       261 ~~p~~~~~l  269 (513)
T PRK07656        261 GPPTMYNSL  269 (513)
T ss_pred             chHHHHHHH
Confidence            877665544

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=87.43  E-value=2.1  Score=35.87  Aligned_cols=92  Identities=21%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---C-CCCCCChh-h--hhH-------HH-HHHHHHhhhc
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---Y-PYDEDDRE-A--CNV-------FF-VWEMLRPLTQ  221 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~~~~-~--~~~-------~~-~~~~~~~l~~  221 (251)
                      ...++++..++-||||||.|--+.+.+..+..........   + +....... +  .+.       .. ....+..+..
T Consensus        85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~  164 (365)
T PF04443_consen   85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF  164 (365)
T ss_pred             ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence            3445677788999999999866666665555444333322   2 22221111 1  111       11 1223333445


Q ss_pred             CccEEEecCccccCchHHHhhhhccccCC
Q psy4550         222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +....+-..  .++...++..+.+.+-.|
T Consensus       165 ~~~~~l~~~--~ld~~~~~~~L~~~~~~~  191 (365)
T PF04443_consen  165 GSRFALDND--ELDLEGLIEALFRAEHSG  191 (365)
T ss_pred             CceeeecCC--ccCHHHHHHHHHHHHhCC
Confidence            555444222  467788887777654443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PRK08315 AMP-binding domain protein; Validated

Probab=85.19  E-value=8.6  Score=33.98  Aligned_cols=81  Identities=6%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|+..+...+..+..   ..+++++|++....+-.  ..++..+++.+..|+..+......++..+...+++.++++++
T Consensus       218 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~  294 (559)
T PRK08315        218 TLTHRNILNNGYFIGE---AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALY  294 (559)
T ss_pred             EeeHHHHHHHHHHHHH---hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEe
Confidence            4788888766554433   34788999998777742  344556788888898877555667888899999999999988


Q ss_pred             Eccchh
Q psy4550         117 TKGEYM  122 (251)
Q Consensus       117 ~~~~~~  122 (251)
                      ..+...
T Consensus       295 ~~P~~~  300 (559)
T PRK08315        295 GVPTMF  300 (559)
T ss_pred             cchHHH
Confidence            766543

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=84.85  E-value=0.4  Score=42.28  Aligned_cols=32  Identities=25%  Similarity=0.178  Sum_probs=25.7

Q ss_pred             CCCCCCeEEEEeccCCCCC-CceEEeccHHHHH
Q psy4550         157 QVGLDDIAYIVYSSGTTGK-PKGIVCPHRGAVH  188 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~  188 (251)
                      ...++.+.+...||||||. ||-+.+|...+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            4556678899999999999 9999999998755

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02565 cysteine synthase

Probab=84.42  E-value=16  Score=30.04  Aligned_cols=91  Identities=12%  Similarity=-0.112  Sum_probs=62.9

Q ss_pred             ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHH
Q psy4550          29 KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVL  107 (251)
Q Consensus        29 ~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~-~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l  107 (251)
                      ++.+.. +...-|.+-=++-+..+-..+.+.|. .+|....+....+---..+.+++...|..++.+-|...+......+
T Consensus        31 ~i~~K~-E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i  109 (322)
T PLN02565         31 RIAAKL-EMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIIL  109 (322)
T ss_pred             eEEEEe-cccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH
Confidence            455542 33333333233444445555566664 7886655666666666777888899999888888888888999999


Q ss_pred             hhcCccEEEEccc
Q psy4550         108 DDAKPSIVITKGE  120 (251)
Q Consensus       108 ~~~~~~~vi~~~~  120 (251)
                      +..+++++++++.
T Consensus       110 ~~~GA~V~~~~~~  122 (322)
T PLN02565        110 LAFGAELVLTDPA  122 (322)
T ss_pred             HHcCCEEEEeCCC
Confidence            9999999999853

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=84.32  E-value=5.2  Score=33.98  Aligned_cols=82  Identities=9%  Similarity=-0.033  Sum_probs=60.2

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|++.+...+..+...   .+++++|++....+-. ...+..+++.+..|+..+..++.   ..+.+.+++.+++++..
T Consensus       130 ~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~  203 (436)
T TIGR01923       130 PHTFRNHYASAVGSKEN---LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISL  203 (436)
T ss_pred             EEehHHHHHHHHHHHhh---cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEe
Confidence            58999988777666554   3788999998777643 22234567888899888877543   38888999999999998


Q ss_pred             ccchhhhhh
Q psy4550         118 KGEYMDRLE  126 (251)
Q Consensus       118 ~~~~~~~~~  126 (251)
                      .+.....+.
T Consensus       204 ~P~~l~~l~  212 (436)
T TIGR01923       204 VPTQLNRLL  212 (436)
T ss_pred             HHHHHHHHH
Confidence            776654443

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=83.82  E-value=18  Score=31.95  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=65.7

Q ss_pred             CCCceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeCC
Q psy4550          26 TPDKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPLE   95 (251)
Q Consensus        26 ~~~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i~   95 (251)
                      .++.++++.. .|       -.+|++.+...+....   ...++.++|++...+|-.  ..+...++..+..|+..+...
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~  257 (539)
T PRK06334        181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY  257 (539)
T ss_pred             CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence            4566776532 22       3589988876554433   345678899988877632  222234566777888777655


Q ss_pred             CCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550          96 TSYPPALLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus        96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                      ....++.+...++..+++++...+.....+
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  287 (539)
T PRK06334        258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYI  287 (539)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEecHHHHHHH
Confidence            557889999999999999999887765443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=83.81  E-value=13  Score=32.39  Aligned_cols=84  Identities=10%  Similarity=0.019  Sum_probs=63.4

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|+..+...+..+...   .++++||++...++-+.. .+..+++++..|+..+.. +...++.+...++..+++++..
T Consensus       180 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~  255 (515)
T TIGR03098       180 VLSHRNLVAGAQSVATY---LENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLH-DYLLPRDVLKALEKHGITGLAA  255 (515)
T ss_pred             EEecHHHHHHHHHHHHH---hCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEc-CCCCHHHHHHHHHHcCCceEec
Confidence            48999888776665543   367889999888885432 345677888899988865 4568899999999999999999


Q ss_pred             ccchhhhhh
Q psy4550         118 KGEYMDRLE  126 (251)
Q Consensus       118 ~~~~~~~~~  126 (251)
                      .+.....+.
T Consensus       256 ~P~~~~~l~  264 (515)
T TIGR03098       256 VPPLWAQLA  264 (515)
T ss_pred             ChHHHHHHH
Confidence            887655544

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PLN03051 acyl-activating enzyme; Provisional

Probab=83.78  E-value=11  Score=33.03  Aligned_cols=83  Identities=7%  Similarity=-0.146  Sum_probs=57.2

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|++.+...+...   ....++.++|++....+-.- .....+++.+..|+..+..+.....+.+...+++.+++++..
T Consensus       138 ~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~  214 (499)
T PLN03051        138 PWTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGL  214 (499)
T ss_pred             EEccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEe
Confidence            47887765543322   23457888998876666321 123456778889998887765456788999999999999998


Q ss_pred             ccchhhh
Q psy4550         118 KGEYMDR  124 (251)
Q Consensus       118 ~~~~~~~  124 (251)
                      .+.....
T Consensus       215 vP~~~~~  221 (499)
T PLN03051        215 VPSIVKA  221 (499)
T ss_pred             CHHHHHH
Confidence            7765543

>KOG1177|consensus

Probab=83.65  E-value=24  Score=30.80  Aligned_cols=83  Identities=11%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc--CCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEE
Q psy4550          38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME--RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIV  115 (251)
Q Consensus        38 ~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~--~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v  115 (251)
                      -++|.-++...+...+..+   |+...+++++-.|  .+.-.++..+|++.-|+..|.-+|...+...-..+.+.+++.+
T Consensus       252 atLsH~~~~Nna~~vg~r~---g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l  328 (596)
T KOG1177|consen  252 ATLSHYNFLNNARAVGARA---GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTL  328 (596)
T ss_pred             eeeehhhhhhhHHHHHHHh---CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEE
Confidence            4799999999998876644   4444445444333  2233466788999999999998999999999999999999999


Q ss_pred             EEccchhh
Q psy4550         116 ITKGEYMD  123 (251)
Q Consensus       116 i~~~~~~~  123 (251)
                      +..+...-
T Consensus       329 ~gtPtM~~  336 (596)
T KOG1177|consen  329 YGTPTMFV  336 (596)
T ss_pred             ecChHHHH
Confidence            98876543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=83.04  E-value=13  Score=32.74  Aligned_cols=81  Identities=7%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|++.+...+..+...   .+++++|++....+-  ....+..+++++..|+.++.......+..+.+.+++.+++.++
T Consensus       220 ~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~  296 (558)
T PRK12583        220 TLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALY  296 (558)
T ss_pred             EeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEe
Confidence            58898886665554433   478899998777663  2344566778888888777444556788889999999999998


Q ss_pred             Eccchh
Q psy4550         117 TKGEYM  122 (251)
Q Consensus       117 ~~~~~~  122 (251)
                      ..+...
T Consensus       297 ~~P~~~  302 (558)
T PRK12583        297 GVPTMF  302 (558)
T ss_pred             ccHHHH
Confidence            877653

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=81.13  E-value=13  Score=31.24  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             CCCceEEEec-C---C----CeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCC--HHHHHHHHHHHHHCCeEeeC
Q psy4550          26 TPDKIAVVDH-D---G----RSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERC--LEWTISYIAIHKAGGGYLPL   94 (251)
Q Consensus        26 ~~~~~a~~~~-~---~----~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~--~~~~~~~~a~~~~G~~~v~i   94 (251)
                      .+++++++.. .   |    -.+|++.+...+..+.  +... +++  |++..++|-+  ..++..+++.+..|+..+..
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~  228 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLP  228 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEE
T ss_pred             CccceeEeeccccccccccccccccccccccccccc--cccccccC--ceEEeecccccccccccccccccccccccccc
Confidence            5688888742 2   2    2489999999988876  4332 333  6777776644  33337889999999999888


Q ss_pred             CCCCC--HHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550          95 ETSYP--PALLESVLDDAKPSIVITKGEYMDRLE  126 (251)
Q Consensus        95 ~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~  126 (251)
                      ++...  ++.+...+++.+++.+++.+...+.+.
T Consensus       229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~  262 (417)
T PF00501_consen  229 SPFDLFDPESLLELISRYKPTILFAVPSMLEALL  262 (417)
T ss_dssp             SSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHH
T ss_pred             ccccccccccchhccccccccccccccccccccc
Confidence            76543  567889999999999999887665543

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=80.72  E-value=2  Score=38.34  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=24.8

Q ss_pred             CCCeEEEEeccCCCC-CCceEEeccHHHHH
Q psy4550         160 LDDIAYIVYSSGTTG-KPKGIVCPHRGAVH  188 (251)
Q Consensus       160 ~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~  188 (251)
                      ++.+.+..-|||||| ++|.+.+|...+-.
T Consensus        88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  117 (606)
T PLN02247         88 AQPITELLTSSGTSGGQPKLMPSTAEELDR  117 (606)
T ss_pred             CCCcceeeccCCCCCCceeEeeccHHHHHH
Confidence            567788899999995 89999999987654

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=80.53  E-value=21  Score=29.08  Aligned_cols=71  Identities=10%  Similarity=-0.046  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550          48 WTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG  119 (251)
Q Consensus        48 ~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  119 (251)
                      -+..+.....+.| +++|+ ..|=..++---+.+.+.|...|..++.+=|...+.+...+|+..++.+++++.
T Consensus        45 ~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          45 IALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            3344444455555 89999 44555566666778888888999888888888888899999999999999987

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=80.34  E-value=17  Score=30.40  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=63.7

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCC--HHHHHHHHhhcCccEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYP--PALLESVLDDAKPSIV  115 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~--~~~l~~~l~~~~~~~v  115 (251)
                      .+|++.+...+..+..   ..+++++|++....+-... .+..+++.+..|+..+..+....  ++.+..+++..+++.+
T Consensus       139 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  215 (408)
T TIGR01733       139 VVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVL  215 (408)
T ss_pred             EeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEE
Confidence            4788888877766654   4467789999887774433 45667888888888877766554  7889999999999999


Q ss_pred             EEccchhhhhh
Q psy4550         116 ITKGEYMDRLE  126 (251)
Q Consensus       116 i~~~~~~~~~~  126 (251)
                      +..+...+.+.
T Consensus       216 ~~~p~~~~~l~  226 (408)
T TIGR01733       216 NLTPSLLALLA  226 (408)
T ss_pred             EeCHHHHHHHH
Confidence            99887766554

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=80.22  E-value=16  Score=31.53  Aligned_cols=83  Identities=11%  Similarity=-0.011  Sum_probs=59.3

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|+..+...+....   ...+++++|++...++-.- ..+..+++.+..|+..+..+ ..++.++...+++.+++++..
T Consensus       160 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~  235 (483)
T PRK03640        160 IQTYGNHWWSAVGSA---LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-KFDAEKINKLLQTGGVTIISV  235 (483)
T ss_pred             EEecHHHHHHHHHHH---HhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHhCCcEEEe
Confidence            478887765543332   3358899999988887422 22334567777888877664 578999999999999999999


Q ss_pred             ccchhhhh
Q psy4550         118 KGEYMDRL  125 (251)
Q Consensus       118 ~~~~~~~~  125 (251)
                      .+.....+
T Consensus       236 ~P~~~~~l  243 (483)
T PRK03640        236 VSTMLQRL  243 (483)
T ss_pred             HHHHHHHH
Confidence            87765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		6e-24
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		7e-21
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		9e-21
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		7e-17
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-15
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		7e-13
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-12
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		7e-10
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		8e-10
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		9e-10
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		5e-09
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		5e-09
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		5e-09
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-09
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		4e-08
4dg8_A	620	Structure Of Pa1221, An Nrps Protein Containing Ade		6e-07
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		7e-07
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		8e-07
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		9e-07
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		9e-07
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		9e-07
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		9e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-06
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		6e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-05
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-04
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-04
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-04
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		4e-04
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		4e-04
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		4e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		5e-04
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		8e-04

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Query: 7   SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
           ++Y  +  +H +F  Q  + P+ +A+V  +   +T+ +L+   + +    I +G    + 
Sbjct: 33  AEYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTL 91
Query: 67  VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
           VG++ME+ ++  I  +A+ KAGG Y+P++  YP   ++ +LDD++  +++T+   +  + 
Sbjct: 92  VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH 151
Query: 127 RTSVP-KVKL-ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                 +V++ E D +   I E   LH    P     D+AY++Y+SGTTG PKG +  H+
Sbjct: 152 NIQFNGQVEIFEEDTIK--IREGTNLH---VPSKS-TDLAYVIYTSGTTGNPKGTMLEHK 205
Query: 185 GAVHAYKWRHRAYPYDEDDR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYD 235
           G  +   +   +    E DR  +  ++ F   VWEM   L  G  +Y+I  + I D
Sbjct: 206 GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIND 261

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 11  AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
           A   +H +F  QA R PD +A++ H+   +T+  L+E  + +   L+  G   G+ VGV 
Sbjct: 73  AGACVHELFEAQAARAPDAVALL-HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVH 131
Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
           +ER  +  ++ +A+ KAGGGY  L+  +P   L   L+D    +++T      RL  T+ 
Sbjct: 132 LERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTT 191
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
             + +E++  S   + N          VG +D+A ++++SG+TG+PKG++ PHR     Y
Sbjct: 192 --LYVEDEAASDAPAGNLAT------GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 11  AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVL 70
           A   +H +F  QA R PD +A++ H+   +T+  L+E  + +   L+  G   G+ VGV 
Sbjct: 73  AGACVHELFEAQAARAPDAVALL-HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVH 131
Query: 71  MERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
           +ER  +  ++ +A+ KAGGGY  L+  +P   L   L+D    +++T      RL  T+ 
Sbjct: 132 LERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTT 191
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
             + +E++  S   + N          VG +D+A ++++SG+TG+PKG++ PHR     Y
Sbjct: 192 --LYVEDEAASDAPAGNLAT------GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 21/223 (9%)
Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L  +FR  A   P++ A+   D R I++ +LD W+D V   L+ +G   G  V + M   
Sbjct: 37  LVSLFREVAATAPERTALSAEDDR-ISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPG 95
Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT---KGEYMDRLERT-SV 130
            E  ++ +AI K G  Y+P++   P +  + +L D+  S +I    +G  + R+ RT +V
Sbjct: 96  AEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAV 155
Query: 131 PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
            + K           + E       P  G +D+AY++Y+SGTTG PKG+   H   +   
Sbjct: 156 AECK-----------DAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALL 204
Query: 191 KWRHRAYPYDEDDR-----EACNVFFVWEMLRPLTQGIPMYVI 228
                 + +  DDR          F VWE+    + G  + V+
Sbjct: 205 AGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVL 247

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 13/232 (5%)
Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L Y F+      PD  A+  + G+++++++LDE  + +   L   G   GS V +  +R 
Sbjct: 466 LTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRS 524
Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
           LE  I  + + KAG  YLP++   P   +  +L D+  + ++T  E  ++          
Sbjct: 525 LELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTT 584
Query: 135 LENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           L   F+       E+  +   P   +D  D AYI+Y+SGTTGKPKG +  H       K 
Sbjct: 585 L---FIDDQTRFEEQASD---PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH 638
Query: 193 RHRAYPYDEDDREACNVF----FVWEMLRPLTQGIPMYVISDEVIYDPPRLT 240
                  D+D   + + +    F ++    +     + +  +  + D  RLT
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLT 690

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 22  QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
           Q  +T     V D  G   T+ QL   +D +  ++ +   +  S V V   +  +   ++
Sbjct: 12  QFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF 71
Query: 82  IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV-KLENDFL 140
           +A+ K+G  Y+P++    P  + ++++ AKPS++I   E+   +E  S+  + ++E+  L
Sbjct: 72  VALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKL 131
Query: 141 SKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           ++M    E+ H+V       DD  YI+++SGTTG+PKG+   H   +    W
Sbjct: 132 AEM--PYERTHSVKG-----DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW 176

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           P K+A+    G  I++ +L      V   L+ +G  VG  V    E+ +E  + Y+A  +
Sbjct: 16  PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVR 75
Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
           AGG YLPL T+Y    L+  + DA+P IV+      D  +R  +  +  +     + +  
Sbjct: 76  AGGVYLPLNTAYTLHELDYFITDAEPKIVV-----CDPSKRDGIAAIAAKVGATVETLGP 130
Query: 147 NEKLHNVDFPQV----------GLDDIAYIVYSSGTTGKPKGIVCPH 183
           + +    D              G DD+A I+Y+SGTTG+ KG    H
Sbjct: 131 DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           P  +A+    G  I++ +L      V   L+ +G  VG  V    E  +E  + Y+A  +
Sbjct: 16  PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
           AGG YLPL T+Y    L+  + DA+P IV+      D +   +                 
Sbjct: 76  AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                   +E    +D    G DD+A I+Y+SGTTG+  G +  H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           P  +A+    G  I++ +L      V   L+ +G  VG  V    E  +E  + Y+A  +
Sbjct: 16  PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
           AGG YLPL T+Y    L+  + DA+P IV+      D +   +                 
Sbjct: 76  AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                   +E    +D    G DD+A I+Y+SGTTG+  G +  H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           P  +A+    G  I++ +L      V   L+ +G  VG  V    E  +E  + Y+A  +
Sbjct: 16  PHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVR 75
Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL--------END 138
           AGG YLPL T+Y    L+  + DA+P IV+      D +   +                 
Sbjct: 76  AGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                   +E    +D    G DD+A I+Y+SGTTG+  G +  H
Sbjct: 136 LTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSXGAMLSH 177

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A  TPD+ A V  D + IT+KQL E +D +  ++ ++     S + V      E  I+++
Sbjct: 11  AAETPDQTAFVWRDAK-ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
              KAG  Y+P++ S P   ++ + +++   ++++       +  T +P   +  D L  
Sbjct: 70  GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA----TAVTVTDLPVRIVSEDNLKD 125
Query: 143 MISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           +   ++   N   P+  V  D+  YI+Y+SG+TG PKG+   +   V   KW
Sbjct: 126 IFFTHKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 15  LHYMFRNQAKRTPDKIAVVD--HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
           + +M R +A  +P   A V+   D R +T+ Q++   +     L   G   G  V +LM 
Sbjct: 4   IGWMLRQRATVSPRLQAYVEPSTDVR-MTYAQMNALANRCADVLTALGIAKGDRVALLMP 62
Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI---TKGEYMDRLERTS 129
             +E+   +    K G   +P+ T      +  +L D+   +VI        +D +   +
Sbjct: 63  NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA 122
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
            P   + +   +  ++E  +    D P V  G DD  +I+Y+SGTTG PKG+V  H  +V
Sbjct: 123 DPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE-SV 181
Query: 188 HA 189
           H+
Sbjct: 182 HS 183

