Psyllid ID: psy4586

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTTGTLPANTPTMTTGQGGRFWVITDIYGPTALS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHccHHHHHHcccHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHcHHccccccccccccccHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHHHHHHHHccHHHHHHHHccHHHHHHHccHHHHHHHHHHcHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILdnplvqgmlndpnsmrnlimsnpqmqdliernpeinhmlnnpELLRQTMEMARNPSMLQELMRTQDRALsnlesipggYSALQRMYRDIQEPMLNaatqqfsrnpyesnssggnpgrvkapfrrskrylgprqcarpssslstpVLMNLLnrkqplwpnaanpqqgqenrdplpnpwnpgsnpssprpgntttgtlpantptmttgqggrfwvitdiygptals
Flexible Loop (DISEMBL)
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRnpyesnssggnpgrvkapfrrskrylgprqcarpssslsTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTTGTLPANtptmttgqggrfWVITDIYGPTALS
Low Complexity Region (SEG)
MNYDVIAYGSVCRDVKIHNLLVFFKSIyldyvlglggldalgmgSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDplpnpwnpgsnpssprpgntttgtlpantptmttgQGGRFWVITDIYGPTALS
Disordered region (IsUnstruct)
**YDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMEL**************LRTILDNPL**********************************************************************************************************************************************************************************************************QGGRFWVITDIYG*****
Disordered Region (DISOPRED)
*********************************************************************LDNPLVQGMLNDPN******************************************************************************************************************************************************************************************************WVITDIYGPT***
Disordered Region (DISEMBL)
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSR**************VKAPFRRSKRY************LSTPVLMNLLNRKQPLWPNAA********RDPLPNPWNP***********TTTGTLPANTPTMTTGQGGRFWVITDIYGPTALS
Disordered Region (DISPRO)
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSS**************************************************************************************ANTPTMTTGQGGRFWVITDIYGPTA**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNYDVIAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTTGTLPANTPTMTTGQGGRFWVITDIYGPTALS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9JJP9	582	Ubiquilin-1 OS=Rattus nor	yes	N/A	0.649	0.328	0.476	9e-52
Q8R317	582	Ubiquilin-1 OS=Mus muscul	yes	N/A	0.574	0.290	0.509	2e-51
Q9UMX0	589	Ubiquilin-1 OS=Homo sapie	yes	N/A	0.551	0.275	0.512	3e-51
Q5R684	589	Ubiquilin-1 OS=Pongo abel	yes	N/A	0.551	0.275	0.512	4e-51
Q9NRR5	601	Ubiquilin-4 OS=Homo sapie	no	N/A	0.571	0.279	0.521	2e-48
Q99NB8	596	Ubiquilin-4 OS=Mus muscul	no	N/A	0.571	0.281	0.516	3e-48
Q9QZM0	638	Ubiquilin-2 OS=Mus muscul	no	N/A	0.513	0.236	0.609	1e-44
Q9UHD9	624	Ubiquilin-2 OS=Homo sapie	no	N/A	0.391	0.184	0.686	2e-42
Q8C5U9	658	Ubiquilin-3 OS=Mus muscul	no	N/A	0.496	0.221	0.523	3e-40
Q9H347	655	Ubiquilin-3 OS=Homo sapie	no	N/A	0.496	0.222	0.482	7e-36

>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1

 Score =  203 bits (517), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 143/239 (59%), Gaps = 48/239 (20%)

Query: 45  SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
           + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 156 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 215

Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
           I+HMLNNP ++RQT+E+ARNP+M+QE+MR Q+R LSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 216 ISHMLNNPNIMRQTLELARNPAMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPML 275

Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
           NAA +QF  NP+ S  S  +      P R                               
Sbjct: 276 NAAQEQFGGNPFASLVSSPSSAEGTQPSRT------------------------------ 305

Query: 225 PLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNT-----TTGTLPANTPTMTTGQG 278
                        ENRDPLPNPW P +  SSP  G+T     T  T   N  +   GQG
Sbjct: 306 -------------ENRDPLPNPWAPQTPQSSPASGSTGSTTNTVSTSAGNATSTPAGQG 351

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.
Rattus norvegicus (taxid: 10116)

>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 136/212 (64%), Gaps = 43/212 (20%)

Query: 45  SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
           + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 156 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 215

Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
           I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 216 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 275

Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
           NAA +QF  NP+ S  S  +      P R                               
Sbjct: 276 NAAQEQFGGNPFASLVSSSSSAEGTQPSRT------------------------------ 305

Query: 225 PLWPNAANPQQGQENRDPLPNPWNPGSNPSSP 256
                        ENRDPLPNPW P ++ SSP
Sbjct: 306 -------------ENRDPLPNPWAPQTSQSSP 324

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Mus musculus (taxid: 10090)

>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 132/205 (64%), Gaps = 43/205 (20%)

Query: 45  SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
           + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 165 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 224

Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
           I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 225 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 284

Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
           +AA +QF  NP+ S  S  + G    P R                               
Sbjct: 285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRT------------------------------ 314

Query: 225 PLWPNAANPQQGQENRDPLPNPWNP 249
                        ENRDPLPNPW P
Sbjct: 315 -------------ENRDPLPNPWAP 326

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Homo sapiens (taxid: 9606)

>sp|Q5R684|UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 132/205 (64%), Gaps = 43/205 (20%)

Query: 45  SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
           + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 165 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 224

Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
           I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 225 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 284

Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
           +AA +QF  NP+ S  S  + G    P R                               
Sbjct: 285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRT------------------------------ 314

Query: 225 PLWPNAANPQQGQENRDPLPNPWNP 249
                        ENRDPLPNPW P
Sbjct: 315 -------------ENRDPLPNPWAP 326

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Pongo abelii (taxid: 9601)

>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 142/213 (66%), Gaps = 45/213 (21%)

Query: 46  ANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEI 105
           ANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPEI
Sbjct: 176 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEI 235

Query: 106 NHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 165
           +HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM +
Sbjct: 236 SHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFS 295

Query: 166 AATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQP 225
           AA +QF  NP+ S+ +G +      P R                                
Sbjct: 296 AAREQFGNNPF-SSLAGNSDSSSSQPLRT------------------------------- 323

Query: 226 LWPNAANPQQGQENRDPLPNPWNPGSNPSSPRP 258
                       ENR+PLPNPW+P S P+S  P
Sbjct: 324 ------------ENREPLPNPWSP-SPPTSQAP 343

