Psyllid ID: psy4592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MGVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Secondary Structure (PSIPRED)
cccEEEEEEccEEEcccccccccccEEEEcccEEEEcccccHHHHHcccccccccccccEEEEEccccHHHHHHHHcccccEEEEEEEccHHHHHHHHHHccccccccccccEEEEEcHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHcccccEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEcccccHcccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHcccccccEEEEEEccHHHHHHHHHHcHHHHcccccccEEEEEcccHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHEEEEEEEEEEcccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgvslslqveepfypsssnrkeFGTALILDGiiqctefdefsysemiaflplcshpnpkkvlivgggdggvAREVlkhpsvesayLVEIDNRVIEVSKkylpgmavglsdprltvhvgdgfrfmSEHQQEFDVIitdssdpvgpaeslFQASYFELMSRalrpggivcsqagtlwySLDCVGNTLQHCASVFPRLHC
Flexible Loop (DISEMBL)
mgvslslqveepfypsssnrKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKhpsvesaylveIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Low Complexity Region (SEG)
MGVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Disordered region (IsUnstruct)
**********************FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS***VGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP****
Disordered Region (DISOPRED)
*GVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Disordered Region (DISEMBL)
MGVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Disordered Region (DISPRO)
*GVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q64674	302	Spermidine synthase OS=Mu	yes	N/A	0.974	0.635	0.61	6e-65
P19623	302	Spermidine synthase OS=Ho	yes	N/A	0.974	0.635	0.6	7e-65
Q09741	298	Spermidine synthase OS=Sc	yes	N/A	0.984	0.651	0.529	2e-58
Q12074	293	Spermidine synthase OS=Sa	yes	N/A	0.974	0.655	0.505	1e-56
Q9Y8H7	291	Spermidine synthase OS=Ne	N/A	N/A	0.974	0.659	0.51	5e-55
Q9ZTR1	334	Spermidine synthase 1 OS=	N/A	N/A	0.969	0.571	0.485	5e-52
Q9ZTR0	342	Spermidine synthase 2 OS=	N/A	N/A	0.969	0.558	0.465	9e-52
Q96556	308	Spermidine synthase 1 OS=	N/A	N/A	0.969	0.620	0.48	4e-51
Q9ZUB3	334	Spermidine synthase 1 OS=	no	N/A	0.969	0.571	0.46	6e-51
O48661	340	Spermidine synthase 2 OS=	no	N/A	0.969	0.561	0.47	9e-51

>sp|Q64674|SPEE_MOUSE Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1

 Score =  246 bits (629), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/200 (61%), Positives = 144/200 (72%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 30  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VIEVSKK+LPGMAVG S  +L
Sbjct: 90  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVGFSSSKL 149

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  GI+C Q   
Sbjct: 150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGEC 209

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +      C S+FP
Sbjct: 210 QWLHLDLIKEMRHFCKSLFP 229

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6

>sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1

 Score =  246 bits (628), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 30  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct: 90  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 149

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct: 150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 209

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C S+FP
Sbjct: 210 QWLHLDLIKEMRQFCQSLFP 229

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.07c PE=3 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 142/202 (70%), Gaps = 8/202 (3%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +++L+V++  Y   S  ++        +G  L+LDG IQ TE DEFSY EMIA L L 
Sbjct: 25  GQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALN 84

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPKKVL++GGGDGGV REV+KH  VE A L +ID  VI+VSK+YLP M+ G + P++
Sbjct: 85  SHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLPEMSAGFNHPKV 144

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            VH+GDGF+F+ ++Q  FDVIITDSSDP GPAE+LFQ  YF+L+S ALR GG++ +QA  
Sbjct: 145 KVHIGDGFKFLQDYQNTFDVIITDSSDPDGPAEALFQKPYFQLLSDALRGGGVITTQAEC 204

Query: 174 LWYSLDCVGNTLQHCASVFPRL 195
           +W  L  + N L    +VFP +
Sbjct: 205 MWIHLGVISNVLTAVKTVFPNV 226

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q12074|SPEE_YEAST Spermidine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE3 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/200 (50%), Positives = 140/200 (70%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +++L+VE+  +   S  ++        +G  L+LD +IQ TE DEF+Y EMIA L L 
Sbjct: 25  GQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALN 84

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPKKVL++GGGDGGV REV+KH SVE A+L +ID  VI +SK+YLP MA   S P++
Sbjct: 85  SHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCDIDEAVIRLSKEYLPEMAASYSHPKV 144

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             H+GDGF+F+ ++Q  FDVIITDSSDP GPAE+LFQ  YF+L++ AL   G++ +QA +
Sbjct: 145 KTHIGDGFQFLRDYQNTFDVIITDSSDPEGPAETLFQKEYFQLLNSALTEKGVITTQAES 204

Query: 174 LWYSLDCVGNTLQHCASVFP 193
           +W  L  + +  + C+ VFP
Sbjct: 205 MWIHLPIIKDLKKACSEVFP 224

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3 PE=3 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 133/200 (66%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +++L+VE+  +   S           + G  L+LD +IQCTE DEFSY EMI  L + 
Sbjct: 23  GQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMN 82

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPKKVL++GGGDGGV REV+KH  VE A L +ID  VI +SK++LP M+ G   P++
Sbjct: 83  SHPNPKKVLVIGGGDGGVLREVVKHDCVEEAILCDIDEAVIRLSKQFLPHMSAGFEHPKV 142

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            VHVGDGF+F+ + +  FDVIITDSSDP GPAESLFQ  YF+L+  ALR GG++ +QA  
Sbjct: 143 KVHVGDGFKFLEDFKNTFDVIITDSSDPEGPAESLFQKPYFQLLHDALREGGVITTQAEN 202

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  L  +    + C  VFP
Sbjct: 203 QWLHLPLITKLKKDCKEVFP 222

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1

 Score =  203 bits (517), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 139/200 (69%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ ++        +G  LILDG+IQ TE DE +Y EMI  LPLC
Sbjct: 56  GEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLC 115

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H SVE   + EID  V++VSK+Y P +AVG +DPR+
Sbjct: 116 SIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEYFPDIAVGFADPRV 175

Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
           T+++GDG  F+    +  +D +I DSSDP+GPA+ LF+  +FE ++RALRPGG+VC+QA 
Sbjct: 176 TLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAE 235

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           ++W  +  + + + +C  VF
Sbjct: 236 SIWLHMHIIEDIVVNCRQVF 255

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1

 Score =  202 bits (515), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 139/200 (69%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++E+  +   S  ++        +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 64  GEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLC 123

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H S+E   + EIDN V+EVSK++ P +AVG +DPR+
Sbjct: 124 SIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRV 183

Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
           T+ +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +F+ ++RALRPGG++C+QA 
Sbjct: 184 TLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAE 243

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           ++W  +D + + + +C  +F
Sbjct: 244 SIWLHMDIIEDIVSNCRHIF 263

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q96556|SPD1_DATST Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 136/200 (68%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ +         +G  LILDG+IQ TE DE +Y EMI  LPLC
Sbjct: 29  GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLC 88

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H SVE   + EID  VI+VSK++ P +A+G  DPR+
Sbjct: 89  SIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQFFPNVAIGYEDPRV 148

Query: 114 TVHVGDGFRFMS-EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            +HVGDG  F+    +  +D +I DSSDP+GPA+ LF+  +FE ++RALRPGG+VC+QA 
Sbjct: 149 KLHVGDGVAFLKFVAEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAE 208

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           ++W  +  + + + +C  +F
Sbjct: 209 SIWLHMHIIEDIVANCRQIF 228

Datura stramonium (taxid: 4076)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1

 Score =  200 bits (508), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 137/200 (68%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ ++        +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 57  GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 116

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H S+E   + EID  V++VSK++ P +A+G  DPR+
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV 176

Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +F+ ++RALRPGG+VC+QA 
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           +LW  +D + + + +C  +F
Sbjct: 237 SLWLHMDIIEDIVSNCREIF 256

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|O48661|SPD2_ARATH Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2

 Score =  199 bits (506), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 136/200 (68%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ ++        +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 61  GEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 120

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S  NPKKVL++GGGDGGV REV +H SVE   + EID  V++V+K+Y P +AVG  DPR+
Sbjct: 121 SISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPRV 180

Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +FE ++RALRPGG+VC+QA 
Sbjct: 181 NLIIGDGVAFLKNAAEGTYDAVIVDSSDPIGPAKELFEKPFFESVNRALRPGGVVCTQAE 240

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           +LW  +D + + + +C  +F
Sbjct: 241 SLWLHMDIIEDIVSNCRDIF 260

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
156538693	288	PREDICTED: spermidine synthase-like isof	0.984	0.673	0.643	1e-71
383857837	293	PREDICTED: spermidine synthase-like [Meg	0.974	0.655	0.68	8e-71
380021423	293	PREDICTED: spermidine synthase-like [Api	0.974	0.655	0.67	4e-70
340723867	294	PREDICTED: spermidine synthase-like [Bom	0.974	0.653	0.665	2e-69
110762382	293	PREDICTED: spermidine synthase [Apis mel	0.974	0.655	0.665	2e-69
350422672	294	PREDICTED: spermidine synthase-like [Bom	0.969	0.649	0.663	2e-68
242246955	295	spermidine synthase-like [Acyrthosiphon	0.979	0.654	0.616	6e-67
147902014	290	spermidine synthase [Xenopus laevis] gi|	0.974	0.662	0.625	1e-66
328698378	293	PREDICTED: spermidine synthase-like [Acy	0.979	0.658	0.616	3e-66
301620173	300	PREDICTED: spermidine synthase-like [Xen	0.974	0.64	0.62	2e-65

>gi|156538693|ref|XP_001607780.1| PREDICTED: spermidine synthase-like isoform 1 [Nasonia vitripennis] gi|345491872|ref|XP_003426726.1| PREDICTED: spermidine synthase-like isoform 2 [Nasonia vitripennis] gi|345491874|ref|XP_003426727.1| PREDICTED: spermidine synthase-like isoform 3 [Nasonia vitripennis]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 155/202 (76%), Gaps = 8/202 (3%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G++ SL+VE+  Y   S          K +G AL+LDGIIQCTE DEFSY EMI+FLPLC
Sbjct: 18  GIAQSLEVEKILYEGQSEYQHVLVLQTKSYGKALVLDGIIQCTEKDEFSYQEMISFLPLC 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVAREV K P VE  Y VEIDN+V+EVSK++LP MA G SDP++
Sbjct: 78  SHPNPKTVLIVGGGDGGVAREVAKFPGVEKIYQVEIDNKVVEVSKQFLPFMAKGFSDPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +H+GDGF FM +H  EFDVIITDSSDPVGPA SLFQ  YF L+ +AL+P GIVC QAGT
Sbjct: 138 NLHIGDGFEFMKQHSNEFDVIITDSSDPVGPAISLFQEPYFALLKKALKPNGIVCCQAGT 197

Query: 174 LWYSLDCVGNTLQHCASVFPRL 195
           +W +LD V +TL HC S+FP++
Sbjct: 198 VWSNLDQVQDTLTHCRSIFPKV 219

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857837|ref|XP_003704410.1| PREDICTED: spermidine synthase-like [Megachile rotundata]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 150/200 (75%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           GVSLSL+V    +   S          K  G ALILDGIIQ TE DEFSY EMIAFLPLC
Sbjct: 18  GVSLSLEVNRILHRERSQYQDVMVLETKSHGRALILDGIIQSTERDEFSYQEMIAFLPLC 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVARE  KHP VE    VEID +V+EVSKKYLP M VGL  P++
Sbjct: 78  SHPNPKTVLIVGGGDGGVAREAAKHPQVERIVQVEIDAKVLEVSKKYLPSMGVGLEHPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T++VGDGF F+ +H+ EFDVIITDSSDPVGPAE LF+ SYF LM  AL+PGGIVCSQAGT
Sbjct: 138 TLNVGDGFEFLKQHRGEFDVIITDSSDPVGPAECLFKESYFSLMKTALKPGGIVCSQAGT 197

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W +LD V  TLQHC SVFP
Sbjct: 198 AWANLDHVTQTLQHCKSVFP 217

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021423|ref|XP_003694565.1| PREDICTED: spermidine synthase-like [Apis florea]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 151/200 (75%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           GVSLSL+V +  +   S          K  G  LILDGIIQCTE DEFSY EMIAFLPLC
Sbjct: 18  GVSLSLEVVKVLHRERSQYQDVMVLETKSHGRTLILDGIIQCTERDEFSYQEMIAFLPLC 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVAREV KHP VE    VEID +V+EVSKKYLP M VGL  P++
Sbjct: 78  SHPNPKTVLIVGGGDGGVAREVAKHPQVERIVQVEIDPKVLEVSKKYLPSMGVGLDHPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+++GDGF+F+ +H  +FDVIITDSSDPVGPAE LFQ SYF LM  AL+PGGIVCSQAGT
Sbjct: 138 TLNIGDGFQFLKQHSGQFDVIITDSSDPVGPAECLFQESYFNLMKSALKPGGIVCSQAGT 197

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W +LD V  TLQ C S+FP
Sbjct: 198 AWLNLDHVTQTLQRCKSLFP 217

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723867|ref|XP_003400308.1| PREDICTED: spermidine synthase-like [Bombus terrestris]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 151/200 (75%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           GVSLSL+V +  +   S        + K  G  LILDGIIQCTE DEFSY EMIAFLPLC
Sbjct: 19  GVSLSLEVLDVIHRERSEYQEVMVVDTKSHGRTLILDGIIQCTEKDEFSYQEMIAFLPLC 78

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVAREV KHP VE    VEID++V+EVS+KYLP M VGL  P++
Sbjct: 79  SHPNPKTVLIVGGGDGGVAREVAKHPLVERIVQVEIDSKVLEVSRKYLPTMGVGLDHPKV 138

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T++VGDGF+F+  H  EFDVIITDSSDP+GPAE LF  SYF LM  AL+PGGIVCSQAGT
Sbjct: 139 TLNVGDGFQFLQRHSGEFDVIITDSSDPIGPAECLFHESYFNLMKNALKPGGIVCSQAGT 198

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W +L  V  TLQHC S+FP
Sbjct: 199 AWLNLSHVTQTLQHCKSLFP 218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762382|ref|XP_001120306.1| PREDICTED: spermidine synthase [Apis mellifera]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 150/200 (75%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           GVSLSL+V +  +   S          K  G  LILDGIIQCTE DEFSY EMIAFLPLC
Sbjct: 18  GVSLSLEVVKVLHRERSQYQDVMVLETKSHGRTLILDGIIQCTERDEFSYQEMIAFLPLC 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVAREV KHP VE    VEID +V+EVSKKYLP M VGL  P++
Sbjct: 78  SHPNPKTVLIVGGGDGGVAREVAKHPQVERIVQVEIDPKVLEVSKKYLPSMGVGLDHPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+++GDGF+F+ +H  +FDVIITDSSDPVGPAE LFQ SYF LM  AL+P GIVCSQAGT
Sbjct: 138 TLNIGDGFQFLKQHSGQFDVIITDSSDPVGPAECLFQESYFNLMKSALKPDGIVCSQAGT 197

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W +LD V  TLQ C S+FP
Sbjct: 198 AWLNLDHVTQTLQRCKSLFP 217

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422672|ref|XP_003493245.1| PREDICTED: spermidine synthase-like [Bombus impatiens]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 150/199 (75%), Gaps = 8/199 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           GVSLSL+V +  +   S        + K  G  LILDGIIQCTE DEFSY EMIAFLPLC
Sbjct: 19  GVSLSLEVLDVIHRERSEYQEVMVIDTKSHGRTLILDGIIQCTEKDEFSYQEMIAFLPLC 78

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNPK VLIVGGGDGGVAREV KHP VE    VEID++V+EVS+KYLP M VGL  P++
Sbjct: 79  SHPNPKTVLIVGGGDGGVAREVAKHPLVERIVQVEIDSKVLEVSRKYLPTMGVGLDHPKV 138

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T++VGDGF+F+  H  EFDVIITDSSDP+GPAE LF  SYF LM  AL+PGGIVCSQAGT
Sbjct: 139 TLNVGDGFQFLQRHIGEFDVIITDSSDPIGPAECLFHESYFNLMKNALKPGGIVCSQAGT 198

Query: 174 LWYSLDCVGNTLQHCASVF 192
            W +L  V  TLQHC S+F
Sbjct: 199 AWLNLSHVTQTLQHCKSLF 217

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242246955|ref|NP_001156229.1| spermidine synthase-like [Acyrthosiphon pisum] gi|239788020|dbj|BAH70707.1| ACYPI006984 [Acyrthosiphon pisum]

 Score =  258 bits (660), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 148/201 (73%), Gaps = 8/201 (3%)

Query: 2   GVSLSLQVEEPFYPSSSNRKEF--------GTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G S S++VE+  +   S  +E         G  L+LDG+IQCTEFDE+SY EMI+FLPL 
Sbjct: 18  GRSFSMEVEQVLHQEQSKYQEILVLKTKSHGVVLVLDGMIQCTEFDEYSYQEMISFLPLF 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHP P++VLIVGGGDGGVAREV KHP VE+   VEID+RVIE+SKKYLP MA G + P++
Sbjct: 78  SHPKPQRVLIVGGGDGGVAREVAKHPLVETIDQVEIDDRVIELSKKYLPFMAEGFNSPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +HV DGF+FM EH Q +DVIITDSSDP+GPA SLFQ SYFELM RALRPGGIVCSQA T
Sbjct: 138 NLHVADGFKFMEEHFQYYDVIITDSSDPIGPAVSLFQKSYFELMKRALRPGGIVCSQADT 197

Query: 174 LWYSLDCVGNTLQHCASVFPR 194
            W  L    +   HC +VF +
Sbjct: 198 FWGHLKNAASMRNHCKAVFAK 218

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147902014|ref|NP_001084875.1| spermidine synthase [Xenopus laevis] gi|47123853|gb|AAH70692.1| MGC83147 protein [Xenopus laevis]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 147/200 (73%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSL+VEE  Y   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 19  GQALSLEVEEVLYHQRSPFQEILVLRSKTYGNVLVLDGLIQCTERDEFSYQEMIANLPLC 78

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI VSKKYLPGMA+G S P+L
Sbjct: 79  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEEVINVSKKYLPGMAIGYSSPKL 138

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF+FM ++Q  FD+IITDSSDPVGPAESLF+ SY++LM  ALR GGI+C Q   
Sbjct: 139 TLHVGDGFQFMKQNQDAFDIIITDSSDPVGPAESLFKESYYQLMKTALREGGILCCQGEC 198

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C ++FP
Sbjct: 199 QWLHLDLIKEMNQFCKTLFP 218

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328698378|ref|XP_001944178.2| PREDICTED: spermidine synthase-like [Acyrthosiphon pisum]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 145/201 (72%), Gaps = 8/201 (3%)

Query: 2   GVSLSLQVEEPFYPSSSNRKEF--------GTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G S S++VE+  +   S  +E         G  L+LDG+IQCTEFDE+SY EMI+FLPL 
Sbjct: 18  GRSFSMEVEQVLHKEQSKFQEILVLKTKSHGVVLVLDGMIQCTEFDEYSYQEMISFLPLF 77

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHP P++VLIVGGGDGGVAREV K+P VE    VEID RVIE+SKKYLP MA G  +P++
Sbjct: 78  SHPKPQRVLIVGGGDGGVAREVAKYPLVEIIDQVEIDERVIELSKKYLPFMAQGFDNPKV 137

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +HV DGF+FM EH Q +DVIITDSSDP+GPA SLFQ SYFELM RALRPGGIVCSQA T
Sbjct: 138 NLHVADGFKFMEEHFQYYDVIITDSSDPIGPATSLFQKSYFELMKRALRPGGIVCSQADT 197

Query: 174 LWYSLDCVGNTLQHCASVFPR 194
            W  L        HC  VFP+
Sbjct: 198 FWGHLKNAAAMYNHCKGVFPK 218

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301620173|ref|XP_002939455.1| PREDICTED: spermidine synthase-like [Xenopus (Silurana) tropicalis]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 148/200 (74%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G ++SL+VEE  Y   S+ +E        +G  L+LDG+IQCTE DEFSY EMIA LPL 
Sbjct: 29  GQAMSLEVEEVLYHKQSSFQEILVFRSKTYGNVLVLDGLIQCTERDEFSYQEMIANLPLY 88

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI VSKKYLPGMA+G S P+L
Sbjct: 89  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEEVINVSKKYLPGMAIGYSSPKL 148

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF+FM ++Q  FDVIITDSSDPVGPAESLF+ SY++LM  ALR GGI+C Q   
Sbjct: 149 TLHVGDGFQFMKQNQDAFDVIITDSSDPVGPAESLFKESYYQLMKTALREGGILCCQGEC 208

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C ++FP
Sbjct: 209 QWLHLDLIKEMHQFCKTLFP 228

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
MGI|MGI:102690	302	Srm "spermidine synthase" [Mus	0.974	0.635	0.61	3.1e-60
UNIPROTKB|P19623	302	SRM "Spermidine synthase" [Hom	0.974	0.635	0.6	3.9e-60
RGD|620796	302	Srm "spermidine synthase" [Rat	0.974	0.635	0.61	3.9e-60
FB|FBgn0037723	299	SpdS "Spermidine Synthase" [Dr	0.984	0.648	0.584	8.1e-60
UNIPROTKB|I3LPB8	302	SRM "Uncharacterized protein"	0.974	0.635	0.6	1.7e-59
UNIPROTKB|J9P2P6	247	SRM "Uncharacterized protein"	0.878	0.700	0.647	1.5e-58
ZFIN|ZDB-GENE-040426-1183	289	srm "spermidine synthase" [Dan	0.974	0.664	0.59	2.2e-57
UNIPROTKB|E1BM12	302	SRM "Uncharacterized protein"	0.974	0.635	0.575	3.3e-56
ASPGD|ASPL0000062169	292	spdA [Emericella nidulans (tax	0.873	0.589	0.610	4.8e-55
DICTYBASE|DDB_G0268630	284	spsA "Spermidine synthase" [Di	0.984	0.683	0.524	7e-54

MGI|MGI:102690 Srm "spermidine synthase" [Mus musculus (taxid:10090)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 122/200 (61%), Positives = 144/200 (72%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct:    30 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VIEVSKK+LPGMAVG S  +L
Sbjct:    90 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVGFSSSKL 149

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  GI+C Q   
Sbjct:   150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGEC 209

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  LD +      C S+FP
Sbjct:   210 QWLHLDLIKEMRHFCKSLFP 229

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

UNIPROTKB|P19623 SRM "Spermidine synthase" [Homo sapiens (taxid:9606)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 120/200 (60%), Positives = 145/200 (72%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct:    30 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct:    90 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 149

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct:   150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 209

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  LD +    Q C S+FP
Sbjct:   210 QWLHLDLIKEMRQFCQSLFP 229

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IDA

GO:0004766 "spermidine synthase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|620796 Srm "spermidine synthase" [Rattus norvegicus (taxid:10116)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 122/200 (61%), Positives = 144/200 (72%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct:    30 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VIEVSKK+LPGMAVG S  +L
Sbjct:    90 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVGYSSSKL 149

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  GI+C Q   
Sbjct:   150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGEC 209

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  LD +      C S+FP
Sbjct:   210 QWLHLDLIKEMRHFCKSLFP 229

GO:0004766 "spermidine synthase activity" evidence=ISO;IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

FB|FBgn0037723 SpdS "Spermidine Synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 118/202 (58%), Positives = 148/202 (73%)

Query:     2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G S SL+V+E  +   S  ++        +G  LILDGIIQCT  DEFSY EMI+FLPLC
Sbjct:    31 GQSFSLKVKEVIHKEKSRFQDIQIVETETYGRCLILDGIIQCTARDEFSYQEMISFLPLC 90

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             +HPNPKKVLIVGGGDGGVAREV+KHP VE  + VEID+RV+E+SK+YLP MA G ++ +L
Sbjct:    91 AHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKL 150

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
              + +GDGF +M +H+ EFDVIITDSSDP+GPA SLFQ SY+ELM  AL+  GIVCSQ G+
Sbjct:   151 KLTIGDGFDYMKKHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGS 210

Query:   174 LWYSLDCVGNTLQHCASVFPRL 195
              W  LD +  T+  C   F ++
Sbjct:   211 FWLDLDYIKKTMSGCKEHFAKV 232

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|I3LPB8 SRM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 120/200 (60%), Positives = 144/200 (72%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct:    30 GQALSLQVEQLLHHQRSRYQDILVFRSKSYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHPNP+KVLI+GGGDGGV REV+KHP+VES    EID  VI+VSKK+LPGMAV  S  +L
Sbjct:    90 SHPNPRKVLIIGGGDGGVLREVVKHPAVESVVQCEIDEDVIQVSKKFLPGMAVSYSSSKL 149

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  GI+C Q   
Sbjct:   150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEEGILCCQGEC 209

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  LD +    Q C S+FP
Sbjct:   210 QWLHLDLIKEMRQFCKSLFP 229

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

UNIPROTKB|J9P2P6 SRM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 112/173 (64%), Positives = 133/173 (76%)

Query:    21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHP+P+KVLI+GGGDGGV REVLKH S
Sbjct:     2 KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPDPRKVLIIGGGDGGVLREVLKHSS 61

Query:    81 VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
             VES    EID  VI+VSKK+LPGMAVG S  +LT+HVGDGF FM ++Q  FDVIITDSSD
Sbjct:    62 VESVVQCEIDEDVIQVSKKFLPGMAVGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD 121

Query:   141 PVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
             P+GPAESLF+ SY++LM  AL+  G++C Q    W  LD +    Q C S+FP
Sbjct:   122 PMGPAESLFKESYYQLMKTALKDNGVLCCQGECQWLHLDLIKQMRQFCKSLFP 174

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1183 srm "spermidine synthase" [Danio rerio (taxid:7955)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 118/200 (59%), Positives = 137/200 (68%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G ++SLQVEE  Y   S          K +G  LILDG+IQCTE DEFSY EMIA LPLC
Sbjct:    18 GQAMSLQVEEVLYHKKSKFQDVMVFKSKTYGNVLILDGVIQCTERDEFSYQEMIANLPLC 77

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
              HP PKKVLI+GGGDGGV REV+KHP VES    EID   I VSKKYLPGMA G   P+L
Sbjct:    78 CHPCPKKVLIIGGGDGGVLREVVKHPLVESVVQCEIDEDAINVSKKYLPGMAKGFFSPKL 137

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FD+IITDSSDPVGPAESL + SY++LM  AL  GGI+C Q   
Sbjct:   138 TLHVGDGFEFMKKNQDAFDIIITDSSDPVGPAESLLKESYYQLMKTALCEGGILCCQGEC 197

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  L+ +      C ++FP
Sbjct:   198 QWLHLELIKEMRTFCKTLFP 217

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BM12 SRM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 115/200 (57%), Positives = 139/200 (69%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct:    30 GQALSLQVEQLLHHQRSRYQDILVFRSKSYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 89

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHPNP+KVLI+GGGDGGV REV+KH SVE+         VI+VSKK+LP MAVG S  +L
Sbjct:    90 SHPNPRKVLIIGGGDGGVLREVVKHSSVEAVVQCSPPQDVIQVSKKFLPSMAVGYSSSKL 149

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  GI+C Q   
Sbjct:   150 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGEC 209

Query:   174 LWYSLDCVGNTLQHCASVFP 193
              W  LD +      C S+FP
Sbjct:   210 QWLHLDLIKEMRHFCKSLFP 229

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 105/172 (61%), Positives = 127/172 (73%)

Query:    22 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSV 81
             ++GT L+LD +IQCTE DEFSY EMI  L + SHPNPKKVL++GGGDGGV REV+KH +V
Sbjct:    51 DYGTVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHETV 110

Query:    82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
             E A L +ID  VI VSKKYLPGM++G   P + VHVGDGF F+ + Q EFDVIITDSSDP
Sbjct:   111 EEAILCDIDEAVIRVSKKYLPGMSIGFQHPNVKVHVGDGFEFLKQRQNEFDVIITDSSDP 170

Query:   142 VGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
              GPAESLFQ  YFEL+  ALR GG++ +QA   W  L  + +  + C  VFP
Sbjct:   171 EGPAESLFQKPYFELLRDALRDGGVITTQAENQWLHLPLIADLKKACNEVFP 222

GO:0016768 "spermine synthase activity" evidence=RCA

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 106/202 (52%), Positives = 137/202 (67%)

Query:     2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             G S SL+VE+  +   S          K FG  L+LDG+IQ TE DEF+Y EMI  +PL 
Sbjct:    18 GNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLF 77

Query:    54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
             SHP+PK+VL+VGGGDGGV REV+KHP VES  L EID  VIE S+ +LP M VG   P++
Sbjct:    78 SHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPNMRVGFDHPKV 137

Query:   114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             T+ +GDG  FM + + EFDVIITDSSDP+GPA+ LF+ +Y+EL+  AL PGGIVCSQ  +
Sbjct:   138 TLFIGDGMEFMRQRKGEFDVIITDSSDPIGPAQGLFERAYYELLKAALAPGGIVCSQCES 197