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 23  AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
           A  TPD+ A V  D + IT+KQL E +D +  ++ ++     S + V      E  I+++
Sbjct: 11  AAETPDQTAFVWRDAK-ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 83  AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
              KAG  Y+P++ S P   ++ + +++   ++++       +  T +P   +  D L  
Sbjct: 70  GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA----TAVTVTDLPVRIVSEDNLKD 125
Query: 143 MISENEKLHNVDFPQ--VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           +   ++   N   P+  V  D+  YI+Y+SG+TG PKG+   +   V   KW
Sbjct: 126 IFFTHKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 15  LHYMFRNQAKRTPDKIAVVD--HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
           + +M R +A  +P   A V+   D R +T+ Q++   +     L   G   G  V +LM 
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVR-MTYAQMNALANRCADVLTALGIAKGDRVALLMP 76
Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI---TKGEYMDRLERTS 129
             +E+   +    K G   +P+ T      +  +L D+   +VI        +D +   +
Sbjct: 77  NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA 136
Query: 130 VPKVKLENDFLSKMISENEKLHNVDFPQV--GLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
            P   + +   +  ++E  +    D P V  G DD  +I+Y+SGTTG PKG+V  H  +V
Sbjct: 137 DPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE-SV 195
Query: 188 HA 189
           H+
Sbjct: 196 HS 197

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 14  ALH-YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
           +LH Y+F+N ++       +    G   T+  +   +  +       G      V +L+ 
Sbjct: 62  SLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLP 121
Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL------- 125
            C E+ +S++A    G         + PA +      +   ++IT+  Y+D++       
Sbjct: 122 NCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD 181
Query: 126 ----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGK 175
                     E   +P+  L    L++  +E  ++  +D  ++  DD+  + YSSGTTG 
Sbjct: 182 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEV--IDSVEISPDDVVALPYSSGTTGL 239
Query: 176 PKGIVCPHRGAV 187
           PKG++  H+G V
Sbjct: 240 PKGVMLTHKGLV 251

>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 11/185 (5%)
Query: 1   MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60
           M   +L D  A   +   F   A   P + A+ D  G S+ ++QL +  + +  YL+   
Sbjct: 15  MSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFG-SVDYRQLLDSAEQLSDYLLEHY 73
Query: 61  CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
              G  +GV  E   E     +AI  +G  YL ++   P A    +       +++    
Sbjct: 74  PQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD--- 130
Query: 121 YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIV 180
                  T  P   L    +  + +      +V  P    D IAYI +SSGTTG+PK I 
Sbjct: 131 ----CSTTPTPANGLPCVPVRHLPAAPA---SVARPCFAADQIAYINFSSGTTGRPKAIA 183
Query: 181 CPHRG 185
           C H G
Sbjct: 184 CTHAG 188

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 41  TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
           T+K+L+E  + V   +I    + G  + V ++R L      + I K+G  Y+P+E   P 
Sbjct: 57  TYKKLNETANQVANLII-HASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPN 115
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKV--KLENDFLSKMISENEKLHNVDFPQV 158
                +L D++ +         D +E     KV       F+  + +++      ++P+ 
Sbjct: 116 DRKSFLLRDSRAAXAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE- 174
Query: 159 GLDDIAYIVYSSGTTGKPKGI-VCPHRGAVHAYKW 192
            LD  AY++Y+SG+TG PKG+ V  H  +  +  W
Sbjct: 175 NLD--AYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15  LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
             +  I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V 
Sbjct: 64  SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
               ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
            R A
Sbjct: 175 QRAA 178

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15  LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
             +  I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V 
Sbjct: 64  SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
               ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
            R A
Sbjct: 175 QRAA 178

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15  LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
             +  I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V 
Sbjct: 64  SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
               ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
            R A
Sbjct: 175 QRAA 178

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15  LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
             +  I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V 
Sbjct: 64  SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
               ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
            R A
Sbjct: 175 QRAA 178

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 15  LHYMFRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVP 131
             +  I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V 
Sbjct: 64  SADVVIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA 114
Query: 132 KVKLEND------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCP 182
               ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P
Sbjct: 115 DAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIP 174
Query: 183 HRGA 186
            R A
Sbjct: 175 QRAA 178

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 28  DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87
           D IAV+D + R +++++L++  D +   L  QG   G T  V +    E  I++ A+ K 
Sbjct: 40  DSIAVIDGE-RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98
Query: 88  GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-----DRL-----ERTSVPKVKLEN 137
           G   +    S+  + L +     +P+++I   ++      D L     E +S+  V+L N
Sbjct: 99  GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN 158
Query: 138 DFLSKMISENEKLHNVDFPQVG--LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR 195
           D     + +       DF       D++AY   S GTTG PK I   H    ++ +    
Sbjct: 159 DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 196 AYPYDEDDREACNV 209
              + +  R  C +
Sbjct: 219 ICQFTQQTRYLCAI 232

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 21/180 (11%)
Query: 19  FRNQAKRTPDKIAV-VDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
            R  A R PD  A+ V   G  +T  +L    + V   L   G      V V+     + 
Sbjct: 8   LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--SVPKVKL 135
            I+ +A+H+ G           PALL   L  A+ + +I +GE    +      V     
Sbjct: 68  VIAILALHRLGA---------VPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIF 118
Query: 136 END------FLSKMISENEKLH---NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
           ++       FL  ++ + E       ++ PQ      A+I Y+SGTTG PK  + P R A
Sbjct: 119 QSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA 178

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 38  RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
            + T++QLD+    +   L  +G   G  V +L    L    +++    AG   +P+   
Sbjct: 39  ETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI--- 95
Query: 98  YPPALLESVLDDA-------KPSIVITKGEYMDRL---------ERTSVPKVKLENDFLS 141
           YPPA  E +LD A       KP IV+   +++ +          +   +P + LE+  L+
Sbjct: 96  YPPAQ-EKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIALESIELN 154
Query: 142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
           +  S            +  +DIA++ Y+SG+T  PKG+   H  
Sbjct: 155 RSSSWQPT-------SIKSNDIAFLQYTSGSTXHPKGVXVSHHN 191

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
           P  +A++  + R +++ +LD  +  + T L  +G   G T  V +    E+ I + A+ K
Sbjct: 44  PHSLAIICGE-RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLK 102
Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVI--------TKGEYMDRLERTSV-PKVKL-- 135
           AG   L    S+    L + +   +P ++I        +  +++D L   ++ P++ L  
Sbjct: 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML 162
Query: 136 ---ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
                DF      E      VDF     D++A+   S G+TG PK I   H
Sbjct: 163 NHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTH 213

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 15  LH-YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           LH Y+  N +  +     +   +G   T+  ++     V + L   G   G  + + +  
Sbjct: 24  LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83
Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE---RTSV 130
             E+ ++++     G           PA L      ++  ++IT+  Y ++++   R S 
Sbjct: 84  SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 131 PKVKLENDFLSKMI--SENEKLHNVDFPQVGL--DDIAYIVYSSGTTGKPKGIVCPHRGA 186
            KV   +      +  SE  +    + PQV +  DD+  + YSSGTTG PKG++  H+G 
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGL 203
Query: 187 V 187
           +
Sbjct: 204 I 204

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
           G   ++ +  E +  +G  L N G +V   + +  E C E+ I  IA    G G  P   
Sbjct: 50  GVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
            Y    L   L  +KP+IV +  + +D++   + +V  +K       + D+     L   
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
           I  N         F  V +D    +A I+ SSG+TG PKG+   H   V  +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
           G   ++ +  E +  +G  L N G +V   + +  E C E+ I  IA    G G  P   
Sbjct: 50  GVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
            Y    L   L  +KP+IV +  + +D++   + +V  +K       + D+     L   
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
           I  N         F  V +D    +A I+ SSG+TG PKG+   H   V  +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 34/191 (17%)
Query: 22  QAKRTPDKIAVVDH-----DGRSITFKQL-DEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
            A +TP+K A++        G SIT+K+L +E   +      + G   G TV V M    
Sbjct: 91  HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 76  EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE--------------- 120
           E  I+ +AI + G  +  +   +    L   ++D    +VIT  E               
Sbjct: 151 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 210
Query: 121 ----------YMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVY 168
                     ++    +T+ P V           +E +K +   +P   +D  D  +++Y
Sbjct: 211 DALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLY 269
Query: 169 SSGTTGKPKGI 179
           +SG+TG PKG+
Sbjct: 270 TSGSTGAPKGV 280

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 23  AKRTPDKIAVVDHDGR-------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
           A++  +K A++  + +       S  F ++ E T  + + +  +G   G  VGV +   +
Sbjct: 29  AEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI 88
Query: 76  EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR----LERTSVP 131
           ++  +  A+ +     +P+   Y    LE +L+D++ + ++      +     LE+T V 
Sbjct: 89  DYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVLEKTGVE 148
Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGL---DDIAYIVYSSGTTGKPKGIVCPH 183
           +V +    ++ + SE     + DF  V +   +D+A I Y+ GTTG PKG+   H
Sbjct: 149 RVFVVGGEVNSL-SEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTH 202

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L  ++R  A   PD+ A +  DG  +T +      + + + L+  G   G  V +L + C
Sbjct: 8   LADVYRRNAALFPDRTAFM-VDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC 66
Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----S 129
            E      A+   G   LP+        +  VL D  PS+V+   +Y D +         
Sbjct: 67  SEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG 126
Query: 130 VPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIV 180
           V K     D         +   +  F  P+ G  D   I++++   G+P+G +
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGAL 179

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 40  ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL----- 94
           + ++ L    +     L++     G  V ++ E   E+  ++ A   AG   +PL     
Sbjct: 49  LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 95  --ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS--VPKVKLENDFLSKMISENEKL 150
             +     A L+ +L   +P+ +IT  E++  +   +   P++ + +    K + E +  
Sbjct: 109 VGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVA 168
Query: 151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
                P    +DIAY+ Y+SG+T  P+G++  HR
Sbjct: 169 LQRPVP----NDIAYLQYTSGSTRFPRGVIITHR 198

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 37  GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
           G   ++ +  E +  +G  L N G +V   + +  E C E+ I  IA    G G  P   
Sbjct: 50  GVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Query: 97  SYPPALLESVLDDAKPSIVITKGEYMDRL--ERTSVPKVKL------ENDF-----LSKM 143
            Y    L   L  +KP+IV +  + +D++   + +V  +K       + D+     L   
Sbjct: 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169
Query: 144 ISENE--KLHNVDFPQVGLD---DIAYIVYSSGTTGKPKGIVCPHRGAVHAY 190
           I  N         F  V +D    +A I+ SSG+TG PKG+   H   V  +
Sbjct: 170 IKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 21/183 (11%)
Query: 17  YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
           Y+FR    R   K A +D  G S T+ +L+E      + L   G      + ++M   + 
Sbjct: 28  YLFRLNETRA-GKTAYIDDTG-STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 77  WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLE 136
             ++++    AG   +   T   PA    +L  +    VI  G  +  + +        E
Sbjct: 86  LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA---LESAE 142
Query: 137 NDFLSKMIS---ENEKLHNVDFPQV-------------GLDDIAYIVYSSGTTGKPKGIV 180
           +D    ++S   E+E      F ++             G DDIA+ +YSSG+TGKPKG V
Sbjct: 143 HDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTV 202
Query: 181 CPH 183
             H
Sbjct: 203 HTH 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-53
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-51
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	9e-51
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-50
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-48
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	1e-47
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-47
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-31
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-31
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-30
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-29
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-29
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-29
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-28
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-27
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-27
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-26
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-26
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	9e-26
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	8e-25
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-24
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-23
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-22
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-22
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-22
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-21
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-19
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-10
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-04

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  180 bits (459), Expect = 1e-53
 Identities = 57/241 (23%), Positives = 114/241 (47%), Gaps = 18/241 (7%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           +Y  +  +H +F  Q  + P+ +A+V  +   +T+ +L+   + +    I +G    + V
Sbjct: 34  EYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTLV 92

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G++ME+ ++  I  +A+ KAGG Y+P++  YP   ++ +LDD++  +++T+   +  +  
Sbjct: 93  GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 152

Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
                     +  +    +  +  N+        D+AY++Y+SGTTG PKG +  H+G  
Sbjct: 153 IQFNGQVEIFEEDT---IKIREGTNLH-VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS 208

Query: 188 HAYKWRHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPR 238
           +   +   +    E DR    +           VWEM   L  G  +Y+I  + I D  +
Sbjct: 209 NLKVFFENSLNVTEKDR----IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264

Query: 239 L 239
            
Sbjct: 265 F 265

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  173 bits (441), Expect = 3e-51
 Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 25/237 (10%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG---STVGVLM 71
           L +  +  A+  P   A     G+S+T+++L E +D     +  +    G   S + V  
Sbjct: 3   LLHAIQTHAETYPQTDAFR-SQGQSLTYQELWEQSDRAAAAIQKRI--SGEKKSPILVYG 59

Query: 72  ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
                  +S++   KAG  Y+P++ S P   +  +++ +   ++I             + 
Sbjct: 60  HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQ 119

Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
            V  E    ++  S ++         V   +  YI+Y+SG+TG PKG+            
Sbjct: 120 TVSAEELLENEGGSVSQD------QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTD 173

Query: 192 WRHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           W    +P                      V ++   L  G  ++ ++ + +  P  L
Sbjct: 174 WICADFPVSGGKI----FLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL 226

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  177 bits (450), Expect = 9e-51
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 12  EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
              L Y F+      PD  A+  + G+++++++LDE  + +   L   G   GS V +  
Sbjct: 463 TKPLTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYT 521

Query: 72  ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
           +R LE  I  + + KAG  YLP++   P   +  +L D+  + ++T  E  ++       
Sbjct: 522 KRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYT 581

Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
              L  D  +      E+  +     +  +D AYI+Y+SGTTGKPKG +  H        
Sbjct: 582 GTTLFIDDQT---RFEEQASDPA-TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQG-LV 636

Query: 192 WRHRAYPYDEDDREACNV-----FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
                  + + D            F ++    +     + +  +  + D  RL
Sbjct: 637 KHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  170 bits (433), Expect = 4e-50
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 22/236 (9%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
           L       A  TPD+ A V      IT+KQL E +D +  ++ ++       S + V   
Sbjct: 3   LLEQIEKWAAETPDQTAFV-WRDAKITYKQLKEDSDALAHWISSEY--PDDRSPIMVYGH 59

Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPK 132
              E  I+++   KAG  Y+P++ S P   ++ + +++   ++++       +    V  
Sbjct: 60  MQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV--TVTDLPVRI 117

Query: 133 VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW 192
           V  +N        +     N +   V  D+  YI+Y+SG+TG PKG+   +   V   KW
Sbjct: 118 VSEDNLKDIFFTHKGNT-PNPE-HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW 175

Query: 193 RHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
               +                       V ++   L  G  ++ I  ++I  P  L
Sbjct: 176 AVEDFNLQTGQV----FLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL 227

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  165 bits (420), Expect = 3e-48
 Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 22/236 (9%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           +       A+   D        G   T+ QL   +D +  ++ +   +  S V V   + 
Sbjct: 6   MIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT 64

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            +   +++A+ K+G  Y+P++    P  + ++++ AKPS++I   E+   +E  S+  + 
Sbjct: 65  YDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSL- 123

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-- 192
                +                 V  DD  YI+++SGTTG+PKG+   H   +    W  
Sbjct: 124 ---SEIESAKLAEMPYERT--HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI 178

Query: 193 RHRAYPYDEDDREACNV---------FFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
              A+   +  +    +           V      L  G  ++ +  E++ D  +L
Sbjct: 179 EDAAFDVPKQPQ----MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  164 bits (418), Expect = 1e-47
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 32/255 (12%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHD---------GRSITFKQLDEWTDIVGTYLIN 58
            Y +     +     AK  P+  AV                 T+K+L+E  + V   +I+
Sbjct: 15  QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH 74

Query: 59  QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
              + G  + V ++R L      + I K+G  Y+P+E   P      +L D++ ++    
Sbjct: 75  AS-LHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVC 133

Query: 119 GEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
               D +E     KV    +         +   ++       +  AY++Y+SG+TG PKG
Sbjct: 134 DNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDIL-NNYPENLDAYLLYTSGSTGTPKG 192

Query: 179 IVCPHRGAVHAYKWRHR--------AYPYDEDDREACNV---------FFVWEMLRPLTQ 221
           +               +        +       +                + EM      
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK----FLCLASRAFDVHIGEMFLAWRF 248

Query: 222 GIPMYVISDEVIYDP 236
           G+         + D 
Sbjct: 249 GLCAVTGERLSMLDD 263

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  164 bits (418), Expect = 2e-47
 Identities = 52/237 (21%), Positives = 81/237 (34%), Gaps = 18/237 (7%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           D  A   +   F   A   P + A+      S+ ++QL +  + +  YL+      G  +
Sbjct: 22  DLYAHPTVVARFSEMAALHPHREAIR-DRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           GV  E   E     +AI  +G  YL ++   P A    +       +++           
Sbjct: 81  GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG 140

Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
                  +    L    +   +      P    D IAYI +SSGTTG+PK I C H G  
Sbjct: 141 LPC----VPVRHLPAAPASVAR------PCFAADQIAYINFSSGTTGRPKAIACTHAGIT 190

Query: 188 HAYKWRHRAYPYDEDDR--EACNVFF---VWEMLRPLTQGIPMYVISDEVIYDPPRL 239
                      +    R      + F     E+   L  G    V++D    DP  L
Sbjct: 191 R-LCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCC-VLNDLGPLDPGVL 245

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  118 bits (298), Expect = 6e-31
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L  ++R  A   PD+ A +  DG  +T +      + + + L+  G   G  V +L + C
Sbjct: 8   LADVYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC 66

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-----TS 129
            E      A+   G   LP+        +  VL D  PS+V+   +Y D +         
Sbjct: 67  SEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG 126

Query: 130 VPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
           V K     D         +   +  F  P+ G  D   I++++   G+P+G +      +
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL 186

Query: 188 HAYKWRHRAYPYDEDDR 204
            A      A+   E D 
Sbjct: 187 IAQSSLVDAWRLTEADV 203

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  118 bits (298), Expect = 7e-31
 Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 12/199 (6%)

Query: 15  LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           + +M R +A  +P   A V+      +T+ Q++   +     L   G   G  V +LM  
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVP 131
            +E+   +    K G   +P+ T      +  +L D+   +VI        ++  R    
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD 137

Query: 132 KVKL------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRG 185
                      +    ++ S       V+    G DD  +I+Y+SGTTG PKG+V  H  
Sbjct: 138 PPGTVTDWIGADSLAERLRSAAADEPAVE---CGGDDNLFIMYTSGTTGHPKGVVHTHES 194

Query: 186 AVHAYKWRHRAYPYDEDDR 204
              A             DR
Sbjct: 195 VHSAASSWASTIDVRYRDR 213

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  117 bits (296), Expect = 1e-30
 Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 22  QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
                P K+A+    G  I++ +L      V   L+ +G  VG  V    E+ +E  + Y
Sbjct: 11  DKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLY 70

Query: 82  IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSVPKVKLEN 137
           +A  +AGG YLPL T+Y    L+  + DA+P IV+      D +     +       L  
Sbjct: 71  LATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP 130

Query: 138 D----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR 193
           D            +E    +D    G DD+A I+Y+SGTTG+ KG +  H          
Sbjct: 131 DGRGSLTDAAAGASEAFATID---RGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTL 187

Query: 194 HRAYPYDEDDR 204
              + +  DD 
Sbjct: 188 VDYWRFTPDDV 198

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  114 bits (289), Expect = 1e-29
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 22/234 (9%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           LH            K  +++   G   T+  ++     V + L   G   G  + + +  
Sbjct: 24  LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTS 129
             E+ ++++     G           PA L      ++  ++IT+  Y +++      + 
Sbjct: 84  SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143

Query: 130 VPKVKLEND-----FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
           V  + +++        S++   +E  +      +  DD+  + YSSGTTG PKG++  H+
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHK 201

Query: 185 G----AVHAYKWRHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
           G            +    +  +D   C +  F        ML  L  G P+ ++
Sbjct: 202 GLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  115 bits (290), Expect = 2e-29
 Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 27/239 (11%)

Query: 16  HYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
            Y+F+N       K  +++   G   T+  +   +  +       G      V +L+  C
Sbjct: 65  DYIFQN-ISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC 123

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSV 130
            E+ +S++A    G         + PA +      +   ++IT+  Y+D++        V
Sbjct: 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGV 183

Query: 131 PKVKLEND-----------FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGI 179
             V ++++           F     S  E    +D  ++  DD+  + YSSGTTG PKG+
Sbjct: 184 VIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGV 243

Query: 180 VCPHRGAV----HAYKWRHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
           +  H+G V          +    +  DD   C +  F        ML  L  G  + ++
Sbjct: 244 MLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  113 bits (285), Expect = 5e-29
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 15/204 (7%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
                    +    K A +D D  S T+ +L+E      + L   G      + ++M   
Sbjct: 25  FAAYLFRLNETRAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDT 83