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 141/213 (66%), Gaps = 45/213 (21%)

Query: 46  ANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEI 105
           ANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPEI
Sbjct: 171 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEI 230

Query: 106 NHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 165
           +HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLES+PGGY+AL+RMY DIQEPM  
Sbjct: 231 SHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFT 290

Query: 166 AATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQP 225
           AA +QF  NP+ S+ +G +      P R                                
Sbjct: 291 AAREQFGNNPF-SSLAGNSDNSSSQPLRT------------------------------- 318

Query: 226 LWPNAANPQQGQENRDPLPNPWNPGSNPSSPRP 258
                       ENR+PLPNPW+P S P+S  P
Sbjct: 319 ------------ENREPLPNPWSP-SPPTSQAP 338

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Mus musculus (taxid: 10090)

>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 119/151 (78%)

Query: 47  NFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN 106
           NF ELQ +MQ ++L +PEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPEI+
Sbjct: 174 NFTELQNQMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEIS 233

Query: 107 HMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNA 166
           H+LNNP+++RQT+E+ARNP+M+QE+MR QD ALSNLESIPGGY+AL+RMY DIQEPMLNA
Sbjct: 234 HLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNA 293

Query: 167 ATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
           A +QF  NP+ +  S    G    P R   R
Sbjct: 294 AQEQFGGNPFATVGSSSTSGEGTQPSRTENR 324

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation (By similarity). Links CD47 to vimentin-containing intermediate filaments of the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 102/115 (88%)

Query: 62  NPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEM 121
           +PEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPEI+H+LNNP+++RQT+E+
Sbjct: 178 SPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEI 237

Query: 122 ARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPY 176
           ARNP+M+QE+MR QD ALSNLESIPGGY+AL+RMY DIQEPMLNAA +QF  NP+
Sbjct: 238 ARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPF 292

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 31  YVLG-LGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLI 89
           + LG L GL  LG+ S +F +    +  + +  PE++  ++D+P +QG+L++   +R L+
Sbjct: 132 FSLGVLTGLSGLGLTSGSFSDQPGSLMWQHISVPELVAQLVDDPFIQGLLSNTGLVRQLV 191

Query: 90  MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGY 149
           + NP MQ LI++NPEI H+LNNPE++RQTME  RNPSM+QE+MR+QDRALSNLESIPGGY
Sbjct: 192 LDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGY 251

Query: 150 SALQRMYRDIQEPMLNAATQQFSRNPY 176
           + L+ MY DI +PMLNA  +QF  NP+
Sbjct: 252 NVLRTMYTDIMDPMLNAVQEQFGGNPF 278

Mus musculus (taxid: 10090)

>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens GN=UBQLN3 PE=1 SV=2

 Score =  151 bits (381), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 31  YVLGL-GGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLI 89
           + LGL  GL  LG+    F +    +  + +  PE +  ++D+P + G+L++   +R L+
Sbjct: 132 FSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGLLSNTGLVRQLV 191

Query: 90  MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGY 149
           + NP MQ LI+ NPEI H+LNNPE++RQT+E  RNP+M+QE++R+QDR LSNLESIPGGY
Sbjct: 192 LDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRVLSNLESIPGGY 251

Query: 150 SALQRMYRDIQEPMLNAATQQFSRNPY 176
           + L  MY DI +PMLNA  +QF  NP+
Sbjct: 252 NVLCTMYTDIMDPMLNAVQEQFGGNPF 278

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
328704609	546	PREDICTED: ubiquilin-1-like isoform 2 [A	0.625	0.336	0.591	2e-65
328704607	541	PREDICTED: ubiquilin-1-like isoform 1 [A	0.615	0.334	0.574	5e-64
195169947	558	GL18264 [Drosophila persimilis] gi|19411	0.649	0.342	0.544	1e-61
125981123	558	GA12838 [Drosophila pseudoobscura pseudo	0.649	0.342	0.544	2e-61
194893100	552	GG19246 [Drosophila erecta] gi|190649461	0.612	0.326	0.558	4e-61
195479687	552	GE15866 [Drosophila yakuba] gi|194188511	0.690	0.367	0.521	1e-60
20129061	547	ubiquilin [Drosophila melanogaster] gi|7	0.690	0.371	0.525	2e-60
195345799	546	GM22982 [Drosophila sechellia] gi|194134	0.687	0.369	0.525	3e-60
91076160	537	PREDICTED: similar to ubiquilin-1 isofor	0.574	0.314	0.566	4e-60
332020650	518	Ubiquilin-1 [Acromyrmex echinatior]	0.625	0.355	0.561	5e-60

>gi|328704609|ref|XP_003242547.1| PREDICTED: ubiquilin-1-like isoform 2 [Acyrthosiphon pisum]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 161/230 (70%), Gaps = 46/230 (20%)

Query: 34  GLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNP 93
           GL G++ALG  SANFMELQQRMQ E++ NP+MLR ++D+P+VQ M++DP  MR LI++NP
Sbjct: 121 GLPGMEALGFTSANFMELQQRMQRELIDNPDMLRNLVDSPMVQQMMSDPAHMRQLILANP 180

Query: 94  QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
           QMQ L+ER+PEINHMLNNPE+LRQTMEMARNPSMLQELMRTQDRALSNLESIPGG+SALQ
Sbjct: 181 QMQQLVERHPEINHMLNNPEMLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGFSALQ 240

Query: 154 RMYRDIQEPMLNAATQQFSRNPYE--SNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSL 211
           RMYRD+QEP +NAAT++FSRN +   S S GGN            +YL            
Sbjct: 241 RMYRDVQEPFMNAATEEFSRNTFATPSESGGGN-----------NKYL------------ 277

Query: 212 STPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPW--NPGSNPSSPRPG 259
                               NPQQGQENRDPLPNPW  + G+N S P  G
Sbjct: 278 -------------------QNPQQGQENRDPLPNPWGGSTGTNQSDPSNG 308

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704607|ref|XP_001952173.2| PREDICTED: ubiquilin-1-like isoform 1 [Acyrthosiphon pisum]

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 156/228 (68%), Gaps = 47/228 (20%)