Query:   174 LWYSLDCVGNTLQHCASVFPRL 195
             +W  LD +      C  ++P +
Sbjct:   198 MWLHLDTIKGLTTFCKELYPNV 219

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9MRW0	SPEE_CALBD	2, ., 5, ., 1, ., 1, 6	0.5086	0.8781	0.6223	yes	N/A
A9VSG3	SPEE_BACWK	2, ., 5, ., 1, ., 1, 6	0.5083	0.8984	0.6436	yes	N/A
B0K172	SPEE_THEPX	2, ., 5, ., 1, ., 1, 6	0.4767	0.8730	0.6209	yes	N/A
B0SI93	SPEE_LEPBA	2, ., 5, ., 1, ., 1, 6	0.4797	0.8781	0.6156	yes	N/A
Q64674	SPEE_MOUSE	2, ., 5, ., 1, ., 1, 6	0.61	0.9746	0.6357	yes	N/A
B0K9I5	SPEE_THEP3	2, ., 5, ., 1, ., 1, 6	0.4767	0.8730	0.6209	yes	N/A
Q814Q1	SPEE1_BACCR	2, ., 5, ., 1, ., 1, 6	0.5083	0.8984	0.6436	yes	N/A
Q8RA94	SPEE1_THETN	2, ., 5, ., 1, ., 1, 6	0.4767	0.8730	0.6209	yes	N/A
A5N219	SPEE_CLOK5	2, ., 5, ., 1, ., 1, 6	0.4736	0.8680	0.6218	yes	N/A
Q5WB31	SPEE_BACSK	2, ., 5, ., 1, ., 1, 6	0.5028	0.8781	0.6290	yes	N/A
Q884N3	SPEE_PSESM	2, ., 5, ., 1, ., 1, 6	0.4375	0.8883	0.6118	yes	N/A
B1I5Z0	SPEE_DESAP	2, ., 5, ., 1, ., 1, 6	0.4795	0.8680	0.6218	yes	N/A
A7GVB2	SPEE_BACCN	2, ., 5, ., 1, ., 1, 6	0.5139	0.8984	0.6436	yes	N/A
Q09741	SPEE_SCHPO	2, ., 5, ., 1, ., 1, 6	0.5297	0.9847	0.6510	yes	N/A
Q9K6B8	SPEE_BACHD	2, ., 5, ., 1, ., 1, 6	0.5027	0.8984	0.6436	yes	N/A
P70998	SPEE_BACSU	2, ., 5, ., 1, ., 1, 6	0.4461	0.9796	0.6992	yes	N/A
B9E5S1	SPEE_CLOK1	2, ., 5, ., 1, ., 1, 6	0.4736	0.8680	0.6218	yes	N/A
Q9XY92	SPEE_DICDI	2, ., 5, ., 1, ., 1, 6	0.5247	0.9847	0.6830	yes	N/A
Q9X6R0	SPEE1_PSEAE	2, ., 5, ., 1, ., 1, 6	0.4375	0.8883	0.6118	yes	N/A
A3DDA0	SPEE_CLOTH	2, ., 5, ., 1, ., 1, 6	0.4971	0.8781	0.6290	yes	N/A
Q57761	SPEE_METJA	2, ., 5, ., 1, ., 1, 6	0.4072	0.9441	0.6348	yes	N/A
Q72X78	SPEE_BACC1	2, ., 5, ., 1, ., 1, 6	0.5027	0.8984	0.6436	yes	N/A
Q81JT0	SPEE1_BACAN	2, ., 5, ., 1, ., 1, 6	0.5027	0.8984	0.6436	yes	N/A
P19623	SPEE_HUMAN	2, ., 5, ., 1, ., 1, 6	0.6	0.9746	0.6357	yes	N/A
Q8EXA3	SPEE2_LEPIN	2, ., 5, ., 1, ., 1, 6	0.4117	0.9847	0.6928	yes	N/A
A4XKM9	SPEE_CALS8	2, ., 5, ., 1, ., 1, 6	0.5028	0.8781	0.6223	yes	N/A
O66473	SPEE1_AQUAE	2, ., 5, ., 1, ., 1, 6	0.5174	0.8730	0.6142	yes	N/A
Q12074	SPEE_YEAST	2, ., 5, ., 1, ., 1, 6	0.505	0.9746	0.6552	yes	N/A
B0STV8	SPEE_LEPBP	2, ., 5, ., 1, ., 1, 6	0.4797	0.8781	0.6156	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.16	0.914
3rd Layer	2.5.1	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	197
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	1e-86
PLN02366	308	PLN02366, PLN02366, spermidine synthase	1e-86
TIGR00417	271	TIGR00417, speE, spermidine synthase	1e-85
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	4e-85
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	2e-74
PLN02823	336	PLN02823, PLN02823, spermine synthase	8e-45
PRK03612	521	PRK03612, PRK03612, spermidine synthase; Provision	2e-34
COG4262	508	COG4262, COG4262, Predicted spermidine synthase wi	2e-31
PRK01581	374	PRK01581, speE, spermidine synthase; Validated	1e-19
PRK04457	262	PRK04457, PRK04457, spermidine synthase; Provision	5e-15
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-12
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	3e-09
PRK00536	262	PRK00536, speE, spermidine synthase; Provisional	2e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001
COG2521	287	COG2521, COG2521, Predicted archaeal methyltransfe	0.004

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score =  254 bits (652), Expect = 1e-86
 Identities = 101/173 (58%), Positives = 129/173 (74%)

Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           K FG  L+LDG +Q TE DEF Y EMIA +PLCSHPNPKKVLI+GGGDGG  REV+KHPS
Sbjct: 39  KTFGKILVLDGRVQLTERDEFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPS 98

Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
           VE   LVEID +VIE SKK+LP +A G  DPR+ V +GDGF+F+ ++  EFDVII DS+D
Sbjct: 99  VEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTD 158

Query: 141 PVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
           PVGPAE+LF   +++L+ RAL+  G+  +QA + W  L+ + N L++   VFP
Sbjct: 159 PVGPAENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFP 211

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score =  257 bits (658), Expect = 1e-86
 Identities = 99/200 (49%), Positives = 136/200 (68%), Gaps = 9/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ ++        +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 28  GEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 87

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL+VGGGDGGV RE+ +H SVE   + EID  VI+VSKK+ P +AVG  DPR+
Sbjct: 88  SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV 147

Query: 114 TVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            +H+GDG  F+    +  +D II DSSDPVGPA+ LF+  +FE ++RALRPGG+VC+QA 
Sbjct: 148 NLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207

Query: 173 TLWYSLDCVGNTLQHCASVF 192
           ++W  +D + + +  C   F
Sbjct: 208 SMWLHMDLIEDLIAICRETF 227

Length = 308

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score =  253 bits (648), Expect = 1e-85
 Identities = 91/174 (52%), Positives = 125/174 (71%)

Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           + FG  L+LDG++Q TE DEF Y EMI  +PL +HPNPK VL++GGGDGGV REVLKH S
Sbjct: 36  EAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKS 95

Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
           VESA LV+ID +VIE+S+KYLP +A    DPR+ + + DGF+F+++ +  FDVII DS+D
Sbjct: 96  VESATLVDIDEKVIELSRKYLPNLAGSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTD 155

Query: 141 PVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194
           PVGPAE+LF   ++EL+ +AL P GI  +Q+ + W  L+ + +  +     FP 
Sbjct: 156 PVGPAETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFPI 209

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score =  252 bits (646), Expect = 4e-85
 Identities = 93/174 (53%), Positives = 120/174 (68%), Gaps = 1/174 (0%)

Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
            EFG  L LDG +  TE DEF Y EM+  +PL +HPNPK+VLI+GGGDGG  REVLKHPS
Sbjct: 40  PEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPS 99

Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVGL-SDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139
           VE   LVEID RV+EV +KYLP +A G   DPR+ + +GDG +F++E +  FDVII DS+
Sbjct: 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST 159

Query: 140 DPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
           DPVGPAE LF   ++E   RAL+  GI  +Q+G+ +Y  D + +  +    VFP
Sbjct: 160 DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP 213

Length = 283

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score =  225 bits (576), Expect = 2e-74
 Identities = 85/176 (48%), Positives = 122/176 (69%)

Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           ++FG  L+LDG++Q TE DEF Y EM+A +PL +HPNPK+VLI+GGGDGG  REVLKH  
Sbjct: 40  EDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLP 99

Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
           VE   +VEID  VIE+++KYLP  + G  DPR+ + + DG  F+ + +++FDVII DS+D
Sbjct: 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTD 159

Query: 141 PVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196
           PVGPAE+LF   ++E   RAL+  GI  +QAG+ +   + +    ++ + VF  + 
Sbjct: 160 PVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP 215

Length = 282

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score =  150 bits (382), Expect = 8e-45
 Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 15/183 (8%)

Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           K FG  LI+DG +Q  E DEF Y E +    L  HPNPK V I+GGG+G  AREVL+H +
Sbjct: 67  KPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKT 126

Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
           VE   + +ID  V++  +K+L        D RL + + D    + +  ++FDVII D +D
Sbjct: 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLAD 186

Query: 141 PV--GPAESLFQASYFELM-SRALRPGGIVCSQAG-------TLWYSLDCVGNTLQHCAS 190
           PV  GP   L+  S++E +    L PGGI  +QAG          +S   + NTL+    
Sbjct: 187 PVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFS--SIYNTLRQ--- 241

Query: 191 VFP 193
           VF 
Sbjct: 242 VFK 244

Length = 336

>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional

 Score =  126 bits (320), Expect = 2e-34
 Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 7/166 (4%)

Query: 27  LILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYL 86
           L L+G +Q +  DE+ Y E +    + +   P++VL++GGGDG   REVLK+P VE   L
Sbjct: 267 LYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTL 326

Query: 87  VEIDNRVIEVSKKYLPGMAV---GLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143
           V++D  + E+++      A+    L DPR+TV   D F ++ +  ++FDVII D  DP  
Sbjct: 327 VDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSN 386

Query: 144 PAES-LFQASYFELMSRALRPGGIVCSQAGTLWY---SLDCVGNTL 185
           PA   L+   ++ L+ R L P G++  Q+ + ++   +   +  TL
Sbjct: 387 PALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATL 432

Length = 521

>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

 Score =  118 bits (297), Expect = 2e-31
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 7/167 (4%)

Query: 27  LILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYL 86
           L LDG +Q +  DE+ Y E + +  L S    + VL++GGGDG   RE+LK+P VE   L
Sbjct: 259 LYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITL 318

Query: 87  VEIDNRVIEVSKKYLPGMAV---GLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143
           V++D R+IE++       A+     SDPR+TV   D F+++      FDV+I D  DP  
Sbjct: 319 VDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPST 378

Query: 144 PAES-LFQASYFELMSRALRPGGIVCSQAGTLWYSLD---CVGNTLQ 186
           P+   L+   ++ L+SR L   G++  QAG+ +++      +  T++
Sbjct: 379 PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIK 425

Length = 508

>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated

 Score = 85.0 bits (210), Expect = 1e-19
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 27  LILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYL 86
           L LD  +Q +  DE  Y E +    +    +PK+VLI+GGGDG   REVLK+ +V    L
Sbjct: 120 LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDL 179

Query: 87  VEIDNRVIEVSKKYLPGMAVGLS-----DPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
           V++D  +I +++  +P + V L+     D R+ VHV D   F+S     +DVII D  DP
Sbjct: 180 VDLDGSMINMARN-VPEL-VSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDP 237

Query: 142 VGPAES-LFQASYFELMSRALRPGGIVCSQAGT------LWYSLDCVGNTLQH 187
                S L+ +  F  ++  L   G    Q+ +      +++S   +GNT++H
Sbjct: 238 ATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWS---IGNTIEH 287

Length = 374

>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 40  EFSYSE-MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVS 97
           E +Y+  M+ FL     P P+ +L +G G G +A+ +  + P       VEI+ +VI V+
Sbjct: 50  ELAYTRAMMGFLLFN--PRPQHILQIGLGGGSLAKFIYTYLPDTRQT-AVEINPQVIAVA 106

Query: 98  KK--YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFE 155
           +    LP      +  R  V   DG  +++ H+   DVI+ D  D  G  ++L    +F+
Sbjct: 107 RNHFELPE-----NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFD 161

Query: 156 LMSRALRPGGI 166
               AL   GI
Sbjct: 162 DCRNALSSDGI 172

Length = 262

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 60  KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
           +VL +G G G +A  +   P       V+I    +E+++K     A  L    + V  GD
Sbjct: 1   RVLDLGCGTGALALALASGP-GARVTGVDISPVALELARK----AAAALLADNVEVLKGD 55

Query: 120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170
                 E  + FDVII   SDP         A + E   R L+PGG++   
Sbjct: 56  AEELPPEADESFDVII---SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 58  PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
             +VL  G G G       +         VE+D     ++++ L    +    PR+ V V
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGL---APRVRVVV 57

Query: 118 GDGFRFMSEHQQEFDVIITD---SSDPVGPAESLFQASYF-ELMSRALRPGGIV 167
           GD    +      FD+++ +         P ++      F     R L+PGG++
Sbjct: 58  GDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVL 111

This family contains methyltransferase domains. Length = 117

>gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 44  SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG 103
           SE++A +  C+    K+VLIV G D  +A ++ K+ +      V+ D ++++    + P 
Sbjct: 59  SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116

Query: 104 MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138
                ++   T       + +    +++D+II   
Sbjct: 117 FHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQ 147

Length = 262

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 58  PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
             +VL +G G G +A E+ +         V++   ++E++++     A     PR+T   
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE----NAKLALGPRITFVQ 57

Query: 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
           GD      +  + FD +                    + ++  L+PGG +
Sbjct: 58  GD-APDALDLLEGFDAVFIGGG-------GGDLLELLDALASLLKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 62  LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
           L +G G G + R +L+         V+I    +E + + L      L   R+ + V D  
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAA-LGLLDAVRVRLDVLDAI 59

Query: 122 RFMSEHQQEFDVIITDSSDPVGPAESLFQA-----SYFELMSRALRPGGIV 167
                    FDV++         A ++        +    + R L+PGG++
Sbjct: 60  ---DLDPGSFDVVV---------ASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 59  KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118
           ++VL    G G  A E L+  ++     VE D  V+E++K  L   +  L +  + + +G
Sbjct: 136 ERVLDTCTGLGYTAIEALERGAIH-VITVEKDPNVLELAK--LNPWSRELFEIAIKIILG 192

Query: 119 DGFRFMSEHQQE-FDVIITDSSDP--VGPAESLFQASYFELMSRALRPGGIV---CSQAG 172
           D +  + +   E FD II    DP     A  L+   ++  + R L+ GG +       G
Sbjct: 193 DAYEVVKDFDDESFDAII---HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249

Query: 173 TLWYSLD 179
             +  LD
Sbjct: 250 KRYRGLD 256

Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PLN02366	308	spermidine synthase	100.0
PRK00811	283	spermidine synthase; Provisional	100.0
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	100.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.98
PLN02823	336	spermine synthase	99.98
PRK00536	262	speE spermidine synthase; Provisional	99.97
PRK01581	374	speE spermidine synthase; Validated	99.97
PRK03612	521	spermidine synthase; Provisional	99.94
KOG1562|consensus	337		99.93
PRK04457	262	spermidine synthase; Provisional	99.89
COG4262	508	Predicted spermidine synthase with an N-terminal m	99.87
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.81
COG2521	287	Predicted archaeal methyltransferase [General func	99.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.78
COG4123	248	Predicted O-methyltransferase [General function pr	99.76
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.76
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.73
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.73
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.73
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.72
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.72
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.7
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.69
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.69
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.69
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.69
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.68
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.68
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.68
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.68
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.68
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.68
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.67
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.67
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.67
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.67
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.66
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.66
PLN02244	340	tocopherol O-methyltransferase	99.66
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.66
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.66
KOG1540|consensus	296		99.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.64
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.62
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.62
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.62
PLN02490	340	MPBQ/MSBQ methyltransferase	99.61
PRK11207	197	tellurite resistance protein TehB; Provisional	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.61
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.61
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.61
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.6
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.6
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.6
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.59
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.59
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.58
PRK07402	196	precorrin-6B methylase; Provisional	99.58
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.58
PRK14967	223	putative methyltransferase; Provisional	99.58
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.58
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.58
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.58
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.58
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.58
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.57
PLN02336	475	phosphoethanolamine N-methyltransferase	99.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.57
PRK04266	226	fibrillarin; Provisional	99.57
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.56
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.56
COG4122	219	Predicted O-methyltransferase [General function pr	99.56
PRK08317	241	hypothetical protein; Provisional	99.56
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.56
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.55
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.55
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.55
PRK12335	287	tellurite resistance protein TehB; Provisional	99.54
PLN02476	278	O-methyltransferase	99.54
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.54
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.54
PRK06922	677	hypothetical protein; Provisional	99.53
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.53
COG2890	280	HemK Methylase of polypeptide chain release factor	99.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.53
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.53
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.52
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.52
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.52
PLN03075	296	nicotianamine synthase; Provisional	99.52
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.52
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.51
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.51
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.51
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.5
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.5
PTZ00146	293	fibrillarin; Provisional	99.5
PHA03411	279	putative methyltransferase; Provisional	99.5
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.5
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.49
PLN02672	1082	methionine S-methyltransferase	99.49
KOG1270|consensus	282		99.49
PRK05785	226	hypothetical protein; Provisional	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.48
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.47
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.47
TIGR00438	188	rrmJ cell division protein FtsJ.	99.46
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.46
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.46
KOG4300|consensus	252		99.46
PRK14968	188	putative methyltransferase; Provisional	99.45
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.45
PHA03412	241	putative methyltransferase; Provisional	99.45
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.44
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.44
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.44
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.44
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.43
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.42
KOG2904|consensus	328		99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.4
PRK06202	232	hypothetical protein; Provisional	99.39
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.39
KOG1271|consensus	227		99.38
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.38
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.37
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.37
TIGR03438	301	probable methyltransferase. This model represents	99.35
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.35
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.35
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.35
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.34
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.34
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.33
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.32
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.32
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.3
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.29
KOG1541|consensus	270		99.29
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.29
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.27
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.26
KOG2899|consensus	288		99.26
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.25
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.23
KOG3010|consensus	261		99.22
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.22
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.21
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.2
KOG3191|consensus	209		99.2
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.19
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.19
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.19
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.15
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.15
KOG1663|consensus	237		99.14
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.12
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.11
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.11
COG2520	341	Predicted methyltransferase [General function pred	99.1
KOG1661|consensus	237		99.1
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.09
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.07
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.05
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.05
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.04
KOG2361|consensus	264		99.01
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.0
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.99
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.99
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.99
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.99
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.98
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.94
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.92
KOG2940|consensus	325		98.91
KOG2352|consensus	482		98.9
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.88
KOG1500|consensus	517		98.87
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.84
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.84
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.83
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.83
KOG3420|consensus	185		98.81
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.81
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.79
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.78
KOG1709|consensus	271		98.78
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.77
KOG1499|consensus	346		98.76
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.75
KOG0820|consensus	315		98.74
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.73
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.71
KOG2915|consensus	314		98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.68
KOG1975|consensus	389		98.68
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.63
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.61
PRK10742	250	putative methyltransferase; Provisional	98.56
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.53
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.5
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.49
KOG3178|consensus	342		98.47
KOG1122|consensus	460		98.47
COG4076	252	Predicted RNA methylase [General function predicti	98.46
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.44
PRK04148	134	hypothetical protein; Provisional	98.42
KOG2187|consensus	534		98.42
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.36
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.32
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.29
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.29
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.28
KOG3115|consensus	249		98.27
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.25
KOG2198|consensus	375		98.25
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.23
KOG4589|consensus	232		98.2
KOG3045|consensus	325		98.11
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.1
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.1
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.09
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.08
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	98.07
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.05
COG3897	218	Predicted methyltransferase [General function pred	98.01
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.96
KOG2730|consensus	263		97.96
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.96
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.96
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.95
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.92
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.88
KOG0822|consensus	649		97.84
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.83
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.8
KOG3987|consensus	288		97.77
PF13679	141	Methyltransf_32: Methyltransferase domain	97.74
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.71
KOG2352|consensus	482		97.69
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.64
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.62
COG0286	489	HsdM Type I restriction-modification system methyl	97.61
KOG1269|consensus	364		97.53
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.51
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.46
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.45
PRK11524	284	putative methyltransferase; Provisional	97.44
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.43
KOG3201|consensus	201		97.39
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.38
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.36
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.35
KOG1099|consensus	294		97.32
KOG1596|consensus	317		97.3
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.2
KOG1331|consensus	293		97.12
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.12
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.11
KOG2671|consensus	421		97.08
PRK13699	227	putative methylase; Provisional	96.93
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.93
PTZ00357	1072	methyltransferase; Provisional	96.84
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.82
KOG1253|consensus	525		96.79
PHA01634	156	hypothetical protein	96.72
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.72
KOG1098|consensus	780		96.68
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.6
COG4798	238	Predicted methyltransferase [General function pred	96.56
KOG0024|consensus	354		96.4
COG1568	354	Predicted methyltransferases [General function pre	96.4
KOG2798|consensus	369		96.4
KOG2793|consensus	248		96.37
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.27
KOG1501|consensus	636		96.27
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.26
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.23
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.2
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.19
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.11
PRK11524	284	putative methyltransferase; Provisional	96.1
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.04
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.94
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.85
PRK10458	467	DNA cytosine methylase; Provisional	95.79
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.78
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.65
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.64
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	95.35
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.34
KOG2078|consensus	495		95.32
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.31
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.25
PRK13699	227	putative methylase; Provisional	95.22
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	95.19
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.08
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.07
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.95
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.95
KOG1227|consensus	351		94.92
COG4301	321	Uncharacterized conserved protein [Function unknow	94.88
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.82
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.82
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.71
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.68
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.64
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.64
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.6
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.6
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.47
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.44
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.23
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	94.13
KOG2912|consensus	419		94.01
COG4121	252	Uncharacterized conserved protein [Function unknow	93.96
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.93
KOG0821|consensus	326		93.87
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.82
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.72
KOG2920|consensus	282		93.68
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.66
KOG4058|consensus	199		93.62
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.51
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.47
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.47
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.43
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.27
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.26
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.14
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.09
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.01
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.01
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	92.96
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.93
PLN02740	381	Alcohol dehydrogenase-like	92.77
PTZ00117	319	malate dehydrogenase; Provisional	92.75
PLN02827	378	Alcohol dehydrogenase-like	92.59
KOG2539|consensus	491		92.59
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.59
COG1565	370	Uncharacterized conserved protein [Function unknow	92.56
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.19
PRK06223	307	malate dehydrogenase; Reviewed	92.13
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.1
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.93
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.85
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	91.67
COG2961	279	ComJ Protein involved in catabolism of external DN	91.61
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.58
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.54
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	91.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.23
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	91.21
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	91.18
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	91.16
PRK05225	487	ketol-acid reductoisomerase; Validated	91.01
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.97
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.66
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	90.63
COG4017	254	Uncharacterized protein conserved in archaea [Func	90.63
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	90.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.59
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	90.59
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	90.55
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	90.39
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.22
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.21
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	90.01
KOG2651|consensus	476		90.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	89.99
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.95
PLN02668	386	indole-3-acetate carboxyl methyltransferase	89.83
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.82
PRK10083	339	putative oxidoreductase; Provisional	89.81
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.62
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	89.62
PLN02586	360	probable cinnamyl alcohol dehydrogenase	89.48
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	89.2
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	89.18
PRK08213	259	gluconate 5-dehydrogenase; Provisional	89.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.86
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	88.84
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	88.74
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	88.63
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	88.6
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.54
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.51
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	88.43
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.43
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	88.36
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.34
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.22
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	88.19
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.1
KOG1209|consensus	289		87.75
PLN02494	477	adenosylhomocysteinase	87.71
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	87.59
PLN02514	357	cinnamyl-alcohol dehydrogenase	87.53
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	87.45
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	87.42
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.39
PRK10637	457	cysG siroheme synthase; Provisional	87.37
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	87.33
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.24
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	87.19
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	87.16
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	87.05
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	87.04
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	86.97
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	86.97
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.95
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	86.92
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	86.88
PRK15116	268	sulfur acceptor protein CsdL; Provisional	86.78
PLN02702	364	L-idonate 5-dehydrogenase	86.75
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	86.74
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	86.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	86.73
PRK07417	279	arogenate dehydrogenase; Reviewed	86.67
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	86.56
KOG3924|consensus	419		86.54
PRK05867	253	short chain dehydrogenase; Provisional	86.33
PRK07523	255	gluconate 5-dehydrogenase; Provisional	86.27
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.26
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.09
PRK15076	431	alpha-galactosidase; Provisional	86.04
PRK08324	681	short chain dehydrogenase; Validated	86.01
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	85.97
PRK07677	252	short chain dehydrogenase; Provisional	85.94
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	85.91
KOG0022|consensus	375		85.89
PRK06949	258	short chain dehydrogenase; Provisional	85.81
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	85.68
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	85.59
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	85.55
PTZ00082	321	L-lactate dehydrogenase; Provisional	85.47
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	85.47
PLN02178	375	cinnamyl-alcohol dehydrogenase	85.41
PRK07576	264	short chain dehydrogenase; Provisional	85.4
KOG0023|consensus	360		85.2
PRK07454	241	short chain dehydrogenase; Provisional	85.07
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	85.05
KOG1201|consensus	300		85.04
PRK13243	333	glyoxylate reductase; Reviewed	85.04
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	84.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	84.92
PRK10669	558	putative cation:proton antiport protein; Provision	84.79
PRK08267	260	short chain dehydrogenase; Provisional	84.55
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	84.5
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	84.44
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	84.32
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	84.1
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	84.01
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	83.99
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	83.9
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	83.86
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	83.67
PRK07097	265	gluconate 5-dehydrogenase; Provisional	83.66
PRK09496	453	trkA potassium transporter peripheral membrane com	83.63
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	83.63
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	83.45
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	83.42
PLN02928	347	oxidoreductase family protein	83.3
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	83.3
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	83.27
PRK06194	287	hypothetical protein; Provisional	83.25
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	83.23
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	83.19
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	83.07
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.97
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	82.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	82.8
KOG1198|consensus	347		82.73
PRK06436	303	glycerate dehydrogenase; Provisional	82.66
PTZ00075	476	Adenosylhomocysteinase; Provisional	82.63
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	82.61
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	82.54
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	82.33
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	82.14
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	81.88

>PLN02366 spermidine synthase

Probab=100.00  E-value=3.9e-33  Score=223.51  Aligned_cols=195  Identities=51%  Similarity=0.958  Sum_probs=175.3

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..+|+.|++||.+|++.++++.|++++.+++++.++++++||+||||.|+++.
T Consensus        28 ~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~r  107 (308)
T PLN02366         28 GEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLR  107 (308)
T ss_pred             CceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHH
Confidence            455789999999999999        777999999999999999999999999999998888889999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      ++++..+..+++.||+|+.+++.++++++.++.++++++++++++|+.+++... .++||+|++|.+.+..+...+++.+
T Consensus       108 ellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~e  187 (308)
T PLN02366        108 EIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKP  187 (308)
T ss_pred             HHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHH
Confidence            999876567999999999999999999876543456789999999999988764 5689999999998888878888999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhC-Cccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVF-PRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f-~~v~  196 (197)
                      |++.++++|+|||++++++.++|...+.++.+.++++++| +.|+
T Consensus       188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~  232 (308)
T PLN02366        188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN  232 (308)
T ss_pred             HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence            9999999999999999999999998899999999999999 4553

>PRK00811 spermidine synthase; Provisional

Probab=100.00  E-value=1.1e-32  Score=219.73  Aligned_cols=195  Identities=50%  Similarity=0.869  Sum_probs=173.9

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...++.++++|++++|+        +..+|+.|++||..|++..+++.|++++.+++++.++++++||+||||+|.++.
T Consensus        13 ~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~   92 (283)
T PRK00811         13 NYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLR   92 (283)
T ss_pred             ccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHH
Confidence            345678999999999999        667899999999999999999999999999998888899999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      ++++..+..++++||+|+++++.|+++++.+..+ +++++++++.+|+.+++....++||+|++|.+.+..+...+++.+
T Consensus        93 ~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~e  172 (283)
T PRK00811         93 EVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKE  172 (283)
T ss_pred             HHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHH
Confidence            9988756679999999999999999988654322 246799999999999887666799999999988887777888899


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +++.+++.|+|||+++++..+++...+.+..+.++++++|++|.
T Consensus       173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~  216 (283)
T PRK00811        173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR  216 (283)
T ss_pred             HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence            99999999999999999988888878899999999999999986

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=100.00  E-value=2.7e-32  Score=213.04  Aligned_cols=195  Identities=47%  Similarity=0.854  Sum_probs=175.1

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..||+.+++||..|+..++++.|++++.+++++.++++++||.||.|.|+.+.
T Consensus        13 ~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~   92 (246)
T PF01564_consen   13 GLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTAR   92 (246)
T ss_dssp             TEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHH
T ss_pred             CceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhh
Confidence            567899999999999999        778999999999999999999999999999999888999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC-ceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      ++++..+..++++||+||.+++.|+++++.....+++++++++.+|+..++....+ +||+|++|.+.+..+...+++.+
T Consensus        93 ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~e  172 (246)
T PF01564_consen   93 ELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTRE  172 (246)
T ss_dssp             HHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHH
T ss_pred             hhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHH
Confidence            99988767899999999999999999987543334678999999999999998767 99999999999888777799999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      |++.++++|+|||+++++..++......++.+.++++++||.|.
T Consensus       173 f~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~  216 (246)
T PF01564_consen  173 FYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVK  216 (246)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEE
T ss_pred             HHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceE
Confidence            99999999999999999998888888999999999999999774

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-31  Score=208.54  Aligned_cols=195  Identities=47%  Similarity=0.826  Sum_probs=180.2

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      +.+...++++++++++|.        +..||+.+++||..|++..+.+.|++|+.+.+++.++++++||.||.|.|+.++
T Consensus        13 ~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlR   92 (282)
T COG0421          13 GLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLR   92 (282)
T ss_pred             cccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHH
Confidence            456778899999999998        678999999999999999999999999999999989999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..+++.|||||+++++++++++.+..+..+++++++.+|+.+++.....+||+|++|.+.+.++...|++.+|
T Consensus        93 evlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eF  172 (282)
T COG0421          93 EVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEF  172 (282)
T ss_pred             HHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHH
Confidence            99999888999999999999999999999876444478999999999999998777999999999999888899999999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+++|+++.++.+++...+..+...+.++.+|+.+.
T Consensus       173 y~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~  215 (282)
T COG0421         173 YEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP  215 (282)
T ss_pred             HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccc
Confidence            9999999999999999998899888888999999999998765

>TIGR00417 speE spermidine synthase

Probab=99.98  E-value=7.1e-31  Score=208.23  Aligned_cols=195  Identities=49%  Similarity=0.900  Sum_probs=173.9