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
           +   ++++    AG   +   T   PA    +L  +    VI  G  +  + +       
Sbjct: 84  VALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH 143

Query: 135 LENDFLSKMISENEKLHNVDF-------------PQVGLDDIAYIVYSSGTTGKPKGIVC 181
                +     E+E      F                G DDIA+ +YSSG+TGKPKG V 
Sbjct: 144 DGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVH 203

Query: 182 PHRGAV-HAYKWRHRAYPYDEDDR 204
            H      A  +        E+D 
Sbjct: 204 THANLYWTAELYAKPILGIAENDV 227

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  111 bits (281), Expect = 1e-28
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 16/190 (8%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
              +         D+ A+     RS+T+ +L          +          V V     
Sbjct: 25  FPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIGG-----AGRVAVWATPA 78

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
           +E  ++ +A   AG   +PL        L  +L D+ PS+V+   +        ++ +V 
Sbjct: 79  METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVD 138

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
           ++                V        D A +VY+SGTTG PKG V P R          
Sbjct: 139 VDVRARG----------AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALA 188

Query: 195 RAYPYDEDDR 204
            A+ +  +D 
Sbjct: 189 DAWQWTGEDV 198

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  108 bits (272), Expect = 3e-27
 Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 21/187 (11%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           L       A++  +K A++  +         S+ F ++ E T  + + +  +G   G  V
Sbjct: 21  LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHV 80

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL-- 125
           GV +   +++ ++  A+ +     +P+   Y    LE +L+D++ + ++      +    
Sbjct: 81  GVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140

Query: 126 --ERTSVPKVKL---ENDFLSKMISENEKLHNVDFPQV---GLDDIAYIVYSSGTTGKPK 177
             E+T V +V +   E + LS+++    +    DF  V     +D+A I Y+ GTTG PK
Sbjct: 141 VLEKTGVERVFVVGGEVNSLSEVMDSGSE----DFENVKVNPEEDVALIPYTGGTTGMPK 196

Query: 178 GIVCPHR 184
           G++  H 
Sbjct: 197 GVMLTHF 203

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  107 bits (270), Expect = 4e-27
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 11/222 (4%)

Query: 18  MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
           M R  A R PD  A+     G  +T  +L    + V   L   G      V V+     +
Sbjct: 7   MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66

Query: 77  WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY--MDRLERTSVPKVK 134
             I+ +A+H+ G     L      A L  ++   + +  +        D + ++      
Sbjct: 67  VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARI 126

Query: 135 LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW-- 192
           +    L +          ++ PQ      A+I Y+SGTTG PK  + P R A     +  
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186

Query: 193 RHRAYPYDEDDREACNV-FF-----VWEMLRPLTQGIPMYVI 228
                 +   +     +  +        ++  L       V+
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  106 bits (266), Expect = 2e-26
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 22/208 (10%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           L +    QA++    IA+ D    S T++ L     ++   L        S VG+ ++  
Sbjct: 3   LDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAYQ---QSRVGLYIDNS 58

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER------- 127
           ++  I   A   A      + T   P  + + +      ++        R  +       
Sbjct: 59  IQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI 118

Query: 128 -----------TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP 176
                           + ++ D  ++ +   E   N+      LDDIA I+++SGTTG  
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178

Query: 177 KGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
           K +    R    +      +  +D D  
Sbjct: 179 KAVPQTFRNHYASAIGCKESLGFDRDTN 206

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  105 bits (264), Expect = 3e-26
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 11/197 (5%)

Query: 18  MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           + R++A +  D+IA+        ++++LD   D +       G      V V +    E+
Sbjct: 30  LLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
                A+ + G   +    S+  + +    + A+ +  I    Y     R+   +V+ + 
Sbjct: 89  FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148

Query: 138 DFLSKMISENEKLHNVDF----------PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
             L  +I   E    +            P+V   D+A++  S G+TG  K I   H   +
Sbjct: 149 PTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208

Query: 188 HAYKWRHRAYPYDEDDR 204
           ++ K        D    
Sbjct: 209 YSLKRSVEVCWLDHSTV 225

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  104 bits (261), Expect = 9e-26
 Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 31/243 (12%)

Query: 16  HYMFRN--QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
             + +   +    P  IA  D H   +IT+ +  E +  +   +   G      + V  E
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83

Query: 73  RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERT 128
             L++ +  +     G    P    Y    L + ++ ++P++V    + + ++    ++ 
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143

Query: 129 SVPK--------------VKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTG 174
            + +                +     S +     +   V         IA I+ SSG+TG
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 203

Query: 175 KPKGIVCPHRG----AVHAYKWRHRAYPYDEDDREAC-----NVFFVWEMLRPLTQGIPM 225
            PKG+  PHR       HA            D          + F ++  L  L  G  +
Sbjct: 204 LPKGVALPHRTACVRFSHARDPIFGNQ-IIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262

Query: 226 YVI 228
            ++
Sbjct: 263 VLM 265

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  101 bits (254), Expect = 8e-25
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 15  LHYMFRNQAKRTPD--KIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
                R   +R      IA  +   G   ++ +  E +  +G  L N G +V   + +  
Sbjct: 25  AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCS 84

Query: 72  ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL------ 125
           E C E+ I  IA    G G  P    Y    L   L  +KP+IV +  + +D++      
Sbjct: 85  ENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT 144

Query: 126 -----------ERTSVPKVKLENDFLSKMISENEKLHNVDFPQV-GLDDIAYIVYSSGTT 173
                       +      +  + F+ +      +  +    +V   + +A I+ SSG+T
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGST 204

Query: 174 GKPKGIVCPHRG----AVHAYKWRHRAYPYDED 202
           G PKG+   H        HA    +        
Sbjct: 205 GLPKGVQLTHENIVTRFSHARDPIYGNQVSPGT 237

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  101 bits (253), Expect = 1e-24
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 15/201 (7%)

Query: 18  MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
           +     +  P  +A++    R +++ +LD  +  + T L  +G   G T  V +    E+
Sbjct: 35  ILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93

Query: 78  TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY-------MDRLERTSV 130
            I + A+ KAG   L    S+    L + +   +P ++I   ++                
Sbjct: 94  YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN 153

Query: 131 PKVKL-------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPH 183
              ++         DF      E      VDF     D++A+   S G+TG PK I   H
Sbjct: 154 LSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTH 213

Query: 184 RGAVHAYKWRHRAYPYDEDDR 204
               ++ +        + + R
Sbjct: 214 NDYDYSVRASAEICGLNSNTR 234

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 96.5 bits (241), Expect = 4e-23
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 13/190 (6%)

Query: 27  PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
            D IAV+D   R +++++L++  D +   L  QG   G T  V +    E  I++ A+ K
Sbjct: 39  SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLK 97

Query: 87  AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISE 146
            G   +    S+  + L +     +P+++I   ++        +     E+  +  +   
Sbjct: 98  LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157

Query: 147 NEK------------LHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH 194
           N+               +        D++AY   S GTTG PK I   H    ++ +   
Sbjct: 158 NDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217

Query: 195 RAYPYDEDDR 204
               + +  R
Sbjct: 218 EICQFTQQTR 227

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 22/194 (11%)

Query: 20  RNQAKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERC 74
             +A + P   A+  V+  G      F++L E +      L     +  G  V V++ R 
Sbjct: 50  MEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
            EW +  +   +AG  ++P         +   L  +K   ++   E +  ++   +  P 
Sbjct: 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS 169

Query: 133 VKL-----------ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVC 181
           +++             +F   +   +   H V+    G  + + I ++SGT+G PK    
Sbjct: 170 LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVE---TGSQEASAIYFTSGTSGLPKMAEH 226

Query: 182 PHRG-AVHAYKWRH 194
            +    + A     
Sbjct: 227 SYSSLGLKAKMDAG 240

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 44/247 (17%), Positives = 102/247 (41%), Gaps = 25/247 (10%)

Query: 18  MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
           + R +A  +P+K +          ++T++QLD+    +   L  +G   G  V +L    
Sbjct: 16  VVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG 75

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMDRLERT 128
           L    +++    AG   +P+   YPPA        + ++ ++KP IV+   +++ +    
Sbjct: 76  LPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD 132

Query: 129 SVPKVKLENDFLSKMISENEKLHNVDF--PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGA 186
            +          +  +   E   +  +    +  +DIA++ Y+SG+T  PKG++  H   
Sbjct: 133 ELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNL 192

Query: 187 VHAYKWRHRAYPYDEDDREA------CNVFFVWEMLRPLTQGIPMYVIS-DEVIYDPPRL 239
           +        ++  +++           ++  +  +L P+  GI   ++S    + +P   
Sbjct: 193 LDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLS- 251

Query: 240 TSGWVRL 246
              W++ 
Sbjct: 252 ---WLKH 255

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 92.1 bits (229), Expect = 1e-21
 Identities = 59/263 (22%), Positives = 94/263 (35%), Gaps = 48/263 (18%)

Query: 18  MFRNQAKRTPDKIAVV------DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
             R  A+  P   A        D DG   ++T+ QL   T  V   L   G   G  V +
Sbjct: 29  ALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVI 87

Query: 70  LMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMD 123
              + LE+ ++++   +AG   +PL     P         +SVL D+ P  ++T    +D
Sbjct: 88  SAPQGLEYVVAFLGALQAGRIAVPL---SVPQGGVTDERSDSVLSDSSPVAILTTSSAVD 144

Query: 124 RLER-------TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKP 176
            + +        S P + +E D L              F +      AY+ Y+SG+T  P
Sbjct: 145 DVVQHVARRPGESPPSI-IEVDLLDLDAPNG-----YTFKEDEYPSTAYLQYTSGSTRTP 198

Query: 177 KGIVCPHRGAVHAYKWRHRAYPYDEDDREACN-VFFVW-----------EMLRPLTQGIP 224
            G+V  H+     ++     Y  D D     N     W            +  P+  G P
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258

Query: 225 MYVIS-DEVIYDPPRLTSGWVRL 246
             + S    +  P R    W+ L
Sbjct: 259 AVLTSPVSFLQRPAR----WMHL 277

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 31/189 (16%), Positives = 72/189 (38%), Gaps = 21/189 (11%)

Query: 23  AKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
           A+ +P+K+A+   D  G  +  TFK L  ++D    + +  G   G  V + ++   ++ 
Sbjct: 66  ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125

Query: 79  ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRLE--RTSVPKVK 134
              + +HK G   +P         +   ++ A   +++   + +  ++++        + 
Sbjct: 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIP 185

Query: 135 LEN------------DFLSKMISENEKLHNVDFP-QVGLDDIAYIVYSSGTTGKPKGIVC 181
           L+             DF  ++   +              +DI  + +SSGT G PK +  
Sbjct: 186 LKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEH 245

Query: 182 PHRGAVHAY 190
            +   +   
Sbjct: 246 DNTYPLGHI 254

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 17/178 (9%)

Query: 27  PDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM---ERCLEWTIS 80
             K  V      +    T+ ++ +    +   L   G  VG  V  L     R LE   +
Sbjct: 32  GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE---A 88

Query: 81  YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER-----TSVPKVKL 135
           Y A+   G           P  +  +L+ A+  +++     +  +E       +V    +
Sbjct: 89  YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVV 148

Query: 136 ENDFLSKMISENEKLHNVDFPQVGLD--DIAYIVYSSGTTGKPKGIVCPHRGAV-HAY 190
            ++   +     E+    +   V +       + Y++GTTG PKG+V  HR  V H+ 
Sbjct: 149 MDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDR 204
           +  D    +  S GTTG PK +V           WR   Y +     
Sbjct: 88  LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRP 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.6
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.48
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.42
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.4
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.35
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	95.85
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	95.79
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	95.65
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	93.17
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	92.8
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	92.08
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	90.65
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	89.85
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	89.62
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	89.46
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	88.59
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	87.32
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	87.18
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	84.62
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	84.59
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	83.98
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	83.72
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	82.8
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	82.7
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	82.57
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	81.94

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.9e-39  Score=278.81  Aligned_cols=239  Identities=20%  Similarity=0.286  Sum_probs=190.5

Q ss_pred             CCCcCchhhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550           5 NLSDYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA   83 (251)
Q Consensus         5 ~~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a   83 (251)
                      ...+.+.+.++.++|.+.++++|+++|+++.+ ++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++|
T Consensus         8 ~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   87 (517)
T 3r44_A            8 HVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYG   87 (517)
T ss_dssp             ----CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHH
Confidence            34556778899999999999999999998642 23899999999999999999999999999999999999999999999


Q ss_pred             HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CC-eeeec--chhhhhhhhhhhcccCCCC
Q psy4550          84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VP-KVKLE--NDFLSKMISENEKLHNVDF  155 (251)
Q Consensus        84 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~  155 (251)
                      |+++|++++|++|..+.+++.+++++++++++|+++...+.+....     .. .+...  ..+.....   ........
T Consensus        88 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  164 (517)
T 3r44_A           88 AAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR---SAAADEPA  164 (517)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHH---HCCCCCCC
T ss_pred             HHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhh---ccCcCCCC
Confidence            9999999999999999999999999999999999987765543221     11 11111  11111111   11112334


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~  230 (251)
                      ....++++++|+|||||||.||||++||+++.+.+......+++.++|++++.+|+     ....+.++..|+++++.+.
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~  244 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ  244 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence            45678999999999999999999999999999999999999999999999875543     2233455559999999987


Q ss_pred             ccccCchHHHhhhhccccC
Q psy4550         231 EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt  249 (251)
                         +++..+++.|+++++|
T Consensus       245 ---~~~~~~~~~i~~~~~t  260 (517)
T 3r44_A          245 ---FDATKVWSLIVEERVC  260 (517)
T ss_dssp             ---CCHHHHHHHHHHTTCC
T ss_pred             ---CCHHHHHHHHHHhCCe
Confidence               9999999999999997

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=8.2e-39  Score=278.45  Aligned_cols=234  Identities=25%  Similarity=0.473  Sum_probs=188.8

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ++...++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|
T Consensus        35 ~~~~~~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G  113 (563)
T 1amu_A           35 YPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAG  113 (563)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHHCCCCeEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            44457899999999999999999985 67789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCC--eeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEE
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP--KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYI  166 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  166 (251)
                      ++++|++|.++.+++.+++++++++++|++++..+........  .........   ..   ...........++++++|
T Consensus       114 av~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~d~a~i  187 (563)
T 1amu_A          114 GAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTI---KI---REGTNLHVPSKSTDLAYV  187 (563)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTT---TT---SCCSCCCCCCCTTSEEEE
T ss_pred             CEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhh---cc---ccCccCCCCCCCCCeEEE
Confidence            9999999999999999999999999999998765544332211  111111100   00   001112234567899999


Q ss_pred             EeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHh
Q psy4550         167 VYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTS  241 (251)
Q Consensus       167 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~  241 (251)
                      +|||||||.||||++||+++.+.+......+++.++|++++.++     ..+.++.++..|+++++.+....+++..+++
T Consensus       188 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~  267 (563)
T 1amu_A          188 IYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQ  267 (563)
T ss_dssp             EEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHH
T ss_pred             EECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHH
Confidence            99999999999999999999999888888899999999876443     3456788999999999988644579999999


Q ss_pred             hhhccccC
Q psy4550         242 GWVRLPLN  249 (251)
Q Consensus       242 ~i~~~~vt  249 (251)
                      .|+++++|
T Consensus       268 ~i~~~~~t  275 (563)
T 1amu_A          268 YINQKEIT  275 (563)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCc
Confidence            99999987

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=7.4e-39  Score=275.53  Aligned_cols=232  Identities=18%  Similarity=0.215  Sum_probs=184.1

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      |+++.++|.+.++++|+++|+.+.+ ++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   80 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV   80 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence            4589999999999999999998632 678999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEE--ccchhhhh-hccCCCeeeecchhhhhhhhhhh--cccCCCCCCCCCCCeEE
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRL-ERTSVPKVKLENDFLSKMISENE--KLHNVDFPQVGLDDIAY  165 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  165 (251)
                      ++|++|..+.+++.+++++++++++++  +++..+.+ .......+..   +.+.......  ...........++++++
T Consensus        81 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  157 (504)
T 1t5h_X           81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF---LGDLVRDGEPYSYGPPIEDPQREPAQPAF  157 (504)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE---GGGTEETTEECCCSCCCCCCCCCTTSEEE
T ss_pred             EEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE---ecchhhcCcccccCCccCCCCCCCCCeEE
Confidence            999999999999999999999999999  76655444 2211111111   1111110000  00111123456789999


Q ss_pred             EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCC--CCCChhhhhHHHH------HHHHHhhhcCccEEEecCccccCch
Q psy4550         166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPY--DEDDREACNVFFV------WEMLRPLTQGIPMYVISDEVIYDPP  237 (251)
Q Consensus       166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~~~~~~~~~  237 (251)
                      |+|||||||.||||+++|+++.+.+......+++  .++|++++.+|++      ..++.++..|+++++.+.   ++|.
T Consensus       158 i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~  234 (504)
T 1t5h_X          158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE---FRPV  234 (504)
T ss_dssp             EEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS---CCHH
T ss_pred             EEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC---CCHH
Confidence            9999999999999999999999999888888888  7888887755432      346788999999999987   9999


Q ss_pred             HHHhhhhccccC
Q psy4550         238 RLTSGWVRLPLN  249 (251)
Q Consensus       238 ~~~~~i~~~~vt  249 (251)
                      .+++.|+++++|
T Consensus       235 ~~~~~i~~~~~t  246 (504)
T 1t5h_X          235 DALQLVQQEQVT  246 (504)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCe
Confidence            999999999998

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.9e-39  Score=278.34  Aligned_cols=233  Identities=18%  Similarity=0.252  Sum_probs=190.9

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA   83 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a   83 (251)
                      +..++.++|.+.++++|+++|+++.++       +++||+||.++++++|.+|+++|+++||+|+++++|+++++++++|
T Consensus        17 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   96 (549)
T 3g7s_A           17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYA   96 (549)
T ss_dssp             CCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            456899999999999999999986542       7899999999999999999999999999999999999999999999


Q ss_pred             HHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecc----hhhhhhhhhhhcccCCCC
Q psy4550          84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEN----DFLSKMISENEKLHNVDF  155 (251)
Q Consensus        84 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~  155 (251)
                      |+++|++++|++|..+.+++.+++++++++++|+++...+.+...    ....+....    .+........   .....
T Consensus        97 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  173 (549)
T 3g7s_A           97 LWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGS---EDFEN  173 (549)
T ss_dssp             HHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSC---SCCCC
T ss_pred             HHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCc---ccccc
Confidence            999999999999999999999999999999999998876554332    222222111    1111111111   11122


Q ss_pred             CCCC-CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEec
Q psy4550         156 PQVG-LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVIS  229 (251)
Q Consensus       156 ~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~  229 (251)
                      .... ++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|+     +..++.++..|+++++.+
T Consensus       174 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~  253 (549)
T 3g7s_A          174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG  253 (549)
T ss_dssp             CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES
T ss_pred             ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC
Confidence            2233 3899999999999999999999999999999999999999999998775543     233677899999999998


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .   +++..+++.|+++++|
T Consensus       254 ~---~~~~~~~~~i~~~~~t  270 (549)
T 3g7s_A          254 M---FNQEMLAENIEKYKGT  270 (549)
T ss_dssp             S---CCHHHHHHHHHHTTCC
T ss_pred             C---CCHHHHHHHHHHhCCe
Confidence            7   9999999999999997

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.1e-38  Score=276.35  Aligned_cols=238  Identities=17%  Similarity=0.284  Sum_probs=192.9

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      .+|...++.++|.+.++++|+++|+++. +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||++
T Consensus        17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~   96 (536)
T 3ni2_A           17 YIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH   96 (536)
T ss_dssp             CCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence            3455578999999999999999999874 468899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecch-----hhhhhhhhhhcccCCCCCC
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEND-----FLSKMISENEKLHNVDFPQ  157 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  157 (251)
                      +|++++|++|..+.+++.+++++++++++|+++...+.+...    ....+..+..     .........  ........
T Consensus        97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  174 (536)
T 3ni2_A           97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQAD--ENEAPQVD  174 (536)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSC--GGGCCCCC
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhcc--ccccccCC
Confidence            999999999999999999999999999999998776554432    2222222210     011111111  11123345


Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH------HHHHHhhhcCccEEE
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV------WEMLRPLTQGIPMYV  227 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~  227 (251)
                      ..++++++|+|||||||.||||+++|+++.+.+.....    .+++.++|++++.+|++      ..++.++..|+++++
T Consensus       175 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~  254 (536)
T 3ni2_A          175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILI  254 (536)
T ss_dssp             CCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEE
T ss_pred             CCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEE
Confidence            67899999999999999999999999999988776554    44678889887755432      345788999999999