Query: 34  GLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNP 93
           GL G++ALG  SANFMELQQRMQ E++ NP+MLR ++D+P+VQ M++DP  MR LI++NP
Sbjct: 121 GLPGMEALGFTSANFMELQQRMQRELIDNPDMLRNLVDSPMVQQMMSDPAHMRQLILANP 180

Query: 94  QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
           QMQ L+ER+PEINHMLNNPE+LRQTMEMARNPSMLQELMRTQDRALSNLESIPGG+SALQ
Sbjct: 181 QMQQLVERHPEINHMLNNPEMLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGFSALQ 240

Query: 154 RMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLST 213
           RMYRD+QEP +NAAT++FSRN + + S  G                              
Sbjct: 241 RMYRDVQEPFMNAATEEFSRNTFATPSESG------------------------------ 270

Query: 214 PVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPW--NPGSNPSSPRPG 259
                             NPQQGQENRDPLPNPW  + G+N S P  G
Sbjct: 271 ---------------GEQNPQQGQENRDPLPNPWGGSTGTNQSDPSNG 303

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195169947|ref|XP_002025775.1| GL18264 [Drosophila persimilis] gi|194110628|gb|EDW32671.1| GL18264 [Drosophila persimilis]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 157/235 (66%), Gaps = 44/235 (18%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNPLVQ M+N+P++MR L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQMMNNPDTMRQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQMQDL++RNPEI HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMQDLMQRNPEITHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG                         
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVEGGGAA---------------------- 259

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTT 263
                                AANPQQG ENR+PLPNPW  GS  ++    N++T
Sbjct: 260 ---------------------AANPQQGTENRNPLPNPWG-GSGTATGNGTNSST 292

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125981123|ref|XP_001354568.1| GA12838 [Drosophila pseudoobscura pseudoobscura] gi|54642878|gb|EAL31622.1| GA12838 [Drosophila pseudoobscura pseudoobscura]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 157/235 (66%), Gaps = 44/235 (18%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNPLVQ M+N+P++MR L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQMMNNPDTMRQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQMQDL++RNPEI HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMQDLMQRNPEITHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG                         
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVEGGGVA---------------------- 259

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTT 263
                                AANPQQG ENR+PLPNPW  GS  ++    N++T
Sbjct: 260 ---------------------AANPQQGTENRNPLPNPWG-GSGTATGNGTNSST 292

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893100|ref|XP_001977812.1| GG19246 [Drosophila erecta] gi|190649461|gb|EDV46739.1| GG19246 [Drosophila erecta]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 150/222 (67%), Gaps = 42/222 (18%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNPLVQ M+N+P++MR L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQMMNNPDTMRQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQMQDL++RNPEI+HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMQDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG  G                      
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGA--------------------- 260

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPG 250
                                  NPQQG ENR+PLPNPW  G
Sbjct: 261 ---------------------GINPQQGTENRNPLPNPWGAG 281

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479687|ref|XP_002100987.1| GE15866 [Drosophila yakuba] gi|194188511|gb|EDX02095.1| GE15866 [Drosophila yakuba]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/255 (52%), Positives = 163/255 (63%), Gaps = 52/255 (20%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNPLVQ M+N+P +M  L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNSDMLRSLMDNPLVQQMMNNPETMSQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQMQDL++RNPEI+HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMQDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG  G                      
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGA--------------------- 260

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPW-NPGSNPSSPRPGNTT----- 262
                                  NPQQG ENR+PLPNPW   G+N ++   G+ +     
Sbjct: 261 ---------------------GINPQQGTENRNPLPNPWGGGGANSATNGTGSGSGAGNR 299

Query: 263 TGTLP----ANTPTM 273
           TG LP     NTP M
Sbjct: 300 TGDLPPNNVLNTPAM 314

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20129061|ref|NP_608344.1| ubiquilin [Drosophila melanogaster] gi|7293631|gb|AAF49003.1| ubiquilin [Drosophila melanogaster] gi|21711699|gb|AAM75040.1| LD38919p [Drosophila melanogaster] gi|220947322|gb|ACL86204.1| Ubqn-PA [synthetic construct] gi|220956792|gb|ACL90939.1| Ubqn-PA [synthetic construct]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 162/253 (64%), Gaps = 50/253 (19%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNP+VQ M+N+P++MR L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQM DL++RNPEI+HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG  G                      
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGA--------------------- 260

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPW---NPGSNPSSPRPG-NTTTG 264
                                  NPQQG ENR+PLPNPW   N G+N +    G    TG
Sbjct: 261 ---------------------GNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTG 299

Query: 265 TLP----ANTPTM 273
            LP     NTP M
Sbjct: 300 DLPPNNVLNTPAM 312

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345799|ref|XP_002039456.1| GM22982 [Drosophila sechellia] gi|194134682|gb|EDW56198.1| GM22982 [Drosophila sechellia]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 161/253 (63%), Gaps = 51/253 (20%)

Query: 29  LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNL 88
           L+   GL G++ALG GS  FM+LQ RMQ E+L N +MLR+++DNP+VQ M+N+P +MR L
Sbjct: 102 LNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPETMRQL 161

Query: 89  IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGG 148
           I SNPQM DL++RNPEI+HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGG
Sbjct: 162 ITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGG 221

Query: 149 YSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPS 208
           YSALQR+YRDIQEPM+NAAT+ F RNP+     GG  G                      
Sbjct: 222 YSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSG---------------------- 259

Query: 209 SSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPW---NPGSNPSSPRPG-NTTTG 264
                                  NPQQG ENR+PLPNPW   N G+N +    G    TG
Sbjct: 260 ---------------------VNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTG 298

Query: 265 TLP----ANTPTM 273
            LP     NTP M
Sbjct: 299 DLPPNNVLNTPAM 311

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076160|ref|XP_966582.1| PREDICTED: similar to ubiquilin-1 isoform 1 [Tribolium castaneum] gi|270014726|gb|EFA11174.1| hypothetical protein TcasGA2_TC004781 [Tribolium castaneum]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 150/224 (66%), Gaps = 55/224 (24%)

Query: 39  DALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDL 98
           D+LG+GS NFME+Q RMQTE+L NP+MLR +LDNP VQ ++NDP +MR LI  NPQMQ+L
Sbjct: 132 DSLGVGSGNFMEIQSRMQTELLNNPDMLRQLLDNPFVQRIMNDPENMRALITRNPQMQEL 191