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..+|+.|++||..|+...+++.|++++.+++++.++++++||+||||+|.++.
T Consensus         9 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~   88 (270)
T TIGR00417         9 NFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLR   88 (270)
T ss_pred             CceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHH
Confidence            456789999999999999        667899999999999999999999999999988888888999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..+++++|+++++++.++++++.++..+..++++++.+|+.+++....++||+|++|.+.+..+...+++.++
T Consensus        89 ~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef  168 (270)
T TIGR00417        89 EVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEF  168 (270)
T ss_pred             HHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHH
Confidence            98887656799999999999999999886543334567899999999998877667999999999887777777888999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.+++.|+|||++++++.+++...+.++.+.++++++|++|+
T Consensus       169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~  211 (270)
T TIGR00417       169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITE  211 (270)
T ss_pred             HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeE
Confidence            9999999999999999988888888999999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02823 spermine synthase

Probab=99.98  E-value=1.5e-30  Score=210.48  Aligned_cols=195  Identities=36%  Similarity=0.617  Sum_probs=170.8

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...++.++++|++++|+        +..+|+.|++||..|+...+++.|++++.+.+++.++++++||.||+|.|..+.
T Consensus        40 ~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~r  119 (336)
T PLN02823         40 DLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAR  119 (336)
T ss_pred             CcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHH
Confidence            345678899999999999        667899999999999999999999999999998888889999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCC--CCCcccccH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPV--GPAESLFQA  151 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~--~~~~~l~~~  151 (197)
                      ++++..+..++++||+|+++++.|+++++.+...+.+++++++.+|++.++....++||+|++|.+.+.  ++...+++.
T Consensus       120 e~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~  199 (336)
T PLN02823        120 EVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTK  199 (336)
T ss_pred             HHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccH
Confidence            998876667999999999999999999876544456789999999999999876779999999987765  345578899


Q ss_pred             HHHH-HHHhhcCCCcEEEEEcCCC--CcChhHHHHHHHHHHhhCCccc
Q psy4592         152 SYFE-LMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       152 ~~~~-~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +|++ .+++.|+|||+++++..++  +...+.+..++++++++||+|.
T Consensus       200 eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~  247 (336)
T PLN02823        200 SFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVV  247 (336)
T ss_pred             HHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEE
Confidence            9998 9999999999999998663  3346778999999999999985

>PRK00536 speE spermidine synthase; Provisional

Probab=99.97  E-value=5.6e-30  Score=200.00  Aligned_cols=179  Identities=19%  Similarity=0.238  Sum_probs=159.0

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..||+.|++| ..+.+..+++.|++|+.|.+++.+++|++||.||+|.|+.++
T Consensus        10 ~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~R   88 (262)
T PRK00536         10 YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAH   88 (262)
T ss_pred             CceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHH
Confidence            355678999999999999        78899999999 555688999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..  .+++.||||+++++.++++++.+...+++|+++++..    ......++||+|++|..         ++++|
T Consensus        89 EvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~---------~~~~f  153 (262)
T PRK00536         89 QLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE---------PDIHK  153 (262)
T ss_pred             HHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEEEcCC---------CChHH
Confidence            999984  4999999999999999999998776788999999862    22223478999999963         34789


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||.++.++.++++..+.+..+.++++++|+.|+
T Consensus       154 y~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~  196 (262)
T PRK00536        154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAM  196 (262)
T ss_pred             HHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceE
Confidence            9999999999999999999999988999999999999999875

>PRK01581 speE spermidine synthase; Validated

Probab=99.97  E-value=7.4e-29  Score=200.06  Aligned_cols=187  Identities=27%  Similarity=0.372  Sum_probs=160.1

Q ss_pred             eeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC
Q psy4592           8 QVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP   79 (197)
Q Consensus         8 ~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~   79 (197)
                      .+.++|+++.|+        +..|  .|++||.+|++..+++.|++++.+.++..++++++||+||||+|..+.++++..
T Consensus        95 ~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~  172 (374)
T PRK01581         95 GEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE  172 (374)
T ss_pred             cccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC
Confidence            356899999999        4445  699999999999999999999999988888999999999999999999998876


Q ss_pred             CCccEEEEEcCHHHHHHHHhh--cCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC-CCcccccHHHHH
Q psy4592          80 SVESAYLVEIDNRVIEVSKKY--LPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG-PAESLFQASYFE  155 (197)
Q Consensus        80 ~~~~v~~ve~~~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~-~~~~l~~~~~~~  155 (197)
                      +..++++||+|+++++.|+++  ++.+. ..+++++++++++|+.+++....++||+|++|.+.+.. +...+++.+|++
T Consensus       173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~  252 (374)
T PRK01581        173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFA  252 (374)
T ss_pred             CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHH
Confidence            668999999999999999973  22221 23457899999999999988767799999999987654 356788899999


Q ss_pred             HHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         156 LMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       156 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      .+++.|+|||+++++..+++.....+..+.++++++|+.++
T Consensus       253 ~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        253 RIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             HHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence            99999999999999988887766777788999999998764

>PRK03612 spermidine synthase; Provisional

Probab=99.94  E-value=1.6e-25  Score=191.81  Aligned_cols=185  Identities=31%  Similarity=0.571  Sum_probs=156.1

Q ss_pred             eeeceeecCCCC--------CCC-CC--cEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHh
Q psy4592           8 QVEEPFYPSSSN--------RKE-FG--TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVL   76 (197)
Q Consensus         8 ~~~~~~~~~~~~--------~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~   76 (197)
                      ..++++++++|+        +.. +|  ..+++||..|.+..+++.|++++.+.++..++++++|||||||+|..+.+++
T Consensus       237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll  316 (521)
T PRK03612        237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREVL  316 (521)
T ss_pred             ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHH
Confidence            467788888888        223 35  7799999999888889999999988877777888999999999999999998


Q ss_pred             cCCCCccEEEEEcCHHHHHHHHhh--cCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC-cccccHH
Q psy4592          77 KHPSVESAYLVEIDNRVIEVSKKY--LPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA-ESLFQAS  152 (197)
Q Consensus        77 ~~~~~~~v~~ve~~~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~-~~l~~~~  152 (197)
                      +..+..++++||+|+++++.++++  ++.+. +.+++++++++++|+++++....++||+|++|++.+..+. .++++++
T Consensus       317 ~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~e  396 (521)
T PRK03612        317 KYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVE  396 (521)
T ss_pred             hCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHH
Confidence            865447999999999999999994  33221 1245679999999999988776689999999998776543 5688899


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-C
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-F  192 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f  192 (197)
                      +++.++++|||||+++++..+++...+.+..+.++++++ |
T Consensus       397 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        397 FYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             HHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            999999999999999999988888888899999999988 7

>KOG1562|consensus

Probab=99.93  E-value=3.1e-25  Score=171.78  Aligned_cols=196  Identities=52%  Similarity=0.895  Sum_probs=183.0

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+.++.++|.+|+.++|.        +.-||+.+++||..|.++++++.|++|+.++++..+++|++||.||.|.|++.+
T Consensus        58 g~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlr  137 (337)
T KOG1562|consen   58 GQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLR  137 (337)
T ss_pred             CceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCcccee
Confidence            788999999999999998        566999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      +..++-....+..+|++.++++..+++++.+..++.++++.+..||...++... .++||+|+.+...+.++...++...
T Consensus       138 evikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~  217 (337)
T KOG1562|consen  138 EVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKP  217 (337)
T ss_pred             eeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHH
Confidence            988876667999999999999999999998888889999999999999998875 6799999999999999888888899


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcccC
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC  197 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~  197 (197)
                      +++.+.+.||++|+.+++..+.|...+..++..+..+.+|+.+.+
T Consensus       218 ~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~y  262 (337)
T KOG1562|consen  218 YFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAY  262 (337)
T ss_pred             HHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccce
Confidence            999999999999999999999999999999999999999997753

>PRK04457 spermidine synthase; Provisional

Probab=99.89  E-value=1.5e-21  Score=154.00  Aligned_cols=163  Identities=25%  Similarity=0.360  Sum_probs=124.8

Q ss_pred             CcEEEEcC-eeeee----cc--chhhHHHHH-HhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH
Q psy4592          24 GTALILDG-IIQCT----EF--DEFSYSEMI-AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE   95 (197)
Q Consensus        24 ~~~l~~~~-~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~   95 (197)
                      .+.|.+++ ..|+.    .+  ..+.|.+++ ..+.  ..+++++|||||||+|.++..+++..+..++++||+||++++
T Consensus        27 ~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~--~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~  104 (262)
T PRK04457         27 VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLL--FNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIA  104 (262)
T ss_pred             EEEEEECCCcceeeeecCCcccccCHHHHHHHHHHh--cCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            35566665 34432    22  234565544 3332  235678999999999999999988777789999999999999


Q ss_pred             HHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592          96 VSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus        96 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      .|++++....   ..++++++++|+.+++....++||+|++|.+........+.+.+++++++++|+|||++++|...  
T Consensus       105 ~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~--  179 (262)
T PRK04457        105 VARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS--  179 (262)
T ss_pred             HHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC--
Confidence            9999986421   24689999999999887656789999999865545555677899999999999999999997533  


Q ss_pred             cChhHHHHHHHHHHhhCCc
Q psy4592         176 YSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       176 ~~~~~~~~~~~~~~~~f~~  194 (197)
                       ..+.+...++.++++|++
T Consensus       180 -~~~~~~~~l~~l~~~F~~  197 (262)
T PRK04457        180 -RDKRYDRYLERLESSFEG  197 (262)
T ss_pred             -CchhHHHHHHHHHHhcCC
Confidence             345567788899999986

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=99.87  E-value=2.1e-21  Score=154.55  Aligned_cols=182  Identities=34%  Similarity=0.543  Sum_probs=153.1

Q ss_pred             eceeecCCCC-------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCc
Q psy4592          10 EEPFYPSSSN-------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE   82 (197)
Q Consensus        10 ~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~   82 (197)
                      |+|++...|+       ++.....|++||-.|.+.++++.|++.+.+.+.-..+...+||.+|.|.|-..+++.+.....
T Consensus       235 deIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~  314 (508)
T COG4262         235 DEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVE  314 (508)
T ss_pred             CceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcc
Confidence            6789999988       333344589999999999999999998887766555677899999999999999999987678


Q ss_pred             cEEEEEcCHHHHHHHHhh--cCCC-CCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCC-CcccccHHHHHHHH
Q psy4592          83 SAYLVEIDNRVIEVSKKY--LPGM-AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGP-AESLFQASYFELMS  158 (197)
Q Consensus        83 ~v~~ve~~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~-~~~l~~~~~~~~~~  158 (197)
                      +|+-||+||+|++.++++  +... .+.+.+++++++..|+.+|++...+.||+||.|.++|..+ -.++++.+|+..++
T Consensus       315 qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~  394 (508)
T COG4262         315 QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLS  394 (508)
T ss_pred             eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence            999999999999999954  2222 1335678999999999999998888999999999987753 35688999999999


Q ss_pred             hhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         159 RALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       159 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +.|+++|.++++..++....+.+=.+.+++++.
T Consensus       395 ~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A  427 (508)
T COG4262         395 RHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA  427 (508)
T ss_pred             HhcCcCceEEEecCCCccCCceeeeehhHHHhC
Confidence            999999999999999888777777777777765

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.81  E-value=1.3e-18  Score=134.14  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=93.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||||.++..+++..+..+++++|+|++|++.+++.....    ...+++++.+||.+ ++.++++||+|.
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~-LPf~D~sFD~vt  124 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAEN-LPFPDNSFDAVT  124 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhh-CCCCCCccCEEE
Confidence            4678999999999999999998777789999999999999999987653    22349999999977 678889999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....+..++.    ++.|++++|+|||||++++...+
T Consensus       125 ~~fglrnv~d~----~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         125 ISFGLRNVTDI----DKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             eeehhhcCCCH----HHHHHHHHHhhcCCeEEEEEEcC
Confidence            98877776665    88999999999999988876533

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.80  E-value=1.2e-18  Score=131.36  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=133.3

Q ss_pred             EEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC
Q psy4592          26 ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA  105 (197)
Q Consensus        26 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~  105 (197)
                      .+-+||..|........+.+.+..+.....+++.+|||.|.|.|+.+.+.++++. .+|..||.||+++++|+-| +.. 
T Consensus       103 TiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lN-PwS-  179 (287)
T COG2521         103 TIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLN-PWS-  179 (287)
T ss_pred             eEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccC-CCC-
Confidence            4678888887666667777777777766567789999999999999999988853 5999999999999999876 322 


Q ss_pred             CCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc---ChhHH
Q psy4592         106 VGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY---SLDCV  181 (197)
Q Consensus       106 ~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~---~~~~~  181 (197)
                      .++-...++++.+|+.+.++. .+++||+|+.|||-.... ..|++++|+++++|+|||||.++-+++.|..   ..+..
T Consensus       180 r~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~A-geLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~  258 (287)
T COG2521         180 RELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLA-GELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLP  258 (287)
T ss_pred             ccccccccEEecccHHHHHhcCCccccceEeeCCCccchh-hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChh
Confidence            222335799999999999887 467899999999854432 3789999999999999999999999987753   35677


Q ss_pred             HHHHHHHHhh-CCcc
Q psy4592         182 GNTLQHCASV-FPRL  195 (197)
Q Consensus       182 ~~~~~~~~~~-f~~v  195 (197)
                      +.+.+.++++ |..|
T Consensus       259 ~gVa~RLr~vGF~~v  273 (287)
T COG2521         259 KGVAERLRRVGFEVV  273 (287)
T ss_pred             HHHHHHHHhcCceee
Confidence            7888888887 6644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.78  E-value=5.6e-19  Score=121.94  Aligned_cols=109  Identities=21%  Similarity=0.301  Sum_probs=84.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+|||||||+|.++.++++..+..+++++|++|++++.|++++...  . ..++++++++|+ .......++||+|++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--G-LSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--T-TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            46999999999999999998545589999999999999999988321  1 357999999998 3333345689999998


Q ss_pred             C-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 S-SDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      . ..+..... -...++++.+++.|+|||+++++.
T Consensus        78 ~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8 33222111 112678999999999999999864

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.76  E-value=4.4e-17  Score=125.80  Aligned_cols=127  Identities=19%  Similarity=0.271  Sum_probs=102.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I  134 (197)
                      +...+|||+|||+|.++..++++.+..++++||+++++.+.|+++....  .+ .++++++++|+.++.+.. ..+||+|
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l-~~ri~v~~~Di~~~~~~~~~~~fD~I  119 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PL-EERIQVIEADIKEFLKALVFASFDLI  119 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cc-hhceeEehhhHHHhhhcccccccCEE
Confidence            3468999999999999999998866689999999999999999997752  22 369999999999987764 3469999


Q ss_pred             EECCCCCCCCCc--------------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAE--------------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~~--------------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      ++|||.......              .+.-+++++.+.++|||||.+.+.     .+.+.+.+++..+++
T Consensus       120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-----~r~erl~ei~~~l~~  184 (248)
T COG4123         120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-----HRPERLAEIIELLKS  184 (248)
T ss_pred             EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-----ecHHHHHHHHHHHHh
Confidence            999996543221              011267999999999999999974     346778888887776

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.76  E-value=1.5e-18  Score=128.71  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=86.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...    .-.++++..+|..+.++  .++||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n----~~~~v~~~~~d~~~~~~--~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN----GLENVEVVQSDLFEALP--DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT----TCTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc----Ccccccccccccccccc--ccceeEEEE
Confidence            557999999999999999999887778999999999999999998753    12239999999765443  479999999


Q ss_pred             CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |||.+...... ....++++++.+.|||||.+++....
T Consensus       105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            99976664311 12378999999999999999776544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.73  E-value=1e-17  Score=129.97  Aligned_cols=123  Identities=20%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||||.++..+++. .+..+++++|++++|++.|++.....    ...+++++++|+.+ ++..+++||+|
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----~~~~i~~v~~da~~-lp~~d~sfD~v  120 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----GLQNIEFVQGDAED-LPFPDNSFDAV  120 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT----T--SEEEEE-BTTB---S-TT-EEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh----CCCCeeEEEcCHHH-hcCCCCceeEE
Confidence            56789999999999999998875 44579999999999999999887542    23489999999987 56667899999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC  188 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  188 (197)
                      ++....+..++.    ...+++++|+|||||.+++...+ .+....++.++..+
T Consensus       121 ~~~fglrn~~d~----~~~l~E~~RVLkPGG~l~ile~~-~p~~~~~~~~~~~y  169 (233)
T PF01209_consen  121 TCSFGLRNFPDR----ERALREMYRVLKPGGRLVILEFS-KPRNPLLRALYKFY  169 (233)
T ss_dssp             EEES-GGG-SSH----HHHHHHHHHHEEEEEEEEEEEEE-B-SSHHHHHHHHH-
T ss_pred             EHHhhHHhhCCH----HHHHHHHHHHcCCCeEEEEeecc-CCCCchhhceeeee
Confidence            998866655554    78999999999999998875422 12234555555443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.73  E-value=1.9e-16  Score=120.58  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=94.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I  134 (197)
                      ++.+|||+|||+|.++..+++..+..+++++|+++++++.+++++...    ..++++++++|+.+.++  ...++||.|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~D~V  115 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLLCGDAVEVLLDMFPDGSLDRI  115 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----CCCCEEEEecCHHHHHHHHcCccccceE
Confidence            557999999999999999887766679999999999999999887542    22579999999933344  235789999


Q ss_pred             EECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++.+.++...    .....+.+++++.++|||||.+++.+..    ......+.+.+++
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~  171 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA  171 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence            99876654321    1122378999999999999999997544    3455555555544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.73  E-value=2.2e-16  Score=119.57  Aligned_cols=126  Identities=14%  Similarity=0.236  Sum_probs=97.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I  134 (197)
                      ...++||||||+|.++..+++..+...++++|+++.+++.|+++....    ...+++++++|+.+.+..  ..+++|.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~----~l~ni~~i~~d~~~~~~~~~~~~~~d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL----GLKNLHVLCGDANELLDKFFPDGSLSKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh----CCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence            345999999999999999998877789999999999999998876542    224899999999886543  24589999


Q ss_pred             EECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++.+.++...    ..+..+++++.+.++|||||.+++.+..    ......+.+.+.+
T Consensus        92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~~~~~~~  147 (194)
T TIGR00091        92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDMLKVLSE  147 (194)
T ss_pred             EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence            99998877432    2344578999999999999999987644    2334444444443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.72  E-value=3e-17  Score=122.61  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=98.2

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .+++.+++.   ..+.+|.|+|||+|..+..+..+.+...++|+|.|++|++.|++..         +++++..+|++++
T Consensus        20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w   87 (257)
T COG4106          20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW   87 (257)
T ss_pred             HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence            345555543   5678999999999999999999999999999999999999998764         5789999999886


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      -+.  .+.|+|++|..++|.++.    .++|..+...|.|||++.+++...+
T Consensus        88 ~p~--~~~dllfaNAvlqWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~  133 (257)
T COG4106          88 KPE--QPTDLLFANAVLQWLPDH----PELLPRLVSQLAPGGVLAVQMPDNL  133 (257)
T ss_pred             CCC--Cccchhhhhhhhhhcccc----HHHHHHHHHhhCCCceEEEECCCcc
Confidence            543  679999999999999886    7899999999999999999985543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.72  E-value=1.9e-17  Score=120.64  Aligned_cols=108  Identities=23%  Similarity=0.326  Sum_probs=87.7

Q ss_pred             CCCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I  134 (197)
                      +..+|||+|||+|.++..++ +..+..+++++|+++++++.|++.+...    ..++++++++|+.+ ++.. .++||+|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----~~~ni~~~~~d~~~-l~~~~~~~~D~I   77 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----GLDNIEFIQGDIED-LPQELEEKFDII   77 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----TSTTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----cccccceEEeehhc-cccccCCCeeEE
Confidence            46799999999999999999 5566689999999999999999976542    23489999999988 5521 2789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++.+.++..+.    ..+++++.+.|+++|.+++....
T Consensus        78 ~~~~~l~~~~~~----~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDP----EKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHH----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEcCchhhccCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence            999877555544    67999999999999999986533

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.70  E-value=8.3e-17  Score=132.35  Aligned_cols=114  Identities=12%  Similarity=0.135  Sum_probs=88.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      ..+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++...... ...++++..+|+.+..  ..++||+|++|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence            35999999999999999998877789999999999999999987542100 1237899999975533  23589999999


Q ss_pred             CCCCCCCCc-ccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         138 SSDPVGPAE-SLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       138 ~~~~~~~~~-~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ||+|..... .-...++++.++++|+|||.+++..+..
T Consensus       306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~  343 (378)
T PRK15001        306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  343 (378)
T ss_pred             cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence            998765311 0112578999999999999999986554

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.69  E-value=1.2e-16  Score=111.04  Aligned_cols=109  Identities=28%  Similarity=0.433  Sum_probs=85.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEEC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITD  137 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~  137 (197)
                      .+|||+|||+|.++..+++.. ..+++++|++|..++.++.+++..  + ...+++++++|+.+.... ..++||+|++|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--G-LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--T-TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--c-CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            589999999999999988876 589999999999999999988753  1 135799999999887633 46899999999


Q ss_pred             CCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGP----AESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|.....    ...-....+++++.++|+|||.+++.+
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            9875321    111123689999999999999998864

...

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.69  E-value=2.1e-16  Score=129.04  Aligned_cols=118  Identities=22%  Similarity=0.210  Sum_probs=91.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...     ....+++.+|..+.   ..++||+|++
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l~~~~~~~D~~~~---~~~~fDlIvs  267 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GLEGEVFASNVFSD---IKGRFDMIIS  267 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEcccccc---cCCCccEEEE
Confidence            345899999999999999998777679999999999999999987652     22456777886542   2468999999


Q ss_pred             CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHH
Q psy4592         137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG  182 (197)
Q Consensus       137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~  182 (197)
                      |+|+|...... -....+++++.+.|||||.+++..+....+.+.++
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~  314 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD  314 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence            99988753321 11378999999999999999998876555444444

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.4e-16  Score=124.16  Aligned_cols=122  Identities=21%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||+|||.|.++..+++..|..+++.+|+|...++.|++++..+    ...+..+..+|..+..   .++||+|++
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N----~~~~~~v~~s~~~~~v---~~kfd~Iis  230 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN----GVENTEVWASNLYEPV---EGKFDLIIS  230 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc----CCCccEEEEecccccc---cccccEEEe
Confidence            345999999999999999999988899999999999999999998752    2223367778765433   248999999


Q ss_pred             CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      |||+|.+..-. -...+++..+.+.|++||.|++..+........+++++
T Consensus       231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F  280 (300)
T COG2813         231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF  280 (300)
T ss_pred             CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence            99998874321 11258999999999999999998875444444444443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.69  E-value=5.1e-17  Score=108.31  Aligned_cols=95  Identities=23%  Similarity=0.334  Sum_probs=78.3

Q ss_pred             EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCC
Q psy4592          62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP  141 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~  141 (197)
                      ||+|||+|..+..+.+. +..+++++|+++++++.+++....       .++++..+|+.+. +.++++||+|++....+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC-cccccccccccccccee
Confidence            89999999999999988 558999999999999999998753       4567999998775 66678999999988776


Q ss_pred             CCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         142 VGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       142 ~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +..+.    ..+++++.|+|||||++++
T Consensus        72 ~~~~~----~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HLEDP----EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GSSHH----HHHHHHHHHHEEEEEEEEE
T ss_pred             eccCH----HHHHHHHHHHcCcCeEEeC
Confidence            66433    7899999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=2.2e-16  Score=124.41  Aligned_cols=99  Identities=15%  Similarity=0.267  Sum_probs=84.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..+..+++++|+++.|++.|++.           +++++++|+.++.  ..++||+|+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~   94 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV   94 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence            566899999999999999998876667999999999999998652           4678899987652  246899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++...++.++.    ..++++++++|||||.+++..
T Consensus        95 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         95 SNAALQWVPEH----ADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             EehhhhhCCCH----HHHHHHHHHhCCCCcEEEEEc
Confidence            99988887664    789999999999999999875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.69  E-value=4e-16  Score=122.98  Aligned_cols=107  Identities=20%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..  .+++++|+++++++.|+++....  + ..++++++++|+.+..+...++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g-~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--G-VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--C-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            456799999999999999998764  69999999999999999887542  1 135789999999876444467899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++..++    ..+++++.++|||||.+++..
T Consensus       118 ~~~vl~~~~~~----~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        118 FHAVLEWVADP----KSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             ehhHHHhhCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence            98877666554    678999999999999998754

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.68  E-value=3.2e-16  Score=123.88  Aligned_cols=110  Identities=17%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++. .+..+++++|++++|++.|+++.+..... ..++++++++|+.+ ++..+++||+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~-lp~~~~sfD~V  149 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATD-LPFDDCYFDAI  149 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEccccc-CCCCCCCEeEE
Confidence            45679999999999998888765 34469999999999999998764311000 23579999999876 35556789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....++.+++    ..++++++++|||||.+++..
T Consensus       150 ~~~~~l~~~~d~----~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        150 TMGYGLRNVVDR----LKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEecccccCCCH----HHHHHHHHHHcCcCcEEEEEE
Confidence            998877776654    789999999999999988764

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.68  E-value=1.2e-15  Score=112.50  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++.+++|||||||+++.+++...+..++++||-+++.++..++|..++    .-+|++++.+|+.+.++... ++|.|
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L~~~~-~~dai  106 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEALPDLP-SPDAI  106 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhhcCCC-CCCEE
Confidence            45667999999999999999998788899999999999999999998775    35799999999999887643 89999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      |....    .  .  -++.++.+...|||||+++.|...    .+.+..+++.+++.
T Consensus       107 FIGGg----~--~--i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~  151 (187)
T COG2242         107 FIGGG----G--N--IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL  151 (187)
T ss_pred             EECCC----C--C--HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence            98773    1  1  178999999999999999998755    57777777777765

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.68  E-value=3.2e-16  Score=119.41  Aligned_cols=106  Identities=21%  Similarity=0.229  Sum_probs=89.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||.|.++..+++.+  ..|+++|+++++++.|+.....     +.-.+++.+..+.+.... .++||+|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-----~gv~i~y~~~~~edl~~~-~~~FDvV~c  130 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-----SGVNIDYRQATVEDLASA-GGQFDVVTC  130 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-----ccccccchhhhHHHHHhc-CCCccEEEE
Confidence            56799999999999999999886  8999999999999999988664     334567888888775543 489999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      .-...+-+++    +.+++.+.+++||||.+++.+.+.
T Consensus       131 mEVlEHv~dp----~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         131 MEVLEHVPDP----ESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             hhHHHccCCH----HHHHHHHHHHcCCCcEEEEecccc
Confidence            8877776676    679999999999999999987653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.68  E-value=4.4e-16  Score=122.18  Aligned_cols=108  Identities=13%  Similarity=0.184  Sum_probs=84.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhc--CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLK--HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +++.+|||+|||+|..+..+++  ..+..+++++|+++.|++.|++++...+   ...+++++++|+.+. +  .+.+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~-~--~~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI-A--IENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhC-C--CCCCCE
Confidence            4567999999999999888776  3456899999999999999999875421   234799999998653 2  245999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++...++.++..  ...++++++++|||||.+++..
T Consensus       129 vv~~~~l~~l~~~~--~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        129 VVLNFTLQFLEPSE--RQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             EehhhHHHhCCHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence            99988766654322  2679999999999999999864

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.68  E-value=1.7e-15  Score=125.83  Aligned_cols=127  Identities=20%  Similarity=0.255  Sum_probs=96.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++++|||+|||+|+++..++.. +..+++++|+++.+++.|++++...  +++..+++++++|+.+++..   ..++||
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N--gl~~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            35679999999999998876654 3469999999999999999998752  22224799999999998754   246899


Q ss_pred             EEEECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         133 VIITDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      +|++|||........+.     -.++++.+.++|+|||.+++.++++....+.+.+++
T Consensus       296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v  353 (396)
T PRK15128        296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII  353 (396)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence            99999986443221111     145667789999999999998888777666666555

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.68  E-value=1.3e-15  Score=118.24  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++. .+..+++++|+++++++.+++++...    ..++++++++|+.+. +...++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~V  118 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMEL-PFDDNSFDYV  118 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcC-CCCCCCccEE
Confidence            45679999999999999988865 34579999999999999999887542    235799999998763 3345789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++...++.++.    .++++++.++|+|||.+++..
T Consensus       119 ~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       119 TIGFGLRNVPDY----MQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEecccccCCCH----HHHHHHHHHHcCcCeEEEEEE
Confidence            998776665544    679999999999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.67  E-value=9.2e-16  Score=114.82  Aligned_cols=101  Identities=20%  Similarity=0.269  Sum_probs=81.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..++...+..+++++|+++++++.++++....    ..++++++++|+.+. . ..++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----~~~~i~~i~~d~~~~-~-~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----GLNNVEIVNGRAEDF-Q-HEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----CCCCeEEEecchhhc-c-ccCCccEEEe
Confidence            367999999999999988876666679999999999999998876542    224699999999874 2 2468999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +. .   .+.    +.+++.+.++|+|||.+++..
T Consensus       116 ~~-~---~~~----~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       116 RA-L---ASL----NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             hh-h---hCH----HHHHHHHHHhcCCCCEEEEEc
Confidence            76 1   111    568899999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.67  E-value=6e-16  Score=122.07  Aligned_cols=102  Identities=20%  Similarity=0.288  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++         ++++++.+|+.++.  ..++||+|+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~   98 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF   98 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence            4567999999999999999887766689999999999999998864         35789999987643  246899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++...++.++.    ..+++++.++|||||.+++...
T Consensus        99 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         99 ANASLQWLPDH----LELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             EccChhhCCCH----HHHHHHHHHhcCCCcEEEEECC
Confidence            99988877654    6899999999999999999753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.67  E-value=6.2e-16  Score=108.29  Aligned_cols=105  Identities=18%  Similarity=0.274  Sum_probs=83.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+..+|||+|||+|.++..+++..+..+++++|+++.+++.++++....    ..++++++.+|+.+.+....++||+|+
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhhcCCCCEEE
Confidence            3456999999999999999988766689999999999999999886542    234788998987653333346899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.....     .  ..++++.+.+.|||||.+++..
T Consensus        94 ~~~~~~-----~--~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        94 IGGSGG-----L--LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ECCcch-----h--HHHHHHHHHHHcCCCCEEEEEe
Confidence            976321     1  1579999999999999999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.67  E-value=7.1e-16  Score=115.81  Aligned_cols=104  Identities=23%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|..+..+++..+..+++++|+++++++.|+++....    ..++++++++|+.+. .. .++||+|+
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~----~l~~i~~~~~d~~~~-~~-~~~fDlV~  117 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL----GLKNVTVVHGRAEEF-GQ-EEKFDVVT  117 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc----CCCCEEEEeccHhhC-CC-CCCccEEE
Confidence            3468999999999999998887556689999999999999999987653    223599999998774 33 56899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++..    .+.    +.+++.+++.|||||.+++....
T Consensus       118 ~~~~----~~~----~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        118 SRAV----ASL----SDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             Eccc----cCH----HHHHHHHHHhcCCCeEEEEEeCC
Confidence            9752    111    67999999999999999987533

