Psyllid ID: psy4580

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVDLKS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVDLKS
Flexible Loop (DISEMBL)
mkskleererdikdlkillrskqeeigeisvrkdlaesklanairdkdyqeqklkcvtnrinqleevvdlks
Low Complexity Region (SEG)
MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVDLKS
Disordered region (IsUnstruct)
****************************************************KLKCVTNRIN**********
Disordered Region (DISOPRED)
************K*****************VR*********************LKCVTNRINQLEEVVDL**
Disordered Region (DISEMBL)
*********RDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVDLKS
Disordered Region (DISPRO)
MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVDLK*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSKxxxxxxxxxxxxxxxxxxxxxIGEISVRKDLAESKLANAIRDxxxxxxxxxxxxxxxxxxxxxVDLKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
321476484	1281	hypothetical protein DAPPUDRAFT_312250 [	0.75	0.042	0.537	2e-07
242004935	1297	150 kDa dynein-associated polypeptide, p	0.833	0.046	0.45	4e-06
328711717	1337	PREDICTED: dynactin subunit 1-like isofo	0.763	0.041	0.472	5e-05
328711715	1287	PREDICTED: dynactin subunit 1-like isofo	0.763	0.042	0.472	5e-05

>gi|321476484|gb|EFX87445.1| hypothetical protein DAPPUDRAFT_312250 [Daphnia pulex]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 1   MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKL 54
           ++ KLEERE  IKD+ ++LR+KQEE+ E++VRK++AE KL+N  RD D   +KL
Sbjct: 946 LRHKLEERESLIKDMNVMLRNKQEELSEMNVRKEMAEKKLSNLARDNDVASEKL 999

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004935|ref|XP_002423331.1| 150 kDa dynein-associated polypeptide, putative [Pediculus humanus corporis] gi|212506350|gb|EEB10593.1| 150 kDa dynein-associated polypeptide, putative [Pediculus humanus corporis]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 44/60 (73%)

Query: 1    MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNR 60
            +  KLE +E DI++LK+ L++KQEE+ E+ +RKDL E KL+N  +D+D +  KL+ + N+
Sbjct: 962  LSKKLESKEMDIRELKMALKTKQEELSEMCIRKDLVEKKLSNINKDRDSESVKLRVIFNQ 1021

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711717|ref|XP_003244620.1| PREDICTED: dynactin subunit 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 1    MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
            +++ ++ +E DI +LK+ LRSKQEEIGE++VRK+LAE KL+  I + +   +KL+
Sbjct: 994  LRNTIKSKENDILELKMALRSKQEEIGELNVRKELAEKKLSTTIHESEISIEKLQ 1048

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711715|ref|XP_001944940.2| PREDICTED: dynactin subunit 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 1   MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
           +++ ++ +E DI +LK+ LRSKQEEIGE++VRK+LAE KL+  I + +   +KL+
Sbjct: 944 LRNTIKSKENDILELKMALRSKQEEIGELNVRKELAEKKLSTTIHESEISIEKLQ 998

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
ZFIN|ZDB-GENE-050419-28	1114	dctn1b "dynactin 1b" [Danio re	0.847	0.054	0.409	2.3e-05
FB|FBgn0001108	1265	Gl "Glued" [Drosophila melanog	0.763	0.043	0.4	4.3e-05
MGI|MGI:107745	1281	Dctn1 "dynactin 1" [Mus muscul	0.902	0.050	0.382	0.00012
ZFIN|ZDB-GENE-070117-2205	1226	dctn1a "dynactin 1a" [Danio re	0.888	0.052	0.384	0.00014
UNIPROTKB|F1MIC9	1239	DCTN1 "Uncharacterized protein	0.902	0.052	0.382	0.00014
UNIPROTKB|D4A8U7	1239	Dctn1 "Dynactin subunit 1" [Ra	0.902	0.052	0.382	0.00014
UNIPROTKB|Q14203	1278	DCTN1 "Dynactin subunit 1" [Ho	0.902	0.050	0.382	0.00015
RGD|62038	1280	Dctn1 "dynactin 1" [Rattus nor	0.902	0.050	0.382	0.00015
UNIPROTKB|F1SNT8	1286	DCTN1 "Uncharacterized protein	0.902	0.050	0.382	0.00015
UNIPROTKB|P35458	1224	DCTN1 "Dynactin subunit 1" [Ga	0.722	0.042	0.461	0.00018

ZFIN|ZDB-GENE-050419-28 dctn1b "dynactin 1b" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D + +K++ + +  + 
Sbjct:   766 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSASKDADERVEKIQAILDETDS 825

Query:    64 L 64
             L
Sbjct:   826 L 826

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IGI

FB|FBgn0001108 Gl "Glued" [Drosophila melanogaster (taxid:7227)]

 Score = 111 (44.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query:     1 MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
             + + LE RE D+K LK+  + KQ E+ E+ +RKDLAE KL+    + ++   K K
Sbjct:   982 LAATLENREADVKQLKVAAKMKQNELSEMQIRKDLAEKKLSVLQNEYEHAVDKWK 1036

GO:0001709 "cell fate determination" evidence=IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0008090 "retrograde axon cargo transport" evidence=IMP;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005869 "dynactin complex" evidence=ISS;NAS;TAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0048477 "oogenesis" evidence=NAS

GO:0045502 "dynein binding" evidence=TAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=IMP

GO:0051028 "mRNA transport" evidence=IMP

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0051383 "kinetochore organization" evidence=IMP