Query: 99  IERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRD 158
           +ERNPEINHMLNNPELLRQTME+ARNPSMLQELMR+ DRA+SNLESIPGGY+ALQRMYRD
Sbjct: 192 MERNPEINHMLNNPELLRQTMELARNPSMLQELMRSHDRAISNLESIPGGYNALQRMYRD 251

Query: 159 IQEPMLNAATQQFSRNPY----ESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTP 214
           IQEPM +A ++QFSRNP+    ++N SG NP                             
Sbjct: 252 IQEPMFSATSEQFSRNPFAGLVDNNQSGNNP----------------------------- 282

Query: 215 VLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWN---PGSNPSS 255
                              QQG ENR+PLPNPW    P +N SS
Sbjct: 283 -------------------QQGTENREPLPNPWGGQRPNTNNSS 307

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020650|gb|EGI61056.1| Ubiquilin-1 [Acromyrmex echinatior]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/228 (56%), Positives = 155/228 (67%), Gaps = 44/228 (19%)

Query: 39  DALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDL 98
           ++LG+GSANF++LQQRMQ E+L NPE +R +LDNPLVQ ++NDP +MRNL+ +NPQMQ+L
Sbjct: 122 ESLGLGSANFIDLQQRMQRELLSNPETMRQVLDNPLVQSLMNDPENMRNLVTANPQMQEL 181

Query: 99  IERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRD 158
           ++RNPEI+HMLNNPELLRQTME+ARNPSMLQELMR+ DRALSNLESIPGGYSAL+RMYRD
Sbjct: 182 MQRNPEISHMLNNPELLRQTMELARNPSMLQELMRSHDRALSNLESIPGGYSALRRMYRD 241

Query: 159 IQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMN 218
           IQEPML AAT    RNP+ +                                    ++ N
Sbjct: 242 IQEPMLAAATN--GRNPFAA------------------------------------LVEN 263

Query: 219 LLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTTGTL 266
             N+      ++ NPQQGQENRDPLPNPWN   N S     N   G L
Sbjct: 264 SSNQ------DSQNPQQGQENRDPLPNPWNQSQNDSGTVQQNQGRGLL 305

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
FB|FBgn0031057	547	Ubqn "Ubiquilin" [Drosophila m	0.5	0.268	0.680	3.5e-52
UNIPROTKB|H9L0E0	559	UBQLN4 "Uncharacterized protei	0.574	0.302	0.598	1.9e-51
UNIPROTKB|H9L0E1	561	UBQLN4 "Uncharacterized protei	0.574	0.301	0.598	1.9e-51
UNIPROTKB|F1N6D3	612	F1N6D3 "Uncharacterized protei	0.517	0.248	0.647	3.1e-51
UNIPROTKB|Q9NRR5	601	UBQLN4 "Ubiquilin-4" [Homo sap	0.517	0.252	0.647	3.1e-51
UNIPROTKB|F1RLP9	601	UBQLN4 "Uncharacterized protei	0.517	0.252	0.647	3.1e-51
MGI|MGI:2150152	596	Ubqln4 "ubiquilin 4" [Mus musc	0.517	0.255	0.640	5.1e-51
RGD|1308273	595	Ubqln4 "ubiquilin 4" [Rattus n	0.517	0.255	0.640	5.1e-51
MGI|MGI:1860276	582	Ubqln1 "ubiquilin 1" [Mus musc	0.574	0.290	0.594	5.8e-50
UNIPROTKB|Q9UMX0	589	UBQLN1 "Ubiquilin-1" [Homo sap	0.571	0.285	0.591	3.2e-49

FB|FBgn0031057 Ubqn "Ubiquilin" [Drosophila melanogaster (taxid:7227)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 100/147 (68%), Positives = 123/147 (83%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             S  FM+LQ RMQ E+L N +MLR+++DNP+VQ M+N+P++MR LI SNPQM DL++RNPE
Sbjct:   118 SNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQLITSNPQMHDLMQRNPE 177

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNP+LLRQTME+ARNPSMLQELMR+ DRA+SNLES+PGGYSALQR+YRDIQEPM+
Sbjct:   178 ISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMM 237

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAP 191
             NAAT+ F RNP+     GG  G    P
Sbjct:   238 NAATESFGRNPFAGLVDGGGSGAGNNP 264

GO:0042982 "amyloid precursor protein metabolic process" evidence=IMP

GO:0070628 "proteasome binding" evidence=IPI

UNIPROTKB|H9L0E0 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 103/172 (59%), Positives = 132/172 (76%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR +IM+NPQMQ L+ERNPE
Sbjct:   136 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPE 195

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM 
Sbjct:   196 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 255

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR--YLGPRQCARPSSSLSTP 214
             +AA +QF  NP+ S+ +G +      P R   R     P   + P+S    P
Sbjct:   256 SAAREQFGNNPF-SSLTGNSESSSSQPLRTENREPLPNPWSPSPPASQSQAP 306

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|H9L0E1 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 103/172 (59%), Positives = 132/172 (76%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR +IM+NPQMQ L+ERNPE
Sbjct:   138 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPE 197

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM 
Sbjct:   198 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 257

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR--YLGPRQCARPSSSLSTP 214
             +AA +QF  NP+ S+ +G +      P R   R     P   + P+S    P
Sbjct:   258 SAAREQFGNNPF-SSLTGNSESSSSQPLRTENREPLPNPWSPSPPASQSQAP 308

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1N6D3 F1N6D3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 99/153 (64%), Positives = 127/153 (83%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPE
Sbjct:   186 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 245

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM 
Sbjct:   246 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 305

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
             +AA +QF  NP+ S+ +G +      P R   R
Sbjct:   306 SAAREQFGNNPF-SSLAGNSDSSSSQPLRTENR 337

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q9NRR5 UBQLN4 "Ubiquilin-4" [Homo sapiens (taxid:9606)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 99/153 (64%), Positives = 127/153 (83%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPE
Sbjct:   175 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 234

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM 
Sbjct:   235 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 294

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
             +AA +QF  NP+ S+ +G +      P R   R
Sbjct:   295 SAAREQFGNNPF-SSLAGNSDSSSSQPLRTENR 326

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0031597 "cytosolic proteasome complex" evidence=IDA

GO:0031595 "nuclear proteasome complex" evidence=IDA

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

UNIPROTKB|F1RLP9 UBQLN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 99/153 (64%), Positives = 127/153 (83%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPE
Sbjct:   175 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 234