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.66  E-value=3.6e-15  Score=123.20  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..+..+++++|+|+++++.|+++....     +.+++++++|+.+......++||+|++
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~~~~FDLIVS  325 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-----GARVEFAHGSWFDTDMPSEGKWDIIVS  325 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEcchhccccccCCCccEEEE
Confidence            346999999999999998887666689999999999999999997652     347999999976532112357999999


Q ss_pred             CCCCCCCCCc-------------cc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAE-------------SL--------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~-------------~l--------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |||.......             .+        .-..+++.+.+.|+|||.+++..+.
T Consensus       326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            9985221100             01        1136777888999999999886533

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=9.6e-16  Score=120.42  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++++|||||||+|+++..+++..+ .+|+++++|+++.+.+++.+...  ++. .++++...|.+++    .++||.|+
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~--gl~-~~v~v~l~d~rd~----~e~fDrIv  142 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAAR--GLE-DNVEVRLQDYRDF----EEPFDRIV  142 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHc--CCC-cccEEEecccccc----ccccceee
Confidence            6789999999999999999998874 79999999999999999977653  222 4899999996654    34599999


Q ss_pred             ECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +-... |.+....   +.||+.+++.|+|||.+++.+..
T Consensus       143 SvgmfEhvg~~~~---~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         143 SVGMFEHVGKENY---DDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             ehhhHHHhCcccH---HHHHHHHHhhcCCCceEEEEEec
Confidence            96654 4454332   88999999999999999998744

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.66  E-value=4.9e-15  Score=116.17  Aligned_cols=110  Identities=21%  Similarity=0.294  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++....    ..++++++++|+.+..  ..++||+|+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~Vi  159 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----GLDNVTFLQSDWFEPL--PGGKFDLIV  159 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhccC--cCCceeEEE
Confidence            3456999999999999999998766679999999999999999987542    2246999999987633  247899999


Q ss_pred             ECCCCCCCCCcc-----cc-----------------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAES-----LF-----------------QASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~-----l~-----------------~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|........     ..                 -..+++.+.+.|+|||.+++..
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            999864321110     00                 1357889999999999999864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02244 tocopherol O-methyltransferase

Probab=99.66  E-value=7.2e-16  Score=126.17  Aligned_cols=107  Identities=18%  Similarity=0.320  Sum_probs=86.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ .++++||+++.+++.++++....  + ..++++++++|+.+ ++..+++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~--g-~~~~v~~~~~D~~~-~~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQ--G-LSDKVSFQVADALN-QPFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEEcCccc-CCCCCCCccEEE
Confidence            4567999999999999999887653 79999999999999998875431  1 23579999999876 344467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus       192 s~~~~~h~~d~----~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        192 SMESGEHMPDK----RKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             ECCchhccCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence            98776665554    689999999999999999865

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.66  E-value=3.8e-15  Score=122.28  Aligned_cols=114  Identities=17%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      ....+||||||+|.++..+++..+...++|+|+++.+++.+.++....    +..++.++.+|+...+.. ..+++|.|+
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~----gL~NV~~i~~DA~~ll~~~~~~s~D~I~  197 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL----NLKNLLIINYDARLLLELLPSNSVEKIF  197 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHhhhhCCCCceeEEE
Confidence            445999999999999999998888889999999999999988876542    235799999999876433 467999999


Q ss_pred             ECCCCCCCC--CcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         136 TDSSDPVGP--AESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       136 ~~~~~~~~~--~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ++.+.+|..  +.++..+.+++.++++|+|||.+.+.+...
T Consensus       198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            999988852  234556899999999999999999987653

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.66  E-value=2.4e-15  Score=113.25  Aligned_cols=118  Identities=17%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++....    ...+++++.+|+...+   .++||+|+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----~~~~i~~~~~d~~~~~---~~~~D~v~  102 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----GCGNIDIIPGEAPIEL---PGKADAIF  102 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCeEEEecCchhhc---CcCCCEEE
Confidence            4567999999999999999888766689999999999999999887543    2246899999974322   35799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++....   .    ...+++.+.+.|+|||++++....    .+...++.+.+++.
T Consensus       103 ~~~~~~---~----~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~~l~~~  147 (187)
T PRK08287        103 IGGSGG---N----LTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALAHLEKC  147 (187)
T ss_pred             ECCCcc---C----HHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHHHHHHC
Confidence            876421   1    166889999999999999885322    23445555555543

>KOG1540|consensus

Probab=99.65  E-value=3.6e-15  Score=114.08  Aligned_cols=110  Identities=21%  Similarity=0.243  Sum_probs=87.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC------ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV------ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~------~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (197)
                      .+..++||++||||.++..+++..+.      .+|+++||+|.|++.++++..+. .-...+++.++.+||++ ++.+++
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~-LpFdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAED-LPFDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCccc-CCCCCC
Confidence            45689999999999999998876443      79999999999999999886331 11234569999999987 567789


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +||+.++..-....++.    ++.+++++|+|||||+|.+-.
T Consensus       177 s~D~yTiafGIRN~th~----~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVTHI----QKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             cceeEEEecceecCCCH----HHHHHHHHHhcCCCcEEEEEE
Confidence            99999987654444444    789999999999999887643

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.64  E-value=5.7e-15  Score=112.16  Aligned_cols=122  Identities=18%  Similarity=0.285  Sum_probs=93.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.++++....  ++ ..+++++.+|+.+.++...++||+|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~-~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GV-LNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CC-CCCeEEEEechhhhHhhcCCCCCEE
Confidence            46679999999999999988764 34469999999999999999887642  11 3578999999987666545689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +++...   ..    ...+++.+.++|+|||++++...    ..+.+..+...+++.
T Consensus       116 ~~~~~~---~~----~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~  161 (198)
T PRK00377        116 FIGGGS---EK----LKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALENI  161 (198)
T ss_pred             EECCCc---cc----HHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHHc
Confidence            986521   11    16789999999999999998543    346667777777554

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.64  E-value=2.1e-15  Score=121.96  Aligned_cols=107  Identities=10%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||||||+|.++..+++..  .++++||+++++++.|+++....  + ...+++++++|+.+. +...++||+|++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~--~-~~~~i~~~~~dae~l-~~~~~~FD~Vi~  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD--P-VTSTIEYLCTTAEKL-ADEGRKFDAVLS  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--C-cccceeEEecCHHHh-hhccCCCCEEEE
Confidence            34699999999999998887653  69999999999999999875431  1 124799999998774 334578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ....++..++    ..+++++.++|||||.+++....
T Consensus       205 ~~vLeHv~d~----~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        205 LEVIEHVANP----AEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             hhHHHhcCCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence            8777666555    78999999999999999987643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.64  E-value=3.3e-15  Score=118.20  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=82.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|..+..+++..+ .+++++|+++++++.|+++...      .+++.+.++|+.+ .+...++||+|+
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~-~~~~~~~FD~V~  122 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILK-KDFPENTFDMIY  122 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCccc-CCCCCCCeEEEE
Confidence            5667999999999999888876543 6999999999999999987653      3579999999764 233457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+...  ...++++++++|||||.+++..
T Consensus       123 s~~~l~h~~~~d--~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        123 SRDAILHLSYAD--KKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             EhhhHHhCCHHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence            965433332111  2679999999999999999864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.62  E-value=5.8e-15  Score=110.36  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=82.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+.+..+  +++++|+++++++.+++++..     ...+++++.+|+.+..   .++||+|+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~---~~~fD~Vi   87 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL-----NNVGLDVVMTDLFKGV---RGKFDVIL   87 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEccccccc---CCcccEEE
Confidence            3457899999999999999887753  899999999999999998764     2246888999975532   35899999


Q ss_pred             ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++|.+.....                 ......+++++.++|+|||.+++..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            99986543211                 0012568999999999999998865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.62  E-value=7.9e-15  Score=115.26  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=82.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+.+..  .+++++|+++++++.++++..         ...++++|+.+ ++...++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~-~~~~~~~fD~V~  108 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIES-LPLATATFDLAW  108 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCccc-CcCCCCcEEEEE
Confidence            345799999999999988887653  799999999999999988653         24578889865 344457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++.+.++.++.    ..++.++.++|+|||.+++...
T Consensus       109 s~~~l~~~~d~----~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        109 SNLAVQWCGNL----STALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             ECchhhhcCCH----HHHHHHHHHHcCCCeEEEEEeC
Confidence            99888776654    7899999999999999998753

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.62  E-value=1.4e-14  Score=119.21  Aligned_cols=126  Identities=23%  Similarity=0.327  Sum_probs=103.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~  133 (197)
                      .+++||++.|.||+++.+++..+ ..++|.||+|...++.|++|+..  +++...++.++++|+.+++...   +.+||+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~L--Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAEL--NGLDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHh--cCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            48899999999999999988775 35999999999999999999876  4555678999999999999864   459999


Q ss_pred             EEECCCCCCCCCccccc-----HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         134 IITDSSDPVGPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~-----~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      |++|||.........++     ..++..+.++|+|||.+++.+++.....+.+.+++
T Consensus       294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i  350 (393)
T COG1092         294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII  350 (393)
T ss_pred             EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHH
Confidence            99999975543322221     45778899999999999999988877777666655

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.61  E-value=1.5e-14  Score=117.48  Aligned_cols=102  Identities=21%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..+..+++++|+++++++.|+++..       ..+++++.+|+.+ ++...++||+|++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~-lp~~~~sFDvVIs  184 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAED-LPFPTDYADRYVS  184 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHh-CCCCCCceeEEEE
Confidence            4579999999999998888776555799999999999999998753       2468899999876 3444578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +...+..++.    +..+++++++|||||.+++.
T Consensus       185 ~~~L~~~~d~----~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        185 AGSIEYWPDP----QRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             cChhhhCCCH----HHHHHHHHHhcCCCcEEEEE
Confidence            8877666554    67899999999999998875

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.61  E-value=3.3e-15  Score=113.39  Aligned_cols=103  Identities=18%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|..+..+++..  .+++++|+++++++.+++.....    ...++++.++|+.+. +. .++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~-~~-~~~fD~I~~  101 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE----NLDNLHTAVVDLNNL-TF-DGEYDFILS  101 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc----CCCcceEEecChhhC-Cc-CCCcCEEEE
Confidence            45799999999999999998763  69999999999999998876542    124588888997653 22 467999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ....++.+...  ...+++++.++|+|||++++
T Consensus       102 ~~~~~~~~~~~--~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        102 TVVLMFLEAKT--IPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             ecchhhCCHHH--HHHHHHHHHHHcCCCcEEEE
Confidence            88766543221  26899999999999998654

>TIGR00740 methyltransferase, putative

Probab=99.61  E-value=1.7e-14  Score=112.61  Aligned_cols=108  Identities=11%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .++.+|||+|||+|..+..+++.  .+..+++++|++++|++.|++++....   ...+++++++|+.+. +  .+++|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~-~--~~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV-E--IKNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC-C--CCCCCE
Confidence            45569999999999999888764  356899999999999999998865321   234789999998653 2  246899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |++....++.++..  ...++++++++|+|||.+++..
T Consensus       126 v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       126 VILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             EeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEee
Confidence            99888776654322  2679999999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.61  E-value=6.2e-16  Score=105.00  Aligned_cols=97  Identities=24%  Similarity=0.386  Sum_probs=73.2

Q ss_pred             EEEEeCCchHhHHHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          61 VLIVGGGDGGVAREVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      |||+|||+|..+..+.+..   +..+++++|+++++++.++++...     ...+++++++|+.++ +...++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~~~~~~~~D~~~l-~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGPKVRFVQADARDL-PFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCCceEEEECCHhHC-cccCCCeeEEEEc
Confidence            7999999999999988653   337999999999999999998754     234899999999884 4456799999994


Q ss_pred             -CCCCCCCCcccccHHHHHHHHhhcCCCc
Q psy4592         138 -SSDPVGPAESLFQASYFELMSRALRPGG  165 (197)
Q Consensus       138 -~~~~~~~~~~l~~~~~~~~~~~~LkpgG  165 (197)
                       ...++..+..  ...+++++.++|||||
T Consensus        75 ~~~~~~~~~~~--~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEE--LEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGGGSSHHH--HHHHHHHHHHTEEEEE
T ss_pred             CCccCCCCHHH--HHHHHHHHHHHhCCCC
Confidence             4243333322  2789999999999998

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.61  E-value=4.3e-14  Score=112.41  Aligned_cols=110  Identities=24%  Similarity=0.355  Sum_probs=84.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...    ...+++++.+|+.+...  .++||+|+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv  180 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV  180 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence            3557999999999999999988777789999999999999999987611    23579999999754322  36899999


Q ss_pred             ECCCCCCCCC--------------cccc--------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPA--------------ESLF--------QASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~--------------~~l~--------~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|......              ..+.        -..+++++.+.|+|||.+++..
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            9998532110              0010        1457888889999999999965

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.61  E-value=5.7e-15  Score=111.92  Aligned_cols=103  Identities=17%  Similarity=0.073  Sum_probs=78.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|..+..+++..  .+|+++|+++.+++.+++.....     +-++++...|+... +. .++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~-~~-~~~fD~I~~  100 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAA-AL-NEDYDFIFS  100 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhc-cc-cCCCCEEEE
Confidence            45799999999999999998763  69999999999999998876431     22367777776432 22 357999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ....++.+...  ...++++++++|+|||++++.
T Consensus       101 ~~~~~~~~~~~--~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       101 TVVFMFLQAGR--VPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ecccccCCHHH--HHHHHHHHHHHhCCCcEEEEE
Confidence            88766553321  267999999999999985544

Part of a tellurite-reducing operon tehA and tehB

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.61  E-value=8.4e-15  Score=117.03  Aligned_cols=112  Identities=18%  Similarity=0.275  Sum_probs=86.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..+..+++++|+|+.+++.|+++....  ++ ..+++++++|+.+.++  .++||+|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~-~~~i~~~~~D~~~~~~--~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GL-EDRVTLIQSDLFAALP--GRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEECchhhccC--CCCccEEEE
Confidence            456999999999999999998766689999999999999999987642  11 2479999999865442  357999999


Q ss_pred             CCCCCCCCC-----------c--cc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPA-----------E--SL--------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~-----------~--~l--------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |||......           +  .+        ....+++.+.+.|+|||++++..+.
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            998532110           0  00        1146788999999999999997653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.60  E-value=3.7e-14  Score=113.43  Aligned_cols=145  Identities=17%  Similarity=0.238  Sum_probs=97.2

Q ss_pred             CCCcEEEEcCeeeeeccchhh-HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          22 EFGTALILDGIIQCTEFDEFS-YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      .+|..+.++..+-...+.... ....+..+.  ......+|||+|||+|.++..++...+..+++++|+++++++.|+++
T Consensus        80 f~g~~f~v~~~vliPr~ete~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n  157 (284)
T TIGR00536        80 FYGLEFFVNEHVLIPRPETEELVEKALASLI--SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN  157 (284)
T ss_pred             EcCeEEEECCCCcCCCCccHHHHHHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            356666666444333332222 222222221  11222699999999999999999877768999999999999999998


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC-------------ccc--------ccHHHHHHHHh
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA-------------ESL--------FQASYFELMSR  159 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~-------------~~l--------~~~~~~~~~~~  159 (197)
                      ....  ++ ..+++++.+|+.+.++  ..+||+|++|||......             ..+        ....+++++.+
T Consensus       158 ~~~~--~~-~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~  232 (284)
T TIGR00536       158 AEKN--QL-EHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPD  232 (284)
T ss_pred             HHHc--CC-CCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHH
Confidence            7642  11 2359999999765332  247999999987522110             000        12468889999


Q ss_pred             hcCCCcEEEEEcCC
Q psy4592         160 ALRPGGIVCSQAGT  173 (197)
Q Consensus       160 ~LkpgG~l~~~~~~  173 (197)
                      .|+|||++++..+.
T Consensus       233 ~L~~gG~l~~e~g~  246 (284)
T TIGR00536       233 YLKPNGFLVCEIGN  246 (284)
T ss_pred             hccCCCEEEEEECc
Confidence            99999999997644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.60  E-value=1.3e-14  Score=112.63  Aligned_cols=103  Identities=21%  Similarity=0.345  Sum_probs=86.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..+..+++++|+++.+++.+++...        +++.++.+|+.+. +...++||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-~~~~~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKL-PLEDSSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhC-CCCCCceeEEE
Confidence            34579999999999999999887776789999999999999988753        3688999998763 33457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++...++..+.    ..+++++.++|+|||.+++..
T Consensus       104 ~~~~l~~~~~~----~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       104 SNLALQWCDDL----SQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             EhhhhhhccCH----HHHHHHHHHHcCCCcEEEEEe
Confidence            99887776554    679999999999999999865

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.60  E-value=5e-15  Score=117.39  Aligned_cols=110  Identities=25%  Similarity=0.318  Sum_probs=79.6

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      +..+++.+|||||||.|+++..+++..+ +++++|.+|++..+.+++.+...  ++ ..++++..+|.++..    .+||
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~--gl-~~~v~v~~~D~~~~~----~~fD  129 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREA--GL-EDRVEVRLQDYRDLP----GKFD  129 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TS-SSTEEEEES-GGG-------S-S
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEEeeccccC----CCCC
Confidence            3346778999999999999999998864 79999999999999999887653  22 358999999977632    3899


Q ss_pred             EEEECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .|++-... |.+...   -+.+++++.+.|||||.+++....
T Consensus       130 ~IvSi~~~Ehvg~~~---~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  130 RIVSIEMFEHVGRKN---YPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             EEEEESEGGGTCGGG---HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             EEEEEechhhcChhH---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            99996544 443222   278999999999999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.60  E-value=1.1e-16  Score=108.15  Aligned_cols=98  Identities=19%  Similarity=0.295  Sum_probs=61.6

Q ss_pred             EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCC
Q psy4592          62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSD  140 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~  140 (197)
                      ||||||+|.++..+....+..+++++|+|+.+++.+++++...    ...+......+..+..... .++||+|++....
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL----GNDNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC----T---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCcceeEEEeecCChhhcccccccceehhhhhH
Confidence            7999999999999888767789999999999998888776542    1223333333322322222 2589999999888


Q ss_pred             CCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592         141 PVGPAESLFQASYFELMSRALRPGGIV  167 (197)
Q Consensus       141 ~~~~~~~l~~~~~~~~~~~~LkpgG~l  167 (197)
                      ++.++.    ..++++++++|||||+|
T Consensus        77 ~~l~~~----~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHLEDI----EAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S--S-H----HHHHHHHTTT-TSS-EE
T ss_pred             hhhhhH----HHHHHHHHHHcCCCCCC
Confidence            777444    78999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=2.6e-14  Score=115.30  Aligned_cols=110  Identities=18%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      .+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...  ++ ..+++++++|+.+.++  .++||+|++||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~l~--~~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--GL-EDRVTLIESDLFAALP--GRRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CC-CCcEEEEECchhhhCC--CCCccEEEECC
Confidence            6899999999999999988777789999999999999999997642  11 2469999999866443  35799999998


Q ss_pred             CCCCC-------------CCccc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         139 SDPVG-------------PAESL--------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       139 ~~~~~-------------~~~~l--------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |....             +...+        ....+++.+.+.|+|||.+++..+.
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            74221             10000        1146789999999999999997643

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.59  E-value=6e-14  Score=106.28  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=81.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++.+++.... .+++++|++++.++.+++++...    +..+++++++|+.++++....+||+|++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~----~~~~v~~~~~D~~~~l~~~~~~fDlV~~  127 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL----KAGNARVVNTNALSFLAQPGTPHNVVFV  127 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh----CCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence            456999999999999987655543 69999999999999999998653    2247999999998877543457999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~~  172 (197)
                      |||.....     ..+.++.+.+  .|+|+|.+++...
T Consensus       128 DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        128 DPPFRKGL-----LEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             CCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEEEec
Confidence            99854331     1455565554  3899999998753

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.58  E-value=1e-13  Score=108.98  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~  136 (197)
                      +.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...       +.+++++|+.+.++. ..++||+|++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAA  159 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEE
Confidence            45899999999999999887666579999999999999999997642       247899998765542 1357999999


Q ss_pred             CCCCCCCC--------------Cccc--------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         137 DSSDPVGP--------------AESL--------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       137 ~~~~~~~~--------------~~~l--------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      |||..-..              ...+        ....+++.+.++|+|||.+++....     +....+...+++
T Consensus       160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-----~~~~~v~~~l~~  230 (251)
T TIGR03704       160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-----RQAPLAVEAFAR  230 (251)
T ss_pred             CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----chHHHHHHHHHH
Confidence            99853110              0001        0146888889999999999986533     233445555543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.58  E-value=5.9e-14  Score=106.44  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++.++++..+..+++++|+++++++.+++++...    ...+++++.+|+.+.+......+|.++
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----GVKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCeEEEECchHHHHhhCCCCCCEEE
Confidence            4567999999999999998886655579999999999999999987542    224799999998765544334568887


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++..    ..    ...+++++.++|+|||.+++...+
T Consensus       115 ~~~~----~~----~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        115 IEGG----RP----IKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             EECC----cC----HHHHHHHHHHhcCCCeEEEEEeec
Confidence            7542    11    167899999999999999997643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.58  E-value=1.7e-14  Score=114.63  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +.+.+|||+|||+|..+..+++. .+..+++++|+++++++.|+++....    ..+++++..+|+.+ ++...++||+|
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~----g~~~v~~~~~d~~~-l~~~~~~fD~V  150 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA----GYTNVEFRLGEIEA-LPVADNSVDVI  150 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc----CCCCEEEEEcchhh-CCCCCCceeEE
Confidence            45679999999999887766654 33358999999999999999986542    22478999999865 34345689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++...++.++.    ...++++.++|||||++++.
T Consensus       151 i~~~v~~~~~d~----~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        151 ISNCVINLSPDK----ERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEcCcccCCCCH----HHHHHHHHHHcCCCcEEEEE
Confidence            999877665544    67999999999999999985

>PRK14967 putative methyltransferase; Provisional

Probab=99.58  E-value=5.2e-14  Score=108.83  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+..+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++..     .+.+++++.+|+.+.++  .++||+|+
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~-----~~~~~~~~~~d~~~~~~--~~~fD~Vi  106 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALL-----AGVDVDVRRGDWARAVE--FRPFDVVV  106 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH-----hCCeeEEEECchhhhcc--CCCeeEEE
Confidence            445799999999999999888763 35999999999999999998754     22368899999876432  46899999


Q ss_pred             ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|.......                 ......+++++.+.|||||.+++..
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99875322110                 0001457889999999999998754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.58  E-value=2e-14  Score=111.78  Aligned_cols=104  Identities=20%  Similarity=0.365  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~  129 (197)
                      .++++|||+|||+|+.+.++++. .+..+++++|+++++++.|++++...  ++. ++++++.+|+.+.++.-     .+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCC
Confidence            45789999999999988888764 34579999999999999999998763  333 58999999999877641     36


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +||+|++|...+   .   + ..+++.+.+.|+|||.+++
T Consensus       144 ~fD~VfiDa~k~---~---y-~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        144 EFDFAFVDADKP---N---Y-VHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCEEEECCCHH---H---H-HHHHHHHHHhcCCCeEEEE
Confidence            899999997521   1   1 5789999999999999886

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.58  E-value=2.4e-14  Score=110.12  Aligned_cols=112  Identities=23%  Similarity=0.254  Sum_probs=84.4

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ..++..+.   ..++.+|||||||+|.++..+++..+ ..+++++|+++++++.|++++...    ..++++++.+|+.+
T Consensus        67 ~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~----g~~~v~~~~~d~~~  139 (215)
T TIGR00080        67 AMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL----GLDNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----CCCCeEEEECCccc
Confidence            44444443   25668999999999999998887643 357999999999999999988653    23579999999876


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+.. ..+||+|+++.+.+.          ..+.+.+.|+|||++++....
T Consensus       140 ~~~~-~~~fD~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       140 GWEP-LAPYDRIYVTAAGPK----------IPEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             CCcc-cCCCCEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEcC
Confidence            4432 468999999875322          235678899999999987643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.58  E-value=2.3e-14  Score=109.68  Aligned_cols=132  Identities=14%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      .++...+..+  +++.+|||||||+|.++..+++.. +..++++||+++ +        .      ..++++++++|+.+
T Consensus        40 ~~~~~~~~~~--~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~------~~~~v~~i~~D~~~  102 (209)
T PRK11188         40 DEIQQSDKLF--KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D------PIVGVDFLQGDFRD  102 (209)
T ss_pred             HHHHHHhccC--CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c------CCCCcEEEecCCCC
Confidence            3444444322  456799999999999999888764 346999999998 1        1      12468899999876


Q ss_pred             HH-------hhcCCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592         123 FM-------SEHQQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC  188 (197)
Q Consensus       123 ~~-------~~~~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  188 (197)
                      ..       +...++||+|++++..++...+..       .....++.+.++|+|||.|++..    ...+.+.+++..+
T Consensus       103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l  178 (209)
T PRK11188        103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREI  178 (209)
T ss_pred             hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHH
Confidence            31       123578999999875444322110       01468899999999999999843    2245666677777


Q ss_pred             HhhCCccc
Q psy4592         189 ASVFPRLH  196 (197)
Q Consensus       189 ~~~f~~v~  196 (197)
                      +..|..++
T Consensus       179 ~~~f~~v~  186 (209)
T PRK11188        179 RSLFTKVK  186 (209)
T ss_pred             HhCceEEE
Confidence            77777664

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.58  E-value=6.1e-14  Score=112.37  Aligned_cols=120  Identities=20%  Similarity=0.185  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||+|||+|.++..+++.+ ..+++++|+++.+++.|+++....  +. ..++.+..++..   ....++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n--~~-~~~~~~~~~~~~---~~~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN--QV-SDRLQVKLIYLE---QPIEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CC-CcceEEEecccc---cccCCCceEEE
Confidence            456899999999999998887764 469999999999999999987642  11 235666666632   22246899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP  193 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~  193 (197)
                      ++....     .  ...++.++.++|||||.+++....    ......+.+.+++.|.
T Consensus       231 an~~~~-----~--l~~ll~~~~~~LkpgG~li~sgi~----~~~~~~v~~~~~~~f~  277 (288)
T TIGR00406       231 ANILAE-----V--IKELYPQFSRLVKPGGWLILSGIL----ETQAQSVCDAYEQGFT  277 (288)
T ss_pred             EecCHH-----H--HHHHHHHHHHHcCCCcEEEEEeCc----HhHHHHHHHHHHccCc
Confidence            987421     1  156889999999999999986432    3445556666655454

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=2.8e-14  Score=108.94  Aligned_cols=103  Identities=23%  Similarity=0.285  Sum_probs=79.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++++++.|++++...+  + ..+++++.+|+.+.++. ..+||+|
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~-~~~v~~~~~d~~~~~~~-~~~fD~I  146 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--Y-WGVVEVYHGDGKRGLEK-HAPFDAI  146 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEECCcccCCcc-CCCccEE
Confidence            4557999999999999988876532 4689999999999999999876531  1 23689999998765443 4689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +++.....          +.+++.+.|+|||++++...
T Consensus       147 i~~~~~~~----------~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        147 IVTAAAST----------IPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             EEccCcch----------hhHHHHHhcCcCcEEEEEEc
Confidence            99876432          22567889999999998653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.58  E-value=7.8e-15  Score=113.32  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      ++|||||||+|..+..+++..+..+++++|+++++++.+++++...  ++ .++++++.+|+.+. +. .++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~i~~~~~d~~~~-~~-~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GL-QGRIRIFYRDSAKD-PF-PDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CcceEEEecccccC-CC-CCCCCEeehHH
Confidence            4799999999999998887766679999999999999999987542  12 35789999997543 22 35899999876


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..++..+.    ..++++++++|||||.+++..
T Consensus        76 ~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHHIKDK----MDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHhCCCH----HHHHHHHHHHcCCCCEEEEEE
Confidence            65555443    789999999999999999864

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.57  E-value=2.9e-14  Score=109.38  Aligned_cols=115  Identities=24%  Similarity=0.262  Sum_probs=84.8

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      ..+..++..+.   ..++.+|||||||+|+++..+++.. +..+++++|+++++++.+++++...    ...+++++++|
T Consensus        63 ~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~----g~~~v~~~~gd  135 (212)
T PRK13942         63 HMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL----GYDNVEVIVGD  135 (212)
T ss_pred             HHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEECC
Confidence            33444444443   2466899999999999998887653 3469999999999999999987653    23479999999