Q ss_pred             ecCccccCchHHHhhhhccccCC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .+.   +++..+++.|+++++|.
T Consensus       255 ~~~---~~~~~~~~~i~~~~~t~  274 (536)
T 3ni2_A          255 MPK---FEIGSLLGLIEKYKVSI  274 (536)
T ss_dssp             CSS---CCHHHHHHHHHHHTCCE
T ss_pred             cCC---CCHHHHHHHHHHhCCeE
Confidence            997   99999999999999973

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=8.4e-39  Score=280.86  Aligned_cols=231  Identities=23%  Similarity=0.242  Sum_probs=188.4

Q ss_pred             CCcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550           6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus         6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      ..+.+...++.++|.++++++|+++|+++ .++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+
T Consensus        20 ~~~~~~~~tl~~~~~~~a~~~Pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail   98 (620)
T 4dg8_A           20 LLDLYAHPTVVARFSEMAALHPHREAIRD-RFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL   98 (620)
T ss_dssp             TTSGGGSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHhCCCCeEEEc-CCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            34455677999999999999999999985 66789999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEE
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAY  165 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (251)
                      ++|++++|++|..+.+++.+++++++++++++++........  ......        ................++++++
T Consensus        99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~d~a~  168 (620)
T 4dg8_A           99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPV--------RHLPAAPASVARPCFAADQIAY  168 (620)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEG--------GGCCCCCCCSSCCCCCTTSEEE
T ss_pred             HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeee--------ccCCcCCccccCCCCCCCCeEE
Confidence            999999999999999999999999999999976554332211  111110        0001111112233456799999


Q ss_pred             EEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHH
Q psy4550         166 IVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLT  240 (251)
Q Consensus       166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~  240 (251)
                      |+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+++     .+.++.++..|+++++.+. ..++|..++
T Consensus       169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~  246 (620)
T 4dg8_A          169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL-GPLDPGVLR  246 (620)
T ss_dssp             EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS-SSCCHHHHH
T ss_pred             EEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc-ccCCHHHHH
Confidence            999999999999999999999877655 456788899998775533     4568999999999999742 258999999


Q ss_pred             hhhhccccC
Q psy4550         241 SGWVRLPLN  249 (251)
Q Consensus       241 ~~i~~~~vt  249 (251)
                      +.|+++++|
T Consensus       247 ~~i~~~~vt  255 (620)
T 4dg8_A          247 QLIGERGAD  255 (620)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHHhCCc
Confidence            999999997

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.4e-38  Score=274.15  Aligned_cols=234  Identities=20%  Similarity=0.256  Sum_probs=185.8

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~   83 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL   83 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEE-CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            35899999999999999999985 77899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecchh--hhhhhhhhhcccCCCCCCCCCCCe
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LENDF--LSKMISENEKLHNVDFPQVGLDDI  163 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  163 (251)
                      +|++|..+.+++.+++++++++++|++++..+.+...     ....+. .....  ....... ............++++
T Consensus        84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~  162 (509)
T 3ivr_A           84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDL-ASDTPFSAPEFGAADG  162 (509)
T ss_dssp             EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGT-CCCSCCCCCCCCTTSE
T ss_pred             EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhc-cCCCCCCcCCCCcccc
Confidence            9999999999999999999999999998866542211     111111 11100  0000000 1111123345678899


Q ss_pred             EEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCccccCchH
Q psy4550         164 AYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDEVIYDPPR  238 (251)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~~~~~~~~  238 (251)
                      ++|+|||||||.||||+++|+++...+......+++.++|++++.+|++     ...+.++..|++.++...   +++..
T Consensus       163 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~---~~~~~  239 (509)
T 3ivr_A          163 FVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK---FDPAQ  239 (509)
T ss_dssp             EEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS---CCHHH
T ss_pred             EEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc---cCHHH
Confidence            9999999999999999999999999999999999999999998765432     234454555555666565   99999


Q ss_pred             HHhhhhccccCC
Q psy4550         239 LTSGWVRLPLNG  250 (251)
Q Consensus       239 ~~~~i~~~~vt~  250 (251)
                      +++.|+++++|.
T Consensus       240 ~~~~i~~~~~t~  251 (509)
T 3ivr_A          240 AARDIEAHKVTV  251 (509)
T ss_dssp             HHHHHHHHTCCE
T ss_pred             HHHHHHHHCCcE
Confidence            999999999983

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.2e-38  Score=276.25  Aligned_cols=233  Identities=16%  Similarity=0.152  Sum_probs=189.1

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|.+.++++|+++|+++ .++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~  102 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence            35899999999999999999985 67789999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhhc-c-CCCeeeecch--hhhhhhhhhhcccCCCCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLER-T-SVPKVKLEND--FLSKMISENEKLHNVDFPQVG  159 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  159 (251)
                      +|++|..+.+++.++++.++++++|++++...        .+.. . ....+.....  .+.......  ..........
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  180 (539)
T 1mdb_A          103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH--TEPVKLPEVK  180 (539)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC--CCCCCCCCCC
T ss_pred             ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcc--ccccccCCCC
Confidence            99999999999999999999999999875321        1111 0 1112221111  000111000  0111223456


Q ss_pred             CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHH-----H--HHHHhhhcCccEEEecCcc
Q psy4550         160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFV-----W--EMLRPLTQGIPMYVISDEV  232 (251)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~G~~~v~~~~~~  232 (251)
                      ++++++|+|||||||.||||+++|+++.+.+......++++++|++++.+|++     .  .++.++..|+++++.+.  
T Consensus       181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~--  258 (539)
T 1mdb_A          181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS--  258 (539)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS--
T ss_pred             cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCC--
Confidence            78999999999999999999999999999998888888999999987755431     1  47889999999999987  


Q ss_pred             ccCchHHHhhhhccccCC
Q psy4550         233 IYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       233 ~~~~~~~~~~i~~~~vt~  250 (251)
                       +++..+++.|+++++|.
T Consensus       259 -~~~~~~~~~i~~~~~t~  275 (539)
T 1mdb_A          259 -PSPDDAFPLIEREKVTI  275 (539)
T ss_dssp             -SSHHHHHHHHHHHTCSE
T ss_pred             -CCHHHHHHHHHHcCCeE
Confidence             89999999999999983

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=9.6e-39  Score=275.33  Aligned_cols=231  Identities=22%  Similarity=0.302  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ++.++|.++++++|+++|+++ .++++||+||.++++++|.+|.++|+++||+|+++++|+++++++++||+++|++++|
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp   80 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVW-RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP   80 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred             cHHHHHHHHHHHCCCceEEEe-CCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            688999999999999999985 6778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTT  173 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  173 (251)
                      ++|..+.+++.++++.+++++++++.......    ........+.....................++++++|+||||||
T Consensus        81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT  156 (512)
T 3fce_A           81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGST  156 (512)
T ss_dssp             EETTSCHHHHHHHHHHSCCCEEEESSCCCSSC----CSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC--
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEecCcccccc----cccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCC
Confidence            99999999999999999999999985432211    11111111111111111111111223345678999999999999


Q ss_pred             CCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhcccc
Q psy4550         174 GKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLPL  248 (251)
Q Consensus       174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~v  248 (251)
                      |.||||++||+++.+.+......+++.++|++++.+|+     ...++.++..|+++++.+....++|..+++.++++++
T Consensus       157 G~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~  236 (512)
T 3fce_A          157 GNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI  236 (512)
T ss_dssp             --CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCC
T ss_pred             CCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999876544     3467889999999999987555799999999999998


Q ss_pred             C
Q psy4550         249 N  249 (251)
Q Consensus       249 t  249 (251)
                      |
T Consensus       237 t  237 (512)
T 3fce_A          237 Q  237 (512)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2e-38  Score=275.15  Aligned_cols=233  Identities=21%  Similarity=0.257  Sum_probs=188.7

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ..++.++|.+.++++|+++|+++ +++.+||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~  107 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV  107 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEc-CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            45789999999999999999985 67899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchh--------hhhhcc--CCCeee-ecch-----hhhhhhhhhhcccCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYM--------DRLERT--SVPKVK-LEND-----FLSKMISENEKLHNVDF  155 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~  155 (251)
                      +|+++..+.+++.+++++++++++|+++...        +.+...  ....+. ....     +......  ........
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  185 (544)
T 3o83_A          108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIET--PAETFVDF  185 (544)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHS--CCSSCCCC
T ss_pred             ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhc--cccccccc
Confidence            9999999999999999999999999987643        111111  111111 1111     1111111  11111222


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH--HH-----HHHHhhhcCccEEEe
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF--VW-----EMLRPLTQGIPMYVI  228 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~l~~G~~~v~~  228 (251)
                      ....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|+  .+     .++.++..|+++++.
T Consensus       186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            45567899999999999999999999999999999999999999999998876542  21     478899999999999


Q ss_pred             cCccccCchHHHhhhhccccCC
Q psy4550         229 SDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +.   +++..+++.|+++++|.
T Consensus       266 ~~---~~~~~~~~~i~~~~~t~  284 (544)
T 3o83_A          266 PN---PEPLNCFSIIQRHQVNM  284 (544)
T ss_dssp             SS---CCHHHHHHHHHHHTCCE
T ss_pred             CC---CCHHHHHHHHHHHCCCE
Confidence            97   89999999999999983

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=3.3e-38  Score=275.21  Aligned_cols=230  Identities=26%  Similarity=0.420  Sum_probs=188.1

Q ss_pred             chhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCC
Q psy4550          10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG   89 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~   89 (251)
                      +...++.++|.+.++++|+++|+++ .++++||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+++|+
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~  150 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLH-EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGG  150 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEEC-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence            3456899999999999999999985 677899999999999999999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550          90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS  169 (251)
Q Consensus        90 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  169 (251)
                      +++|++|..+.+++.+++++++++++|++++..+.+...  ..+.......      .............++++++|+||
T Consensus       151 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~d~a~i~~T  222 (570)
T 4gr5_A          151 GYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDEAA------SDAPAGNLATGVGPEDVACVMFT  222 (570)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC-------------CCCCCCCCCTTSEEEEECC
T ss_pred             EEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeecccc------ccccccccCCCCCCCCeEEEEEC
Confidence            999999999999999999999999999998765544321  1111111100      00111122344678999999999


Q ss_pred             cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      |||||.||||+++|+++.+.+.. ...+++.++|++++.+|+     .+.++.++..|+++++.+.. .++|..+++.|+
T Consensus       223 SGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~i~  300 (570)
T 4gr5_A          223 SGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQ-NPDPLEIGELVA  300 (570)
T ss_dssp             SSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSS-SCCHHHHHHHHH
T ss_pred             CcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCc-cCCHHHHHHHHH
Confidence            99999999999999999876654 455678889998775543     34678899999999998742 479999999999


Q ss_pred             ccccCC
Q psy4550         245 RLPLNG  250 (251)
Q Consensus       245 ~~~vt~  250 (251)
                      ++++|.
T Consensus       301 ~~~vt~  306 (570)
T 4gr5_A          301 RHGVTM  306 (570)
T ss_dssp             HHTCCE
T ss_pred             HcCCcE
Confidence            999983

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=6e-38  Score=271.98  Aligned_cols=234  Identities=18%  Similarity=0.143  Sum_probs=186.4

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEe---cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVD---HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~---~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ..++.++|.+.++++|+++|+++   .+++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G   96 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG   96 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence            45899999999999999999984   345789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeee-ecchh----hhhhhhhhhcccCCCCCCC
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVK-LENDF----LSKMISENEKLHNVDFPQV  158 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  158 (251)
                      ++++|++|.++.+++.+++++++++++|++++..+.+...     ....+. .....    ..........   ......
T Consensus        97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  173 (541)
T 1v25_A           97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE---ADPVRV  173 (541)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSC---CCCCCC
T ss_pred             cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhcc---CCcccC
Confidence            9999999999999999999999999999998765544321     111121 11100    0000000000   111345


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHH--HHHhCCCCCCChhhhhHHHH-----HHHHHhhhcCccEEEecCc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKW--RHRAYPYDEDDREACNVFFV-----WEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~G~~~v~~~~~  231 (251)
                      .++++++|+|||||||.||||++||+++......  ....++++++|++++.+|++     ..++.++..|+++++.+. 
T Consensus       174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~-  252 (541)
T 1v25_A          174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP-  252 (541)
T ss_dssp             CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT-
T ss_pred             CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC-
Confidence            6789999999999999999999999999877665  23456788899988765432     245788999999999875 


Q ss_pred             cccCchHHHhhhhccccCC
Q psy4550         232 VIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt~  250 (251)
                       .++|..+++.|+++++|.
T Consensus       253 -~~~~~~~~~~i~~~~~t~  270 (541)
T 1v25_A          253 -RLDPASLVELFDGEGVTF  270 (541)
T ss_dssp             -CCSHHHHHHHHHHTTCCE
T ss_pred             -CCCHHHHHHHHHhcCeeE
Confidence             379999999999999983

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.6e-38  Score=278.29  Aligned_cols=239  Identities=18%  Similarity=0.258  Sum_probs=191.7

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecC---CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~---~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      .+...++.++|.+.++++|+++|+++.+   ++++||+||.++++++|.+|+++|+++||+|+++++|+++++++++||+
T Consensus         7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   86 (590)
T 3kxw_A            7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL   86 (590)
T ss_dssp             HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence            4566799999999999999999997533   4789999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCC---CHHHHHHHHhhcCccEEEEccchhhhhhccC---CCeee-ecchhhhhhhhhhhcccCCCCCCC
Q psy4550          86 KAGGGYLPLETSY---PPALLESVLDDAKPSIVITKGEYMDRLERTS---VPKVK-LENDFLSKMISENEKLHNVDFPQV  158 (251)
Q Consensus        86 ~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  158 (251)
                      ++|++++|++|..   +.+++.++++.+++++++++.+..+.+....   .+... ............  ..........
T Consensus        87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  164 (590)
T 3kxw_A           87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELN--RSSSWQPTSI  164 (590)
T ss_dssp             HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGG--GGGGCCCCCC
T ss_pred             HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhcccc--ccccCCCCCC
Confidence            9999999999988   4578999999999999999988766554321   11000 000000001000  1111233456


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCc-
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDE-  231 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~-  231 (251)
                      .++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|      .++.++..|+++++.++. 
T Consensus       165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~  244 (590)
T 3kxw_A          165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFS  244 (590)
T ss_dssp             CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHH
T ss_pred             CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHH
Confidence            7899999999999999999999999999999999999999999999988665422      267789999999998861 


Q ss_pred             cccCchHHHhhhhccccC
Q psy4550         232 VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt  249 (251)
                      ...+|..+++.|+++++|
T Consensus       245 ~~~~~~~~~~~i~~~~~t  262 (590)
T 3kxw_A          245 FLQNPLSWLKHITKYKAT  262 (590)
T ss_dssp             HHHCTHHHHHHHHHHTCS
T ss_pred             HHHCHHHHHHHHHHhCCe
Confidence            111899999999999998

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.6e-38  Score=271.91  Aligned_cols=231  Identities=22%  Similarity=0.273  Sum_probs=181.2

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecC------C--CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA   83 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~------~--~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a   83 (251)
                      ..++.++|.+.++++|+++|+++.+      +  +++||+||.++++++|++|+++|+ +||+|+++++|+++++++++|
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA  101 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG  101 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence            4589999999999999999998633      2  689999999999999999999996 999999999999999999999


Q ss_pred             HHHHCCeEeeCCC---CCCHHHHHHHHhhcCccEEEEccchhhhhhccCCC-------eeeecchhhhhhhhhhhcccCC
Q psy4550          84 IHKAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP-------KVKLENDFLSKMISENEKLHNV  153 (251)
Q Consensus        84 ~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  153 (251)
                      |+++|++++|+++   ..+.+++.+++++++++++|++++..+.+......       .+...+.    ..  .......
T Consensus       102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~  175 (480)
T 3t5a_A          102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL----LD--LDAPNGY  175 (480)
T ss_dssp             HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG----SC--TTCC---
T ss_pred             HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc----cc--cccccCC
Confidence            9999999999999   77899999999999999999998876655432111       1111100    00  0011112


Q ss_pred             CCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCC------CChhhhhHHH------HHHHHHhhhc
Q psy4550         154 DFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDE------DDREACNVFF------VWEMLRPLTQ  221 (251)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~l~~  221 (251)
                      ......++++++|+|||||||.||||++||+++.+++......+++..      +|++++++|+      ...++.++..
T Consensus       176 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~  255 (480)
T 3t5a_A          176 TFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILG  255 (480)
T ss_dssp             CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHH
T ss_pred             CCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHc
Confidence            334566789999999999999999999999999999988888888777      8888776644      3456889999


Q ss_pred             CccEEEecC-ccccCchHHHhhhhccccC
Q psy4550         222 GIPMYVISD-EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       222 G~~~v~~~~-~~~~~~~~~~~~i~~~~vt  249 (251)
                      |+++++.++ ...++|..+++.|+++++|
T Consensus       256 G~~~v~~~~~~~~~~~~~~~~~i~~~~~t  284 (480)
T 3t5a_A          256 GYPAVLTSPVSFLQRPARWMHLMASDFHA  284 (480)
T ss_dssp             TCCEEECCHHHHHHCTHHHHHHTTSSSEE
T ss_pred             CCceEEECHHHHHHCHHHHHHHHHhhcee
Confidence            999999885 1114999999999999986

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.4e-37  Score=267.12  Aligned_cols=231  Identities=21%  Similarity=0.321  Sum_probs=186.7

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      +.++.++|.+.++++|+++|+. ..++++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~-~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY   81 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEE-ETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHHCCCCccee-cCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            3589999999999999999997 477889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSG  171 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  171 (251)
                      +|++|..+.+++.++++.++++++|++++........  ..+.. ....   ................++++++|+||||
T Consensus        82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~--~~~~~-~~~~---~~~~~~~~~~~~~~~~~~d~a~i~~TSG  155 (521)
T 3l8c_A           82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--SLVSL-SEIE---SAKLAEMPYERTHSVKGDDNYYIIFTSG  155 (521)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS--EEEEH-HHHH---HHHHHTCCCCCSSCCCTTSEEEEEECCC
T ss_pred             EecCccccHHHHHHHHHhCCCCEEEecCccccccccC--cccch-hhhh---hcccccCCcccCCCCCCCCcEEEEEcCC
Confidence            9999999999999999999999999988765433211  11111 1111   1111111122334567899999999999


Q ss_pred             CCCCCceEEeccHHHHHHHHHHHHh--CCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhh
Q psy4550         172 TTGKPKGIVCPHRGAVHAYKWRHRA--YPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV  244 (251)
Q Consensus       172 tTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  244 (251)
                      |||.||||++||+++.+.+......  +++..++++++..++     ...++.++..|+++++.+.....++..+++.++
T Consensus       156 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~  235 (521)
T 3l8c_A          156 TTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIA  235 (521)
T ss_dssp             ---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHH
Confidence            9999999999999999888777665  677888888765543     345778899999999998755569999999999


Q ss_pred             ccccC
Q psy4550         245 RLPLN  249 (251)
Q Consensus       245 ~~~vt  249 (251)
                      ++++|
T Consensus       236 ~~~~t  240 (521)
T 3l8c_A          236 QLPVG  240 (521)
T ss_dssp             HSCCS
T ss_pred             HcCCc
Confidence            99987

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.4e-37  Score=270.13  Aligned_cols=236  Identities=18%  Similarity=0.212  Sum_probs=182.6

Q ss_pred             hhhHHHHHHHHHHhCCCceEEE---e-cCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVV---D-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~---~-~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      ..++.++|.+.++++|+++|++   + ..++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++
T Consensus        19 ~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~   98 (550)
T 3rix_A           19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI   98 (550)
T ss_dssp             CSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence            4689999999999999998865   4 34678999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeee-cc--------hhhhhhhhhhhcc---
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKL-EN--------DFLSKMISENEKL---  150 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~-~~--------~~~~~~~~~~~~~---  150 (251)
                      |++++|++|..+.+++.++++.++++++|++++..+.+...     ....+.. ..        .+...........   
T Consensus        99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (550)
T 3rix_A           99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNE  178 (550)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCT
T ss_pred             CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccc
Confidence            99999999999999999999999999999998876554322     1111111 11        0111111111100   


Q ss_pred             -cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---CCCCCCChhhhhHHH-----HHHHHHhhhc
Q psy4550         151 -HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---YPYDEDDREACNVFF-----VWEMLRPLTQ  221 (251)
Q Consensus       151 -~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~l~~  221 (251)
                       .........++++++|+|||||||.||||+++|+++...+......   +++.+++++++.+|+     .+.++.++..
T Consensus       179 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  258 (550)
T 3rix_A          179 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC  258 (550)
T ss_dssp             TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHc
Confidence             0011122345789999999999999999999999999887766654   467888988775543     3456788999