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM 
Sbjct:   235 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 294

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
             +AA +QF  NP+ S+ +G +      P R   R
Sbjct:   295 SAAREQFGNNPF-SSLAGNSDSSSSQPLRTENR 326

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

MGI|MGI:2150152 Ubqln4 "ubiquilin 4" [Mus musculus (taxid:10090)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 98/153 (64%), Positives = 126/153 (82%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPE
Sbjct:   170 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 229

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLES+PGGY+AL+RMY DIQEPM 
Sbjct:   230 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMF 289

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
              AA +QF  NP+ S+ +G +      P R   R
Sbjct:   290 TAAREQFGNNPF-SSLAGNSDNSSSQPLRTENR 321

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1308273 Ubqln4 "ubiquilin 4" [Rattus norvegicus (taxid:10116)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 98/153 (64%), Positives = 126/153 (82%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             SANFMELQQ+MQ +++ NPEML  I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPE
Sbjct:   169 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 228

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLES+PGGY+AL+RMY DIQEPM 
Sbjct:   229 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMF 288

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
              AA +QF  NP+ S+ +G +      P R   R
Sbjct:   289 TAAREQFGNNPF-SSLAGNSDNSSSQPLRTENR 320

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031593 "polyubiquitin binding" evidence=IEA;ISO

GO:0031595 "nuclear proteasome complex" evidence=IEA;ISO

GO:0031597 "cytosolic proteasome complex" evidence=IEA;ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

MGI|MGI:1860276 Ubqln1 "ubiquilin 1" [Mus musculus (taxid:10090)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 101/170 (59%), Positives = 129/170 (75%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct:   156 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 215

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct:   216 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 275

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTP 214
             NAA +QF  NP+ S  S  +      P R   R   P   A P +S S+P
Sbjct:   276 NAAQEQFGGNPFASLVSSSSSAEGTQPSRTENRDPLPNPWA-PQTSQSSP 324

GO:0000502 "proteasome complex" evidence=IEA

GO:0001666 "response to hypoxia" evidence=ISO

GO:0005102 "receptor binding" evidence=NAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0019215 "intermediate filament binding" evidence=NAS

GO:0019900 "kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031396 "regulation of protein ubiquitination" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q9UMX0 UBQLN1 "Ubiquilin-1" [Homo sapiens (taxid:9606)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 100/169 (59%), Positives = 129/169 (76%)

Query:    45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
             + NF ELQ +MQ ++L NPEM+  I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct:   165 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 224

Query:   105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
             I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct:   225 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 284

Query:   165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLST 213
             +AA +QF  NP+ S  S  + G    P R   R   P   A P +S S+
Sbjct:   285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWA-PQTSQSS 332

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IMP;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0031396 "regulation of protein ubiquitination" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UMX0	UBQL1_HUMAN	No assigned EC number	0.5121	0.5510	0.2750	yes	N/A
Q8R317	UBQL1_MOUSE	No assigned EC number	0.5094	0.5748	0.2903	yes	N/A
Q5R684	UBQL1_PONAB	No assigned EC number	0.5121	0.5510	0.2750	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0010|consensus	493		100.0
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.4
KOG0010|consensus	493		96.92
smart00727	41	STI1 Heat shock chaperonin-binding motif.	96.62
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	96.05
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	94.26
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	92.33
KOG0011|consensus	340		88.47
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	85.94

>KOG0010|consensus

Probab=100.00  E-value=2.6e-46  Score=367.86  Aligned_cols=202  Identities=54%  Similarity=0.868  Sum_probs=182.3

Q ss_pred             hcccchhhccccCCCCCCCCCCCCCccccHHHHHHHhhcCCHHHHHhhhCCHHHHhhhcChHHHHHHHhhChHHHHHHhh
Q psy4586          22 VFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIER  101 (294)
Q Consensus        22 ~~~~~~~~g~lggL~GL~~~G~~sg~f~d~~qqM~qQLm~nPe~M~qmMnNP~VQsMLSNP~lmrqMI~sNPqmqqmmeq  101 (294)
                      +.++||.+..+++++|++..|.....|.+.+.+++++++++||++.+||+||+||+||+||++||++|.+||+|+++|++
T Consensus       115 a~~~p~~l~~~~~~~g~~~~~~~~~~F~~l~~~~q~~~~snpe~~~~~m~nP~vq~ll~Npd~mrq~I~anPqmq~lm~~  194 (493)
T KOG0010|consen  115 ASSNPFSLLTVGGFAGLSSLGLFAAMFGELQSQMQNQLLSNPEALRQMMENPIVQSLLNNPDLMRQLIMANPQMQDLMQR  194 (493)
T ss_pred             ccCCcccccccccccccccCCcchhhcccccccchhccccCHHHHHHhhhChHHHHHhcChHHHHHHHhcCHHHHHHHhh
Confidence            45577776778889999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHHHHHccccCCCCCchhHhHhhhccchhhHhhhccCCCCCcccccC
Q psy4586         102 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSS  181 (294)
Q Consensus       102 NPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDrALsnLEsiPGG~NaL~rmy~DiqePMlnA~~~~~ggNPFaaL~~  181 (294)
                      |||++|+++||+++||++|++|||+++|||||++|++++++|+||||||+|+|||+||||||+||++++||+|||+++.+
T Consensus       195 npei~h~ln~p~i~rQtle~arNP~m~qemmrn~d~a~SnlesiPgG~n~l~~my~diqdPm~Na~~~~~g~Npfasl~~  274 (493)
T KOG0010|consen  195 NPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQDRAMSNLESIPGGYNALRRMYTDIQDPMLNAASEQFGGNPFASLPG  274 (493)
T ss_pred             CCcchhhhcChHHHHHHHHhccCHHHHHHHHhhccccccChhcCccHHHHHHHHhhhccchhhhhcccccCCCCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCccCcccccccccCCCccCCCCCCCchhHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4586         182 GGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNT  261 (294)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pnpw~~~~~~~~~~~~~~  261 (294)
                      ++..+.                                           ...... ||++|+||||+....++++....+
T Consensus       275 ~~~s~~-------------------------------------------~~~~~~-eN~~plPn~~~~~~~~s~~a~~~~  310 (493)
T KOG0010|consen  275 NQGSGT-------------------------------------------GGSPSP-ENNSPLPNPWAQASTTSSPAANPT  310 (493)
T ss_pred             ccccCC-------------------------------------------CCCCCc-ccCCCCCCcccCCCCCCCCCCCCC
Confidence            887653                                           222233 999999999998887776665555