Q ss_pred             hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       120 ~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...+. ...+||+|+++...+.          ..+.+.+.|||||.+++....
T Consensus       136 ~~~~~~-~~~~fD~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        136 GTLGYE-ENAPYDRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPVGS  178 (212)
T ss_pred             cccCCC-cCCCcCEEEECCCccc----------chHHHHHhhCCCcEEEEEEcC
Confidence            876443 2468999999765322          224567789999999986543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.57  E-value=3.1e-14  Score=121.50  Aligned_cols=105  Identities=21%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|..+..+++..+ .+++++|+++++++.|+++...     ...++++.++|+.+. +.+.++||+|+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD~I~  337 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKK-TYPDNSFDVIY  337 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccC-CCCCCCEEEEE
Confidence            4567999999999999988887653 6999999999999999987643     235799999997652 33356899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+++    ..++++++++|||||.+++..
T Consensus       338 s~~~l~h~~d~----~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        338 SRDTILHIQDK----PALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             ECCcccccCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence            98776666554    789999999999999999864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.57  E-value=8.3e-14  Score=110.29  Aligned_cols=132  Identities=18%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..++...+ ...++++|+++.+++.+++++...    ...+++++..|+..+.. ..++||.|
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~----g~~~v~~~~~D~~~~~~-~~~~fD~V  144 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC----GVLNVAVTNFDGRVFGA-AVPKFDAI  144 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc----CCCcEEEecCCHHHhhh-hccCCCEE
Confidence            4567999999999999988876432 358999999999999999988753    22478999999876433 34579999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++|+|....    .++..              ...++++.+.+.|||||+++..+++...  +....+.+.+.+.+|+
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~--~Ene~vv~~~l~~~~~  220 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP--EENEAVVDYLLEKRPD  220 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--HHHHHHHHHHHHhCCC
Confidence            999986432    11110              1246899999999999999988766333  3334445544444443

>PRK04266 fibrillarin; Provisional

Probab=99.57  E-value=7.6e-14  Score=107.82  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--hhcCCcee
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--SEHQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~D  132 (197)
                      ..++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+....      .+++.++.+|+.+..  ....++||
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence            3566799999999999999998765446899999999999977766542      257899999986421  11135699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+++...++   .   ...+++++.++|||||.+++.
T Consensus       144 ~i~~d~~~p~---~---~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        144 VIYQDVAQPN---Q---AEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EEEECCCChh---H---HHHHHHHHHHhcCCCcEEEEE
Confidence            9998765311   1   134689999999999999985

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.2e-14  Score=107.02  Aligned_cols=110  Identities=26%  Similarity=0.399  Sum_probs=89.1

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      -..|+..+..   .++.+|||||||+|+.+..+++..  .+|+.+|..++..+.|++++...    ...|+.++++|...
T Consensus        61 vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l----g~~nV~v~~gDG~~  131 (209)
T COG2518          61 VARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL----GYENVTVRHGDGSK  131 (209)
T ss_pred             HHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc----CCCceEEEECCccc
Confidence            3445554432   567899999999999999888875  39999999999999999998764    34579999999988


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      .++. ..+||.|++....+..|          +.+.+.||+||++++..+
T Consensus       132 G~~~-~aPyD~I~Vtaaa~~vP----------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         132 GWPE-EAPYDRIIVTAAAPEVP----------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCC-CCCcCEEEEeeccCCCC----------HHHHHhcccCCEEEEEEc
Confidence            7765 47899999988765554          446779999999999876

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.56  E-value=5.9e-14  Score=120.22  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             CCCcEEEEcCeeeeeccchhhH-HHHHHhhcc---------------------cCCCCCCeEEEEeCCchHhHHHHhcCC
Q psy4592          22 EFGTALILDGIIQCTEFDEFSY-SEMIAFLPL---------------------CSHPNPKKVLIVGGGDGGVAREVLKHP   79 (197)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~~~vLdiG~G~G~~~~~l~~~~   79 (197)
                      .||..+.++..+-...++-... ...+..+..                     ....++.+|||+|||+|.++..+++..
T Consensus        81 F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~  160 (506)
T PRK01544         81 FYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL  160 (506)
T ss_pred             EcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHC
Confidence            4788888887666555543222 333332210                     001134689999999999999888766


Q ss_pred             CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC--------------
Q psy4592          80 SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA--------------  145 (197)
Q Consensus        80 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~--------------  145 (197)
                      +..+++++|+|+.+++.|+++....  ++ ..+++++.+|+.+.+.  .++||+|++|||......              
T Consensus       161 p~~~v~avDis~~al~~A~~N~~~~--~l-~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~  235 (506)
T PRK01544        161 PNANVIATDISLDAIEVAKSNAIKY--EV-TDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPS  235 (506)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHc--CC-ccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcH
Confidence            6689999999999999999987542  11 2478999999765432  358999999997432110              


Q ss_pred             cccc--------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         146 ESLF--------QASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       146 ~~l~--------~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..++        -..+++++.+.|+|||.+++..+
T Consensus       236 ~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        236 IALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            0011        13467788899999999998653

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.56  E-value=6.4e-14  Score=106.74  Aligned_cols=105  Identities=24%  Similarity=0.402  Sum_probs=88.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~D  132 (197)
                      .++++||+||++.|+.+.+++...+ ..++++||++|++.+.|++++.+  .+.. +++..+. +|+.+.+.. ..++||
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~--ag~~-~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE--AGVD-DRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH--cCCc-ceEEEEecCcHHHHHHhccCCCcc
Confidence            4778999999999999999998665 67999999999999999999876  3333 4688888 699998875 468999


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||.|......       +++++.+.++|+|||.+++-
T Consensus       135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDADKADY-------PEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEe
Confidence            99999842221       78999999999999999874

>PRK08317 hypothetical protein; Provisional

Probab=99.56  E-value=1.7e-13  Score=106.25  Aligned_cols=106  Identities=24%  Similarity=0.301  Sum_probs=85.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+|||+|||+|.++..++... +..+++++|+++.+++.++++...     ..+++++..+|+.+. +...++||+|
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~-~~~~~~~D~v   91 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGL-PFPDGSFDAV   91 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccC-CCCCCCceEE
Confidence            456799999999999999888764 557999999999999999887322     245789999997652 3335789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....++..+.    ..+++++.++|||||.+++..
T Consensus        92 ~~~~~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         92 RSDRVLQHLEDP----ARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEechhhccCCH----HHHHHHHHHHhcCCcEEEEEe
Confidence            998876665554    679999999999999998865

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.56  E-value=5.3e-14  Score=114.27  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+++|||||||+|.++..++..++ ..|+++|.++.++..++.......   ...+++++.+|+.+. +. .++||+|++
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~s  195 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVFS  195 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEEE
Confidence            457999999999999999888754 479999999998865433211100   235799999998764 43 578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....++..++    ..+++++++.|+|||.+++..
T Consensus       196 ~~vl~H~~dp----~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        196 MGVLYHRRSP----LDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CChhhccCCH----HHHHHHHHHhcCCCcEEEEEE
Confidence            8776665544    679999999999999999863

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.55  E-value=3.4e-14  Score=107.49  Aligned_cols=123  Identities=19%  Similarity=0.259  Sum_probs=93.3

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEEEEC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I~~~  137 (197)
                      .+||||||.|.+...+++..|...+.|||+....+..+.+.....    ..+|+.++++|+...+..  .+++.|.|+.+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            899999999999999998888899999999999888777665432    346999999999987765  35799999999


Q ss_pred             CCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         138 SSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       138 ~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      .|.||..    ..++.++.+++.+.++|+|||.+.+.+..    .+.+...++.+..
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~~~~~~~~  148 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEWMLEQFEE  148 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence            9999862    35678899999999999999999998766    3455555555544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.55  E-value=1.1e-13  Score=116.51  Aligned_cols=133  Identities=16%  Similarity=0.149  Sum_probs=95.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..++... +..+++++|+++.+++.+++++...    ...++++.++|+.++.....++||.|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~----g~~~v~~~~~Da~~l~~~~~~~fD~V  311 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL----KLSSIEIKIADAERLTEYVQDTFDRI  311 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhhhhhhhhccCCEE
Confidence            456799999999999998888653 3469999999999999999987653    22468999999887542334689999


Q ss_pred             EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++|+|.....    ++..              ...+.+.++.+.|||||.+++.+++...  +....+.+.|-+.+|+
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~--eEne~vv~~fl~~~~~  387 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK--EENTEVVKRFVYEQKD  387 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--hhCHHHHHHHHHhCCC
Confidence            9999863321    1100              1256789999999999999998877433  3334444434333443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=6.6e-14  Score=107.60  Aligned_cols=123  Identities=25%  Similarity=0.393  Sum_probs=101.3

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..++.+|+|.|.|+|.++.+++. .++..+++.+|+.++..+.|++|+...  ++. +++++..+|+.+....  +.||+
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~-d~v~~~~~Dv~~~~~~--~~vDa  166 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLG-DRVTLKLGDVREGIDE--EDVDA  166 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccc-cceEEEeccccccccc--cccCE
Confidence            35778999999999999999986 456689999999999999999998764  333 3599999999886654  48999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCcc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRL  195 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~v  195 (197)
                      |+.|.+.||         ++++.+.++|||||.+++.+.+    .+++++....+++. |-++
T Consensus       167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~~l~~~g~~~i  216 (256)
T COG2519         167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPT----VEQVEKTVEALRERGFVDI  216 (256)
T ss_pred             EEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHHHHHhcCccch
Confidence            999997544         4889999999999999997644    57888888888877 6554

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=2.7e-14  Score=114.43  Aligned_cols=103  Identities=18%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|..+..+++.+  .+++++|+++.+++.++++...     .+.++++...|+....  ..++||+|++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~-----~~l~v~~~~~D~~~~~--~~~~fD~I~~  190 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEK-----ENLNIRTGLYDINSAS--IQEEYDFILS  190 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH-----cCCceEEEEechhccc--ccCCccEEEE
Confidence            45699999999999999988764  6999999999999999987654     2236888888875532  2578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ....+..+...  ...+++++.++|+|||++++.
T Consensus       191 ~~vl~~l~~~~--~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        191 TVVLMFLNRER--IPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cchhhhCCHHH--HHHHHHHHHHhcCCCcEEEEE
Confidence            88766543222  267999999999999996654

>PLN02476 O-methyltransferase

Probab=99.54  E-value=9.2e-14  Score=109.77  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=86.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~  129 (197)
                      .++++|||||+++|+.+.++++.. +..+++++|.+++..+.|++++...  ++. ++++++.+|+.+.++..     .+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~  193 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGS  193 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCC
Confidence            467899999999999999988753 3468999999999999999998763  333 58999999999987642     35


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||+|+.|....   .    ..++++.+.++|+|||.+++.
T Consensus       194 ~FD~VFIDa~K~---~----Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        194 SYDFAFVDADKR---M----YQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCEEEECCCHH---H----HHHHHHHHHHhcCCCcEEEEe
Confidence            899999998521   1    167999999999999998875

>TIGR00452 methyltransferase, putative

Probab=99.54  E-value=7.4e-14  Score=112.57  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHH---hhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSK---KYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .++++|||+|||+|.++..++..+. ..++++|.++.++..++   +...      ...++.+..+++.+. +. ..+||
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l-p~-~~~FD  190 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL-HE-LYAFD  190 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-CC-CCCcC
Confidence            4567999999999999888887654 57999999999886543   3322      235788888887664 32 35899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|++....++.+++    ..++++++++|||||.+++..
T Consensus       191 ~V~s~gvL~H~~dp----~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       191 TVFSMGVLYHRKSP----LEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEEcchhhccCCH----HHHHHHHHHhcCCCCEEEEEE
Confidence            99999877666554    679999999999999999864

Known examples to date are restricted to the proteobacteria.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.54  E-value=2.1e-14  Score=109.17  Aligned_cols=105  Identities=29%  Similarity=0.466  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~  129 (197)
                      .++++||+||+++|+.+.++++..+ ..+++.+|++++..+.|++++...  ++ ..+++++.+|+.+.++.-     .+
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~-~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GL-DDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TG-GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CC-CCcEEEEEeccHhhHHHHHhccCCC
Confidence            4678999999999999999997643 579999999999999999988752  33 358999999999987741     25


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||+|+.|...      ..+ ..+++.+.++|+|||++++-
T Consensus       121 ~fD~VFiDa~K------~~y-~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  121 QFDFVFIDADK------RNY-LEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             SEEEEEEESTG------GGH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEEcccc------cch-hhHHHHHhhhccCCeEEEEc
Confidence            89999999842      111 67999999999999999986

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK06922 hypothetical protein; Provisional

Probab=99.53  E-value=1.1e-13  Score=119.46  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~  135 (197)
                      ++.+|||+|||+|..+..+++..+..+++++|+++.|++.|+++.+.     .+.+++++++|+.+... ..+++||+|+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-----~g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-----EGRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCCeEEEEcchHhCccccCCCCEEEEE
Confidence            46799999999999988888766778999999999999999987643     23478889999876321 2457899999


Q ss_pred             ECCCCCCCCC---------cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPA---------ESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~---------~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.+.|+...         ..-....++++++++|||||.+++.-
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9877654210         00112678999999999999999964

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.53  E-value=1e-13  Score=110.01  Aligned_cols=128  Identities=22%  Similarity=0.269  Sum_probs=92.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~  133 (197)
                      ..+++|||+-|.||+++.++++.+ ..+++.||.|..+++.+++|+..  ++++..+++++.+|+.+++..  ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~l--Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAAL--NGLDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHH--TT-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--cCCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            356899999999999999877654 46899999999999999999875  344556899999999998764  3579999


Q ss_pred             EEECCCCCCCCCccccc--HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592         134 IITDSSDPVGPAESLFQ--ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ  186 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~--~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  186 (197)
                      ||+|||........+..  .+++..+.++|+|||.+++.++++....+.+.+...
T Consensus       199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~  253 (286)
T PF10672_consen  199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA  253 (286)
T ss_dssp             EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence            99999964432222211  457888999999999999999998887766655443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.53  E-value=2e-13  Score=107.37  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+.+.+. .+++++|+|+.+++.|++++...  +. ..++.+..+|         .+||+|+
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~--~~-~~~~~~~~~~---------~~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN--GV-ELNVYLPQGD---------LKADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CC-CceEEEccCC---------CCcCEEE
Confidence            4668999999999999988777643 57999999999999999987642  11 1234433332         2799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++...+    .   ...+++++.++|||||.+++....    ......+...+++.
T Consensus       185 ani~~~----~---~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~  229 (250)
T PRK00517        185 ANILAN----P---LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEA  229 (250)
T ss_pred             EcCcHH----H---HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHC
Confidence            986421    1   156889999999999999996432    23444555555544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.9e-13  Score=107.07  Aligned_cols=139  Identities=22%  Similarity=0.335  Sum_probs=94.7

Q ss_pred             CCcEEEEcCeeeeeccchhhH-HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhc
Q psy4592          23 FGTALILDGIIQCTEFDEFSY-SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL  101 (197)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~  101 (197)
                      +|..+..+..+-...++-... ..++..+.    ..+.+|||+|||+|.++..+++..+..+|+++|+|+..++.|++|.
T Consensus        79 ~gl~~~v~~~vliPr~dTe~Lve~~l~~~~----~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na  154 (280)
T COG2890          79 GGLRFKVDEGVLIPRPDTELLVEAALALLL----QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA  154 (280)
T ss_pred             cceeeeeCCCceecCCchHHHHHHHHHhhh----hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence            555666665555444443333 22221111    1112899999999999999999988789999999999999999998


Q ss_pred             CCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC-CCC-----C-----Cc--cc--------ccHHHHHHHHhh
Q psy4592         102 PGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD-PVG-----P-----AE--SL--------FQASYFELMSRA  160 (197)
Q Consensus       102 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~-~~~-----~-----~~--~l--------~~~~~~~~~~~~  160 (197)
                      ...  ++  .++.++.+|..+   .-.++||+|++|||. +..     +     .+  .+        ....++.++.+.
T Consensus       155 ~~~--~l--~~~~~~~~dlf~---~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~  227 (280)
T COG2890         155 ERN--GL--VRVLVVQSDLFE---PLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI  227 (280)
T ss_pred             HHc--CC--ccEEEEeeeccc---ccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence            752  11  456666666433   223489999999984 221     0     00  01        125688899999


Q ss_pred             cCCCcEEEEEcC
Q psy4592         161 LRPGGIVCSQAG  172 (197)
Q Consensus       161 LkpgG~l~~~~~  172 (197)
                      |+|||.+++...
T Consensus       228 l~~~g~l~le~g  239 (280)
T COG2890         228 LKPGGVLILEIG  239 (280)
T ss_pred             cCCCcEEEEEEC
Confidence            999999999764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=1.5e-13  Score=115.70  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=87.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..+++..+..+++++|+++.+++.+++++...     +.+++++++|+.+.... ..++||.|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-----g~~~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-----GLKATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEcCcccchhhcccCCCCEE
Confidence            4567999999999999999887655479999999999999999998753     22468999998764321 24679999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|+|....    ..+..              ...++++.+.+.|||||.+++.+++...
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            999985421    01100              0136899999999999999998876444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=1.4e-13  Score=116.60  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..+++.. +..+++++|+++++++.+++++...    ...+++++++|+.+......++||+|
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~----g~~~v~~~~~D~~~~~~~~~~~fD~V  324 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL----GLTNIETKALDARKVHEKFAEKFDKI  324 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCCcccccchhcccCCEE
Confidence            455799999999999999988753 4479999999999999999988653    22359999999876532223689999


Q ss_pred             EECCCCCCC------CCcc-------c-----ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVG------PAES-------L-----FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~------~~~~-------l-----~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|+|....      ++..       +     ...++++.+.++|||||.++..+++...
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  384 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK  384 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence            999975321      1000       0     1245899999999999999987766443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.52  E-value=1.3e-13  Score=114.29  Aligned_cols=102  Identities=24%  Similarity=0.329  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+ .+++++|+|+++++.|+++...       .++++..+|..+.    .++||.|+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l----~~~fD~Iv  233 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL----NGQFDRIV  233 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc----CCCCCEEE
Confidence            4567999999999999998887654 6999999999999999998642       2488888887543    36899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+...  .+.+++++.++|||||.+++..
T Consensus       234 s~~~~ehvg~~~--~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        234 SVGMFEHVGPKN--YRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EeCchhhCChHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence            876654432221  1679999999999999999865

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.52  E-value=1.5e-13  Score=121.97  Aligned_cols=117  Identities=20%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++++|||+|||+|+++..+++.+ ..+|++||+|+.+++.|++|+...  +++..+++++++|+.+++....++||+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            46799999999999999998763 357999999999999999998753  233247999999999887654568999999


Q ss_pred             CCCCCCCCCc--ccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         137 DSSDPVGPAE--SLF-----QASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       137 ~~~~~~~~~~--~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      |||.......  ...     -.++++.+.++|+|||.+++.++....
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~  661 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF  661 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence            9986432111  000     146788889999999999987765443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.52  E-value=6.7e-14  Score=108.93  Aligned_cols=144  Identities=24%  Similarity=0.384  Sum_probs=100.2

Q ss_pred             ccchhhHHHHHHh-hcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE
Q psy4592          37 EFDEFSYSEMIAF-LPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT  114 (197)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~  114 (197)
                      .+.+-.|..-+.. +..+...++.+|||-|+|+|+++.++++. .+..+++.+|+.++.++.|++++..+  ++ ..+++
T Consensus        19 rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl-~~~v~   95 (247)
T PF08704_consen   19 RRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GL-DDNVT   95 (247)
T ss_dssp             SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TC-CTTEE
T ss_pred             CCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CC-CCCce
Confidence            3445556332222 22344477899999999999999998863 55679999999999999999998764  22 35899


Q ss_pred             EEEcchH-HHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc-CCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         115 VHVGDGF-RFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL-RPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       115 ~~~~d~~-~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +.+.|+. +.... ....+|+|+.|.|.||.         .+..+.++| |+||++++.+.+    .++.++.+..+++.
T Consensus        96 ~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~---------~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~~  162 (247)
T PF08704_consen   96 VHHRDVCEEGFDEELESDFDAVFLDLPDPWE---------AIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALREH  162 (247)
T ss_dssp             EEES-GGCG--STT-TTSEEEEEEESSSGGG---------GHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHHT
T ss_pred             eEecceecccccccccCcccEEEEeCCCHHH---------HHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHHC
Confidence            9999985 33321 23689999999976554         678899999 899999997655    58888888888875


Q ss_pred             -CCccc
Q psy4592         192 -FPRLH  196 (197)
Q Consensus       192 -f~~v~  196 (197)
                       |.+++
T Consensus       163 gf~~i~  168 (247)
T PF08704_consen  163 GFTDIE  168 (247)
T ss_dssp             TEEEEE
T ss_pred             CCeeeE
Confidence             66553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.52  E-value=5e-14  Score=104.76  Aligned_cols=126  Identities=18%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.-.++||+|||.|.++..|+.+.  .+++++|+++..++.|+++...      .++++++++|+.++.+  .++||+|+
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~P--~~~FDLIV  111 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFWP--EGRFDLIV  111 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEEE
T ss_pred             cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCCC--CCCeeEEE
Confidence            444799999999999999998886  6999999999999999999863      4689999999877654  47999999


Q ss_pred             ECCCCCCCCCc-ccccHHHHHHHHhhcCCCcEEEEEcCC-----CCcChhHHHHHHHHHHhhCC
Q psy4592         136 TDSSDPVGPAE-SLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCVGNTLQHCASVFP  193 (197)
Q Consensus       136 ~~~~~~~~~~~-~l~~~~~~~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~~~~~~~f~  193 (197)
                      +.-..++..+. .+  ..+++.+.+.|+|||.+++-...     .|......+.+...+.+.+-
T Consensus       112 ~SEVlYYL~~~~~L--~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~  173 (201)
T PF05401_consen  112 LSEVLYYLDDAEDL--RAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT  173 (201)
T ss_dssp             EES-GGGSSSHHHH--HHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred             EehHhHcCCCHHHH--HHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence            98776665432 22  56889999999999999985321     13333344555555555543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.52  E-value=1.6e-13  Score=108.98  Aligned_cols=110  Identities=20%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             CCCCeEEEEeCCchHhHHH-Hh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVARE-VL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~-l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+++|+|||||.|.++.. ++ ...+.++++++|+|+++++.|++.+..- .++ .++++|+.+|+.+... ..++||+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~-~l~~FDl  198 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTE-SLKEYDV  198 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhccc-ccCCcCE
Confidence            3778999999997755433 33 3567789999999999999999988421 122 3589999999987432 2468999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++...++....   ..+.++++.+.|+|||++++-+
T Consensus       199 VF~~ALi~~dk~~---k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEE---KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEeccccccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence            9999433433222   2789999999999999999976

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.1e-13  Score=109.74  Aligned_cols=123  Identities=21%  Similarity=0.182  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||+|||+|.++.++++.+. .+++++|+||-.++.|+.|...+  +.. ...+....+..+..  ..++||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N--~v~-~~~~~~~~~~~~~~--~~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN--GVE-LLVQAKGFLLLEVP--ENGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc--CCc-hhhhcccccchhhc--ccCcccEEE
Confidence            4778999999999999999988854 78999999999999999998752  111 11222223322221  236899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh-hCCcc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS-VFPRL  195 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~f~~v  195 (197)
                      +|.-....       ..+...+.+.|||||+++++..-    .+....+...+.+ -|..+
T Consensus       235 ANILA~vl-------~~La~~~~~~lkpgg~lIlSGIl----~~q~~~V~~a~~~~gf~v~  284 (300)
T COG2264         235 ANILAEVL-------VELAPDIKRLLKPGGRLILSGIL----EDQAESVAEAYEQAGFEVV  284 (300)
T ss_pred             ehhhHHHH-------HHHHHHHHHHcCCCceEEEEeeh----HhHHHHHHHHHHhCCCeEe
Confidence            99842111       56889999999999999996522    4556666666643 35433

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.51  E-value=4.7e-14  Score=107.61  Aligned_cols=116  Identities=28%  Similarity=0.369  Sum_probs=85.8

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV  117 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  117 (197)
                      .+..+..++..+.+   +++.+|||||||+|+.+..+++. .+...+++||+++.+++.|++++..+    ...++.+++
T Consensus        57 ~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~----~~~nv~~~~  129 (209)
T PF01135_consen   57 APSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL----GIDNVEVVV  129 (209)
T ss_dssp             -HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH----TTHSEEEEE
T ss_pred             HHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh----ccCceeEEE
Confidence            45556677776653   56789999999999999888875 33457999999999999999998754    345899999


Q ss_pred             cchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       118 ~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +|....++. ..+||.|++.......|          ..+.+.|++||++++...
T Consensus       130 gdg~~g~~~-~apfD~I~v~~a~~~ip----------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  130 GDGSEGWPE-EAPFDRIIVTAAVPEIP----------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             S-GGGTTGG-G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             cchhhcccc-CCCcCEEEEeeccchHH----------HHHHHhcCCCcEEEEEEc
Confidence            999876654 46899999988653322          456778999999999764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.51  E-value=1.2e-13  Score=109.93  Aligned_cols=97  Identities=23%  Similarity=0.343  Sum_probs=75.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC---CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS---VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ...+|||+|||+|.++..+.+..+   ...++++|+++++++.|++..         +++++.++|+.+ ++..+++||+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~-lp~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHR-LPFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeeccc-CCCcCCceeE
Confidence            446899999999999988876543   247999999999999998753         357888899765 3444678999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      |++...           +..++++.++|||||++++....+
T Consensus       155 I~~~~~-----------~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        155 IIRIYA-----------PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             EEEecC-----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence            997542           124578999999999999876443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.51  E-value=7.3e-13  Score=101.99  Aligned_cols=111  Identities=23%  Similarity=0.304  Sum_probs=95.0

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~  136 (197)
                      ..+||||||.|.+...+++..|...+.|||+....+..|.+.+...    .-+|+.+++.||.+.+..-  +++.|-|+.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence            4899999999999999999989999999999998888777766542    2238999999999988763  449999999


Q ss_pred             CCCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.|+||..    -.++..+.+++.+.+.|+|||.+.+.+..
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            99999962    25588899999999999999999997755

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.50  E-value=2.1e-13  Score=111.27  Aligned_cols=111  Identities=18%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++.+++...  ..++++|+++.+++.+++++...    ...++++.++|+.+. +...++||+|+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~----g~~~i~~~~~D~~~l-~~~~~~~D~Iv  253 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHY----GIEDFFVKRGDATKL-PLSSESVDAIA  253 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHh----CCCCCeEEecchhcC-CcccCCCCEEE
Confidence            556799999999999988876653  78999999999999999987642    223488999998763 33357899999


Q ss_pred             ECCCCCCCCC--cc---cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPA--ES---LFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~--~~---l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|||......  ..   -...++++++.++|+|||++++....
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            9998644211  11   11267999999999999999887644

This family is found exclusively in the Archaea.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=2.8e-13  Score=114.67  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..+++.. +..+++++|+++.+++.+++++...    ...+++++++|+.+..  ..++||+|
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~----g~~~v~~~~~Da~~~~--~~~~fD~V  322 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL----GITIIETIEGDARSFS--PEEQPDAI  322 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh----CCCeEEEEeCcccccc--cCCCCCEE
Confidence            455799999999999988877643 2359999999999999999988653    2246899999987754  24689999


Q ss_pred             EECCCCCCCC----Cc----cc----------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVGP----AE----SL----------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~~----~~----~l----------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|+|.....    .+    ..          ...+++..+.+.|||||++++.+++...
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~  382 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP  382 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            9998753321    10    00          1135899999999999999999877544

>PTZ00146 fibrillarin; Provisional

Probab=99.50  E-value=1.5e-12  Score=103.27  Aligned_cols=137  Identities=16%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             HHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .++.-+..+...+..+|||+|||+|.++..++... +...|++||+++++.+.+.+....      .+|+.++.+|++..
T Consensus       120 ~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p  193 (293)
T PTZ00146        120 AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYP  193 (293)
T ss_pred             HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccCh
Confidence            33344554444666899999999999999999764 346899999999866444433221      24788999998642


Q ss_pred             H--hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc----C-hhHHHHHHHHHHhh-CC
Q psy4592         124 M--SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----S-LDCVGNTLQHCASV-FP  193 (197)
Q Consensus       124 ~--~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~----~-~~~~~~~~~~~~~~-f~  193 (197)
                      .  ....+++|+|++|...   ++.   ...++.++.+.|||||.|++.......    . .+.+.+..+.+++. |.
T Consensus       194 ~~y~~~~~~vDvV~~Dva~---pdq---~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~  265 (293)
T PTZ00146        194 QKYRMLVPMVDVIFADVAQ---PDQ---ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK  265 (293)
T ss_pred             hhhhcccCCCCEEEEeCCC---cch---HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence            2  2124579999999853   221   145667899999999999985422111    1 12334444666665 54

>PHA03411 putative methyltransferase; Provisional

Probab=99.50  E-value=3.5e-13  Score=105.74  Aligned_cols=118  Identities=22%  Similarity=0.261  Sum_probs=86.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++         ++++++++|+.++..  ..+||+|++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs  132 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS  132 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence            346999999999999888877654479999999999999998864         257899999987643  368999999


Q ss_pred             CCCCCCCCCcc-----cc-----------cHHHHHHHHhhcCCCcEEEEEc-CCCCcChhHHHHHH
Q psy4592         137 DSSDPVGPAES-----LF-----------QASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTL  185 (197)
Q Consensus       137 ~~~~~~~~~~~-----l~-----------~~~~~~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~  185 (197)
                      |+|.+..+...     -+           -..+++....+|+|+|.+.+-. ..+.+....-...+
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y  198 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY  198 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH
Confidence            99976531110     01           1567888899999999765543 33555444434444

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=4.5e-13  Score=113.11  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hcCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~  131 (197)
                      .++.+|||+|||+|+.+..+++.. +..+++++|+++.+++.+++++...    ...+++++++|+.+...   ...++|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL----GLKSIKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc----CCCeEEEEeCChhhcccccccccccC
Confidence            456799999999999999888653 3368999999999999999988653    22469999999877532   123689