Q ss_pred             CccEEEecCccccCchHHHhhhhccccCC
Q psy4550         222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      |+++++.+.   +++..+++.|+++++|.
T Consensus       259 G~~~~~~~~---~~~~~~~~~i~~~~~t~  284 (550)
T 3rix_A          259 GFRVVLMYR---FEEELFLRSLQDYKIQS  284 (550)
T ss_dssp             TCEEEECSS---CCHHHHHHHHHHTTCSE
T ss_pred             CCEEEEeCC---CCHHHHHHHHHHcCCeE
Confidence            999999987   99999999999999983

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.4e-37  Score=266.58  Aligned_cols=230  Identities=19%  Similarity=0.257  Sum_probs=189.0

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      ++.++|.++++++|+++|+++ +++++||+||.++++++|.+|++. |.++|++|+++++|+++++++++||+++|++++
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v   80 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRS-QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI   80 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred             cHHHHHHHHHHHCCCCeEEEc-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence            688999999999999999985 778999999999999999999885 888999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGT  172 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  172 (251)
                      |++|.++.+++.+++++++++++|+++.............+..    ........  ..........++++++|+|||||
T Consensus        81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGT  154 (511)
T 3e7w_A           81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSA----EELLENEG--GSVSQDQWVKEHETFYIIYTSGS  154 (511)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEH----HHHHTSCS--CCCCGGGSCCTTSEEEEEEECCT
T ss_pred             ecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecH----hhhhcccc--CCccccccCCCCCeEEEEECCCC
Confidence            9999999999999999999999999765432211111111111    11111100  01112233567899999999999


Q ss_pred             CCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHhhhhccc
Q psy4550         173 TGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVRLP  247 (251)
Q Consensus       173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~  247 (251)
                      ||.||||++||+++.+.+......+++.++|++++.+|+     ...++.++..|+++++.+....++|..+++.+++++
T Consensus       155 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~  234 (511)
T 3e7w_A          155 TGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSG  234 (511)
T ss_dssp             TSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence            999999999999999999999999999999998875543     446788999999999998755579999999999999


Q ss_pred             cCC
Q psy4550         248 LNG  250 (251)
Q Consensus       248 vt~  250 (251)
                      +|.
T Consensus       235 ~t~  237 (511)
T 3e7w_A          235 LNV  237 (511)
T ss_dssp             CSE
T ss_pred             CcE
Confidence            973

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.1e-37  Score=272.44  Aligned_cols=234  Identities=21%  Similarity=0.219  Sum_probs=188.2

Q ss_pred             hhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        11 ~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ...++.++|.++++  |+++|+++ +++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~  101 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA  101 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CcCCHHHHHHHhhC--CCCeEEec-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence            34688999999887  99999985 6778999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhh--------hhh-c-cCCCeeeecchh-h-hhhhhhhhcccCCCCCCC
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMD--------RLE-R-TSVPKVKLENDF-L-SKMISENEKLHNVDFPQV  158 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~-~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  158 (251)
                      ++|++|..+.+++.++++++++++++++.....        ... . .....+...... . ..................
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (617)
T 3rg2_A          102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPS  181 (617)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSCCCCCC
T ss_pred             EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccccccCCCCC
Confidence            999999999999999999999999999876431        110 0 011111111110 0 000001111111233455


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH--H-----HHHHHhhhcCccEEEecCc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF--V-----WEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~l~~G~~~v~~~~~  231 (251)
                      .++++++|+|||||||.||||+++|+++.+.+......+++.+++++++.+|+  .     .+++.++..|+++++.+. 
T Consensus       182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-  260 (617)
T 3rg2_A          182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-  260 (617)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-
T ss_pred             CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-
Confidence            67899999999999999999999999999999999999999999998876542  1     257889999999999987 


Q ss_pred             cccCchHHHhhhhccccCC
Q psy4550         232 VIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt~  250 (251)
                        +++..+++.++++++|.
T Consensus       261 --~~~~~~~~~i~~~~~t~  277 (617)
T 3rg2_A          261 --PSATLCFPLIEKHQVNV  277 (617)
T ss_dssp             --CCHHHHHHHHHHTTCCE
T ss_pred             --CCHHHHHHHHHHhCCcE
Confidence              89999999999999973

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=5.2e-37  Score=266.42  Aligned_cols=235  Identities=20%  Similarity=0.272  Sum_probs=185.2

Q ss_pred             CchhhhHHH-HHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550           9 YDAEGALHY-MFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus         9 ~~~~~~l~~-~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      .|.+.++.+ ++.+.++++ +++|+++. +++.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus        21 ~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~   99 (548)
T 2d1s_A           21 EEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF   99 (548)
T ss_dssp             CSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence            445568999 899999999 99999863 568899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc------CCCeeeecch-------hhhhhhhhhhcccCC
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT------SVPKVKLEND-------FLSKMISENEKLHNV  153 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~  153 (251)
                      +|++++|++|.++.+++.+++++++++++|++++..+.+...      ....+.....       .+.......... ..
T Consensus       100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  178 (548)
T 2d1s_A          100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP-GF  178 (548)
T ss_dssp             HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCT-TC
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccc-cC
Confidence            999999999999999999999999999999998766554321      1111211111       011111111000 00


Q ss_pred             CCCCC------CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh---CCCCCCChhhhhHHHH-----H-HHHHh
Q psy4550         154 DFPQV------GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA---YPYDEDDREACNVFFV-----W-EMLRP  218 (251)
Q Consensus       154 ~~~~~------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~-~~~~~  218 (251)
                      .....      .++++++|+|||||||.||||++||+++...+......   +++.++|++++.+|++     . .++.+
T Consensus       179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~  258 (548)
T 2d1s_A          179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL  258 (548)
T ss_dssp             CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred             CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence            10111      23899999999999999999999999999988877666   6788899987755432     2 24556


Q ss_pred             hhcCccEEEecCccccCchHHHhhhhccccC
Q psy4550         219 LTQGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       219 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      + .|+++++.+.   +++..+++.|+++++|
T Consensus       259 l-~G~~~v~~~~---~~~~~~~~~i~~~~~t  285 (548)
T 2d1s_A          259 I-CGFRVVMLTK---FDEETFLKTLQDYKCT  285 (548)
T ss_dssp             H-TTCEEEECCC---CCHHHHHHHHHHTTEE
T ss_pred             h-cCcEEEEcCC---CCHHHHHHHHHHcCCc
Confidence            6 9999999987   9999999999999987

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=3.3e-37  Score=283.65  Aligned_cols=240  Identities=20%  Similarity=0.316  Sum_probs=192.8

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      ..|...++.++|.+.++++|+++|+++. +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||++
T Consensus        56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~  135 (979)
T 3tsy_A           56 YIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASF  135 (979)
T ss_dssp             CCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence            3455679999999999999999999874 368899999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecch-----------hhhhhhhhhhccc
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLEND-----------FLSKMISENEKLH  151 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~  151 (251)
                      +|++++|++|.++.+++.+++++++++++|++++..+.+...    ....+.....           +............
T Consensus       136 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (979)
T 3tsy_A          136 RGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASE  215 (979)
T ss_dssp             HTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGG
T ss_pred             cCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccc
Confidence            999999999999999999999999999999998776554332    1111211110           0000100011111


Q ss_pred             CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHH----hCCCCCCChhhhhHHHH------HHHHHhhhc
Q psy4550         152 NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHR----AYPYDEDDREACNVFFV------WEMLRPLTQ  221 (251)
Q Consensus       152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~l~~  221 (251)
                      ........++++++|+|||||||.||||+++|+++.+.+.....    .+++.++|++++.+|++      ..++.++..
T Consensus       216 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~  295 (979)
T 3tsy_A          216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRV  295 (979)
T ss_dssp             GSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHH
T ss_pred             cCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhc
Confidence            12334567899999999999999999999999999988776654    45678889887755432      345778999


Q ss_pred             CccEEEecCccccCchHHHhhhhccccCC
Q psy4550         222 GIPMYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       222 G~~~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      |+++++.++   +++..+++.|+++++|.
T Consensus       296 G~~~v~~~~---~~~~~~~~~i~~~~~t~  321 (979)
T 3tsy_A          296 GAAILIMPK---FEINLLLELIQRCKVTV  321 (979)
T ss_dssp             TCEEEECSS---CCHHHHHHHHHHHTCCE
T ss_pred             CcEEEEeCC---CCHHHHHHHHHHhCCeE
Confidence            999999987   99999999999999983

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.6e-37  Score=265.76  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEee
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP   93 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   93 (251)
                      ++.++|.++++++|+++|+++ .++++||+||.++++++|.+|+++   +||+|+++++|+++++++++||+++|++++|
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp   77 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM   77 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEEC-SSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHhcCCceEEEe-CCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            567889999999999999985 678999999999999999999987   8999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC----CCeeeec---ch---------hhhhhhh--hhhcccCCCC
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPKVKLE---ND---------FLSKMIS--ENEKLHNVDF  155 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~---~~---------~~~~~~~--~~~~~~~~~~  155 (251)
                      +++.++.+++.++++.++++++|++++.........    ...+...   ..         +......  ..........
T Consensus        78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (501)
T 3ipl_A           78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILN  157 (501)
T ss_dssp             CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHTC
T ss_pred             cCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccccc
Confidence            999999999999999999999999877654332110    0000000   00         0000000  0000000122


Q ss_pred             CCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecC
Q psy4550         156 PQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISD  230 (251)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~  230 (251)
                      ....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|+     ...++.++..|+++++.+.
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  237 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK  237 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence            34567899999999999999999999999999999999999999999998775543     3346889999999999987


Q ss_pred             ccccCchHHHhhhhccccCC
Q psy4550         231 EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       231 ~~~~~~~~~~~~i~~~~vt~  250 (251)
                         +++..+++.|+++++|.
T Consensus       238 ---~~~~~~~~~i~~~~~t~  254 (501)
T 3ipl_A          238 ---FNAEQILTMIKNERITH  254 (501)
T ss_dssp             ---CCHHHHHHHHHHSCCCE
T ss_pred             ---CCHHHHHHHHHHcCCcE
Confidence               99999999999999983

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=8.6e-37  Score=266.49  Aligned_cols=238  Identities=14%  Similarity=0.183  Sum_probs=185.6

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEec----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDH----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      ++...++|.++++++|+++|+++.    +++.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~  134 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL  134 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence            445669999999999999999852    2368999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchh--hhhhcc----C---CCeeeecc-------hhhhhhhhhhhccc
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM--DRLERT----S---VPKVKLEN-------DFLSKMISENEKLH  151 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~----~---~~~~~~~~-------~~~~~~~~~~~~~~  151 (251)
                      |++++|++|.++.+++.+++++++++++|++.+..  +.+...    .   ...+....       ++............
T Consensus       135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (580)
T 3etc_A          135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE  214 (580)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred             CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence            99999999999999999999999999999987643  322211    1   11222211       11111111111000


Q ss_pred             -CCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCcc
Q psy4550         152 -NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIP  224 (251)
Q Consensus       152 -~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~  224 (251)
                       ........++++++|+|||||||.||||+++|.++...+.......++.+++++++..++      +..++.++..|++
T Consensus       215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~  294 (580)
T 3etc_A          215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA  294 (580)
T ss_dssp             CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred             cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence             000124577999999999999999999999999999888777777888899988764432      2246778999999


Q ss_pred             EEEecCccccCchHHHhhhhccccCC
Q psy4550         225 MYVISDEVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       225 ~v~~~~~~~~~~~~~~~~i~~~~vt~  250 (251)
                      +++.+. ..+++..+++.|+++++|.
T Consensus       295 ~~~~~~-~~~~~~~~~~~i~~~~vt~  319 (580)
T 3etc_A          295 VFVYDY-DRFEAKNMLEKASKYGVTT  319 (580)
T ss_dssp             EEEEEC-SSCCHHHHHHHHHHHTCCE
T ss_pred             EEEecC-CCCCHHHHHHHHHHHCCeE
Confidence            988852 1489999999999999983

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=6.6e-37  Score=263.25  Aligned_cols=225  Identities=24%  Similarity=0.317  Sum_probs=180.1

Q ss_pred             HHHHHHHHhCCCceEEE--ecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeC
Q psy4550          17 YMFRNQAKRTPDKIAVV--DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL   94 (251)
Q Consensus        17 ~~l~~~~~~~~~~~a~~--~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i   94 (251)
                      ++|.+.++++|+++++.  +.+++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            46778889999998876  3577899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----CCCeeeecchhhhhh-hhhhhcccCCCCCCCCCCCeEEEEec
Q psy4550          95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----SVPKVKLENDFLSKM-ISENEKLHNVDFPQVGLDDIAYIVYS  169 (251)
Q Consensus        95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~T  169 (251)
                      +|..+.+++.+++++++++++|++++..+.+...    ............... ................++++++|+||
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T  163 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT  163 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEEEC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEEEC
Confidence            9999999999999999999999998765543321    111111111100000 00111111123345677999999999


Q ss_pred             cCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHHHH------HHHHhhhcCccEEEecCccccCchHHHhhh
Q psy4550         170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW------EMLRPLTQGIPMYVISDEVIYDPPRLTSGW  243 (251)
Q Consensus       170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i  243 (251)
                      |||||.||||+++|+++.+.+......+++.++|++++.+|++|      .++.++..|+++++.+.   ++|..+++.+
T Consensus       164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~i  240 (503)
T 4fuq_A          164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK---FDPDKILDLM  240 (503)
T ss_dssp             C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS---CCHHHHHHHH
T ss_pred             CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC---CCHHHHHHHH
Confidence            99999999999999999999999999999999999988766532      35678999999999997   9999999999


Q ss_pred             h
Q psy4550         244 V  244 (251)
Q Consensus       244 ~  244 (251)
                      +
T Consensus       241 ~  241 (503)
T 4fuq_A          241 A  241 (503)
T ss_dssp             T
T ss_pred             h
Confidence            8

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=7.1e-37  Score=264.65  Aligned_cols=232  Identities=21%  Similarity=0.265  Sum_probs=179.5

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeE
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY   91 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~   91 (251)
                      ++++.++|.+.++ +|+++|+++ +++++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  100 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP  100 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEEC-SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEe-CCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence            4568999999998 999999985 56889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CC-Ceeee-cch--------hhhhhhhhhhcccCCCCC
Q psy4550          92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SV-PKVKL-END--------FLSKMISENEKLHNVDFP  156 (251)
Q Consensus        92 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~-~~~--------~~~~~~~~~~~~~~~~~~  156 (251)
                      +|+++.++.+++.+++++++++++|++++..+.+...     .. ..+.. ...        .+......  ........
T Consensus       101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  178 (529)
T 2v7b_A          101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA--AAPAAKAA  178 (529)
T ss_dssp             EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHT--SCCCSSCC
T ss_pred             EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhcc--CCCccccc
Confidence            9999999999999999999999999998765544321     11 11211 110        11111110  11112233


Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHH-HHHHHHHHHhCCCCCCChhhhhHHHH------HHHHHhhhcCccEEEec
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGA-VHAYKWRHRAYPYDEDDREACNVFFV------WEMLRPLTQGIPMYVIS  229 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~G~~~v~~~  229 (251)
                      ...++++++|+|||||||.||||+++|+++ ..........+++.++|++++.+|++      ..++.++..|+++++.+
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  258 (529)
T 2v7b_A          179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA  258 (529)
T ss_dssp             CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred             CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence            456789999999999999999999999999 56655555567888999987755432      23567899999999885


Q ss_pred             CccccCchHHHhhhhccccC
Q psy4550         230 DEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .  .+++..+++.|+++++|
T Consensus       259 ~--~~~~~~~~~~i~~~~~t  276 (529)
T 2v7b_A          259 E--RPTADAIFARLVEHRPT  276 (529)
T ss_dssp             S--CCCHHHHHHHHHHSCCS
T ss_pred             C--CCCHHHHHHHHHHhCCE
Confidence            3  38999999999999997

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.6e-36  Score=268.13  Aligned_cols=235  Identities=18%  Similarity=0.285  Sum_probs=184.1

Q ss_pred             hhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      +++.++|.++++++|+++|+++.     +++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~  155 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI  155 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence            56888999999999999999852     2367999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hh----hcc---CCCe-eeecch------------
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RL----ERT---SVPK-VKLEND------------  138 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~---~~~~-~~~~~~------------  138 (251)
                      |++++|+++.++.+++.+++++++++++|+++....         .+    ...   .... +.+...            
T Consensus       156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  235 (652)
T 1pg4_A          156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL  235 (652)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence            999999999999999999999999999999876422         11    111   1111 111100            


Q ss_pred             hhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHH-HHHHHhCCCCCCChhhhhHHH------
Q psy4550         139 FLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAY-KWRHRAYPYDEDDREACNVFF------  211 (251)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------  211 (251)
                      .+......  ...........++++++|+|||||||.||||+++|++++..+ ......+++.++|++++..++      
T Consensus       236 ~~~~~~~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~  313 (652)
T 1pg4_A          236 WWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH  313 (652)
T ss_dssp             EHHHHHTT--SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred             eHHHHHhh--cCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeech
Confidence            01111111  011122334567899999999999999999999999988765 445667899999998775432      


Q ss_pred             HHHHHHhhhcCccEEEecCc-cccCchHHHhhhhccccC
Q psy4550         212 VWEMLRPLTQGIPMYVISDE-VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 ~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~vt  249 (251)
                      .+.++.++..|+++++.+.. ..++|..+++.|++++||
T Consensus       314 ~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt  352 (652)
T 1pg4_A          314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN  352 (652)
T ss_dssp             HHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence            24568899999999998752 236899999999999998

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2e-36  Score=285.00  Aligned_cols=229  Identities=23%  Similarity=0.401  Sum_probs=190.4

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .++.++|.+.++++|+++|+++ .++++||+||.++++++|+.|+++|+++|++|+|+++|+++++++++||+++|++++
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v  542 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTY-SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL  542 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEES-SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEE-CCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence            6899999999999999999984 678899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCC--CeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEecc
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV--PKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSS  170 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  170 (251)
                      |++|..+.+++.++++++++++++++++..+.......  ..+...... .    . ............+++++||+|||
T Consensus       543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~ayiiyTS  616 (1304)
T 2vsq_A          543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQT-R----F-EEQASDPATAIDPNDPAYIMYTS  616 (1304)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGG-G----G-GSCSSCCCCCCCTTSEEEEEEEC
T ss_pred             EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEecccc-c----c-ccccCCCCCCCCCCCeEEEEeCC
Confidence            99999999999999999999999999876655432211  111111111 0    0 01111223345788999999999


Q ss_pred             CCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHH-----HHHHHHHhhhcCccEEEecCccccCchHHHhhhhc
Q psy4550         171 GTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVF-----FVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWVR  245 (251)
Q Consensus       171 GtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~  245 (251)
                      ||||+||||+++|+++.+. ......+++.++|+++...+     ..+.++.++..|+++++.+....++|..+++.|++
T Consensus       617 GSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~  695 (1304)
T 2vsq_A          617 GTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQ  695 (1304)
T ss_dssp             CSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHH
Confidence            9999999999999999865 44456678888998876543     35678999999999999997777899999999999


Q ss_pred             cccC
Q psy4550         246 LPLN  249 (251)
Q Consensus       246 ~~vt  249 (251)
                      ++||
T Consensus       696 ~~vt  699 (1304)
T 2vsq_A          696 ENVN  699 (1304)
T ss_dssp             HTCC
T ss_pred             cCCc
Confidence            9998

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=5e-36  Score=265.26  Aligned_cols=234  Identities=22%  Similarity=0.247  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      +++.++|.++++++|+++|+++.     +++++||+||.++++++|+.|+ ++|+++||+|+++++|+++++++++||++
T Consensus        82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~  161 (663)
T 1ry2_A           82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  161 (663)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            57889999999999999999852     3468999999999999999999 99999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh---------hhhcc-----CCCee-eecc--------------
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD---------RLERT-----SVPKV-KLEN--------------  137 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-----~~~~~-~~~~--------------  137 (251)
                      +|++++|+++.++.+++.++++++++++||+++....         .+.+.     ....+ ....              
T Consensus       162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  241 (663)
T 1ry2_A          162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL  241 (663)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred             cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence            9999999999999999999999999999999876432         11110     11111 1110              


Q ss_pred             hhhhhhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH-----
Q psy4550         138 DFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF-----  211 (251)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----  211 (251)
                      .+.+... .  ...........++++++|+|||||||+||||+++|++++..+. .....+++.++|++++..++     
T Consensus       242 ~~~~~~~-~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g  318 (663)
T 1ry2_A          242 DWATEKK-K--YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG  318 (663)
T ss_dssp             EHHHHHT-T--SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred             cHHHHHh-h--cCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence            0111111 0  0111223345678999999999999999999999999886654 45567899999998774432     