Q ss_pred             ccCCCC
Q psy4586         262 TTGTLP  267 (294)
Q Consensus       262 ~~~~~~  267 (294)
                      ..+...
T Consensus       311 ~~t~G~  316 (493)
T KOG0010|consen  311 PGTSGG  316 (493)
T ss_pred             cCccCc
Confidence            444443

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.40  E-value=0.00018  Score=48.94  Aligned_cols=31  Identities=35%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             hhhCCHHHHhhhc----ChHHHHHHHhhChHHHHH
Q psy4586          68 TILDNPLVQGMLN----DPNSMRNLIMSNPQMQDL   98 (294)
Q Consensus        68 qmMnNP~VQsMLS----NP~lmrqMI~sNPqmqqm   98 (294)
                      ++++||.++++++    ||++++.++.+||++++.
T Consensus         6 ~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~   40 (41)
T smart00727        6 LRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL   40 (41)
T ss_pred             HHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence            4666777777655    888888887767777653

>KOG0010|consensus

Probab=96.92  E-value=0.0061  Score=62.11  Aligned_cols=15  Identities=33%  Similarity=0.361  Sum_probs=9.4

Q ss_pred             CCCCCCCCCCCCCCC
Q psy4586         241 DPLPNPWNPGSNPSS  255 (294)
Q Consensus       241 ~~~pnpw~~~~~~~~  255 (294)
                      .+..|+|....+.++
T Consensus       304 ~~a~~~~~~t~G~~s  318 (493)
T KOG0010|consen  304 SPAANPTPGTSGGTS  318 (493)
T ss_pred             CCCCCCCcCccCccc
Confidence            467788866655443

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=96.62  E-value=0.0021  Score=43.63  Aligned_cols=17  Identities=47%  Similarity=0.901  Sum_probs=8.7

Q ss_pred             ChHHHHHHHHHhhCHHHHH
Q psy4586         111 NPELLRQTMEMARNPSMLQ  129 (294)
Q Consensus       111 NPE~LRQmmemmrNPa~mQ  129 (294)
                      ||++++++++.  ||+.++
T Consensus        23 nP~~~~~~~~~--nP~~~~   39 (41)
T smart00727       23 NPDMLAQMLQE--NPQLLQ   39 (41)
T ss_pred             CHHHHHHHHHh--CHHhHh
Confidence            66655554433  555443

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=96.05  E-value=0.0042  Score=46.68  Aligned_cols=43  Identities=37%  Similarity=0.612  Sum_probs=24.1

Q ss_pred             hhCCHHHHhh----hcChHHHHHH----HhhChHHHHHHhhChh-hhhccCC
Q psy4586          69 ILDNPLVQGM----LNDPNSMRNL----IMSNPQMQDLIERNPE-INHMLNN  111 (294)
Q Consensus        69 mMnNP~VQsM----LSNP~lmrqM----I~sNPqmqqmmeqNPE-lrqMLnN  111 (294)
                      +.++|.++.|    -+||+++..+    -.+||++.++|++||+ |-++|+.
T Consensus         4 Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~   55 (59)
T PF09280_consen    4 LRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNPEEFLRLLNE   55 (59)
T ss_dssp             GTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCHHHHHHHHcC
Confidence            4556666553    3777544433    3667777777777753 4444443

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=94.26  E-value=0.057  Score=53.43  Aligned_cols=45  Identities=29%  Similarity=0.571  Sum_probs=25.1

Q ss_pred             hhhCCHHHHhh----hcChHHHHHHH----hhChHHHHHHhhCh-hhhhccCCh
Q psy4586          68 TILDNPLVQGM----LNDPNSMRNLI----MSNPQMQDLIERNP-EINHMLNNP  112 (294)
Q Consensus        68 qmMnNP~VQsM----LSNP~lmrqMI----~sNPqmqqmmeqNP-ElrqMLnNP  112 (294)
                      -+.++|.|++|    -+||+++..||    ..||++.++|.+|| +|.+||+.+
T Consensus       250 ~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~  303 (378)
T TIGR00601       250 FLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPEQFLQMLNEP  303 (378)
T ss_pred             HhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHhcCc
Confidence            34456666553    26776665554    45666666666664 355555544

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=92.33  E-value=0.49  Score=35.62  Aligned_cols=45  Identities=31%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             hhhcChHHHHHHHhhChHHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhH
Q psy4586          77 GMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQD  136 (294)
Q Consensus        77 sMLSNP~lmrqMI~sNPqmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QD  136 (294)
                      .|.++|+|        -+||+++++||++.     +.+++++  ..+||+.++.+-++++
T Consensus         3 ~Lr~~Pqf--------~~lR~~vq~NP~lL-----~~lLqql--~~~nP~l~q~I~~n~e   47 (59)
T PF09280_consen    3 FLRNNPQF--------QQLRQLVQQNPQLL-----PPLLQQL--GQSNPQLLQLIQQNPE   47 (59)
T ss_dssp             GGTTSHHH--------HHHHHHHHC-GGGH-----HHHHHHH--HCCSHHHHHHHHHTHH
T ss_pred             HHHcChHH--------HHHHHHHHHCHHHH-----HHHHHHH--hccCHHHHHHHHHCHH
Confidence            45667765        23344444444444     3333333  2445555555544444

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>KOG0011|consensus

Probab=88.47  E-value=0.55  Score=46.29  Aligned_cols=7  Identities=14%  Similarity=0.605  Sum_probs=3.2

Q ss_pred             cChHHHH
Q psy4586          80 NDPNSMR   86 (294)
Q Consensus        80 SNP~lmr   86 (294)
                      .||+++.
T Consensus       234 qNP~ll~  240 (340)
T KOG0011|consen  234 QNPELLH  240 (340)
T ss_pred             hCHHHHH
Confidence            4454443

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=85.94  E-value=1.7  Score=43.20  Aligned_cols=18  Identities=28%  Similarity=0.580  Sum_probs=13.0