Q ss_pred             eEEEECCCCCCC------CCcc-c-----------ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         132 DVIITDSSDPVG------PAES-L-----------FQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       132 D~I~~~~~~~~~------~~~~-l-----------~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      |.|++|+|....      ++.. .           ...++++++.+.|||||.++..+++.
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            999999885321      1100 0           02578999999999999999887663

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.49  E-value=1.7e-13  Score=104.44  Aligned_cols=99  Identities=19%  Similarity=0.270  Sum_probs=76.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|..+..+.+..+..++++||+|+++++.|+++++         ++++.++|+.+  +...++||+|+
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--~~~~~sfD~V~  110 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--PFKDNFFDLVL  110 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--CCCCCCEEEEE
Confidence            45679999999999999998876556899999999999999988653         45677888766  33467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ++...++.++..  ..++++++.+++  ++++++
T Consensus       111 ~~~vL~hl~p~~--~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       111 TKGVLIHINPDN--LPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             ECChhhhCCHHH--HHHHHHHHHhhc--CcEEEE
Confidence            988775543221  267888999987  445555

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02672 methionine S-methyltransferase

Probab=99.49  E-value=1.5e-12  Score=118.45  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC------------CCCCCeEEEEcchHHHHh
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG------------LSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~d~~~~~~  125 (197)
                      +.+|||+|||+|.++..+++..+..+++++|+|+++++.|++|....+..            ....+++++++|..+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999998776679999999999999999987642100            011479999999877653


Q ss_pred             hcCCceeEEEECCCCCCC--------------C---------Cccccc-----------HHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVG--------------P---------AESLFQ-----------ASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~--------------~---------~~~l~~-----------~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....+||+||+|||.-..              |         ...|..           ..+++++.+.|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            322479999999983110              0         111211           457788889999999999987


Q ss_pred             CC
Q psy4592         172 GT  173 (197)
Q Consensus       172 ~~  173 (197)
                      +.
T Consensus       279 G~  280 (1082)
T PLN02672        279 GG  280 (1082)
T ss_pred             Cc
Confidence            54

>KOG1270|consensus

Probab=99.49  E-value=4.1e-14  Score=108.85  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=80.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC---CCeEEEEcchHHHHhhcCCceeEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD---PRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++|||+|||+|-++..|++.+  ++|+|||+++.+++.|+..... ...++.   .++++.+.|++.    ..++||+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~-dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM-DPVLEGAIAYRLEYEDTDVEG----LTGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc-Cchhccccceeeehhhcchhh----ccccccee
Confidence            3689999999999999999886  7999999999999999987322 011111   135666666543    24569999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++.....+..++    +++++.+.+.|||||.+++....
T Consensus       163 vcsevleHV~dp----~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  163 VCSEVLEHVKDP----QEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             eeHHHHHHHhCH----HHHHHHHHHHhCCCCceEeeehh
Confidence            998766555444    78999999999999999998654

>PRK05785 hypothetical protein; Provisional

Probab=99.49  E-value=5.8e-13  Score=103.15  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||||.++..+.+.. ..+++++|++++|++.|++..            ..+++|+.+ ++..+++||+|++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~-lp~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEA-LPFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhh-CCCCCCCEEEEEe
Confidence            36799999999999999888765 369999999999999987631            245788765 4556789999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGG  165 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG  165 (197)
                      ....++.++.    +..+++++|+|||.+
T Consensus       117 ~~~l~~~~d~----~~~l~e~~RvLkp~~  141 (226)
T PRK05785        117 SFALHASDNI----EKVIAEFTRVSRKQV  141 (226)
T ss_pred             cChhhccCCH----HHHHHHHHHHhcCce
Confidence            8877665554    789999999999943

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.48  E-value=6.6e-14  Score=119.54  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-HhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~D~I~  135 (197)
                      +..+|||||||+|.++..+++..  .+++++|+++++++.+++...      ..++++++++|+.+. ++...++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence            45699999999999999998764  589999999999988766432      235789999998532 233457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.+.++.++..  ..+++++++++|||||++++.-
T Consensus       109 ~~~~l~~l~~~~--~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        109 SNWLLMYLSDKE--VENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             hhhhHHhCCHHH--HHHHHHHHHHhcCCCeEEEEEe
Confidence            998876665432  1679999999999999998863

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.47  E-value=1.7e-12  Score=99.77  Aligned_cols=105  Identities=22%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++...      ..++++..+|+.+.. ...++||+|
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~i  110 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDAV  110 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEEE
Confidence            35679999999999999998877654 5899999999999999987651      347889999987632 335689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....+...+.    ..+++++.+.|+|||++++..
T Consensus       111 ~~~~~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       111 TIAFGLRNVTDI----QKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEeeeeCCcccH----HHHHHHHHHHcCCCcEEEEEE
Confidence            987665554443    679999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.47  E-value=6.5e-13  Score=111.91  Aligned_cols=118  Identities=16%  Similarity=0.247  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..+++..+..+++++|+++++++.+++++...+  .. ..+.+..+|+...... ..++||.|
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDRI  313 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCEE
Confidence            45679999999999999998876555799999999999999999987531  11 2344466775432111 24679999


Q ss_pred             EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|+|.....    .+.+              ...++++++.++|||||.+++.+++...
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~  373 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP  373 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            9998754321    1110              1257899999999999999998877443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.46  E-value=7.1e-13  Score=99.86  Aligned_cols=121  Identities=14%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-----h--hc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-----S--EH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~  127 (197)
                      +++.+|||+|||+|.++..+++.. +..+++++|+++.+        .       .++++++++|+.+..     .  ..
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence            456799999999999998887653 44689999999854        1       135778878865421     1  12


Q ss_pred             CCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         128 QQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      .++||+|+++++.+....+.+       .....++.+.++|+|||.+++....    ...+..++..++..|..+
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~----~~~~~~~l~~l~~~~~~~  166 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ----GEEIDEYLNELRKLFEKV  166 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc----CccHHHHHHHHHhhhceE
Confidence            467999999864321111000       0156899999999999999986422    244455566665555443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.46  E-value=7.3e-13  Score=102.87  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..++...+ ..+++++|+++.+++.+++++...  + ...+++++.+|+.+. +...++||+|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~-~~~~~~~D~I  125 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--G-LSGNVEFVQGDAEAL-PFPDNSFDAV  125 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--c-cccCeEEEecccccC-CCCCCCccEE
Confidence            3457999999999999998887654 579999999999999999987531  1 134789999998663 2335689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....+...+.    ..+++++.+.|+|||.+++..
T Consensus       126 ~~~~~l~~~~~~----~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        126 TIAFGLRNVPDI----DKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEecccccCCCH----HHHHHHHHHhccCCcEEEEEE
Confidence            987665555443    779999999999999987753

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.46  E-value=9e-13  Score=102.85  Aligned_cols=105  Identities=14%  Similarity=0.255  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------Q  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~  128 (197)
                      .++++||+||+++|+.+.++++.. +..+++++|.+++..+.|++++...  ++ .++++++.+|+.+.++..      .
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~-~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GV-AHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CC-CCceEEEeccHHHHHHHHHhccccC
Confidence            467899999999999999988753 4579999999999999999998762  33 368999999999988752      2


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++||+|+.|...      ..+ ..+++.+.++|+|||++++-
T Consensus       155 ~~fD~iFiDadK------~~Y-~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        155 GTFDFIFVDADK------DNY-INYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             CcccEEEecCCH------HHh-HHHHHHHHHhcCCCeEEEEc
Confidence            689999999842      112 67899999999999998874

>KOG4300|consensus

Probab=99.46  E-value=4.7e-13  Score=99.59  Aligned_cols=105  Identities=18%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE-EEEcchHHHHhhcCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-VHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...||++|||||..-...-. -+.+++|++|.+|.|-+.+.+.+..-    ...++. ++.+++++..+-.+++||.|++
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVVC  151 (252)
T ss_pred             ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence            35899999999987655432 35689999999999999998877642    345677 8899988865456789999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....-.-.++    .+.++++.++|+|||++++..
T Consensus       152 TlvLCSve~~----~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  152 TLVLCSVEDP----VKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EEEEeccCCH----HHHHHHHHHhcCCCcEEEEEe
Confidence            7654333333    778999999999999999864

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=1.2e-12  Score=98.19  Aligned_cols=112  Identities=23%  Similarity=0.280  Sum_probs=82.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++. + .+++++|+++++++.+++++...  +....++.++.+|..+.+.  ..+||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~--~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPFR--GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEecccccccc--ccCceEEE
Confidence            45579999999999999998877 3 79999999999999998887542  1111228888898765432  34899999


Q ss_pred             ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++++.......                 ......+++++.++|||||.+++...+
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            99875331110                 001256899999999999998886544

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.45  E-value=6.2e-14  Score=111.89  Aligned_cols=144  Identities=17%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             EEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC
Q psy4592          26 ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA  105 (197)
Q Consensus        26 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~  105 (197)
                      .+.+|--+.+.++...+.+-.+..+... ..++++|||+|||+|.++...++.+ ..+++++|+||..++.|+.|...+ 
T Consensus       131 ~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N-  207 (295)
T PF06325_consen  131 VIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN-  207 (295)
T ss_dssp             EEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT-
T ss_pred             EEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc-
Confidence            4566655555555433333333333322 3566799999999999999988875 468999999999999999997652 


Q ss_pred             CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         106 VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       106 ~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                       +.. .++.+.  ...+   ....+||+|++|...     .-+  ..+...+.++|+|||+++++..-    .+....+.
T Consensus       208 -~~~-~~~~v~--~~~~---~~~~~~dlvvANI~~-----~vL--~~l~~~~~~~l~~~G~lIlSGIl----~~~~~~v~  269 (295)
T PF06325_consen  208 -GVE-DRIEVS--LSED---LVEGKFDLVVANILA-----DVL--LELAPDIASLLKPGGYLILSGIL----EEQEDEVI  269 (295)
T ss_dssp             -T-T-TCEEES--CTSC---TCCS-EEEEEEES-H-----HHH--HHHHHHCHHHEEEEEEEEEEEEE----GGGHHHHH
T ss_pred             -CCC-eeEEEE--Eecc---cccccCCEEEECCCH-----HHH--HHHHHHHHHhhCCCCEEEEcccc----HHHHHHHH
Confidence             222 255442  1111   123789999999842     111  45777889999999999996432    34445555


Q ss_pred             HHHHh
Q psy4592         186 QHCAS  190 (197)
Q Consensus       186 ~~~~~  190 (197)
                      +.+++
T Consensus       270 ~a~~~  274 (295)
T PF06325_consen  270 EAYKQ  274 (295)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            55543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=99.45  E-value=5.5e-13  Score=102.43  Aligned_cols=102  Identities=18%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+.+|||+|||+|.++..+++..   +..+++++|+|+.+++.|+++..         +++++++|+....  ..++||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~~--~~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTTE--FDTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhccc--ccCCccE
Confidence            35699999999999999887642   24689999999999999998752         4789999986532  2468999


Q ss_pred             EEECCCCCCCCCc--------ccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAE--------SLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~--------~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ||+|||.......        .+.-..+++.+.+++++|+. ++.
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP  161 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP  161 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence            9999997542111        12235688888886666665 554

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.44  E-value=1e-12  Score=100.73  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--------CCCCCCCeEEEEcchHHHHhhc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--------VGLSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~  127 (197)
                      +++.+|||+|||.|..+..++..+  ..|+++|+++.+++.+.+......        ......++++.++|+.++....
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            355699999999999999998774  799999999999997644221100        0001347899999987643222


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .++||.|+.....+..+...  ...+++.+.++|||||.+++.+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~--R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEM--RQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCCcCEEEechhhccCCHHH--HHHHHHHHHHHcCCCCeEEEEE
Confidence            35799999876654443221  3679999999999999755553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.44  E-value=1.9e-13  Score=102.43  Aligned_cols=104  Identities=22%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.++||+|||.|..+.++++.+  ..|+++|+|+..++.+++....     .+-.++..+.|+.++..  +++||+|++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-----~~l~i~~~~~Dl~~~~~--~~~yD~I~s  100 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-----EGLDIRTRVADLNDFDF--PEEYDFIVS  100 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-----TT-TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-----cCceeEEEEecchhccc--cCCcCEEEE
Confidence            56799999999999999999885  7999999999999988776543     23358889999765322  468999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....+..+...  .+..++.+.+.++|||++++.+
T Consensus       101 t~v~~fL~~~~--~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  101 TVVFMFLQREL--RPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ESSGGGS-GGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeccCCHHH--HHHHHHHHHhhcCCcEEEEEEE
Confidence            76555544332  2789999999999999988753

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.44  E-value=2e-12  Score=86.41  Aligned_cols=102  Identities=26%  Similarity=0.375  Sum_probs=80.3

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS  139 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~  139 (197)
                      +++|+|||.|..+..+.+ ....+++++|++++.++.+++.....    ...++++..+|+.+......++||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence            589999999999988887 34579999999999999888432211    3457999999988765423578999999998


Q ss_pred             CCC-CCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         140 DPV-GPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       140 ~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .+. ...    ...+++.+.+.|+|||.+++.
T Consensus        76 ~~~~~~~----~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVED----LARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhH----HHHHHHHHHHHcCCCCEEEEE
Confidence            655 222    277899999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.44  E-value=1.2e-12  Score=101.66  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+.+..  .+++++|+++.+++.+++++...     ..++++..+|+.+......++||+|+
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~Ii  119 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEHPGQFDVVT  119 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhcCCCccEEE
Confidence            345799999999999998888763  68999999999999999876542     23578888998776544457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....+..++.    ..+++.+.+.|+|||.+++...
T Consensus       120 ~~~~l~~~~~~----~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        120 CMEMLEHVPDP----ASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EhhHhhccCCH----HHHHHHHHHHcCCCcEEEEEec
Confidence            97765555443    6789999999999999998654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.44  E-value=1e-12  Score=100.76  Aligned_cols=100  Identities=23%  Similarity=0.323  Sum_probs=77.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++++++.+++++...    ...++++..+|+.+.++ ..++||+|+
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~-~~~~fD~I~  149 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL----GLHNVSVRHGDGWKGWP-AYAPFDRIL  149 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC----CCCceEEEECCcccCCC-cCCCcCEEE
Confidence            456799999999999988777654  48999999999999999987653    23469999999755332 236899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++...+.          +.+.+.+.|+|||.+++...
T Consensus       150 ~~~~~~~----------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAAAPE----------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence            9874322          23567889999999998764

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.43  E-value=6.3e-13  Score=96.99  Aligned_cols=97  Identities=25%  Similarity=0.321  Sum_probs=74.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+.+..  .+++++|+++.+++.  .+            ......+..+ .....++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i~   83 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLII   83 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhHh
Confidence            566799999999999999887664  499999999999887  11            1111122122 233467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....++.+++    ..+++.+.++|||||++++....
T Consensus        84 ~~~~l~~~~d~----~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   84 CNDVLEHLPDP----EEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EESSGGGSSHH----HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hHHHHhhcccH----HHHHHHHHHhcCCCCEEEEEEcC
Confidence            99888777654    78999999999999999997643

...

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.42  E-value=2.2e-12  Score=99.60  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..  ..++++|+++.+++.+++++...    ...++++..+|+.+......++||+|++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            46799999999999998887754  56999999999999999876542    1126889999988765443478999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ....+...+.    ..+++++.+.|+|||.+++...
T Consensus       119 ~~~l~~~~~~----~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       119 MEVLEHVPDP----QAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             hhHHHhCCCH----HHHHHHHHHhcCCCcEEEEEec
Confidence            8765555444    6799999999999999888653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2904|consensus

Probab=99.40  E-value=6.6e-12  Score=97.24  Aligned_cols=124  Identities=19%  Similarity=0.279  Sum_probs=87.0

Q ss_pred             HHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE----cchH
Q psy4592          46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV----GDGF  121 (197)
Q Consensus        46 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~d~~  121 (197)
                      .+..+....+..+..+||+|||+|+++..+++..+.+++++||.++.++.+|.+|.+...  + ..++.+++    +|..
T Consensus       137 Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l-~g~i~v~~~~me~d~~  213 (328)
T KOG2904|consen  137 VIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--L-SGRIEVIHNIMESDAS  213 (328)
T ss_pred             HHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--h-cCceEEEecccccccc
Confidence            333333333455668999999999999999998888999999999999999999876532  1 23666663    4433


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCC-cccc---------------------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPA-ESLF---------------------QASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~-~~l~---------------------~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +..+...+++|++++|||.-...+ .++-                     -..++.-+.|.|+|||.++++..
T Consensus       214 ~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  214 DEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             cccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            222223579999999998422111 1110                     12366777899999999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=1.7e-12  Score=104.99  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+..+|||||||+|.++..+++..+..+++++|. |.+++.++++....  + ..++++++.+|+.+. +  .+.+|+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--g-l~~rv~~~~~d~~~~-~--~~~~D~v~  220 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--G-VADRMRGIAVDIYKE-S--YPEADAVL  220 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--C-ccceEEEEecCccCC-C--CCCCCEEE
Confidence            3457999999999999999998888789999998 78999999887642  1 235799999997642 1  23479998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....|...+..  ...+++++++.|+|||++++.
T Consensus       221 ~~~~lh~~~~~~--~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       221 FCRILYSANEQL--STIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             eEhhhhcCChHH--HHHHHHHHHHhcCCCCEEEEE
Confidence            766555443321  156899999999999999886

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.40  E-value=6.3e-12  Score=101.77  Aligned_cols=101  Identities=23%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++..+ ...++++|+++++++.|++++...    ..+++.++++|+.+.+.. .++||+|
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~----g~~nV~~i~gD~~~~~~~-~~~fD~I  153 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL----GIENVIFVCGDGYYGVPE-FAPYDVI  153 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCChhhcccc-cCCccEE
Confidence            4567999999999999998887654 247999999999999999987643    235789999998765443 3579999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++...+          +....+.+.|+|||.+++..
T Consensus       154 i~~~g~~----------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        154 FVTVGVD----------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence            9875321          22345678999999988854

>PRK06202 hypothetical protein; Provisional

Probab=99.39  E-value=1.9e-12  Score=100.61  Aligned_cols=103  Identities=15%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      .++.+|||+|||+|.++..+++.    ++..+++++|+++++++.|++....       .++++...++.. ++..+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~-l~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDE-LVAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccc-ccccCCCc
Confidence            45679999999999988877642    3346999999999999999887542       345666665433 23345789


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+|+++...++.++..  ..+++++++++++  |.+++.
T Consensus       131 D~V~~~~~lhh~~d~~--~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        131 DVVTSNHFLHHLDDAE--VVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             cEEEECCeeecCChHH--HHHHHHHHHHhcC--eeEEEe
Confidence            9999998887765542  1579999999998  444443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.39  E-value=5.8e-12  Score=93.33  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++..      .++++++.+|+.++.. ...+||.|+
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi   82 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVV   82 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEE
Confidence            455699999999999999998873  6999999999999999998753      3589999999987532 234699999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhh--cCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRA--LRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~--LkpgG~l~~~~  171 (197)
                      +|+|.+..       ...+..+.+.  +.++|.++++-
T Consensus        83 ~n~Py~~~-------~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       83 GNLPYNIS-------TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             ECCCcccH-------HHHHHHHHhcCCCcceEEEEEEH
Confidence            99986543       2344444432  45888888874

>KOG1271|consensus

Probab=99.38  E-value=2.7e-12  Score=93.84  Aligned_cols=113  Identities=19%  Similarity=0.310  Sum_probs=83.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +..+|||+|||+|.+...+++..-...++++|.++..+++|+.....  .++. ..++|.+.|+.+. ....++||+|.-
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--~~~~-n~I~f~q~DI~~~-~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--DGFS-NEIRFQQLDITDP-DFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--cCCC-cceeEEEeeccCC-cccccceeEEee
Confidence            34499999999999999999865335699999999999998765543  2222 3499999998763 334678999887


Q ss_pred             CCCCCC------CCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         137 DSSDPV------GPAESLFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       137 ~~~~~~------~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      ..+...      .+...+  .-++..+.++|+|||+|++.+++..
T Consensus       143 KGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~T  185 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCNFT  185 (227)
T ss_pred             cCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecCcc
Confidence            655322      122221  3478899999999999999886643

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.38  E-value=5e-12  Score=97.44  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..  .+++++|+++++++.|++++...  + ...++++.++|+.+.    .++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~--~-~~~~i~~~~~d~~~~----~~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGR--D-VAGNVEFEVNDLLSL----CGEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECChhhC----CCCcCEEE
Confidence            356799999999999999988763  68999999999999999887542  1 124799999997653    26899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....++.+...  ....++++.+++++++++.+.
T Consensus       125 ~~~~l~~~~~~~--~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       125 CMDVLIHYPASD--MAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EhhHHHhCCHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence            865543333222  156889999999877766653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.37  E-value=1.4e-12  Score=97.59  Aligned_cols=109  Identities=25%  Similarity=0.435  Sum_probs=81.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~  133 (197)
                      .+.+|||+.||+|.++.+.+.++. .+++.||.++..++..++|+...+   ...+++++..|+...+..   ...+||+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fDi  117 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFDI  117 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCceE
Confidence            567999999999999999988854 799999999999999999987542   123689999998887754   3689999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~~  173 (197)
                      |++|||......    ..+.++.+.  ..|+++|.+++....
T Consensus       118 IflDPPY~~~~~----~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  118 IFLDPPYAKGLY----YEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             EEE--STTSCHH----HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             EEECCCcccchH----HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            999998654421    155667766  899999999998644

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.37  E-value=5.8e-12  Score=96.94  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--------CCCCCCCeEEEEcchHHHHhhc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--------VGLSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~  127 (197)
                      +++.+|||+|||.|..+..++..+  .+|++||+++..++.+.+......        ......++++.++|+.++....
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            345699999999999999998764  799999999999997643211100        0012357899999987753333


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .++||+|+.....+..+...  ...+++.+.++|+|||.+++
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~--R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEM--RERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHH--HHHHHHHHHHHcCCCCeEEE
Confidence            35899999766554443221  37899999999999986444

>TIGR03438 probable methyltransferase

Probab=99.35  E-value=6.5e-12  Score=101.28  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=78.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC----c
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ----E  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~  130 (197)
                      +.+.+|||+|||+|..+..+++..+ ..+++++|+|++|++.+++++..-   ....++..+++|+.+.++....    .
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~  138 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR  138 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence            3457899999999999998887653 478999999999999998876431   0123567789998765432211    2


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..+++++...+..+...  ...+++++++.|+|||.|++-..
T Consensus       139 ~~~~~~gs~~~~~~~~e--~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       139 RLGFFPGSTIGNFTPEE--AVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             eEEEEecccccCCCHHH--HHHHHHHHHHhcCCCCEEEEecc
Confidence            33555555444433221  25799999999999999998653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.35  E-value=2.4e-11  Score=102.90  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=79.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++++++.|++++...    ...+++++++|+.+.+..   ..++||
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~fD  369 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN----GLDNVTFYHANLEEDFTDQPWALGGFD  369 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEEeChHHhhhhhhhhcCCCC
Confidence            345799999999999999988764  68999999999999999987642    224799999999876532   245799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +|++|||....       .+.++.+.+ ++|++++++..+
T Consensus       370 ~Vi~dPPr~g~-------~~~~~~l~~-~~~~~ivyvSCn  401 (443)
T PRK13168        370 KVLLDPPRAGA-------AEVMQALAK-LGPKRIVYVSCN  401 (443)
T ss_pred             EEEECcCCcCh-------HHHHHHHHh-cCCCeEEEEEeC
Confidence            99999974321       345555555 699988887643

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.35  E-value=1.8e-11  Score=92.20  Aligned_cols=107  Identities=20%  Similarity=0.164  Sum_probs=81.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~  133 (197)
                      .+.+|||++||+|.++.+++.++. ..+++||+++..++.+++++...+  . ..+++++.+|+.+++...   ...||+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~-~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--S-GEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--C-cccEEEEehhHHHHHHHhhccCCCceE
Confidence            457999999999999999998854 589999999999999999876531  1 236899999998776531   234899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~  172 (197)
                      |+.|||.....     ..+.++.+.  ..|+++|.+++...
T Consensus       125 v~~DPPy~~~~-----~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       125 IYLDPPFFNGA-----LQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             EEECcCCCCCc-----HHHHHHHHHHCCCCCCCeEEEEEec
Confidence            99999864321     144555553  47999999998753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.35  E-value=1.4e-12  Score=103.26  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             CCCeEEEEeCCchH----hHHHHhcCCC-----CccEEEEEcCHHHHHHHHhhcCC-CC-CCC-----------------
Q psy4592          57 NPKKVLIVGGGDGG----VAREVLKHPS-----VESAYLVEIDNRVIEVSKKYLPG-MA-VGL-----------------  108 (197)
Q Consensus        57 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~~~~-~~-~~~-----------------  108 (197)
                      .+.+|+|+|||+|.    ++..+.+..+     ..+|+++|+|+.+++.|++..-. .. ...                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    3444444322     36899999999999999885310 00 000                 


Q ss_pred             ----CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         109 ----SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       109 ----~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                          -..++++.++|+.+.. ...++||+|++....++.+++.  ..+.+++++++|+|||++++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~--~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPT--QRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHH--HHHHHHHHHHHhCCCeEEEEEC
Confidence                0136888889986632 2357899999976655543321  2679999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.34  E-value=2.2e-11  Score=98.84  Aligned_cols=103  Identities=14%  Similarity=0.163  Sum_probs=77.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..  .+++++|+++.+++.|+++....    .-++++++++|+.++.....++||+|++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~----~l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAEL----GLTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            45799999999999999998753  69999999999999999987653    2247999999998876543457999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |||....      ..+..+.+ ..++|++.+++..+
T Consensus       247 dPPr~G~------~~~~~~~l-~~~~~~~ivyvsc~  275 (315)
T PRK03522        247 NPPRRGI------GKELCDYL-SQMAPRFILYSSCN  275 (315)
T ss_pred             CCCCCCc------cHHHHHHH-HHcCCCeEEEEECC
Confidence            9973211      13344443 34688776666543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.34  E-value=1.3e-11  Score=97.48  Aligned_cols=141  Identities=17%  Similarity=0.239  Sum_probs=96.7

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH---HHHhhcCCCCCCCCCCCeEEEE
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE---VSKKYLPGMAVGLSDPRLTVHV  117 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~  117 (197)
                      ..|.++..+++.   -.+++|||||||+|+.+..++..++ ..|+|+|.++-..-   .+++.+..      ..++... 
T Consensus       102 ~KW~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~l-  170 (315)
T PF08003_consen  102 WKWDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFEL-  170 (315)
T ss_pred             chHHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC------CccEEEc-
Confidence            455667777653   3668999999999999999998865 68999999886543   33444321      1223333 


Q ss_pred             cchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC----------C---------CcCh
Q psy4592         118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT----------L---------WYSL  178 (197)
Q Consensus       118 ~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~----------~---------~~~~  178 (197)
                      ....+.++. .++||.|++....++..++    -..++++++.|+|||.+++.+..          |         .+-.
T Consensus       171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~P----l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi  245 (315)
T PF08003_consen  171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSP----LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI  245 (315)
T ss_pred             Ccchhhccc-cCCcCEEEEeeehhccCCH----HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence            223344555 6789999999988777666    67899999999999999987521          0         0112


Q ss_pred             hHHHHHHHHHHhh-CCcccC
Q psy4592         179 DCVGNTLQHCASV-FPRLHC  197 (197)
Q Consensus       179 ~~~~~~~~~~~~~-f~~v~~  197 (197)
                      +....+...+++. |.+|+|
T Consensus       246 Ps~~~L~~wl~r~gF~~v~~  265 (315)
T PF08003_consen  246 PSVAALKNWLERAGFKDVRC  265 (315)
T ss_pred             CCHHHHHHHHHHcCCceEEE
Confidence            4556666677655 777764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.3e-11  Score=88.86  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=74.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      -.++.|+|+|||||.++...+..++ .+++++|+||+.++.+++|....     ..++.+.++|+.++    ..++|.++
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi  113 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI  113 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence            3567899999999999988877755 79999999999999999998752     35899999997654    36799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRAL  161 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~L  161 (197)
                      +|||+..... + .+..|+..+.++-
T Consensus       114 mNPPFG~~~r-h-aDr~Fl~~Ale~s  137 (198)
T COG2263         114 MNPPFGSQRR-H-ADRPFLLKALEIS  137 (198)
T ss_pred             ECCCCccccc-c-CCHHHHHHHHHhh
Confidence            9999755411 1 2366777777664

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.32  E-value=2.1e-11  Score=94.42  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  ..++++|+++++++.|++++...+   ...++++..+|..    ...++||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~----~~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDLE----SLLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCch----hccCCcCEEE
Confidence            455799999999999999988764  569999999999999999875421   1147899999942    2346899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      +....++.+...  ....++.+.+.+++++++.
T Consensus       133 ~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        133 CLDVLIHYPQED--AARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             EcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence            877654433322  1567788888775555444

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.32  E-value=6.7e-11  Score=95.60  Aligned_cols=104  Identities=11%  Similarity=0.059  Sum_probs=72.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|++++|++.++++.+.... .....++++..+|+.+.    .++||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence            45799999999999999988763  6899999999999999988653110 01134688899996542    47899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +....++.++...  ..+++.+.+ +.++|.++.
T Consensus       218 ~~~vL~H~p~~~~--~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        218 CLDVLIHYPQDKA--DGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EcCEEEecCHHHH--HHHHHHHHh-hcCCEEEEE
Confidence            8765443333211  346666665 456666553