Q ss_pred             -HHHHHHhhhcCccEEEecC-ccccCchHHHhhhhccccC
Q psy4550         212 -VWEMLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       212 -~~~~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt  249 (251)
                       .+.++.++..|+++++.+. ...+++..+++.|++++||
T Consensus       319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt  358 (663)
T 1ry2_A          319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT  358 (663)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence             2456789999999999874 2236899999999999998

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.1e-36  Score=260.56  Aligned_cols=238  Identities=20%  Similarity=0.229  Sum_probs=179.7

Q ss_pred             cCchhhhHHHHHHHHHHhCCCceEEEecCC---------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH
Q psy4550           8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDG---------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT   78 (251)
Q Consensus         8 ~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~---------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~   78 (251)
                      ...+..++.++|.++++++|+++|+++.++         +++||+||.++++++|+.|.+.|+ +||+|+++++|+++++
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~   93 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF   93 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence            344556899999999999999999986432         689999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCC
Q psy4550          79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQV  158 (251)
Q Consensus        79 ~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (251)
                      ++++||+++|++++|++|.++.+++.+++++++++++|++++..+.........+... .....................
T Consensus        94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (562)
T 3ite_A           94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDT-KNQSFIENLSTQDTSDILNNY  172 (562)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEET-TCHHHHHHHHHSCCSCCCCCC
T ss_pred             HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecc-cchhhhhhcccccccccccCC
Confidence            9999999999999999999999999999999999999998765544322111111111 111111111111111223445


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHh--------CCCCCCChhhhhH-----HHHHHHHHhhhcCccE
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRA--------YPYDEDDREACNV-----FFVWEMLRPLTQGIPM  225 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~~l~~G~~~  225 (251)
                      .++++++|+|||||||.||||+++|+++.+.+......        +.+...+++++..     .+...++.++..|+++
T Consensus       173 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  252 (562)
T 3ite_A          173 PENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA  252 (562)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred             CCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence            67889999999999999999999999999887665543        3466667776543     2345678899999999


Q ss_pred             EEecCccccCchHHHhhhhccccC
Q psy4550         226 YVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       226 v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      ++.+.  ...+..+++.++++++|
T Consensus       253 ~~~~~--~~~~~~~~~~i~~~~~t  274 (562)
T 3ite_A          253 VTGER--LSMLDDLPRTFRELGVT  274 (562)
T ss_dssp             EECCH--HHHHHSHHHHHHHTTCC
T ss_pred             Eecch--hhCHHHHHHHHHHcCCC
Confidence            99876  23468899999999987

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=8.8e-36  Score=259.73  Aligned_cols=232  Identities=16%  Similarity=0.174  Sum_probs=182.8

Q ss_pred             hhhHHHHHHHHHHh-----CCCceEEEecC----CCeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEccCCHHHHHHH
Q psy4550          12 EGALHYMFRNQAKR-----TPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISY   81 (251)
Q Consensus        12 ~~~l~~~l~~~~~~-----~~~~~a~~~~~----~~~~T~~~l~~~~~~~a~~L~~~-g~~~g~~V~l~~~~~~~~~~~~   81 (251)
                      .+++.++|.+.+++     +|+++|+++.+    ++.+||+||.++++++|.+|++. |+++||+|+++++|++++++++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~  116 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI  116 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence            45678999999998     99999998632    36899999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCe-eeecc-------hhhhhhhhhhh
Q psy4550          82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPK-VKLEN-------DFLSKMISENE  148 (251)
Q Consensus        82 ~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~-~~~~~-------~~~~~~~~~~~  148 (251)
                      +||+++|++++|++|.++.+++.+++++++++++|++++..+.+...     .... +....       .+......   
T Consensus       117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  193 (570)
T 3c5e_A          117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE---  193 (570)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHH---
T ss_pred             HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhc---
Confidence            99999999999999999999999999999999999998776554321     1111 12211       01111111   


Q ss_pred             cccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHH--HHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhh
Q psy4550         149 KLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVH--AYKWRHRAYPYDEDDREACNVFF------VWEMLRPLT  220 (251)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~  220 (251)
                      ...........++++++|+|||||||.||||+++|+ ++.  ..... ..+++.++|++++.+++      ...++.++.
T Consensus       194 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~  271 (570)
T 3c5e_A          194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWA  271 (570)
T ss_dssp             SCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHH
T ss_pred             ccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHH
Confidence            111112234567899999999999999999999999 544  44444 67788899998775533      224677899


Q ss_pred             cCccEEEecCccccCchHHHhhhhccccC
Q psy4550         221 QGIPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       221 ~G~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .|+++++.+.. .++|..+++.|+++++|
T Consensus       272 ~G~~~~~~~~~-~~~~~~~~~~i~~~~~t  299 (570)
T 3c5e_A          272 LGACTFVHLLP-KFDPLVILKTLSSYPIK  299 (570)
T ss_dssp             HTCEEEEECCS-SCCHHHHHHHHHHSCCC
T ss_pred             hCceEEEecCC-CCCHHHHHHHHHHhCCe
Confidence            99999998731 48999999999999997

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3e-35  Score=253.05  Aligned_cols=220  Identities=20%  Similarity=0.238  Sum_probs=173.8

Q ss_pred             chhhhHHHHHHHHHHhCCC-ceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          10 DAEGALHYMFRNQAKRTPD-KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        10 ~~~~~l~~~l~~~~~~~~~-~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      ..+.++.+.|.+.++++|+ ++|+++ +++++||+||.++++++|..|.     .|++|+++++|+++++++++||+++|
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~-~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~G   92 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAG   92 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEE-TTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEE-CCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence            3467888999999999997 999985 7789999999999999998775     38899999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEEe
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVY  168 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  168 (251)
                      ++++|++|..+.+++.+++++++++++|++++............+....          ............++++++|+|
T Consensus        93 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~d~a~i~~  162 (505)
T 3nyq_A           93 VAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDV----------RARGAVPEDGADDGDPALVVY  162 (505)
T ss_dssp             CCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCT----------TCCCCCCCCCCCTTSEEEEEE
T ss_pred             CEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccc----------ccccCCCCCCCCCCCeEEEEe
Confidence            9999999999999999999999999999986521110000111111110          001112234456789999999


Q ss_pred             ccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHHHhh
Q psy4550         169 SSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRLTSG  242 (251)
Q Consensus       169 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  242 (251)
                      ||||||.||||+++|+++...+......+++.++|++++.+|+      ...++.++..|+++++.+.   +++..+++.
T Consensus       163 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~  239 (505)
T 3nyq_A          163 TSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR---FSTEGAARE  239 (505)
T ss_dssp             ECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS---CCHHHHHHH
T ss_pred             CCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC---CChHHHHHH
Confidence            9999999999999999999999999999999999998875543      2246889999999999987   999999999


Q ss_pred             hhccccC
Q psy4550         243 WVRLPLN  249 (251)
Q Consensus       243 i~~~~vt  249 (251)
                      + ++++|
T Consensus       240 i-~~~~t  245 (505)
T 3nyq_A          240 L-NDGAT  245 (505)
T ss_dssp             H-TTTCC
T ss_pred             H-hhCCe
Confidence            9 77776

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.60  E-value=5.8e-16  Score=127.30  Aligned_cols=85  Identities=14%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             CCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCcccc
Q psy4550         160 LDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIY  234 (251)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~  234 (251)
                      .++++||+|||||||.||||++||+++.+++......++++++|++++.+|+     +..++.++..|+++++.++  .+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~--~~  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP--TA  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC--CS
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc--cc
Confidence            3689999999999999999999999999999999999999999999875543     3456788999999999875  23


Q ss_pred             CchHHHhhhhccccC
Q psy4550         235 DPPRLTSGWVRLPLN  249 (251)
Q Consensus       235 ~~~~~~~~i~~~~vt  249 (251)
                      +   .++.|+++++|
T Consensus       114 ~---~~~~i~~~~~t  125 (358)
T 4gs5_A          114 N---PLAGLDHADFD  125 (358)
T ss_dssp             C---TTTTCSSCCCS
T ss_pred             c---HHHHHHHhCCe
Confidence            3   46778888887

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.48  E-value=2.8e-14  Score=120.56  Aligned_cols=90  Identities=17%  Similarity=0.025  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEE
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYV  227 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~  227 (251)
                      ...++++++++|||||||.||+|+++|+++........   ..+++.++|++++.+++      ....+.++..|+++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            44668999999999999999999999999887655443   36788999988764432      3345778899999999


Q ss_pred             ecCccccCchHHHhhhhccccC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .+.   +++..+++.|+++++|
T Consensus       168 ~~~---~~~~~~~~~i~~~~~t  186 (443)
T 2y4o_A          168 MSG---GQTEKQVQLIRDFEPK  186 (443)
T ss_dssp             CCS---CCHHHHHHHHHHHCCS
T ss_pred             CCC---CCHHHHHHHHHHhCCc
Confidence            887   7999999999999997

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.42  E-value=1.8e-13  Score=115.46  Aligned_cols=90  Identities=16%  Similarity=-0.066  Sum_probs=74.1

Q ss_pred             CCCC-CCeEEEEeccCCCCCCceEEeccHHHHHHHHHH---HHhCCCCCCChhhhhHH------HHHHHHHhhhcCccEE
Q psy4550         157 QVGL-DDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWR---HRAYPYDEDDREACNVF------FVWEMLRPLTQGIPMY  226 (251)
Q Consensus       157 ~~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~~~v  226 (251)
                      ...+ +++++++|||||||.||+|+++|+++...+...   ...+++.++|++++.++      ....++.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3445 889999999999999999999999998766554   34568899999876543      2334677899999999


Q ss_pred             EecCccccCchHHHhhhhccccC
Q psy4550         227 VISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      +.+.   +++..+++.|+++++|
T Consensus       161 ~~~~---~~~~~~~~~i~~~~~t  180 (436)
T 3qov_A          161 PAAA---GNSKRQIKFISDFKTT  180 (436)
T ss_dssp             CCCS---CCHHHHHHHHHHHTCC
T ss_pred             eCCC---CCHHHHHHHHHHHCCC
Confidence            9887   8999999999999997

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.40  E-value=4.8e-13  Score=112.84  Aligned_cols=90  Identities=18%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEE
Q psy4550         157 QVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYV  227 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~  227 (251)
                      ...++++++++|||||||.||+|+++|+++...+....   ..+++.++|++++.+++      ...++.++..|+++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            44668999999999999999999999999887664433   36788899988654432      3346788999999998


Q ss_pred             ecCccccCchHHHhhhhccccC
Q psy4550         228 ISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      .+.   +++..+++.|+++++|
T Consensus       166 ~~~---~~~~~~~~~i~~~~~t  184 (437)
T 2y27_A          166 FGG---GQTEKQVQLIQDFRPD  184 (437)
T ss_dssp             CCS---CCHHHHHHHHHHHCCS
T ss_pred             CCC---CCHHHHHHHHHHhCCC
Confidence            887   7999999999999997

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.35  E-value=4.1e-13  Score=110.77  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhHHH------HHHHHHhhhcCccEEEe
Q psy4550         158 VGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNVFF------VWEMLRPLTQGIPMYVI  228 (251)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~G~~~v~~  228 (251)
                      ..++++++|+|||||||.||+|+++|+++...+....   ...++.++|++++..++      ....+.++..|+ ++++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~  166 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS  166 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence            4678899999999999999999999999998887543   55677888988765433      233455688898 6666


Q ss_pred             cCccccCch-----------------------HHHhhhhccccC
Q psy4550         229 SDEVIYDPP-----------------------RLTSGWVRLPLN  249 (251)
Q Consensus       229 ~~~~~~~~~-----------------------~~~~~i~~~~vt  249 (251)
                      ..   ++|.                       .+++.|+++++|
T Consensus       167 ~~---~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t  207 (369)
T 3hgu_A          167 ID---IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIR  207 (369)
T ss_dssp             CC---CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred             cc---CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCC
Confidence            65   7888                       888899999987

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=95.85  E-value=0.089  Score=43.78  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=69.6

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|.+.+...+..++..+...|+.++|++....+-  ....+...++++..|+..++.++ .+.+.+...+++.++++++
T Consensus       109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~  187 (437)
T 2y27_A          109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM  187 (437)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence            48999999888888887888899999999998885  34445567888999999887765 4788999999999999999


Q ss_pred             Eccchhhh
Q psy4550         117 TKGEYMDR  124 (251)
Q Consensus       117 ~~~~~~~~  124 (251)
                      ..+.....
T Consensus       188 ~~Ps~~~~  195 (437)
T 2y27_A          188 VTPSYMLS  195 (437)
T ss_dssp             ECHHHHHH
T ss_pred             ECHHHHHH
Confidence            87765543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=95.79  E-value=0.11  Score=43.41  Aligned_cols=85  Identities=15%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|.+.+...+..++..+...|+.++|++....+-  ....+...++++..|+..++.++. +.+.+...+++.++++++
T Consensus       111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~  189 (443)
T 2y4o_A          111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL  189 (443)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence            48999999888888888888899999999998885  344456678889999998887654 888999999999999999


Q ss_pred             Eccchhhh
Q psy4550         117 TKGEYMDR  124 (251)
Q Consensus       117 ~~~~~~~~  124 (251)
                      ..+.....
T Consensus       190 ~~Ps~~~~  197 (443)
T 2y4o_A          190 VTPSYMLN  197 (443)
T ss_dssp             ECHHHHHH
T ss_pred             ECHHHHHH
Confidence            87765443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=95.65  E-value=0.12  Score=42.89  Aligned_cols=86  Identities=15%  Similarity=0.073  Sum_probs=70.8

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|.+.+...+..++..+...|+.++|++....+-  ....+..+++++..|+..++.++ ..++.+...+++.++++++
T Consensus       105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~  183 (436)
T 3qov_A          105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALH  183 (436)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEE
T ss_pred             EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEE
Confidence            48999999988888888888899999999998874  34455677888999999887765 4778899999999999999


Q ss_pred             Eccchhhhh
Q psy4550         117 TKGEYMDRL  125 (251)
Q Consensus       117 ~~~~~~~~~  125 (251)
                      ..+.....+
T Consensus       184 ~~P~~~~~l  192 (436)
T 3qov_A          184 AIPSYAIRL  192 (436)
T ss_dssp             CCHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            887755443

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.17  E-value=1.6  Score=36.81  Aligned_cols=97  Identities=9%  Similarity=0.026  Sum_probs=71.5

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCC
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLET   96 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~   96 (251)
                      .++.+|++. ..|       -.+|.+.+...+..+..   ..++.++|++...+|-. .-.+..+++.+..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            456777653 223       24899998877665543   45888999999888854 333445778889999888775 


Q ss_pred             CCCHHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550          97 SYPPALLESVLDDAKPSIVITKGEYMDRLE  126 (251)
Q Consensus        97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  126 (251)
                      ..+++.+...+++.++++++..+.....+.
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  266 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWLM  266 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence            478999999999999999999877665543

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=92.80  E-value=1.1  Score=36.24  Aligned_cols=111  Identities=12%  Similarity=-0.032  Sum_probs=70.4

Q ss_pred             CCcCchhhhHHHHHHHHHHhCCCceEEEe-cC---C----CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HH
Q psy4550           6 LSDYDAEGALHYMFRNQAKRTPDKIAVVD-HD---G----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LE   76 (251)
Q Consensus         6 ~~~~~~~~~l~~~l~~~~~~~~~~~a~~~-~~---~----~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~   76 (251)
                      .|..|......+.+.++..   +.+|++- ..   |    -.+|.+.+...+..++.   ..++.++|++...+|-. .-
T Consensus        18 ~p~~p~~~~~~~~~~~w~~---d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~   91 (358)
T 4gs5_A           18 RPRNPYFAQAYDFMEKWLG---GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIA   91 (358)
T ss_dssp             CCSSHHHHHHHHHHHHHHH---TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHH
T ss_pred             CCCCCcccchhhHhhccCC---CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHH
Confidence            4445555566666666544   4445442 22   2    35999998877655543   35889999999888844 33


Q ss_pred             HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550          77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus        77 ~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                      .+..++..+..|+..+..++...   ....++..+++.+...+.....+
T Consensus        92 gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~l  137 (358)
T 4gs5_A           92 GLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSI  137 (358)
T ss_dssp             HHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHh
Confidence            34556667778887776665433   23457788888888776654443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=92.08  E-value=0.62  Score=37.63  Aligned_cols=85  Identities=8%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccC--CHHHHHHHHHHHHHCCeEeeCCCCCCHH---------------
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER--CLEWTISYIAIHKAGGGYLPLETSYPPA---------------  101 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~--~~~~~~~~~a~~~~G~~~v~i~~~~~~~---------------  101 (251)
                      .+|.+.+...+..++..+...|+.++|++..+.+-  ...-....++++..|+.+++..  .++.               
T Consensus       110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~  187 (369)
T 3hgu_A          110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVR  187 (369)
T ss_dssp             EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHH
T ss_pred             EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhH
Confidence            48999998888877777778899999999999886  3333445556688898655543  3444               


Q ss_pred             --------HHHHHHhhcCccEEEEccchhhhh
Q psy4550         102 --------LLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus       102 --------~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                              .+...+++.++++++..+.....+
T Consensus       188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l  219 (369)
T 3hgu_A          188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL  219 (369)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence                    677799999999999887765544

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=90.65  E-value=2.1  Score=36.68  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CceEEEec-CC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HHHHHHHHHHCCeEeeCCCC
Q psy4550          28 DKIAVVDH-DG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TISYIAIHKAGGGYLPLETS   97 (251)
Q Consensus        28 ~~~a~~~~-~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~i~~~   97 (251)
                      +.+|++.. .|       -.+|.+.+...+......+...++.++|++...+|-.-.+  ...+++.+ .|+..+..+ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            67777632 22       3589999887766554443335788999998888855333  23356667 998888775 5


Q ss_pred             CCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550          98 YPPALLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus        98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                      .+++.+...+++.++++++..+.....+
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l  297 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAIL  297 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence            7899999999999999999887765544

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=89.85  E-value=2.5  Score=36.14  Aligned_cols=86  Identities=7%  Similarity=-0.032  Sum_probs=64.5

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCC-HHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC-LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|.+.+..........+...++.++|++...+|-. .-.+...++.+..|+..+..+ ..+++.+...+++.++++++.
T Consensus       209 ~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~  287 (550)
T 3rix_A          209 ALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALL  287 (550)
T ss_dssp             EEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEE
T ss_pred             hhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEe
Confidence            589998877665554444345788999999888854 333456677889999888764 578899999999999999998


Q ss_pred             ccchhhhh
Q psy4550         118 KGEYMDRL  125 (251)
Q Consensus       118 ~~~~~~~~  125 (251)
                      .+.....+
T Consensus       288 ~P~~~~~l  295 (550)
T 3rix_A          288 VPTLFSFF  295 (550)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            87665443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=89.62  E-value=4.9  Score=34.22  Aligned_cols=96  Identities=10%  Similarity=-0.020  Sum_probs=68.8

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH--HH-HHHHHHHHCCeEeeC
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW--TI-SYIAIHKAGGGYLPL   94 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~--~~-~~~a~~~~G~~~v~i   94 (251)
                      .++.+|++. ..|       -.+|.+.+...+.....   ..++.++|++...+|-.-.+  .. .+++.+..|+..+..
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            346666653 223       24899988777655543   34788999999888855333  22 478888999988876


Q ss_pred             CCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550          95 ETSYPPALLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus        95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                      + ..+++.+...+++.++++++..+.....+
T Consensus       257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  286 (539)
T 1mdb_A          257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW  286 (539)
T ss_dssp             S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence            4 46889999999999999999887655443

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=89.46  E-value=4.4  Score=34.56  Aligned_cols=94  Identities=12%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeEeeCC
Q psy4550          27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGYLPLE   95 (251)
Q Consensus        27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~v~i~   95 (251)
                      ++.+|++. ..|       -.+|.+.+...+...+.   ..++.++|++...+|-...+-.   .+++.+..|+..+..+
T Consensus       190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  266 (544)
T 3o83_A          190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP  266 (544)
T ss_dssp             TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             ccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence            46677653 223       25899998877766544   3478899999999886544432   4788888998888664


Q ss_pred             CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550          96 TSYPPALLESVLDDAKPSIVITKGEYMDR  124 (251)
Q Consensus        96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  124 (251)
                       ...+..+...++..+++.+...+.....
T Consensus       267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~  294 (544)
T 3o83_A          267 -NPEPLNCFSIIQRHQVNMASLVPSAVIM  294 (544)
T ss_dssp             -SCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred             -CCCHHHHHHHHHHHCCCEEEechHHHHH
Confidence             4688889999999999999987765433

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=88.59  E-value=5  Score=33.97  Aligned_cols=82  Identities=5%  Similarity=-0.040  Sum_probs=61.1