GO:0051299 "centrosome separation" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0031616 "spindle pole centrosome" evidence=IDA

GO:0005828 "kinetochore microtubule" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

MGI|MGI:107745 Dctn1 "dynactin 1" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+++
Sbjct:   944 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLDE 1000

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:  1001 TQTLLRKK 1008

GO:0000776 "kinetochore" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0031252 "cell leading edge" evidence=IDA

ZFIN|ZDB-GENE-070117-2205 dctn1a "dynactin 1a" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query:     3 SKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKC-VTNRI 61
             +KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL  + +D D + +K++  +   +
Sbjct:   898 NKLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDTSTKDADERVEKIQTKLDEAL 957

Query:    62 NQLEE 66
             N L++
Sbjct:   958 NTLKK 962

GO:0045176 "apical protein localization" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0048663 "neuron fate commitment" evidence=IMP

GO:0010842 "retina layer formation" evidence=IGI;IMP

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IGI

UNIPROTKB|F1MIC9 DCTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 106 (42.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+ +
Sbjct:   907 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLEE 963

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:   964 TQTLLRKK 971

GO:0031252 "cell leading edge" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|D4A8U7 Dctn1 "Dynactin subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+ +
Sbjct:   907 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLEE 963

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:   964 TQTLLRKK 971

GO:0000776 "kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

UNIPROTKB|Q14203 DCTN1 "Dynactin subunit 1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+ +
Sbjct:   944 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLEE 1000

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:  1001 TQALLRKK 1008

GO:0003774 "motor activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0007399 "nervous system development" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000922 "spindle pole" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0007067 "mitosis" evidence=NAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

RGD|62038 Dctn1 "dynactin 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+ +
Sbjct:   943 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLEE 999

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:  1000 TQTLLRKK 1007

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0000922 "spindle pole" evidence=IEA;ISO

GO:0003777 "microtubule motor activity" evidence=TAS

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=TAS

GO:0031252 "cell leading edge" evidence=IEA;ISO

UNIPROTKB|F1SNT8 DCTN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D   ++++ V  R+ +
Sbjct:   949 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD---ERIEKVQTRLEE 1005

Query:    64 LEEVVDLK 71
              + ++  K
Sbjct:  1006 TQALLRKK 1013

GO:0031252 "cell leading edge" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|P35458 DCTN1 "Dynactin subunit 1" [Gallus gallus (taxid:9031)]

 Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query:     4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
             KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D + +K++
Sbjct:   937 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSASKDADDRVEKIQ 988


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.129   0.322    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  10 23  0.39    29
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  435 (46 KB)
  Total size of DFA:  90 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.08u 0.08s 16.16t   Elapsed:  00:00:03
  Total cpu time:  16.09u 0.08s 16.17t   Elapsed:  00:00:03
  Start:  Thu Aug 15 11:00:24 2013   End:  Thu Aug 15 11:00:27 2013

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG0971|consensus	1243		99.43
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.84
PRK11637	428	AmiB activator; Provisional	86.7
PRK11637	428	AmiB activator; Provisional	82.69

>KOG0971|consensus

Probab=99.43  E-value=3.5e-13  Score=115.83  Aligned_cols=61  Identities=41%  Similarity=0.529  Sum_probs=56.6

Q ss_pred             ChhhhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy4580           1 MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRI   61 (72)
Q Consensus         1 ~~~KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~   61 (72)
                      |+.++|+||++|++||+++|+|++|+|||+||++|+||||+++.++.++++.+++.+.+..
T Consensus       953 L~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~ 1013 (1243)
T KOG0971|consen  953 LGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEET 1013 (1243)
T ss_pred             hhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999998764433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.84  E-value=0.34  Score=33.92  Aligned_cols=56  Identities=14%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             hhhhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580           2 KSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV   57 (72)
Q Consensus         2 ~~KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~   57 (72)
                      ..++.+++..|++..+++-.=++|+...++-..++|.|+..+..|+..=+++|=..
T Consensus       129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999998887544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11637 AmiB activator; Provisional

Probab=86.70  E-value=9.2  Score=29.54  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy4580           4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQL   64 (72)
Q Consensus         4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q~   64 (72)
                      +|.+....|.++...++..+.+++++.-.++-++++++.+....+..-+.+.....+++++
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l  108 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDEL  108 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555544444444444444444444444444444444444443333333

>PRK11637 AmiB activator; Provisional

Probab=82.69  E-value=16  Score=28.24  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy4580           4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ   63 (72)
Q Consensus         4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q   63 (72)
                      ++...+.+|.+++..++.-..++....-.+.-++.++.....+-..--.++.....+|.+
T Consensus        55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~  114 (428)
T PRK11637         55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK  114 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544444444444444444444444444443333333333333333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.41

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.92  E-value=1.2  Score=30.97  Aligned_cols=54  Identities=6%  Similarity=0.004  Sum_probs=42.6

Q ss_pred             hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580           4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV   57 (72)
Q Consensus         4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~   57 (72)
                      ++-+++.+|++-.+.+-.=++|+...++...++|.|+..+..++..-+++|=.+
T Consensus        83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r  136 (152)
T 3a7p_A           83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK  136 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555566666679999999999999999999999999988887554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.41  E-value=12  Score=27.88  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             hhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy4580           5 LEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVD   69 (72)
Q Consensus         5 LE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q~~~~~~   69 (72)
                      ...++.+...++.+...+.+++-...-...-+|++++....-..+--+..+...+.+.||++..+
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445555666666666666666666666667777777666666666666666777788877653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00