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.31  E-value=1.3e-11  Score=91.78  Aligned_cols=98  Identities=22%  Similarity=0.212  Sum_probs=75.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      +++.+|||+|||.|.+...+.+. ..++..|+|++++.+..+.++           .+.++++|+.+.+.. ++++||.|
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V   79 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV   79 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence            56689999999999999888776 458999999999988777663           467999999998874 68899999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |++-+.....++    ++.++++.|+   |...++...
T Consensus        80 IlsqtLQ~~~~P----~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   80 ILSQTLQAVRRP----DEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             ehHhHHHhHhHH----HHHHHHHHHh---cCeEEEEec
Confidence            998766554444    5677777655   555665543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.30  E-value=7.7e-11  Score=101.16  Aligned_cols=115  Identities=14%  Similarity=0.061  Sum_probs=92.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      .+...+||||||.|.+...+++..|...+.|+|+....+..+.+.....    +..|+.++..|+...... ..++.|.|
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence            3456999999999999999999888899999999988777665543321    335788999987654433 35789999


Q ss_pred             EECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         135 ITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      +.+.|+||.    ...++.++.|++.+.+.|+|||.+.+.+...
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~  465 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE  465 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            999999995    3456788999999999999999999987653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.29  E-value=4.9e-11  Score=98.94  Aligned_cols=102  Identities=14%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..++...  .++++||+++.+++.|+++....    ..++++++.+|+.+++.....+||+|++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQML----GLDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            34699999999999999988653  68999999999999999987653    2247999999998876543356999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |||.. +    + ..++++.+. .++|++.+++..
T Consensus       307 DPPr~-G----~-~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       307 NPPRR-G----I-GKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCCC-C----C-cHHHHHHHH-hcCCCeEEEEEe
Confidence            99842 1    1 145666665 479998888754

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1541|consensus

Probab=99.29  E-value=4.4e-11  Score=90.01  Aligned_cols=105  Identities=15%  Similarity=0.068  Sum_probs=78.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.-|||||||+|-.+..+...+  ...+++||||.|++.|.+.  ..    .   -.++.+|.-+.+++.+++||.+|+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~--e~----e---gdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER--EL----E---GDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh--hh----h---cCeeeeecCCCCCCCCCccceEEE
Confidence            46799999999998877766554  7899999999999999872  11    1   346777877888888899999988


Q ss_pred             CCCCCC-------CCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPV-------GPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~-------~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      -.+..|       ..++..--..||..++.+|++|+..+++..
T Consensus       119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence            543322       122211114589999999999999999863

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.29  E-value=6.8e-11  Score=87.75  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=86.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc--eeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE--FDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~D~  133 (197)
                      -.+.++||+-+|+|+++.+.+.++. ..++.||.|.......++|....+   ...+.+++..|+..+++....+  ||+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccE
Confidence            3567999999999999999998854 799999999999999999977542   1358999999999877765444  999


Q ss_pred             EEECCCCCCCCCcccccHHHHHH--HHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFEL--MSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~--~~~~LkpgG~l~~~~~~  173 (197)
                      |+.|||.+.....   ....+..  -...|+|+|.+++....
T Consensus       118 VflDPPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         118 VFLDPPYAKGLLD---KELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             EEeCCCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            9999998743221   0222222  35779999999998644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.27  E-value=2.5e-10  Score=96.70  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=97.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|+|.|+-+.+++... ....++++|+++.-++.+++++..+    .-.++.+...|+..+.......||.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----G~~nv~v~~~D~~~~~~~~~~~fD~I  187 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----GVSNVALTHFDGRVFGAALPETFDAI  187 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCchhhhhhhchhhcCeE
Confidence            466899999999999999988654 3358999999999999999988764    33578899999876543334679999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++|+|....    .++..              ...+++..+.+.|||||+++..+++..  .+..+.+...+-+.+|+
T Consensus       188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~--~eENE~vV~~~L~~~~~  263 (470)
T PRK11933        188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN--REENQAVCLWLKETYPD  263 (470)
T ss_pred             EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC--HHHHHHHHHHHHHHCCC
Confidence            999986542    11100              125688999999999999988877643  34445555555444443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.26  E-value=3.6e-10  Score=95.50  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++++++.|++++...    ...+++++.+|+.+.++.   ...+||
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~----~~~nv~~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN----GIANVEFLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh----CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence            345799999999999999988764  58999999999999999987653    235799999999886543   235799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|++|+|...     + ..++++.+.+ ++|++.+++.
T Consensus       365 ~vi~dPPr~G-----~-~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       365 VLLLDPPRKG-----C-AAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             EEEECcCCCC-----C-CHHHHHHHHh-cCCCEEEEEc
Confidence            9999997421     1 1567776654 8998876664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2899|consensus

Probab=99.26  E-value=5.4e-11  Score=90.69  Aligned_cols=132  Identities=23%  Similarity=0.265  Sum_probs=87.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCC-----------------------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDP-----------------------  111 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~-----------------------  111 (197)
                      ..++.+|||||-+|.++..+++..+...+.|+|||+..+..|+++++..... ..-.                       
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            3578999999999999999999877778999999999999999986543100 0000                       


Q ss_pred             -------CeEEE----EcchHHHHhhcCCceeEEEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         112 -------RLTVH----VGDGFRFMSEHQQEFDVIITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       112 -------~~~~~----~~d~~~~~~~~~~~~D~I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                             ++.+.    ..+-.+++......||+|++-....|.    .+..+  ..||+.+.++|.|||+|++. ..+|.
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvE-PQpWk  213 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVE-PQPWK  213 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEc-CCchH
Confidence                   11111    111123444446789999986544332    23333  57999999999999999985 34565


Q ss_pred             ChhHHHHHHHHHHh
Q psy4592         177 SLDCVGNTLQHCAS  190 (197)
Q Consensus       177 ~~~~~~~~~~~~~~  190 (197)
                      .........+.+..
T Consensus       214 sY~kaar~~e~~~~  227 (288)
T KOG2899|consen  214 SYKKAARRSEKLAA  227 (288)
T ss_pred             HHHHHHHHHHHhhc
Confidence            44444444444443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.25  E-value=3.2e-11  Score=91.28  Aligned_cols=139  Identities=19%  Similarity=0.272  Sum_probs=86.7

Q ss_pred             eeecCCCC---CCCCCcEEEEc-CeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEE
Q psy4592          12 PFYPSSSN---RKEFGTALILD-GIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLV   87 (197)
Q Consensus        12 ~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~v   87 (197)
                      +|..+...   .+++|-.+.+| ..+.++++....-.++...     ..++..|+|+.||-|.++..+++..+...|+++
T Consensus        57 ~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~-----v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~  131 (200)
T PF02475_consen   57 VLAGEPRTETIHKENGIRFKVDLSKVYFSPRLSTERRRIANL-----VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAV  131 (200)
T ss_dssp             EEEES--SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEE
T ss_pred             EEeCCCceEEEEEeCCEEEEEccceEEEccccHHHHHHHHhc-----CCcceEEEEccCCccHHHHHHhhhcCccEEEEe
Confidence            45554422   55666666666 2233333322111222221     256789999999999999999985555789999


Q ss_pred             EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592          88 EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV  167 (197)
Q Consensus        88 e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l  167 (197)
                      |++|..++.++++....  ... .++.++.+|++++++  ...||.|+++.|..        +.+|+..+.+++++||++
T Consensus       132 d~Np~a~~~L~~Ni~lN--kv~-~~i~~~~~D~~~~~~--~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  132 DLNPDAVEYLKENIRLN--KVE-NRIEVINGDAREFLP--EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             ES-HHHHHHHHHHHHHT--T-T-TTEEEEES-GGG-----TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHc--CCC-CeEEEEcCCHHHhcC--ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEE
Confidence            99999999999987653  223 579999999999877  57899999988521        145889999999999987


Q ss_pred             E
Q psy4592         168 C  168 (197)
Q Consensus       168 ~  168 (197)
                      -
T Consensus       199 h  199 (200)
T PF02475_consen  199 H  199 (200)
T ss_dssp             E
T ss_pred             E
Confidence            4

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.23  E-value=7.3e-11  Score=89.32  Aligned_cols=91  Identities=21%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~  135 (197)
                      ++.+|||+|||+|.++..+++..+ ..++++|+++++++.+++.           +++++++|+.+.++ ...++||+|+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~Vi   80 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYVI   80 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEEE
Confidence            456999999999999988876543 6789999999999888641           35778888866432 3356899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRP  163 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkp  163 (197)
                      ++.+.++.++.    ..+++++.+.+++
T Consensus        81 ~~~~l~~~~d~----~~~l~e~~r~~~~  104 (194)
T TIGR02081        81 LSQTLQATRNP----EEILDEMLRVGRH  104 (194)
T ss_pred             EhhHhHcCcCH----HHHHHHHHHhCCe
Confidence            99887766554    6788888877664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3010|consensus

Probab=99.22  E-value=4.3e-11  Score=91.22  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      +.++|+|||+|..++.++...  .+|+++|++++|++.|++..+..   +......+...+..+++. ..++.|+|++.-
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v~L~g-~e~SVDlI~~Aq  108 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMVDLLG-GEESVDLITAAQ  108 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc---cccCCccccccccccccC-CCcceeeehhhh
Confidence            489999999997777777664  69999999999999999875431   112223333344333322 267999999998


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCc-EEEEEcCC
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGG-IVCSQAGT  173 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG-~l~~~~~~  173 (197)
                      +.||...     ++|+++++++||++| .+.++...
T Consensus       109 a~HWFdl-----e~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  109 AVHWFDL-----ERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hHHhhch-----HHHHHHHHHHcCCCCCEEEEEEcc
Confidence            8888744     679999999999988 77777644

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.22  E-value=1.1e-10  Score=96.69  Aligned_cols=101  Identities=25%  Similarity=0.325  Sum_probs=82.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      ..+|||++||+|..+..+++..+...|+++|++++.++.+++|+...    +-.++++.++|+.+++.. .++||+|++|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N----~~~~~~v~~~Da~~~l~~-~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN----GLENEKVFNKDANALLHE-ERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence            35899999999999999887655568999999999999999998653    224577999999887753 4679999999


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+   +. +    ..+++.+.+.+++||++++..
T Consensus       133 P~---Gs-~----~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        133 PF---GS-P----APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             CC---CC-c----HHHHHHHHHHhcCCCEEEEEe
Confidence            96   21 1    468888888899999999974

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.22  E-value=2.7e-11  Score=91.62  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=78.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...++||+|+|-|.++..++... ..+|+.||..+..++.|++++..-    .....++.+.-..++.+. ..+||+|++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P~-~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTPE-EGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccCC-CCcEeEEEe
Confidence            34699999999999999877654 379999999999999999887531    223567888888777654 469999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+...+..+..+  .+||+.+++.|+|+|++++--
T Consensus       129 QW~lghLTD~dl--v~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  129 QWCLGHLTDEDL--VAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             ES-GGGS-HHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhccCCHHHH--HHHHHHHHHhCcCCcEEEEEe
Confidence            998766666554  579999999999999999864

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.21  E-value=7.1e-12  Score=94.79  Aligned_cols=101  Identities=21%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~~  136 (197)
                      -+++||+|||||-.+..+...-  .++++||||++|++.|...--         -=.+.++|+..+++ ...++||+|+.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence            4799999999999888877654  689999999999999977521         12356678877776 35789999997


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .-..++...-    +.++..+...|+|||.|.+++..
T Consensus       195 aDVl~YlG~L----e~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         195 ADVLPYLGAL----EGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             hhHHHhhcch----hhHHHHHHHhcCCCceEEEEecc
Confidence            5444443322    66889999999999999998754

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.20  E-value=1.6e-10  Score=93.32  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh---cCCcee
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE---HQQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~---~~~~~D  132 (197)
                      ...++||||||+|.+...++...+..+++++|+|+..++.|++++... .++ ..++++.. .|.......   ..++||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-PGL-NGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-cCC-cCcEEEEEccchhhhhhcccccCCceE
Confidence            457999999999988877766545589999999999999999998752 012 24677754 444333321   256899


Q ss_pred             EEEECCCCCCC
Q psy4592         133 VIITDSSDPVG  143 (197)
Q Consensus       133 ~I~~~~~~~~~  143 (197)
                      +|++|||++..
T Consensus       192 livcNPPf~~s  202 (321)
T PRK11727        192 ATLCNPPFHAS  202 (321)
T ss_pred             EEEeCCCCcCc
Confidence            99999998765

>KOG3191|consensus

Probab=99.20  E-value=3.7e-10  Score=82.66  Aligned_cols=123  Identities=15%  Similarity=0.163  Sum_probs=91.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++..++|||||+|..+..+.+. .+.....+.|++|..++..++....     +.-+++.++.|....+..  ++.|++
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-----n~~~~~~V~tdl~~~l~~--~~VDvL  114 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-----NRVHIDVVRTDLLSGLRN--ESVDVL  114 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-----cCCccceeehhHHhhhcc--CCccEE
Confidence            45789999999999999888864 4567889999999999988776654     345688999998887765  899999


Q ss_pred             EECCCC-CCCCC----------------cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         135 ITDSSD-PVGPA----------------ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       135 ~~~~~~-~~~~~----------------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      +.|+|. +....                ..-.++.++.++-.+|.|.|++++....    ....+++++.++
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~----~N~p~ei~k~l~  182 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR----ANKPKEILKILE  182 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh----hcCHHHHHHHHh
Confidence            999974 22211                1112467888899999999999997644    233345555443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.19  E-value=6.6e-10  Score=91.46  Aligned_cols=99  Identities=11%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---------C
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---------Q  128 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------~  128 (197)
                      +.+|||+|||+|.++..+++..  .++++||+++++++.|++++...    +..+++++.+|+.++++..         .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN----NIDNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence            3479999999999999888764  58999999999999999997652    2247999999999877631         1


Q ss_pred             ------CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 ------QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ------~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                            .+||+|+.|||- .+..     ++.++.+.+   |++++++..
T Consensus       272 ~~~~~~~~~d~v~lDPPR-~G~~-----~~~l~~l~~---~~~ivYvsC  311 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPR-AGLD-----PDTCKLVQA---YERILYISC  311 (353)
T ss_pred             ccccccCCCCEEEECCCC-CCCc-----HHHHHHHHc---CCcEEEEEc
Confidence                  248999999983 3221     455555544   777777754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.19  E-value=5.1e-10  Score=88.39  Aligned_cols=101  Identities=19%  Similarity=0.422  Sum_probs=74.4

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      ++.+|..+.+|         ......+...+.   ..++.+|||||||+|.++..+++..  .+++++|+++.+++.+++
T Consensus         4 ~k~~GQnfl~d---------~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~   69 (258)
T PRK14896          4 NKKLGQHFLID---------DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRD   69 (258)
T ss_pred             CCcCCccccCC---------HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence            34577776655         222234443332   2356799999999999999999873  689999999999999998


Q ss_pred             hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592         100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      ++..      .++++++++|+.+. +.  ..||.|++|+|.+..
T Consensus        70 ~~~~------~~~v~ii~~D~~~~-~~--~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         70 DEIA------AGNVEIIEGDALKV-DL--PEFNKVVSNLPYQIS  104 (258)
T ss_pred             Hhcc------CCCEEEEEeccccC-Cc--hhceEEEEcCCcccC
Confidence            8752      35899999998763 22  358999999986543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.19  E-value=4.1e-10  Score=93.05  Aligned_cols=98  Identities=12%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----------
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----------  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------  127 (197)
                      .+|||++||+|.++..+++..  .++++||+++.+++.+++|+...    ...+++++.+|+.++++..           
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~  281 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN----GIDNVQIIRMSAEEFTQAMNGVREFNRLKG  281 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh----CCCcEEEEECCHHHHHHHHhhccccccccc
Confidence            579999999999999888764  58999999999999999987642    2247999999999876531           


Q ss_pred             ----CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 ----QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 ----~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                          ..+||+|++|||- .+.     .++.++.+.+   |++++++..
T Consensus       282 ~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvSC  320 (362)
T PRK05031        282 IDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYISC  320 (362)
T ss_pred             ccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEEe
Confidence                1258999999984 221     1455565554   677766643

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.15  E-value=4.2e-10  Score=90.24  Aligned_cols=104  Identities=21%  Similarity=0.365  Sum_probs=75.2

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      ++.+|+.++.|         ......++....   ..++.+|||||||+|.++..+++..  .+++++|+|+.+++.+++
T Consensus        11 kk~~GQnFL~d---------~~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~   76 (294)
T PTZ00338         11 NKKFGQHILKN---------PLVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKK   76 (294)
T ss_pred             CCCCCccccCC---------HHHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHH
Confidence            44567666555         222334443332   2455799999999999999988764  589999999999999998


Q ss_pred             hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592         100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      ++...  + ..++++++.+|+.+..   ..+||.|++|+|..+.
T Consensus        77 ~~~~~--~-~~~~v~ii~~Dal~~~---~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         77 RFQNS--P-LASKLEVIEGDALKTE---FPYFDVCVANVPYQIS  114 (294)
T ss_pred             HHHhc--C-CCCcEEEEECCHhhhc---ccccCEEEecCCcccC
Confidence            87532  1 1358999999987632   2468999999987655

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=3.8e-10  Score=86.88  Aligned_cols=112  Identities=12%  Similarity=0.033  Sum_probs=82.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC--------CCCCCCCCeEEEEcchHHHHh--
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM--------AVGLSDPRLTVHVGDGFRFMS--  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~--  125 (197)
                      .++.+||+.|||.|.-+.+++..+  .+|+++|+++..++.+.+.....        .......++++.++|+.++-.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            355799999999999999998875  68999999999999876632110        000123579999999887532  


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...++||+|+--.+....+..  ...++.+.+.++|+|||.+++.+
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEEEE
Confidence            123589999987766555432  24789999999999999877765

>KOG1663|consensus

Probab=99.14  E-value=9.6e-10  Score=83.46  Aligned_cols=105  Identities=25%  Similarity=0.356  Sum_probs=83.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----cCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----HQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~  129 (197)
                      .+++++||||.-||+.+..++... +..+++++|++++..+.+......  .+ -..+++++++++.+.++.     ..+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~--ag-v~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL--AG-VDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh--cc-ccceeeeeecchhhhHHHHHhcCCCC
Confidence            477899999999999888877643 457999999999999998776543  22 346899999999988765     256


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||++|.|...   .   .+ ..+++++.+++|+||++++.
T Consensus       149 tfDfaFvDadK---~---nY-~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  149 TFDFAFVDADK---D---NY-SNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             ceeEEEEccch---H---HH-HHHHHHHHhhcccccEEEEe
Confidence            99999999842   1   12 47899999999999999885

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.12  E-value=1.3e-09  Score=86.79  Aligned_cols=78  Identities=18%  Similarity=0.286  Sum_probs=61.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+|+++++.+++++.       .++++++++|+.+. +...-.+|.|+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~-~~~~~~~~~vv  110 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKV-DLSELQPLKVV  110 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcC-CHHHcCcceEE
Confidence            456799999999999999998875  399999999999999988763       25899999998764 22111259999


Q ss_pred             ECCCCCCC
Q psy4592         136 TDSSDPVG  143 (197)
Q Consensus       136 ~~~~~~~~  143 (197)
                      +|+|....
T Consensus       111 ~NlPY~is  118 (272)
T PRK00274        111 ANLPYNIT  118 (272)
T ss_pred             EeCCccch
Confidence            99985443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.11  E-value=1.1e-09  Score=86.33  Aligned_cols=76  Identities=26%  Similarity=0.397  Sum_probs=61.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee---
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD---  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D---  132 (197)
                      .++.+|||+|||+|.++..+++..  ..++++|+|+.+++.+++++..      .++++++.+|+.+...   .++|   
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~   96 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL   96 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence            456799999999999999999876  4699999999999999987642      3589999999876322   2466   


Q ss_pred             EEEECCCCCC
Q psy4592         133 VIITDSSDPV  142 (197)
Q Consensus       133 ~I~~~~~~~~  142 (197)
                      .|++|+|.+.
T Consensus        97 ~vvsNlPy~i  106 (253)
T TIGR00755        97 KVVSNLPYNI  106 (253)
T ss_pred             eEEEcCChhh
Confidence            9999987543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.11  E-value=3.7e-10  Score=91.00  Aligned_cols=119  Identities=22%  Similarity=0.200  Sum_probs=89.4

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFR  122 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~  122 (197)
                      .+.+..++..  +.+..|||--||||++..++...+  .+++|+|++..|++-|+.|+..-    .-....+... |+..
T Consensus       186 AR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y----~i~~~~~~~~~Da~~  257 (347)
T COG1041         186 ARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYY----GIEDYPVLKVLDATN  257 (347)
T ss_pred             HHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhh----CcCceeEEEeccccc
Confidence            4445444433  667799999999999999887664  79999999999999999998753    2234555555 8766


Q ss_pred             HHhhcCCceeEEEECCCCCCCC----C--cccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGP----A--ESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~----~--~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                       ++....++|.|+.|||.....    .  ..|+ .++++.+.++|++||++++.+.
T Consensus       258 -lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         258 -LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHHHHHHhhcCcEEEEecC
Confidence             445445799999999864431    1  2233 7799999999999999999764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=3.3e-09  Score=85.95  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=112.2

Q ss_pred             ceeeeeeec--eeecCC-CC--CCCCCcEEEEc-CeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHh
Q psy4592           3 VSLSLQVEE--PFYPSS-SN--RKEFGTALILD-GIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVL   76 (197)
Q Consensus         3 ~~~~~~~~~--~~~~~~-~~--~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~   76 (197)
                      +..++++.+  +|+.+. ++  .+++|-.+.+| ..++++++....-.++....     ..+.+|+|+-+|-|.++..++
T Consensus       133 v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v-----~~GE~V~DmFAGVGpfsi~~A  207 (341)
T COG2520         133 VAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELV-----KEGETVLDMFAGVGPFSIPIA  207 (341)
T ss_pred             cCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhh-----cCCCEEEEccCCcccchhhhh
Confidence            334444443  666666 33  77888667777 45666655533323333222     457899999999999999999


Q ss_pred             cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHH
Q psy4592          77 KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFEL  156 (197)
Q Consensus        77 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~  156 (197)
                      +.... .|+++|+||..++.+++|+..+  .. ...++.+++|+++..+.. ..+|-|+++.+.    .    +.+|+..
T Consensus       208 k~g~~-~V~A~diNP~A~~~L~eNi~LN--~v-~~~v~~i~gD~rev~~~~-~~aDrIim~~p~----~----a~~fl~~  274 (341)
T COG2520         208 KKGRP-KVYAIDINPDAVEYLKENIRLN--KV-EGRVEPILGDAREVAPEL-GVADRIIMGLPK----S----AHEFLPL  274 (341)
T ss_pred             hcCCc-eEEEEecCHHHHHHHHHHHHhc--Cc-cceeeEEeccHHHhhhcc-ccCCEEEeCCCC----c----chhhHHH
Confidence            88653 4999999999999999998763  22 235899999999876653 789999998863    1    2568899


Q ss_pred             HHhhcCCCcEEEEEcCCC
Q psy4592         157 MSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       157 ~~~~LkpgG~l~~~~~~~  174 (197)
                      +.+.+++||.+-++...+
T Consensus       275 A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         275 ALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             HHHHhhcCcEEEEEeccc
Confidence            999999999998876543

>KOG1661|consensus

Probab=99.10  E-value=3e-10  Score=84.94  Aligned_cols=121  Identities=22%  Similarity=0.253  Sum_probs=87.4

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCC------CCCCCC
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMA------VGLSDP  111 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~~~  111 (197)
                      ...|..++..+.... .++.+.||+|+|+|+++..++..  .+.....+||.-|+.++.+++++..+-      ..++..
T Consensus        66 p~mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   66 PHMHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             hHHHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            445555555554211 46689999999999999887742  222344899999999999999876542      123456


Q ss_pred             CeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         112 RLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       112 ~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++.++.+|.+...+. ..+||.|++.+..          .+.-+.+.+.|++||.+++...
T Consensus       145 ~l~ivvGDgr~g~~e-~a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  145 ELSIVVGDGRKGYAE-QAPYDAIHVGAAA----------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             ceEEEeCCccccCCc-cCCcceEEEccCc----------cccHHHHHHhhccCCeEEEeec
Confidence            789999999876554 5799999998643          2233777889999999998654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.09  E-value=3.6e-10  Score=86.91  Aligned_cols=110  Identities=23%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC-CC----CC---CCCCCeEEEEcchHHHHhhc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG-MA----VG---LSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~-~~----~~---~~~~~~~~~~~d~~~~~~~~  127 (197)
                      +.+.+||+.|||.|.-...++..+  .+|+|+|+++..++.+.+.... ..    ..   ....++++.++|..++-+..
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            455699999999999999999874  7999999999999988432111 00    00   12347899999987744433


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .++||+|+--.+....+..  ..+++.+.+.++|+|||.+++
T Consensus       114 ~g~fD~iyDr~~l~Alpp~--~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCALPPE--MRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             HHSEEEEEECSSTTTS-GG--GHHHHHHHHHHCEEEEEEEEE
T ss_pred             cCCceEEEEecccccCCHH--HHHHHHHHHHHHhCCCCcEEE
Confidence            4589999988776665432  248899999999999999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.07  E-value=1.6e-09  Score=89.58  Aligned_cols=101  Identities=18%  Similarity=0.168  Sum_probs=84.5

Q ss_pred             CeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      .+|||+.||+|..+..+++.. +...|+++|++|+.++.+++|...+    ...++++.++|+..++.....+||+|+.|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N----~~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN----SVENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            589999999999999988763 4468999999999999999998653    22468999999999887655689999999


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+  ..+      ..+++.+.+.++++|.+.+..
T Consensus       122 Pf--Gs~------~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 PF--GTP------APFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CC--CCc------HHHHHHHHHhcccCCEEEEEe
Confidence            94  221      469999999999999999984

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.05  E-value=8.1e-09  Score=74.71  Aligned_cols=108  Identities=21%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---hh-cCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---SE-HQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~~  130 (197)
                      ..+.-||++|.|||-++.+++++ .+...+++||.+++......+.++         .++++.+|+...-   .. .+..
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~  117 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQF  117 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCe
Confidence            56679999999999999998875 345799999999999998888764         4568999987643   12 3668


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ||.|++..|.-..+...  +-+.++++...|.+||.++.-...|
T Consensus       118 ~D~viS~lPll~~P~~~--~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         118 FDSVISGLPLLNFPMHR--RIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             eeeEEeccccccCcHHH--HHHHHHHHHHhcCCCCeEEEEEecC
Confidence            99999998764443321  3679999999999999998876554

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.6e-09  Score=84.57  Aligned_cols=103  Identities=21%  Similarity=0.327  Sum_probs=76.6

Q ss_pred             CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      +.+|+++.+|..         ....+......   .++..|||||+|.|.++..+++..  ..+++||+|+.+++..++.
T Consensus         6 K~~GQnFL~d~~---------v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~   71 (259)
T COG0030           6 KRLGQNFLIDKN---------VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKER   71 (259)
T ss_pred             CCcccccccCHH---------HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHh
Confidence            557877766622         23444443332   346799999999999999999886  5799999999999999988


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      +..      .++++++++|+...-...-..++.|++|.|...+
T Consensus        72 ~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Is  108 (259)
T COG0030          72 FAP------YDNLTVINGDALKFDFPSLAQPYKVVANLPYNIS  108 (259)
T ss_pred             ccc------ccceEEEeCchhcCcchhhcCCCEEEEcCCCccc
Confidence            752      4689999999876422211168999999987665

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.04  E-value=5.4e-10  Score=83.54  Aligned_cols=111  Identities=16%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCcc---------EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVES---------AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~---------v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      .+++..|||--||+|.+..+.+.......         +.++|+++++++.|++|+...  +. ...+.+.+.|+.+.. 
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~-~~~i~~~~~D~~~l~-  101 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GV-EDYIDFIQWDARELP-  101 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T--CGGEEEEE--GGGGG-
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--cc-CCceEEEecchhhcc-
Confidence            35667999999999999988765433344         899999999999999997642  22 246899999988754 


Q ss_pred             hcCCceeEEEECCCCCCCCC-----cccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         126 EHQQEFDVIITDSSDPVGPA-----ESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~-----~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ...+++|.|++|+|......     ..++ .++++++.++|++..++++.
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHHHHCHSTTCEEEEEE
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHHHHHHCCCCEEEEEE
Confidence            44578999999998654311     2233 56889999999995555553

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2361|consensus

Probab=99.01  E-value=4.9e-10  Score=85.53  Aligned_cols=107  Identities=23%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hh--cCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SE--HQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~~  131 (197)
                      .+.+||++|||.|....-+++..+.  ..+.++|.+|..++..+++...     +..++...+.|+...- ..  ..+++
T Consensus        71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv  145 (264)
T KOG2361|consen   71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV  145 (264)
T ss_pred             ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence            3448999999999988888876555  7999999999999999998653     4456666666654321 21  35789


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+|++-......++..  ....+++++++|||||.+++-
T Consensus       146 D~it~IFvLSAi~pek--~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEK--MQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             ceEEEEEEEeccChHH--HHHHHHHHHHHhCCCcEEEEe
Confidence            9998866554433322  167899999999999999985

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=8.6e-10  Score=86.19  Aligned_cols=99  Identities=25%  Similarity=0.262  Sum_probs=78.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|+|||+|.|.++..+++..|..+++..|+ |.+++.+++  .        ++++++.+|..   ...+. +|+|+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~--------~rv~~~~gd~f---~~~P~-~D~~~  163 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--A--------DRVEFVPGDFF---DPLPV-ADVYL  163 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--T--------TTEEEEES-TT---TCCSS-ESEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--c--------cccccccccHH---hhhcc-cccee
Confidence            4557999999999999999999888899999999 889988888  1        48999999975   22233 99999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCC--cEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPG--GIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg--G~l~~~~  171 (197)
                      +....|..++..  ...+++++++.|+||  |++++.-
T Consensus       164 l~~vLh~~~d~~--~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  164 LRHVLHDWSDED--CVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EESSGGGS-HHH--HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eehhhhhcchHH--HHHHHHHHHHHhCCCCCCeEEEEe
Confidence            988877765543  267999999999999  9988864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.99  E-value=2.4e-09  Score=80.67  Aligned_cols=133  Identities=16%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh----hcCCceeEEE
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----EHQQEFDVII  135 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~D~I~  135 (197)
                      +|||||+|||..+.+.+...+..+..--|.++......+.+....+...-.+.+.+-..+....+.    ...++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            699999999999999999888788888899988876665554321100011223332222111111    1246899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC---CcChhHHHHHHHHHHhhCCc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL---WYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~~~~~~~f~~  194 (197)
                      +-...|+.+-..  .+.+|+.+.++|++||.|+++..-.   .+..+....+-..+++.-|.
T Consensus       108 ~~N~lHI~p~~~--~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~  167 (204)
T PF06080_consen  108 CINMLHISPWSA--VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE  167 (204)
T ss_pred             ehhHHHhcCHHH--HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC
Confidence            988888876543  3789999999999999999986321   23456777777888776554