Q ss_pred             hhCHHHHHHHHHHhHHHH
Q psy4586         122 ARNPSMLQELMRTQDRAL  139 (294)
Q Consensus       122 mrNPa~mQEMMR~QDrAL  139 (294)
                      .+||+++|.+.++++.-|
T Consensus       280 ~~nP~l~q~I~~n~e~Fl  297 (378)
T TIGR00601       280 QENPQLLQQISQHPEQFL  297 (378)
T ss_pred             hhCHHHHHHHHHCHHHHH
Confidence            567888888777777544

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 56/216 (25%)

Query: 63  PEMLRTILDNPLVQGMLNDPNS---MRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTM 119
            +M ++IL    +  ++   ++      L          +    E        E++++ +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLF-------WTLLSKQE--------EMVQKFV 83

Query: 120 E--MARNPSMLQELMRTQDRALSNLESIPGGY-SALQRMYRDIQ----------EPM--L 164
           E  +  N   L   ++T+ R  S +  +   Y     R+Y D Q          +P   L
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 165 NAATQQFSRNPYES-NSSGG-----------NPGRVKAPFRRSKRYLGPRQCARPSSSLS 212
             A  +         +   G              +V+        +L  + C  P + L 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 213 TPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWN 248
             +L  LL +  P      N     ++   +    +
Sbjct: 201 --MLQKLLYQIDP------NWTSRSDHSSNIKLRIH 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	96.96
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	96.84
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	96.74
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	96.41
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	95.99
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	95.86
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	95.75
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	95.32
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	93.86
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	91.85
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	91.58
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	89.47
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	87.6

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=96.84  E-value=0.0013  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             HHHHHhhhCCHHHHhhhcChHHHHHH
Q psy4586          63 PEMLRTILDNPLVQGMLNDPNSMRNL   88 (294)
Q Consensus        63 Pe~M~qmMnNP~VQsMLSNP~lmrqM   88 (294)
                      +|.++.+++||.++.+|+||++++-+
T Consensus         2 ~e~~~kl~~dPe~~~~m~dP~~~~~l   27 (62)
T 2lnm_A            2 EEVISKIMENPDVAMAFQNPRVQAAL   27 (62)
T ss_dssp             HHHHHHHTTSHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHcChHHHHHcCCHHHHHHH
Confidence            45667788888888888888886543

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0012  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=18.3

Q ss_pred             HHHHHhhhCCHHHHhhhcChHHHHH
Q psy4586          63 PEMLRTILDNPLVQGMLNDPNSMRN   87 (294)
Q Consensus        63 Pe~M~qmMnNP~VQsMLSNP~lmrq   87 (294)
                      +|.+..+|+||.|+.+|+||+++.-
T Consensus        10 ee~~~~~m~dPEi~~im~DP~~~~~   34 (71)
T 2llw_A           10 EETYQRAMKDPEVAAIMQDPVMQSI   34 (71)
T ss_dssp             HHHHHHHHHSHHHHHHHTCTHHHHH
T ss_pred             HHHHHHHhcCHHHHHHhCCHHHHHH
Confidence            4566778888888888888866543

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=96.41  E-value=0.0016  Score=47.61  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=25.5

Q ss_pred             HHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHh
Q psy4586          97 DLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQ  135 (294)
Q Consensus        97 qmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~Q  135 (294)
                      +-+.++|++..+|+||+++..+.++.+||+.+++.+...
T Consensus         6 ~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP   44 (62)
T 2lnm_A            6 SKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDK   44 (62)
T ss_dssp             HHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCH
T ss_pred             HHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhCh
Confidence            334456677777777777777777777777776665433

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=95.99  E-value=0.005  Score=45.68  Aligned_cols=42  Identities=31%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             hhCCHHHHhh----hcChHHHHHHH----hhChHHHHHHhhChh-hhhccC
Q psy4586          69 ILDNPLVQGM----LNDPNSMRNLI----MSNPQMQDLIERNPE-INHMLN  110 (294)
Q Consensus        69 mMnNP~VQsM----LSNP~lmrqMI----~sNPqmqqmmeqNPE-lrqMLn  110 (294)
                      +.++|.|+.|    -+||+++..++    .+||++.++|.+||+ |-+|++
T Consensus         7 Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~   57 (61)
T 2f4m_B            7 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN   57 (61)
T ss_dssp             GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHT
T ss_pred             HHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHc
Confidence            3445555443    26666665554    556666666666654 455544

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=95.86  E-value=0.0029  Score=48.42  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=11.9

Q ss_pred             cChHHHHHHH----hhChHHHHHHhhCh
Q psy4586          80 NDPNSMRNLI----MSNPQMQDLIERNP  103 (294)
Q Consensus        80 SNP~lmrqMI----~sNPqmqqmmeqNP  103 (294)
                      +||+++..+|    .+||++.++|.+||
T Consensus        24 qNP~lL~~lLqqL~~~NPqL~q~I~~n~   51 (72)
T 1pve_A           24 QNPSLLPALLQQIGRENPQLLQQISQHQ   51 (72)
T ss_dssp             TCGGGHHHHHHHHHTTCHHHHHHHHTTH
T ss_pred             HCHHHHHHHHHHHHhHCHHHHHHHHHCH
Confidence            5555554443    34555555554444

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.002  Score=48.36  Aligned_cols=49  Identities=27%  Similarity=0.624  Sum_probs=32.0

Q ss_pred             CCHHHHHhhhCCHHHHhhhcChHHHHHHHhhChHHHHHHhhChh-hhh-ccCChHHHHH
Q psy4586          61 RNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE-INH-MLNNPELLRQ  117 (294)
Q Consensus        61 ~nPe~M~qmMnNP~VQsMLSNP~lmrqMI~sNPqmqqmmeqNPE-lrq-MLnNPE~LRQ  117 (294)
                      ++|+.+..+.+||.++.+|+||++++-+-        -+.+||. +.. .++||.++.-
T Consensus        11 ~~p~~~~kl~~dP~t~~~~~DP~~~~~lq--------~i~~NP~~i~~~~~~dPrv~~~   61 (71)
T 2llv_A           11 ADPNLIENLKKNPKTSEMMKDPQLVAKLI--------GYKQNPQAIGQDLFTDPRLMTI   61 (71)
T ss_dssp             HSSSCHHHHHHSSTTHHHHHSCTHHHHHH--------HHHHSCTTHHHHTTTCHHHHHH
T ss_pred             cChHHHHHHHcChHHHHHhcCHHHHHHHH--------HHHHCHHHHHHHHhhCcHHHHH
Confidence            46777778888888888888888865441        1334443 445 6777775543