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HH-HHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TI-SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI  116 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~-~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  116 (251)
                      .+|.+.+...+..++..   .++.++|++...+|-.-.+ +. .+++.+ .|+..+.. +...+..+...++..+++++.
T Consensus       189 ~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~  263 (517)
T 3r44_A          189 VHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIGG  263 (517)
T ss_dssp             EEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEEE
T ss_pred             eeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEEE
Confidence            48999988777665544   4888999999988865333 22 244444 88888866 457899999999999999999


Q ss_pred             Eccchhhhh
Q psy4550         117 TKGEYMDRL  125 (251)
Q Consensus       117 ~~~~~~~~~  125 (251)
                      ..+.....+
T Consensus       264 ~~P~~~~~l  272 (517)
T 3r44_A          264 AVPAILNFM  272 (517)
T ss_dssp             ECHHHHHHH
T ss_pred             eHHHHHHHH
Confidence            887765443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=87.32  E-value=8.2  Score=32.49  Aligned_cols=83  Identities=10%  Similarity=0.020  Sum_probs=57.9

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHH-HHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW-TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|.+.+...+..+..   ..++.++|++...+|-.-.+ +...+.+...|+..+.+. ..+++.+...++..+++++..
T Consensus       179 ~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~  254 (509)
T 3ivr_A          179 LISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAE  254 (509)
T ss_dssp             EEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEE
T ss_pred             EEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEe
Confidence            5899998877666544   45788999999988854332 333444444444444444 678999999999999999988


Q ss_pred             ccchhhhh
Q psy4550         118 KGEYMDRL  125 (251)
Q Consensus       118 ~~~~~~~~  125 (251)
                      .+.....+
T Consensus       255 ~p~~~~~l  262 (509)
T 3ivr_A          255 FAPMLGNI  262 (509)
T ss_dssp             ETTHHHHH
T ss_pred             cHHHHHHH
Confidence            76654443

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=87.18  E-value=2.7  Score=35.48  Aligned_cols=96  Identities=13%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCC
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLET   96 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~   96 (251)
                      .++.++++. ..|       -.+|.+.+...+.....   ..++.++|++...+|-+. -.+..+++.+..|+..+.+++
T Consensus       142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            345666653 233       24899988876655443   457889999999988553 334567888899999887765


Q ss_pred             C--CCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550          97 S--YPPALLESVLDDAKPSIVITKGEYMDR  124 (251)
Q Consensus        97 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~  124 (251)
                      .  ..+..+...++..++++++..+.....
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  248 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEM  248 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHH
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence            3  578889999999999999988766544

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=84.62  E-value=16  Score=31.65  Aligned_cols=94  Identities=9%  Similarity=0.040  Sum_probs=67.5

Q ss_pred             CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHH---HHHHHHHHCCeEeeCC
Q psy4550          27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI---SYIAIHKAGGGYLPLE   95 (251)
Q Consensus        27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~---~~~a~~~~G~~~v~i~   95 (251)
                      ++.+|++- ..|       -.+|.+.+...+......   .++.++|++....+-+..+-.   .+++.+..|+..+..+
T Consensus       183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~  259 (617)
T 3rg2_A          183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA  259 (617)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred             CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence            46667653 223       358999888777655443   478899999999885543322   4788888998888765


Q ss_pred             CCCCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550          96 TSYPPALLESVLDDAKPSIVITKGEYMDR  124 (251)
Q Consensus        96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  124 (251)
                      . .+...+...++..+++++...+.....
T Consensus       260 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~  287 (617)
T 3rg2_A          260 D-PSATLCFPLIEKHQVNVTALVPPAVSL  287 (617)
T ss_dssp             S-CCHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred             C-CCHHHHHHHHHHhCCcEEEcchHHHHH
Confidence            4 578888899999999999987765443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=84.59  E-value=5.2  Score=34.38  Aligned_cols=94  Identities=10%  Similarity=-0.024  Sum_probs=68.1

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCC
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLE   95 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~   95 (251)
                      .++.+|++. ..|       -.+|.+.+...+.....   ..++.++|++...+|-.-.+-  ..+++.+..|+..+..+
T Consensus       165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~  241 (590)
T 3kxw_A          165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS  241 (590)
T ss_dssp             CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred             CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence            356677653 223       24899999887766544   457889999999988664442  33788899999988776


Q ss_pred             CCC---CHHHHHHHHhhcCccEEEEccchh
Q psy4550          96 TSY---PPALLESVLDDAKPSIVITKGEYM  122 (251)
Q Consensus        96 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~  122 (251)
                      +..   .+..+...++..+++++...+...
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~  271 (590)
T 3kxw_A          242 PFSFLQNPLSWLKHITKYKATISGSPNFAY  271 (590)
T ss_dssp             HHHHHHCTHHHHHHHHHHTCSEEEECTHHH
T ss_pred             HHHHHHCHHHHHHHHHHhCCeeecCChhHH
Confidence            532   677888999999999988766543

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=83.98  E-value=6.7  Score=33.08  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCH-HHHHHHHHHHHHCCeEeeCCC
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL-EWTISYIAIHKAGGGYLPLET   96 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~i~~   96 (251)
                      .++.++++. ..|       -.+|.+.+...+..+..   ..++.++|++...+|-+. -.+..+++++..|+..+..+.
T Consensus       141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  217 (511)
T 3e7w_A          141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK  217 (511)
T ss_dssp             CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence            345666653 223       24899988876655543   457889999999888553 334567888999998887754


Q ss_pred             C--CCHHHHHHHHhhcCccEEEEccchhhh
Q psy4550          97 S--YPPALLESVLDDAKPSIVITKGEYMDR  124 (251)
Q Consensus        97 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~  124 (251)
                      .  ..+..+...++..++++++..+.....
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  247 (511)
T 3e7w_A          218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQM  247 (511)
T ss_dssp             HHHHSHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred             hhhcCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence            3  467888999999999999987766544

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=83.72  E-value=7.2  Score=31.09  Aligned_cols=91  Identities=10%  Similarity=-0.086  Sum_probs=57.6

Q ss_pred             CceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550          28 DKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQG-CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES  105 (251)
Q Consensus        28 ~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g-~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~  105 (251)
                      .++.+...+ +.+=|++.-  .+..+.....+.| +++|+.|.+....+---..+.++|...|..++.+-|...+..-..
T Consensus        35 ~~i~~K~E~~~ptGSfK~R--~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~  112 (334)
T 3tbh_A           35 AKVVLKMECENPMASVKDR--LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC  112 (334)
T ss_dssp             SEEEEEEGGGSTTSBTHHH--HHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred             CEEEEEeCCCCCccCcHHH--HHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence            456665322 223344432  2222223344555 488888655555566667778888888987776666656666677


Q ss_pred             HHhhcCccEEEEccc
Q psy4550         106 VLDDAKPSIVITKGE  120 (251)
Q Consensus       106 ~l~~~~~~~vi~~~~  120 (251)
                      .++..++++++++..
T Consensus       113 ~~~~~GA~V~~~~~~  127 (334)
T 3tbh_A          113 LLRIFGAEVILTPAA  127 (334)
T ss_dssp             HHHHTTCEEEEECGG
T ss_pred             HHHHCCCEEEEECCC
Confidence            889999999999754

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=82.80  E-value=0.51  Score=40.99  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=27.1

Q ss_pred             CCCCCCeEEEEeccCCC-CCCceEEeccHHHHH
Q psy4550         157 QVGLDDIAYIVYSSGTT-GKPKGIVCPHRGAVH  188 (251)
Q Consensus       157 ~~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~  188 (251)
                      ...++.+..+.-||||| |+||-+.+|...+-.
T Consensus        95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            34667788999999999 789999999998765

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=82.70  E-value=6.9  Score=32.92  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CCCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEccCCHHH--HHHHHHHHHHCCeEee
Q psy4550          26 TPDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGC--IVGSTVGVLMERCLEW--TISYIAIHKAGGGYLP   93 (251)
Q Consensus        26 ~~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~--~~g~~V~l~~~~~~~~--~~~~~a~~~~G~~~v~   93 (251)
                      .|+.+|++- ..|       -.+|.+.+...+..+..   ..++  .++|++...+|-.-.+  ...+++.+..|+..+.
T Consensus       151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  227 (504)
T 1t5h_X          151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV  227 (504)
T ss_dssp             CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence            456677653 223       24899888776655433   3466  7889988888855333  2457888889998887


Q ss_pred             CCCCCCHHHHHHHHhhcCccEEEEccchhhhh
Q psy4550          94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL  125 (251)
Q Consensus        94 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  125 (251)
                      .+. ..+..+...+++.++++++..+.....+
T Consensus       228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l  258 (504)
T 1t5h_X          228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDAL  258 (504)
T ss_dssp             CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred             CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence            754 6888999999999999999887665544

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=82.57  E-value=12  Score=32.15  Aligned_cols=97  Identities=7%  Similarity=-0.018  Sum_probs=66.1

Q ss_pred             CCceEEEe-cCC-------CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHH--HHHHHHHHHCCeEeeCCC
Q psy4550          27 PDKIAVVD-HDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT--ISYIAIHKAGGGYLPLET   96 (251)
Q Consensus        27 ~~~~a~~~-~~~-------~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~--~~~~a~~~~G~~~v~i~~   96 (251)
                      ++.+|++- ..|       -.+|.+ +......  ......++.++|++....+-.-.+-  ..+++.+..|+..+..+.
T Consensus       205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  281 (570)
T 3c5e_A          205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL  281 (570)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred             CCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence            45666653 223       248888 4432111  1124568899999988888654432  356788888988776653


Q ss_pred             -CCCHHHHHHHHhhcCccEEEEccchhhhhh
Q psy4550          97 -SYPPALLESVLDDAKPSIVITKGEYMDRLE  126 (251)
Q Consensus        97 -~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  126 (251)
                       ...+..+...++..++++++..+.....+.
T Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  312 (570)
T 3c5e_A          282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLL  312 (570)
T ss_dssp             SSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence             678999999999999999998877665543

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=81.94  E-value=9  Score=32.65  Aligned_cols=83  Identities=12%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHH-HHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEE
Q psy4550          39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE-WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT  117 (251)
Q Consensus        39 ~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  117 (251)
                      .+|.+.+...+..++..   .++.++|++...+|-.-. .+..++.++..|+..+..+ ..+++.+...++..++++++.
T Consensus       199 ~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~  274 (549)
T 3g7s_A          199 MLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWA  274 (549)
T ss_dssp             EEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEE
T ss_pred             EEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEe
Confidence            58999998877766543   478899999888885433 2344677788898888765 678899999999999999998


Q ss_pred             ccchhhhh
Q psy4550         118 KGEYMDRL  125 (251)
Q Consensus       118 ~~~~~~~~  125 (251)
                      .+.....+
T Consensus       275 ~P~~~~~l  282 (549)
T 3g7s_A          275 VPPALNVL  282 (549)
T ss_dssp             CHHHHHHH
T ss_pred             CCHHHHHH
Confidence            87655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-37
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	9e-36
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-32
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-32
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-30
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	5e-29
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-28

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  135 bits (340), Expect = 2e-37
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 10/237 (4%)

Query: 8   DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           +Y  +  +H +F  Q  + P+ +A+V  +   +T+ +L+   + +    I +G    + V
Sbjct: 18  EYPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLV 76

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
           G++ME+ ++  I  +A+ KAGG Y+P++  YP   ++ +LDD++  +++T+   +  +  
Sbjct: 77  GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136

Query: 128 TSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAV 187
                     +  +  I E   LH          D+AY++Y+SGTTG PKG +  H+G  
Sbjct: 137 IQFNGQVEIFEEDTIKIREGTNLH----VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS 192

Query: 188 HAYKWRHRAYPYDEDDREACN-----VFFVWEMLRPLTQGIPMYVISDEVIYDPPRL 239
           +   +   +    E DR            VWEM   L  G  +Y+I  + I D  + 
Sbjct: 193 NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF 249

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  132 bits (332), Expect = 9e-36
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 39/263 (14%)

Query: 22  QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
             +   D+ A++         + I++++L          L++ G   G  V + M    E
Sbjct: 81  HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE 140

Query: 77  WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-------------D 123
             ++ +A  + G  +  +   + P  +   + D+   +VIT  E +             D
Sbjct: 141 AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDD 200

Query: 124 RLERTSVPKVK--------------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169
            L+  +V  V+               E   L       +         +  +D  +I+Y+
Sbjct: 201 ALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 260

Query: 170 SGTTGKPKGIVCPHRGA-VHAYKWRHRAYPYDEDDREAC--NVFFV----WEMLRPLTQG 222
           SG+TGKPKG++    G  V+A       + Y   D   C  +V +V    + +  PL  G
Sbjct: 261 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 320

Query: 223 IPMYVISDEVIYDPPRLTSGWVR 245
               +      +  P      V 
Sbjct: 321 ATTLMFEGVPNWPTPARMCQVVD 343

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  122 bits (305), Expect = 1e-32
 Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 3/227 (1%)

Query: 15  LHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
           ++ M R  A R PD  A+     G  +T  +L    + V   L   G      V V+   
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63

Query: 74  CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRLERTSVP 131
             +  I+ +A+H+ G     L      A L  ++   + +  +     +  D + ++   
Sbjct: 64  SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSG 123

Query: 132 KVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK 191
              +    L +          ++ PQ      A+I Y+SGTTG PK  + P R A     
Sbjct: 124 ARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL 183

Query: 192 WRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPR 238
           +                       +      +   +  D        
Sbjct: 184 FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  122 bits (305), Expect = 2e-32
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 11/242 (4%)

Query: 15  LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
              + R++A +  D+IA+        ++++LD   D +       G      V V +   
Sbjct: 27  FGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85

Query: 75  LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
            E+     A+ + G   +    S+  + +    + A+ +  I    Y     R+   +V+
Sbjct: 86  KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ 145

Query: 135 LENDFLSKMISENEKLH----------NVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHR 184
            +   L  +I   E              V  P+V   D+A++  S G+TG  K I   H 
Sbjct: 146 SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHD 205

Query: 185 GAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPPRLTSGWV 244
             +++ K        D        +             + +      V+  P        
Sbjct: 206 DYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265

Query: 245 RL 246
            L
Sbjct: 266 PL 267

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  115 bits (289), Expect = 3e-30
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 10/239 (4%)

Query: 9   YDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGS 65
            D E  L       A     K  V           T+ ++ +    +   L   G  VG 
Sbjct: 7   MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66

Query: 66  TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
            V  L         +Y A+   G           P  +  +L+ A+  +++     +  +
Sbjct: 67  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126

Query: 126 E--RTSVPKVKL-----ENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKG 178
           E  R  +  V+      E      +  E       D  +V       + Y++GTTG PKG
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKG 186

Query: 179 IVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVWEMLRPLTQGIPMYVISDEVIYDPP 237
           +V  HR  V               +++          +          ++  + +   P
Sbjct: 187 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 245

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 5e-29
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 40/258 (15%)

Query: 22  QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCL 75
            A +TP+K A++        G SIT+K+L E    V   L  + G   G TV V M    
Sbjct: 68  HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 127

Query: 76  EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
           E  I+ +AI + G  +  +   +    L   ++D    +VIT  E     +     ++  
Sbjct: 128 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 187

Query: 136 ENDFLSKMISENEKLHNVDFPQVGLD--------------------------DIAYIVYS 169
           +    +  +         + P V                             D  +++Y+
Sbjct: 188 DALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYT 247

Query: 170 SGTTGKPKGIVCPHRGAVHAYKWRHR-AYPYDEDDRE------ACNVFFVWEMLRPLTQG 222
           SG+TG PKG+     G +       R  +   ++D               + +  PL  G
Sbjct: 248 SGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307

Query: 223 IPMYVI-SDEVIYDPPRL 239
               V        +  R 
Sbjct: 308 CATLVFEGTPAYPNYSRY 325

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  110 bits (275), Expect = 3e-28
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 22/224 (9%)

Query: 12  EGALHYMFRNQAKR---TPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
           +G          KR    P  IA  D H   +IT+ +  E +  +   +   G      +
Sbjct: 16  DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75

Query: 68  GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE- 126
            V  E  L++ +  +     G    P    Y    L + ++ ++P++V    + + ++  
Sbjct: 76  VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135

Query: 127 -RTSVPKVK----------------LENDFLSKMISENEKLHNVDFPQVGLDDIAYIVYS 169
            +  +P ++                +     S +     +   V         IA I+ S
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 195

Query: 170 SGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFFVW 213
           SG+TG PKG+  PHR A   +         ++   +   +  V 
Sbjct: 196 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.49
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	86.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.2
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.39
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	84.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.05
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	82.03
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.52
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.2
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.73

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.9e-37  Score=263.82  Aligned_cols=238  Identities=24%  Similarity=0.444  Sum_probs=193.1

Q ss_pred             CcCchhhhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHH
Q psy4550           7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK   86 (251)
Q Consensus         7 ~~~~~~~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~   86 (251)
                      ..+|...||.++|.++++++||++|+++ +++++||+||.++++++|.+|+++|+++||+|+++++|+++++++++||++
T Consensus        17 ~~~~~~~tl~~l~~~~a~~~Pd~~Al~~-~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~   95 (514)
T d1amua_          17 AEYPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK   95 (514)
T ss_dssp             CCCCTTCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHhCCCCeEEEE-CCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence            4567888999999999999999999985 778999999999999999999999999999999999999999999999999


Q ss_pred             HCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEE
Q psy4550          87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYI  166 (251)
Q Consensus        87 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  166 (251)
                      +|++++|+++.++.+++.++++.++++++|++....+.+.................    ..........+..++++++|
T Consensus        96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~d~a~i  171 (514)
T d1amua_          96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTI----KIREGTNLHVPSKSTDLAYV  171 (514)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTT----TTSCCSCCCCCCCTTSEEEE
T ss_pred             hCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccc----cccccccCCCCCCcccceEE
Confidence            99999999999999999999999999999999988776654433222211111100    11111123334567899999


Q ss_pred             EeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCccccCchHHHh
Q psy4550         167 VYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDEVIYDPPRLTS  241 (251)
Q Consensus       167 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~  241 (251)
                      +|||||||.||+|++||.++...+......++...++++++.+++     ...++.++..|+++++.+.....+...+++
T Consensus       172 ~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  251 (514)
T d1amua_         172 IYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQ  251 (514)
T ss_dssp             EEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHH
T ss_pred             EEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccchhhhhh
Confidence            999999999999999999999999999999999999998775533     456788899999999988655567788888


Q ss_pred             hhhccccC
Q psy4550         242 GWVRLPLN  249 (251)
Q Consensus       242 ~i~~~~vt  249 (251)
                      .+..+.++
T Consensus       252 ~~~~~~~~  259 (514)
T d1amua_         252 YINQKEIT  259 (514)
T ss_dssp             HHHHTTCC
T ss_pred             hhhhhhcc
Confidence            88877664

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.5e-37  Score=265.19  Aligned_cols=233  Identities=17%  Similarity=0.155  Sum_probs=185.0

Q ss_pred             hhHHHHHHHHHHhCCCceEEEecCCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEe
Q psy4550          13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL   92 (251)
Q Consensus        13 ~~l~~~l~~~~~~~~~~~a~~~~~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v   92 (251)
                      .|+.++|.++++++||++|+++ +++++||+||.+++.++|++|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~v  103 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV  103 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE-CCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence            4899999999999999999996 667899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc----------CCCeeeecchhhhhhhhhhhcccCCCCCCCCCCC
Q psy4550          93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT----------SVPKVKLENDFLSKMISENEKLHNVDFPQVGLDD  162 (251)
Q Consensus        93 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (251)
                      |++|..+.+++.++++.++++++++++.........          ...............................+++
T Consensus       104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  183 (536)
T d1mdba_         104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSD  183 (536)
T ss_dssp             ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCCCCCCCCTTS
T ss_pred             ecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcccCCcCCCccCccc
Confidence            999999999999999999999999986543321110          0011110000000000011111223445567899


Q ss_pred             eEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhCCCCCCChhhhhHHH--HH-----HHHHhhhcCccEEEecCccccC
Q psy4550         163 IAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYDEDDREACNVFF--VW-----EMLRPLTQGIPMYVISDEVIYD  235 (251)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~l~~G~~~v~~~~~~~~~  235 (251)
                      +++|+|||||||.||||++||+++..++......+++.++|++++..++  .+     .+...+..|.+++..+.   ++
T Consensus       184 ~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~---~~  260 (536)
T d1mdba_         184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS---PS  260 (536)
T ss_dssp             EEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS---SS
T ss_pred             hHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCC---CC
Confidence            9999999999999999999999999999999999999999998775433  11     23444555777777666   89


Q ss_pred             chHHHhhhhccccC
Q psy4550         236 PPRLTSGWVRLPLN  249 (251)
Q Consensus       236 ~~~~~~~i~~~~vt  249 (251)
                      +..+++.+++++++
T Consensus       261 ~~~~~~~~~~~~~~  274 (536)
T d1mdba_         261 PDDAFPLIEREKVT  274 (536)
T ss_dssp             HHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhhhccc
Confidence            99999999999987