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.019  Score=43.47  Aligned_cols=30  Identities=30%  Similarity=0.564  Sum_probs=12.9

Q ss_pred             hhhhhccCChHHHHHHHHHhhCHHHHHHHH
Q psy4586         103 PEINHMLNNPELLRQTMEMARNPSMLQELM  132 (294)
Q Consensus       103 PElrqMLnNPE~LRQmmemmrNPa~mQEMM  132 (294)
                      ||+..+|+||+++.-+.++++||+.+++.+
T Consensus        20 PEi~~im~DP~~~~~lq~~~~NP~~~~k~~   49 (71)
T 2llw_A           20 PEVAAIMQDPVMQSILQQAQQNPAALQEHM   49 (71)
T ss_dssp             HHHHHHHTCTHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHCHHHHHHHH
Confidence            444444444444443333444444444444

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.0068  Score=45.42  Aligned_cols=42  Identities=21%  Similarity=0.622  Sum_probs=31.8

Q ss_pred             ChHHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHH-HHH
Q psy4586          92 NPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQE-LMR  133 (294)
Q Consensus        92 NPqmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQE-MMR  133 (294)
                      .|.+.+.+..||+++.+|+|||++..+-++.+||+.+++ .++
T Consensus        12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~   54 (71)
T 2llv_A           12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFT   54 (71)
T ss_dssp             SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTT
T ss_pred             ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhh
Confidence            455545566778888888888888888888888888877 654

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=91.85  E-value=0.5  Score=34.86  Aligned_cols=47  Identities=34%  Similarity=0.602  Sum_probs=23.9

Q ss_pred             HhhhcChHHHHHHHhhChHHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHH
Q psy4586          76 QGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDR  137 (294)
Q Consensus        76 QsMLSNP~lmrqMI~sNPqmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDr  137 (294)
                      ..|.+||+|        -+||+++++||++.     +.+|.++  -.+||+..+.+.++++.
T Consensus         5 ~~Lr~~Pqf--------~~lR~~vq~NP~~L-----~~lLqql--~~~nP~l~~~I~~n~e~   51 (61)
T 2f4m_B            5 EFLRNQPQF--------QQMRQIIQQNPSLL-----PALLQQI--GRENPQLLQQISQHQEH   51 (61)
T ss_dssp             GGGTTCHHH--------HHHHHHHHHCGGGH-----HHHHHHH--HHHCHHHHHHHHHSHHH
T ss_pred             HHHHcChHH--------HHHHHHHHHCHHHH-----HHHHHHH--HhHCHHHHHHHHHCHHH
Confidence            345566654        22455555555554     3334432  24566666666665553

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=91.58  E-value=0.058  Score=51.59  Aligned_cols=30  Identities=33%  Similarity=0.633  Sum_probs=18.7

Q ss_pred             ChHHHHHHHHH--hhCHHHHHHHHHHhHHHHH
Q psy4586         111 NPELLRQTMEM--ARNPSMLQELMRTQDRALS  140 (294)
Q Consensus       111 NPE~LRQmmem--mrNPa~mQEMMR~QDrALs  140 (294)
                      ||++|..+++.  ..||+++|.+.++++.-|.
T Consensus       256 nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~  287 (368)
T 1oqy_A          256 NPALLPALLQQLGQENPQLLQQISRHQEQFIQ  287 (368)
T ss_dssp             CTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHH
Confidence            55555555553  3577777777777775443

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=89.47  E-value=0.48  Score=36.13  Aligned_cols=37  Identities=38%  Similarity=0.700  Sum_probs=18.8

Q ss_pred             HHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHH
Q psy4586          94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDR  137 (294)
Q Consensus        94 qmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDr  137 (294)
                      +||+++++||++.     +.+|.++  -.+||+.++.+.++++.
T Consensus        17 qlR~~vqqNP~lL-----~~lLqqL--~~~NPqL~q~I~~n~e~   53 (72)
T 1pve_A           17 QMRQIIQQNPSLL-----PALLQQI--GRENPQLLQQISQHQEH   53 (72)
T ss_dssp             THHHHHTTCGGGH-----HHHHHHH--HTTCHHHHHHHHTTHHH
T ss_pred             HHHHHHHHCHHHH-----HHHHHHH--HhHCHHHHHHHHHCHHH
Confidence            3455555555544     3333332  24566666666555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	96.02
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	91.1

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0021  Score=45.71  Aligned_cols=44  Identities=30%  Similarity=0.545  Sum_probs=27.4

Q ss_pred             hhCCHHHHhh----hcChHHHHHHH----hhChHHHHHHhhCh-hhhhccCCh
Q psy4586          69 ILDNPLVQGM----LNDPNSMRNLI----MSNPQMQDLIERNP-EINHMLNNP  112 (294)
Q Consensus        69 mMnNP~VQsM----LSNP~lmrqMI----~sNPqmqqmmeqNP-ElrqMLnNP  112 (294)
                      +.++|.|+.|    -+||+++..++    .+||++-++|.+|+ +|-+||+-|
T Consensus         5 Lr~~PqFq~lR~~vq~nP~~L~~lLqql~~~NP~L~q~I~~nqe~Fl~llnep   57 (58)
T d2f4mb1           5 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP   57 (58)
T ss_dssp             GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSC
T ss_pred             HhcChHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCC
Confidence            3456666553    27776665554    66777777777774 456666544

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.29  Score=34.33  Aligned_cols=35  Identities=34%  Similarity=0.674  Sum_probs=17.5

Q ss_pred             HHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHH
Q psy4586          96 QDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDR  137 (294)
Q Consensus        96 qqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDr  137 (294)
                      |+++++||++.     +.+|+++  -.+||+.++.+-++++.
T Consensus        15 R~~vq~nP~~L-----~~lLqql--~~~NP~L~q~I~~nqe~   49 (58)
T d2f4mb1          15 RQIIQQNPSLL-----PALLQQI--GRENPQLLQQISQHQEH   49 (58)
T ss_dssp             HHHHHHCGGGH-----HHHHHHH--HHHCHHHHHHHHHSHHH
T ss_pred             HHHHHHCHHHH-----HHHHHHH--HhhCHHHHHHHHHCHHH
Confidence            44444444444     3334433  24566666666666553