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=6.5e-37  Score=268.07  Aligned_cols=235  Identities=19%  Similarity=0.245  Sum_probs=178.8

Q ss_pred             HHHHHHHHHhCCCceEEEecC-----CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          16 HYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        16 ~~~l~~~~~~~~~~~a~~~~~-----~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ..++.++++++||++|++...     .+++||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus        75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav  154 (643)
T d1pg4a_          75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV  154 (643)
T ss_dssp             HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence            456667788899999998421     257999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhh-------------cc---CCCee-eecch-----h-----hhhh
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE-------------RT---SVPKV-KLEND-----F-----LSKM  143 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------------~~---~~~~~-~~~~~-----~-----~~~~  143 (251)
                      ++|++|.++++++.+++++++++++|++++......             ..   ....+ .....     +     ....
T Consensus       155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  234 (643)
T d1pg4a_         155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR  234 (643)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHH
T ss_pred             EEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhh
Confidence            999999999999999999999999999875322111             00   11111 11100     0     0000


Q ss_pred             hhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHH-HHHHHHhCCCCCCChhhhhHHH------HHHHH
Q psy4550         144 ISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHA-YKWRHRAYPYDEDDREACNVFF------VWEML  216 (251)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~  216 (251)
                      ................++++++|+|||||||.||||+++|++++.. .......+++.++|++++.++.      .+.++
T Consensus       235 ~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~  314 (643)
T d1pg4a_         235 DLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY  314 (643)
T ss_dssp             HHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTH
T ss_pred             hhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Confidence            0011111223344567789999999999999999999999997655 4455667899999998765432      23467


Q ss_pred             HhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550         217 RPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       217 ~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~  250 (251)
                      .+|+.|+++++.+. ...++|..+++.|++++||.
T Consensus       315 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~  349 (643)
T d1pg4a_         315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNI  349 (643)
T ss_dssp             HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSE
T ss_pred             HHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcE
Confidence            78999999999764 22468999999999999983

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-36  Score=264.47  Aligned_cols=237  Identities=22%  Similarity=0.211  Sum_probs=180.7

Q ss_pred             hHHHHHHHHHHhCCCceEEEec-----CCCeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEccCCHHHHHHHHHHHHH
Q psy4550          14 ALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHKA   87 (251)
Q Consensus        14 ~l~~~l~~~~~~~~~~~a~~~~-----~~~~~T~~~l~~~~~~~a~~L~-~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~   87 (251)
                      ....+|.++++++|+++|++..     +++++||+||.+++.++|++|+ ++|+++||+|+++++|+++++++++||+++
T Consensus        60 ~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~  139 (640)
T d1ry2a_          60 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI  139 (640)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccC
Confidence            3477888999999999999832     2367999999999999999997 679999999999999999999999999999


Q ss_pred             CCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc--------------CCCeeeec------------chhhh
Q psy4550          88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT--------------SVPKVKLE------------NDFLS  141 (251)
Q Consensus        88 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------------~~~~~~~~------------~~~~~  141 (251)
                      |++++|+++.++++++.++++++++++++++..........              ........            .....
T Consensus       140 Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (640)
T d1ry2a_         140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD  219 (640)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred             ceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccc
Confidence            99999999999999999999999999999987543221100              00000000            00000


Q ss_pred             hhhhhhhcccCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHH-HHHHhCCCCCCChhhhhHHH------HHH
Q psy4550         142 KMISENEKLHNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYK-WRHRAYPYDEDDREACNVFF------VWE  214 (251)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~  214 (251)
                      ..................++++++|+|||||||.||||+++|++++.+.. .....+++.++|++++.+|+      .+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~  299 (640)
T d1ry2a_         220 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYV  299 (640)
T ss_dssp             HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHT
T ss_pred             ccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHH
Confidence            11111111222334456678999999999999999999999999877654 44457789999999875543      234


Q ss_pred             HHHhhhcCccEEEecC-ccccCchHHHhhhhccccCC
Q psy4550         215 MLRPLTQGIPMYVISD-EVIYDPPRLTSGWVRLPLNG  250 (251)
Q Consensus       215 ~~~~l~~G~~~v~~~~-~~~~~~~~~~~~i~~~~vt~  250 (251)
                      ++.++..|+++++.+. ...+++..+++.|++++||.
T Consensus       300 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~  336 (640)
T d1ry2a_         300 VYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ  336 (640)
T ss_dssp             THHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSE
T ss_pred             HHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccE
Confidence            6778999999888775 22348999999999999983

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-35  Score=253.51  Aligned_cols=239  Identities=18%  Similarity=0.132  Sum_probs=186.0

Q ss_pred             CchhhhHHHHHHHHHHhCCCceEEEecCC---CeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHH
Q psy4550           9 YDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH   85 (251)
Q Consensus         9 ~~~~~~l~~~l~~~~~~~~~~~a~~~~~~---~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~   85 (251)
                      ++...|++++|.+.++++||++|+++.++   +++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         7 ~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~   86 (534)
T d1v25a_           7 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVP   86 (534)
T ss_dssp             CCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            34455899999999999999999986443   359999999999999999999999999999999999999999999999


Q ss_pred             HHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhccC-----CCeeeec-ch-hhhhhhhhhhcccCCCCCCC
Q psy4550          86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS-----VPKVKLE-ND-FLSKMISENEKLHNVDFPQV  158 (251)
Q Consensus        86 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  158 (251)
                      ++|++++|++|.++.+++.++++.+++++++++...........     ....... .. ....................
T Consensus        87 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (534)
T d1v25a_          87 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRV  166 (534)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCC
T ss_pred             HhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccccccccccccccccccccc
Confidence            99999999999999999999999999999999988766544321     1111111 11 11111111112222344556


Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH--HhCCCCCCChhhhhHHH-----HHHHHHhhhcCccEEEecCc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH--RAYPYDEDDREACNVFF-----VWEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~l~~G~~~v~~~~~  231 (251)
                      .++++++++|||||||.||||+++|.+++..+....  ..+.....+++++++|+     ....+..+..|++.++.++ 
T Consensus       167 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~-  245 (534)
T d1v25a_         167 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP-  245 (534)
T ss_dssp             CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT-
T ss_pred             ccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccc-
Confidence            778999999999999999999999999987654443  34456778888776543     2334666777777777665 


Q ss_pred             cccCchHHHhhhhccccC
Q psy4550         232 VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt  249 (251)
                       .+++..+...++++++|
T Consensus       246 -~~~~~~~~~~~~~~~vt  262 (534)
T d1v25a_         246 -RLDPASLVELFDGEGVT  262 (534)
T ss_dssp             -CCSHHHHHHHHHHTTCC
T ss_pred             -cccccccchhhhhcccc
Confidence             48999999999999997

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.2e-34  Score=246.02  Aligned_cols=234  Identities=18%  Similarity=0.184  Sum_probs=183.0

Q ss_pred             hhhHHHHHHHHHHhCCCceEEEec-CCCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCe
Q psy4550          12 EGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG   90 (251)
Q Consensus        12 ~~~l~~~l~~~~~~~~~~~a~~~~-~~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~   90 (251)
                      ++|+.++|.++++++||++|+++. +++++||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v   80 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV   80 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence            468999999999999999999874 4678999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhh--h-ccCCCeeeecchhhhhhhhhhhcccCCCCCCCCCCCeEEEE
Q psy4550          91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL--E-RTSVPKVKLENDFLSKMISENEKLHNVDFPQVGLDDIAYIV  167 (251)
Q Consensus        91 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  167 (251)
                      ++|++|.++++++.++++.++++++|++.......  . ......+....+....... .............++++++++
T Consensus        81 ~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~i~  159 (503)
T d3cw9a1          81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIF  159 (503)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEE-CCCSCCCCCCCCCTTSEEEEE
T ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhcc-cccCCccccccchhhhhhhhc
Confidence            99999999999999999999999999987642211  1 1112222221111111110 111122334456778999999


Q ss_pred             eccCCCCCCceEEeccHHHHHHHHHHHHhCCCC--CCChhhhhHHH------HHHHHHhhhcCccEEEecCccccCchHH
Q psy4550         168 YSSGTTGKPKGIVCPHRGAVHAYKWRHRAYPYD--EDDREACNVFF------VWEMLRPLTQGIPMYVISDEVIYDPPRL  239 (251)
Q Consensus       168 ~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~l~~G~~~v~~~~~~~~~~~~~  239 (251)
                      |||||||.||+|+++|+++..++......+...  ..++.++.+++      ....+.+...++++++.+.   +++..+
T Consensus       160 ~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  236 (503)
T d3cw9a1         160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE---FRPVDA  236 (503)
T ss_dssp             EECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSS---CCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccc---cChHHh
Confidence            999999999999999999999998888766543  33555444332      2234666777888888887   999999


Q ss_pred             HhhhhccccC
Q psy4550         240 TSGWVRLPLN  249 (251)
Q Consensus       240 ~~~i~~~~vt  249 (251)
                      ...+.+++++
T Consensus       237 ~~~i~~~~~~  246 (503)
T d3cw9a1         237 LQLVQQEQVT  246 (503)
T ss_dssp             HHHHHHHTCC
T ss_pred             hhhhhhceee
Confidence            9999998876

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=3.7e-34  Score=245.70  Aligned_cols=234  Identities=19%  Similarity=0.237  Sum_probs=176.9

Q ss_pred             hhHHHHHHHHHHhC---CCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHC
Q psy4550          13 GALHYMFRNQAKRT---PDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG   88 (251)
Q Consensus        13 ~~l~~~l~~~~~~~---~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G   88 (251)
                      .++.++|.+.++++   |+.+|++|.. ++++||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus        17 ~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G   96 (541)
T d1lcia_          17 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG   96 (541)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            57888888888877   7888998744 5689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhhhhhcc-----CCCeeeec-c--------hhhhhhhhh----hhcc
Q psy4550          89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT-----SVPKVKLE-N--------DFLSKMISE----NEKL  150 (251)
Q Consensus        89 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~-~--------~~~~~~~~~----~~~~  150 (251)
                      ++++|+++.++.+++.++++.++++++|++++..+.+.+.     ....+... .        .+.......    ....
T Consensus        97 ~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (541)
T d1lcia_          97 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEY  176 (541)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTT
T ss_pred             eEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhcccccccc
Confidence            9999999999999999999999999999998876654332     11111111 0        111111111    1111


Q ss_pred             cCCCCCCCCCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHHHhC---CCCCCChhhhhHHH-----HHHHHHhhhcC
Q psy4550         151 HNVDFPQVGLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRHRAY---PYDEDDREACNVFF-----VWEMLRPLTQG  222 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~l~~G  222 (251)
                      ...+.....++++++|+|||||||.||||+++|++++..........   .+.+++++++++|+     ....+..+..|
T Consensus       177 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  256 (541)
T d1lcia_         177 DFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICG  256 (541)
T ss_dssp             TCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred             ccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccc
Confidence            12233445668899999999999999999999999988776655433   46677887765543     33456777788


Q ss_pred             ccEEEecCccccCchHHHhhhhccccC
Q psy4550         223 IPMYVISDEVIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       223 ~~~v~~~~~~~~~~~~~~~~i~~~~vt  249 (251)
                      +.++....   .++......+.++++|
T Consensus       257 ~~~~~~~~---~~~~~~~~~~~~~~~t  280 (541)
T d1lcia_         257 FRVVLMYR---FEEELFLRSLQDYKIQ  280 (541)
T ss_dssp             CEEEECSS---CCHHHHHHHHHHTTCS
T ss_pred             cccccccc---cccchhHHHHhhhhcc
Confidence            88888776   8999999999999887

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.49  E-value=0.77  Score=31.01  Aligned_cols=65  Identities=15%  Similarity=-0.030  Sum_probs=43.2

Q ss_pred             HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEccchhh
Q psy4550          56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD  123 (251)
Q Consensus        56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  123 (251)
                      |++.++++||+|+|....+.--..++..+...|+.++.+..  +++. ...++..+++.++...+..+
T Consensus        20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~--~~~~-~~~~~~lGa~~~i~~~~~~~   84 (171)
T d1iz0a2          20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS--RPEK-LALPLALGAEEAATYAEVPE   84 (171)
T ss_dssp             HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SGGG-SHHHHHTTCSEEEEGGGHHH
T ss_pred             HHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccc--cccc-cccccccccceeeehhhhhh
Confidence            56668999999999987666555555556778987766643  2333 34456778888876554433

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=86.48  E-value=1.4  Score=34.33  Aligned_cols=50  Identities=8%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCCEEEEEccCC-HHH-HHHHHHHHHHCCeEeeC
Q psy4550          45 LDEWTDIVGTYLINQ--GCIVGSTVGVLMERC-LEW-TISYIAIHKAGGGYLPL   94 (251)
Q Consensus        45 l~~~~~~~a~~L~~~--g~~~g~~V~l~~~~~-~~~-~~~~~a~~~~G~~~v~i   94 (251)
                      |.++.+++|..|.+.  ++++|+.|.|.++.. .++ -.+.-++..+|+.++.+
T Consensus         2 ~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v   55 (406)
T d2ayia1           2 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV   55 (406)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hHHHHHHHHHHHHHHcccCCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEE
Confidence            346788899999875  799999999998854 333 33566788899976644

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=2.5  Score=28.27  Aligned_cols=57  Identities=11%  Similarity=-0.101  Sum_probs=38.9

Q ss_pred             cCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550          59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK  118 (251)
Q Consensus        59 ~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~  118 (251)
                      .++++|++|+|..-.+.--..++..+...|+.++.+..  +++. ...+++.+++.++-.
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH   80 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence            37999999999997554444444455778887766642  3444 456667888888754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.39  E-value=3.2  Score=27.69  Aligned_cols=69  Identities=12%  Similarity=-0.078  Sum_probs=43.0

Q ss_pred             HHhc-CCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc--cchhhhhhc
Q psy4550          56 LINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK--GEYMDRLER  127 (251)
Q Consensus        56 L~~~-g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~  127 (251)
                      |.+. .+++||.|++....+.--..++--+...|+.++.+.  .+++.. ..++..+++.+|-.  ++..+.+.+
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~--~s~~k~-~~~~~lGa~~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV--GTAQKA-QSALKAGAWQVINYREEDLVERLKE   91 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEE--SSHHHH-HHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecc--cchHHH-HHHHhcCCeEEEECCCCCHHHHHHH
Confidence            4444 689999999998888444444444567888777553  244444 44556788877743  334444443

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=84.37  E-value=0.87  Score=35.86  Aligned_cols=82  Identities=16%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHHHHHHHHHHH---HhCCCCCCChhhhhH----HHHHHHHHhhhcCccEEEecCc
Q psy4550         159 GLDDIAYIVYSSGTTGKPKGIVCPHRGAVHAYKWRH---RAYPYDEDDREACNV----FFVWEMLRPLTQGIPMYVISDE  231 (251)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~l~~G~~~v~~~~~  231 (251)
                      .|+.+|++.-..|       ..+|...+...+..++   ...|+.++|++...+    -+...+++++..|+..+..+. 
T Consensus        15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~-   86 (503)
T d3cw9a1          15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNP-   86 (503)
T ss_dssp             STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECT-
T ss_pred             CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCC-
Confidence            4466776554433       3578888776554444   456889999875533    445678999999999999987 


Q ss_pred             cccCchHHHhhhhccccC
Q psy4550         232 VIYDPPRLTSGWVRLPLN  249 (251)
Q Consensus       232 ~~~~~~~~~~~i~~~~vt  249 (251)
                       .+.+..+...+++.++.
T Consensus        87 -~~~~~~i~~~l~~~~~~  103 (503)
T d3cw9a1          87 -RLKSAELAELIKRGEMT  103 (503)
T ss_dssp             -TSCHHHHHHHHHHTTCS
T ss_pred             -CCCHHHHHHHHHhcCCc
Confidence             48899999998887764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.05  E-value=3.2  Score=27.48  Aligned_cols=60  Identities=17%  Similarity=0.109  Sum_probs=39.0

Q ss_pred             HHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550          56 LINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG  119 (251)
Q Consensus        56 L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  119 (251)
                      +++.++++||+|+|+.. +.--..+...+...|+.++.++.  +++. ..+.++.++...+..+
T Consensus        19 ~~~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~--~~~r-~~~a~~~ga~~~~~~~   78 (170)
T d1e3ja2          19 CRRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTAR--SPRR-LEVAKNCGADVTLVVD   78 (170)
T ss_dssp             HHHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES--CHHH-HHHHHHTTCSEEEECC
T ss_pred             HHHhCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccch--HHHH-HHHHHHcCCcEEEecc
Confidence            55668999999999864 54444445555778887776653  3333 3455566776666543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.03  E-value=2.2  Score=28.44  Aligned_cols=62  Identities=18%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550          54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG  119 (251)
Q Consensus        54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  119 (251)
                      +.|++.++++||+|+++..-.+-.....+ +...|+.++.++..-.  .+. ..++.+++.++...
T Consensus        18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~-ak~~G~~vi~~~~~~~--k~~-~a~~lGa~~~i~~~   79 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLI-SKAMGAETYVISRSSR--KRE-DAMKMGADHYIATL   79 (168)
T ss_dssp             HHHHHTTCSTTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSST--THH-HHHHHTCSEEEEGG
T ss_pred             HHHHHhCcCCCCEEEEECCCCcchhHHHH-hhhccccccccccchh--HHH-HhhccCCcEEeecc
Confidence            44667799999999999875455555544 4467888777765333  333 34566777777543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.52  E-value=3.5  Score=27.16  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=40.7

Q ss_pred             HHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEc
Q psy4550          54 TYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK  118 (251)
Q Consensus        54 ~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~  118 (251)
                      +.+++.++++||+|++...-.+-.. +...+...|+.++.++.  +++.+ ...++.+++.++..
T Consensus        18 ~al~~~~~~~g~~VlV~GaG~vG~~-~~~~ak~~G~~Vi~~~~--~~~~~-~~a~~~Ga~~~i~~   78 (166)
T d1llua2          18 KGLKQTNARPGQWVAISGIGGLGHV-AVQYARAMGLHVAAIDI--DDAKL-ELARKLGASLTVNA   78 (166)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHH-HHHHHHHTTCEEEEEES--CHHHH-HHHHHTTCSEEEET
T ss_pred             HHHHHhCCCCCCEEEEeeccccHHH-HHHHHHHcCCccceecc--hhhHH-HhhhccCccccccc
Confidence            3466678999999999887445444 55555667887776643  34444 45567788877753

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=81.20  E-value=4.8  Score=29.36  Aligned_cols=92  Identities=8%  Similarity=-0.110  Sum_probs=60.2

Q ss_pred             CCceEEEecC-CCeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHH
Q psy4550          27 PDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLES  105 (251)
Q Consensus        27 ~~~~a~~~~~-~~~~T~~~l~~~~~~~a~~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~  105 (251)
                      +-++.+.+.. +.+=||+.-  .+..+...+.+.|...+....+....+---..+.++|...|..++.+-|...++....
T Consensus        23 g~~iy~K~E~~~ptGSfK~R--ga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~  100 (292)
T d2bhsa1          23 GSEVWLKLEGNNPAGSVKDR--AALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRA  100 (292)
T ss_dssp             SCEEEEEEGGGSTTSBTHHH--HHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHH
T ss_pred             CCEEEEEeCCCCCCCCcHHH--HHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhH
Confidence            3445565322 223455442  2233333344555433445566667777778888999999998888877777778888


Q ss_pred             HHhhcCccEEEEccc
Q psy4550         106 VLDDAKPSIVITKGE  120 (251)
Q Consensus       106 ~l~~~~~~~vi~~~~  120 (251)
                      .++..+++++++...
T Consensus       101 ~~~~~GA~v~~v~~~  115 (292)
T d2bhsa1         101 AMRAYGAELILVTKE  115 (292)
T ss_dssp             HHHHTTCEEEEECTT
T ss_pred             HHHHhCCCcceeecc
Confidence            899999999988654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.73  E-value=3.4  Score=27.19  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=41.2

Q ss_pred             HHHhcCCCCCCEEEEEccCCHHHHHHHHHHHHHCCeEeeCCCCCCHHHHHHHHhhcCccEEEEcc
Q psy4550          55 YLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG  119 (251)
Q Consensus        55 ~L~~~g~~~g~~V~l~~~~~~~~~~~~~a~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  119 (251)
                      .|+..++++||+|++...-++-... ...+...|+.++.+.  .+++.+ ..++..+++.++...
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a-~~~a~~~g~~v~~~~--~~~~r~-~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVA-VQYAKAMGLNVVAVD--IGDEKL-ELAKELGADLVVNPL   79 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHH-HHHHHHTTCEEEEEC--SCHHHH-HHHHHTTCSEEECTT
T ss_pred             HHHHhCCCCCCEEEEeecccchhhh-hHHHhcCCCeEeccC--CCHHHh-hhhhhcCcceecccc
Confidence            3566789999999999876665554 444556777655553  244444 466778888887643