The function of this family is unknown.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.1e-08  Score=84.36  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I  134 (197)
                      ...++||+-||.|.++..+++..  .+|+++|++++.++.|+++...+    ...|++++.+|++++....  ...+|.|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n----~i~N~~f~~~~ae~~~~~~~~~~~~d~V  366 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAAN----GIDNVEFIAGDAEEFTPAWWEGYKPDVV  366 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEeCCHHHHhhhccccCCCCEE
Confidence            44789999999999999998664  79999999999999999998763    3356999999999987764  3578999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.|||-....      +++++.+.+ ++|..+++++.+.
T Consensus       367 vvDPPR~G~~------~~~lk~l~~-~~p~~IvYVSCNP  398 (432)
T COG2265         367 VVDPPRAGAD------REVLKQLAK-LKPKRIVYVSCNP  398 (432)
T ss_pred             EECCCCCCCC------HHHHHHHHh-cCCCcEEEEeCCH
Confidence            9999743331      456666554 5888888876443

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=9.6e-09  Score=84.62  Aligned_cols=118  Identities=16%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCc
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~  130 (197)
                      ..++.+|||++++.|+=+.+++....+  ..|+++|+++.-++..++++...    ...++.+.+.|+.......  .++
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl----G~~nv~~~~~d~~~~~~~~~~~~~  229 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL----GVRNVIVVNKDARRLAELLPGGEK  229 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc----CCCceEEEecccccccccccccCc
Confidence            455689999999999999888876543  45699999999999999988765    3456788888876543332  236


Q ss_pred             eeEEEECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         131 FDVIITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       131 ~D~I~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ||.|++|+|....    .++..              ++.++++.+.+.|||||.++..+++...
T Consensus       230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            9999999986442    11111              1356899999999999999999887544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.99  E-value=1.4e-09  Score=79.85  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             EEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCC
Q psy4592          85 YLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPG  164 (197)
Q Consensus        85 ~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg  164 (197)
                      +++|+|++|++.|+++.+..... ...+++++++|+.+ ++..+++||+|++....++.++.    .+++++++++||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~----~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDR----LRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCH----HHHHHHHHHHcCcC
Confidence            48999999999998765421000 12479999999876 45556789999998766665554    78999999999999


Q ss_pred             cEEEEEc
Q psy4592         165 GIVCSQA  171 (197)
Q Consensus       165 G~l~~~~  171 (197)
                      |.+++..
T Consensus        75 G~l~i~d   81 (160)
T PLN02232         75 SRVSILD   81 (160)
T ss_pred             eEEEEEE
Confidence            9998764

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.98  E-value=1.5e-09  Score=80.65  Aligned_cols=126  Identities=20%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--h-hcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--S-EHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~~~D  132 (197)
                      .++++|||||||+|..+..+++..+..+|+..|.++ .++.++.|...+.. ....++++...|..+..  . ....+||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence            456799999999999988888774557999999999 99999998765311 12356777776543322  1 1245899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +|+..=..+..   .. -+.+++.+.++|+++|.+++...   .+.+..+.+++.+++
T Consensus       122 ~IlasDv~Y~~---~~-~~~L~~tl~~ll~~~~~vl~~~~---~R~~~~~~F~~~~~k  172 (173)
T PF10294_consen  122 VILASDVLYDE---EL-FEPLVRTLKRLLKPNGKVLLAYK---RRRKSEQEFFDRLKK  172 (173)
T ss_dssp             EEEEES--S-G---GG-HHHHHHHHHHHBTT-TTEEEEEE----S-TGGCHHHHHH--
T ss_pred             EEEEecccchH---HH-HHHHHHHHHHHhCCCCEEEEEeC---EecHHHHHHHHHhhh
Confidence            99984433222   22 27799999999999999666432   223334555555544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.94  E-value=1.9e-09  Score=91.11  Aligned_cols=107  Identities=25%  Similarity=0.366  Sum_probs=72.9

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC----CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP----SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+.|+|+|||+|-+....++..    ...+|++||.++.+...+++....  ++. .++++++++|++++-.  ++++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--n~w-~~~V~vi~~d~r~v~l--pekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--NGW-GDKVTVIHGDMREVEL--PEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--TTT-TTTEEEEES-TTTSCH--SS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--cCC-CCeEEEEeCcccCCCC--CCceeE
Confidence            4689999999999987665543    347999999999877666543221  111 3589999999887533  369999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ||+-.....+.+. + .++.+..+.+.|||||.++=+.
T Consensus       262 IVSElLGsfg~nE-l-~pE~Lda~~rfLkp~Gi~IP~~  297 (448)
T PF05185_consen  262 IVSELLGSFGDNE-L-SPECLDAADRFLKPDGIMIPSS  297 (448)
T ss_dssp             EEE---BTTBTTT-S-HHHHHHHGGGGEEEEEEEESSE
T ss_pred             EEEeccCCccccc-c-CHHHHHHHHhhcCCCCEEeCcc
Confidence            9998875444333 3 3778999999999999988544

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.92  E-value=3.9e-08  Score=76.37  Aligned_cols=95  Identities=23%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +..++||||+|.|.++..++...  .++++.|+|+.|....++.           ..+++  |..+ +...+.+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl--~~~~-w~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVL--DIDD-WQQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEE--ehhh-hhccCCceEEEee
Confidence            45689999999999999998766  5899999999997766552           22333  2223 3334568999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -....-...+    ..+++.+++.|+|+|++++..
T Consensus       158 LNvLDRc~~P----~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  158 LNVLDRCDRP----LTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhhhhccCCH----HHHHHHHHHHhCCCCEEEEEE
Confidence            5543333233    579999999999999988864

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2940|consensus

Probab=98.91  E-value=1.6e-09  Score=82.30  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=84.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      -..++|||||.|.+...+.... ..+++.+|.+..|++.++..-.      ..-......+| +++++....++|+|++.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd------p~i~~~~~v~D-EE~Ldf~ens~DLiisS  144 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD------PSIETSYFVGD-EEFLDFKENSVDLIISS  144 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC------CceEEEEEecc-hhcccccccchhhhhhh
Confidence            3589999999999999988774 6799999999999999887532      12346677888 67788878899999999


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...||..+-    +..+.+++..|||+|.|+-..
T Consensus       145 lslHW~NdL----Pg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  145 LSLHWTNDL----PGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             hhhhhhccC----chHHHHHHHhcCCCccchhHH
Confidence            999998654    678899999999999998654

>KOG2352|consensus

Probab=98.90  E-value=4.2e-09  Score=87.93  Aligned_cols=133  Identities=26%  Similarity=0.366  Sum_probs=103.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------CCc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------QQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~  130 (197)
                      .+..+|.+|.|.|.+...+....+..++++||++|++++.|++++...    ...+.+++..|..+++...      ...
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~----q~~r~~V~i~dGl~~~~~~~k~~~~~~~  370 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM----QSDRNKVHIADGLDFLQRTAKSQQEDIC  370 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh----hhhhhhhhHhhchHHHHHHhhccccccC
Confidence            356899999999999998888778789999999999999999998754    3346788888888877652      348


Q ss_pred             eeEEEECCCC--CC---CCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         131 FDVIITDSSD--PV---GPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       131 ~D~I~~~~~~--~~---~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      ||+++.|.-.  .+   .+.+.+..+.++..++.+|.|.|+|.+|..+  .+......+...++.+||..
T Consensus       371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~~~~~~l~~vf~~l  438 (482)
T KOG2352|consen  371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKDEVLMNLAKVFPQL  438 (482)
T ss_pred             CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhHHHHHhhhhhhHHH
Confidence            9999996532  22   2555566688999999999999999998744  33455566677777777753

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.88  E-value=2.4e-09  Score=87.11  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------CCCeEEEEcchHH-HHhh--c
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------DPRLTVHVGDGFR-FMSE--H  127 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~d~~~-~~~~--~  127 (197)
                      ++.+|||||||-|+-..-+.+. +...++++|++++.++.|+++.........      .-...++.+|... .+..  .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            5679999999988765555554 347999999999999999887621100000      1245667777542 1211  1


Q ss_pred             --CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         128 --QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       128 --~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                        ..+||+|-+-...|..-...-....+++++.+.|+|||+|+..+.+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence              2599999999888776333222366999999999999999987533

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1500|consensus

Probab=98.87  E-value=1.8e-08  Score=80.55  Aligned_cols=109  Identities=22%  Similarity=0.253  Sum_probs=79.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ...+.|||+|||+|.++...+..+ ..+|++||.++ |.+.|++...-.   +-.+++.++.|.+++. .. +++.|+|+
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N---~~~~rItVI~GKiEdi-eL-PEk~DviI  248 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASN---NLADRITVIPGKIEDI-EL-PEKVDVII  248 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcC---CccceEEEccCccccc-cC-chhccEEE
Confidence            467899999999999998877775 47999999865 888998876531   2346899999987763 22 47899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.|.....-+.+.  -+-+-.+++-|||+|.++-..+.
T Consensus       249 SEPMG~mL~NERM--LEsYl~Ark~l~P~GkMfPT~gd  284 (517)
T KOG1500|consen  249 SEPMGYMLVNERM--LESYLHARKWLKPNGKMFPTVGD  284 (517)
T ss_pred             eccchhhhhhHHH--HHHHHHHHhhcCCCCcccCcccc
Confidence            9986444333322  22334567999999998866543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.84  E-value=5.9e-09  Score=76.19  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCc-eeEEEEC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQE-FDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~-~D~I~~~  137 (197)
                      .|+|+.||.|+.+..+++..  .+|++||+||..++.|+.|..--+   ..++++++++|..+.++.. ... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            69999999999999999886  689999999999999999975421   2468999999999977653 222 8999999


Q ss_pred             CC
Q psy4592         138 SS  139 (197)
Q Consensus       138 ~~  139 (197)
                      ||
T Consensus        77 PP   78 (163)
T PF09445_consen   77 PP   78 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            96

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.84  E-value=6.9e-09  Score=82.96  Aligned_cols=135  Identities=14%  Similarity=0.173  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCcee
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D  132 (197)
                      ..++..|||++++.|+=+..++.... ...+++.|+++.-+...+.++...    ...++.+...|+....+.. ...||
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd  158 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFD  158 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccc
Confidence            34557999999999998888776433 579999999999999998887654    3457888889998875443 34699


Q ss_pred             EEEECCCCCCC----CCcc--------------cccHHHHHHHHhhc----CCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         133 VIITDSSDPVG----PAES--------------LFQASYFELMSRAL----RPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       133 ~I~~~~~~~~~----~~~~--------------l~~~~~~~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      .|++|+|....    .++.              ....+.++.+.+.+    ||||+++..+++...  +....+.+.+-+
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV~~fl~  236 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVVEKFLK  236 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHHHHHHH
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHHHHHHH
Confidence            99999986442    1111              01356899999999    999999999877433  333444444444


Q ss_pred             hCCcc
Q psy4592         191 VFPRL  195 (197)
Q Consensus       191 ~f~~v  195 (197)
                      .+|++
T Consensus       237 ~~~~~  241 (283)
T PF01189_consen  237 RHPDF  241 (283)
T ss_dssp             HSTSE
T ss_pred             hCCCc
Confidence            44443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.83  E-value=5e-08  Score=72.91  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      .+-..++......+....+.+|||+||++|+++..+.+.. +...++++|+.+.-               ..+++..+++
T Consensus         6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------------~~~~~~~i~~   70 (181)
T PF01728_consen    6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------------PLQNVSFIQG   70 (181)
T ss_dssp             HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------------S-TTEEBTTG
T ss_pred             HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------------cccceeeeec
Confidence            3444566666653422256899999999999999999876 45799999998761               0122333333


Q ss_pred             chH-----HHHhh----cCCceeEEEECCCCCCCCCcccc-------cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         119 DGF-----RFMSE----HQQEFDVIITDSSDPVGPAESLF-------QASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       119 d~~-----~~~~~----~~~~~D~I~~~~~~~~~~~~~l~-------~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |..     +.+..    ..+++|+|++|............       ....+.-+.+.|+|||.+++-...
T Consensus        71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            322     11221    23689999999854333221111       122344556889999988886533

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.83  E-value=1.4e-07  Score=73.01  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             cEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH-HHhhcCC
Q psy4592          25 TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV-SKKYLPG  103 (197)
Q Consensus        25 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~  103 (197)
                      ..+.+++...+.++..+.+..++..+..  ..+++.|||+|||+|.++..+++.+ ..+++++|++++++.. .+++   
T Consensus        45 d~I~v~~~~~~vsr~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~---  118 (228)
T TIGR00478        45 AKIELLQNPLFVSRGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQD---  118 (228)
T ss_pred             CEEeccCccchhhhhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcC---
Confidence            3444444332334444555555555542  2456799999999999999998873 4799999999987765 3332   


Q ss_pred             CCCCCCCCCe-EEEEcchH-----HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         104 MAVGLSDPRL-TVHVGDGF-----RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       104 ~~~~~~~~~~-~~~~~d~~-----~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                             +++ .+...|++     +.. ..-..+|++++..            ...+..+.+.|+| |.+++-.
T Consensus       119 -------~~v~~~~~~ni~~~~~~~~~-~d~~~~DvsfiS~------------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       119 -------ERVKVLERTNIRYVTPADIF-PDFATFDVSFISL------------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             -------CCeeEeecCCcccCCHhHcC-CCceeeeEEEeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence                   121 12222333     211 1112456555333            2367889999999 8766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3420|consensus

Probab=98.81  E-value=1.3e-08  Score=72.06  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=73.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      -.++.++|+|||+|-+..+.... +...+.|+||+|+.++.+.+|....     .-++++.++|+.+.... .+.||..+
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEf-----EvqidlLqcdildle~~-~g~fDtav  119 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEF-----EVQIDLLQCDILDLELK-GGIFDTAV  119 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHh-----hhhhheeeeeccchhcc-CCeEeeEE
Confidence            46789999999999988665544 4479999999999999999987653     23568899998765443 47899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALR  162 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lk  162 (197)
                      .|+|+......  .+-+|+..+.++.+
T Consensus       120 iNppFGTk~~~--aDm~fv~~al~~~~  144 (185)
T KOG3420|consen  120 INPPFGTKKKG--ADMEFVSAALKVAS  144 (185)
T ss_pred             ecCCCCccccc--ccHHHHHHHHHHHH
Confidence            99987664332  23567776666655

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.81  E-value=3.7e-08  Score=81.17  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----------  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------  126 (197)
                      +.+|||+.||.|.++..++...  .+|++||+++++++.|++++...    +-.|++++.+++.++...           
T Consensus       197 ~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N----~i~n~~f~~~~~~~~~~~~~~~r~~~~~~  270 (352)
T PF05958_consen  197 KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN----GIDNVEFIRGDAEDFAKALAKAREFNRLK  270 (352)
T ss_dssp             TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT----T--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred             CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc----CCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence            3489999999999999998875  69999999999999999997653    346899999887654221           


Q ss_pred             ----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         127 ----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       127 ----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                          ....+|+|+.|||-....      +..++.+.+   + ..++..+++|
T Consensus       271 ~~~~~~~~~d~vilDPPR~G~~------~~~~~~~~~---~-~~ivYvSCnP  312 (352)
T PF05958_consen  271 GIDLKSFKFDAVILDPPRAGLD------EKVIELIKK---L-KRIVYVSCNP  312 (352)
T ss_dssp             GS-GGCTTESEEEE---TT-SC------HHHHHHHHH---S-SEEEEEES-H
T ss_pred             hhhhhhcCCCEEEEcCCCCCch------HHHHHHHhc---C-CeEEEEECCH
Confidence                123689999999743321      445555543   2 2666666664

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.79  E-value=2.1e-08  Score=86.77  Aligned_cols=127  Identities=17%  Similarity=0.228  Sum_probs=81.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC--------CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH----
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS--------VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM----  124 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~----  124 (197)
                      ...+|||.|||+|.+...+.+..+        ...++++|+++..++.++.++...    .....++.+.|.....    
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~----~~~~~~i~~~d~l~~~~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF----ALLEINVINFNSLSYVLLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc----CCCCceeeeccccccccccc
Confidence            346999999999999888775321        257899999999999999886542    1123455555533211    


Q ss_pred             hhcCCceeEEEECCCCCCCC-Cc-c-----------------------------------------cccHHHHHHHHhhc
Q psy4592         125 SEHQQEFDVIITDSSDPVGP-AE-S-----------------------------------------LFQASYFELMSRAL  161 (197)
Q Consensus       125 ~~~~~~~D~I~~~~~~~~~~-~~-~-----------------------------------------l~~~~~~~~~~~~L  161 (197)
                      ....++||+|+.|||..... .. .                                         ++..-|++.+.+.|
T Consensus       107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL  186 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA  186 (524)
T ss_pred             ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence            11235899999999853311 00 0                                         00001346788999


Q ss_pred             CCCcEEEEEcCCCCcChhHHHHHHHH
Q psy4592         162 RPGGIVCSQAGTLWYSLDCVGNTLQH  187 (197)
Q Consensus       162 kpgG~l~~~~~~~~~~~~~~~~~~~~  187 (197)
                      ++||++.+.+...+......+.+.+.
T Consensus       187 ~~~G~~~~I~P~s~l~~~~~~~lR~~  212 (524)
T TIGR02987       187 NKNGYVSIISPASWLGDKTGENLREY  212 (524)
T ss_pred             CCCCEEEEEEChHHhcCccHHHHHHH
Confidence            99999998876666544444444443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=7.4e-08  Score=72.67  Aligned_cols=132  Identities=18%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      .++.....++  .++..|+|||+..|+|+..+++..+ ...|++||+.|--               ..+++.++++|+.+
T Consensus        34 ~el~~k~~i~--~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~   96 (205)
T COG0293          34 LELNEKFKLF--KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITD   96 (205)
T ss_pred             HHHHHhcCee--cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccC
Confidence            4444444322  5678999999999999998887543 3459999998722               12458888888763


Q ss_pred             H-----Hhh--cCCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592         123 F-----MSE--HQQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC  188 (197)
Q Consensus       123 ~-----~~~--~~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  188 (197)
                      -     +..  ...++|+|++|+.-........       .....++-+..+|+|||.|++-    .+..+....+++.+
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~  172 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKAL  172 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHH
Confidence            2     111  1345799999986433211110       1133556667899999999984    34456777888888


Q ss_pred             HhhCCccc
Q psy4592         189 ASVFPRLH  196 (197)
Q Consensus       189 ~~~f~~v~  196 (197)
                      ++.|..|+
T Consensus       173 ~~~F~~v~  180 (205)
T COG0293         173 RRLFRKVK  180 (205)
T ss_pred             HHhhceeE
Confidence            88888775

>KOG1709|consensus

Probab=98.78  E-value=5.9e-08  Score=73.09  Aligned_cols=105  Identities=17%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      -++.+||.+|.|-|.+...+.+..+ ...+.||..|.+++..+.+-..     +..|+.+..+--.+.++. .++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence            5778999999999999988888766 5777999999999999987543     456788887776666655 35679999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +-|.+.+...+-    ..+.+.+.++|||+|++-+-
T Consensus       174 ~yDTy~e~yEdl----~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  174 YYDTYSELYEDL----RHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             EeechhhHHHHH----HHHHHHHhhhcCCCceEEEe
Confidence            999875443332    57889999999999998763

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.77  E-value=6.1e-09  Score=84.39  Aligned_cols=116  Identities=23%  Similarity=0.286  Sum_probs=73.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-------CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-------PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-  127 (197)
                      .++.+|+|-+||+|++..++.+.       ....+++|+|+++.++.+|+.++...  +....+..+..+|........ 
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--GIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--THHCBGCEEEES-TTTSHSCTS
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--cccccccccccccccccccccc
Confidence            44568999999999998877652       24479999999999999998764321  112234568888865432222 


Q ss_pred             CCceeEEEECCCCCCC--CCccc---------------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         128 QQEFDVIITDSSDPVG--PAESL---------------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~--~~~~l---------------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ..+||+|++|||....  ....+               ..-.|+..+.+.|++||++.+.+..
T Consensus       123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            4689999999986432  11110               0124889999999999997776543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1499|consensus

Probab=98.76  E-value=1.7e-08  Score=81.22  Aligned_cols=105  Identities=22%  Similarity=0.298  Sum_probs=75.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+.|||+|||+|.++...++.+. .++++||.+. +++.|++.+..  +++. ..++++.+.+++. .-+.++.|+|+
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~--N~~~-~ii~vi~gkvEdi-~LP~eKVDiIv  132 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKD--NGLE-DVITVIKGKVEDI-ELPVEKVDIIV  132 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHh--cCcc-ceEEEeecceEEE-ecCccceeEEe
Confidence            3568999999999999999998864 7999999876 44888776654  2222 4699999988775 32358999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHH----HhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELM----SRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~----~~~LkpgG~l~~~~  171 (197)
                      +.+.-++.     +-+..++.+    -+-|+|||.++=..
T Consensus       133 SEWMGy~L-----l~EsMldsVl~ARdkwL~~~G~i~P~~  167 (346)
T KOG1499|consen  133 SEWMGYFL-----LYESMLDSVLYARDKWLKEGGLIYPDR  167 (346)
T ss_pred             ehhhhHHH-----HHhhhhhhhhhhhhhccCCCceEcccc
Confidence            98864332     113333333    37899999987543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.75  E-value=9.2e-08  Score=76.58  Aligned_cols=86  Identities=20%  Similarity=0.185  Sum_probs=67.5

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      .+++..+..   .++..++|.+||.|+.+..+++..+ ..+++++|.||++++.+++.+..      ..+++++++|..+
T Consensus         9 ~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~   79 (296)
T PRK00050          9 DEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHH
Confidence            444544432   3456999999999999999998764 57999999999999999987642      2489999999988


Q ss_pred             HHhhcCC---ceeEEEECC
Q psy4592         123 FMSEHQQ---EFDVIITDS  138 (197)
Q Consensus       123 ~~~~~~~---~~D~I~~~~  138 (197)
                      +.....+   ++|.|++|.
T Consensus        80 l~~~l~~~~~~vDgIl~DL   98 (296)
T PRK00050         80 LKEVLAEGLGKVDGILLDL   98 (296)
T ss_pred             HHHHHHcCCCccCEEEECC
Confidence            7544322   799999985

>KOG0820|consensus

Probab=98.74  E-value=6.8e-08  Score=75.17  Aligned_cols=80  Identities=25%  Similarity=0.352  Sum_probs=64.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++++.||++|.|||.++..+++..  .+|+++|+||.|+...++..+..  . ...+++++.+|.   +......||.+|
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gt--p-~~~kLqV~~gD~---lK~d~P~fd~cV  128 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGT--P-KSGKLQVLHGDF---LKTDLPRFDGCV  128 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCC--C-ccceeeEEeccc---ccCCCcccceee
Confidence            677899999999999999999885  79999999999999888876532  1 235899999996   444346799999


Q ss_pred             ECCCCCCC
Q psy4592         136 TDSSDPVG  143 (197)
Q Consensus       136 ~~~~~~~~  143 (197)
                      +|.|..++
T Consensus       129 sNlPyqIS  136 (315)
T KOG0820|consen  129 SNLPYQIS  136 (315)
T ss_pred             ccCCcccc
Confidence            99886554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.73  E-value=1.7e-07  Score=73.84  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=91.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      ..+-+||||.||.|.....+....+.  .++...|.+|.-++..++.+...  ++. ..++|.++|+.+.-..  -..+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~-~i~~f~~~dAfd~~~l~~l~p~P  210 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLE-DIARFEQGDAFDRDSLAALDPAP  210 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCc-cceEEEecCCCCHhHhhccCCCC
Confidence            45679999999999888777765443  79999999999999998877642  222 3459999998775332  24567


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      |++++..-....+++.+. ...++.+.+++.|||+++.. +.||+  +.++-+-..+.+
T Consensus       211 ~l~iVsGL~ElF~Dn~lv-~~sl~gl~~al~pgG~lIyT-gQPwH--PQle~IAr~Lts  265 (311)
T PF12147_consen  211 TLAIVSGLYELFPDNDLV-RRSLAGLARALEPGGYLIYT-GQPWH--PQLEMIARVLTS  265 (311)
T ss_pred             CEEEEecchhhCCcHHHH-HHHHHHHHHHhCCCcEEEEc-CCCCC--cchHHHHHHHhc
Confidence            998887765555555443 56788899999999999874 45666  344444444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.71  E-value=3e-07  Score=68.85  Aligned_cols=100  Identities=23%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS  139 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~  139 (197)
                      +++|||+|.|.=+.-++-..|..+++.+|....-+...+.-...+    +-+|++++++.+++  .....+||+|++-+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeehh
Confidence            899999999965555554456689999999987766665544332    34589999999887  344679999998875


Q ss_pred             CCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         140 DPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       140 ~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .    +.    ..+++-+...|++||.+++.-+.
T Consensus       125 ~----~l----~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  125 A----PL----DKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             S----SH----HHHHHHHGGGEEEEEEEEEEESS
T ss_pred             c----CH----HHHHHHHHHhcCCCCEEEEEcCC
Confidence            2    11    56889999999999999987654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2915|consensus

Probab=98.71  E-value=8e-08  Score=74.75  Aligned_cols=124  Identities=18%  Similarity=0.182  Sum_probs=89.7

Q ss_pred             ccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCC
Q psy4592          52 LCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQ  129 (197)
Q Consensus        52 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  129 (197)
                      ++...++.+|++-|+|+|+++.++++. .|..+++..|..+.-.+.|++.|...  + -.+++++.+-|+...= .....
T Consensus       100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--g-i~~~vt~~hrDVc~~GF~~ks~  176 (314)
T KOG2915|consen  100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--G-IGDNVTVTHRDVCGSGFLIKSL  176 (314)
T ss_pred             HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--C-CCcceEEEEeecccCCcccccc
Confidence            344567789999999999999999875 45679999999998888888877652  2 3468999988865421 11256


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCc-EEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++|+|+.|.|.||..-         ..++++||.+| +++..+  |+.  +++++..+.+++.
T Consensus       177 ~aDaVFLDlPaPw~Ai---------Pha~~~lk~~g~r~csFS--PCI--EQvqrtce~l~~~  226 (314)
T KOG2915|consen  177 KADAVFLDLPAPWEAI---------PHAAKILKDEGGRLCSFS--PCI--EQVQRTCEALRSL  226 (314)
T ss_pred             ccceEEEcCCChhhhh---------hhhHHHhhhcCceEEecc--HHH--HHHHHHHHHHHhC
Confidence            8999999998877633         34556888888 555433  333  6777777777653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.68  E-value=1.6e-07  Score=83.87  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC------------C------------------------------CCccEEEEEcCHHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH------------P------------------------------SVESAYLVEIDNRV   93 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~------------~------------------------------~~~~v~~ve~~~~~   93 (197)
                      ..+..++|.+||+|.+..+.+..            .                              ...+++++|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            34579999999999999886541            0                              11369999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc---CCCcEEEE
Q psy4592          94 IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL---RPGGIVCS  169 (197)
Q Consensus        94 ~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L---kpgG~l~~  169 (197)
                      ++.|++|+...  ++ ...+++.++|+.+.... ..++||+|++|||........-...+++..+-+.|   .+|+.+++
T Consensus       269 v~~A~~N~~~~--g~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l  345 (702)
T PRK11783        269 IQAARKNARRA--GV-AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL  345 (702)
T ss_pred             HHHHHHHHHHc--CC-CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            99999998752  22 24689999998875332 13579999999986443211100133444444333   48888877


Q ss_pred             EcCC
Q psy4592         170 QAGT  173 (197)
Q Consensus       170 ~~~~  173 (197)
                      .+..
T Consensus       346 lt~~  349 (702)
T PRK11783        346 FSSS  349 (702)
T ss_pred             EeCC
Confidence            6543

>KOG1975|consensus

Probab=98.68  E-value=3.5e-08  Score=78.43  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC--CCCeEEEEcchHH-----HHhhcC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS--DPRLTVHVGDGFR-----FMSEHQ  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~d~~~-----~~~~~~  128 (197)
                      ++...++++|||-|+-.+-+.+. +...++++||.+.-++-|+++.....+...  .=...++.+|-..     .++..+
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            45678999999999987666655 346899999999999999887543311100  0136777777432     122223


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+||+|-+-.+.|..-...--...++.++.+.|+|||+|+-.+.+
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            459999998887775221111256899999999999999976533

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.63  E-value=2e-07  Score=73.82  Aligned_cols=112  Identities=21%  Similarity=0.341  Sum_probs=80.5

Q ss_pred             CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      +.+|..++.|         ......+...+..   .+...|||+|+|+|.++..+++..  .+++++|+|+.+.+..++.
T Consensus         6 k~~gQnFL~~---------~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~   71 (262)
T PF00398_consen    6 KSLGQNFLVD---------PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKER   71 (262)
T ss_dssp             CGCTSSEEEH---------HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHH
T ss_pred             CCCCcCeeCC---------HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHH
Confidence            3467776665         3334555555532   366799999999999999999876  7999999999999999998


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHh
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSR  159 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~  159 (197)
                      +.      ..++++++.+|+.++-...  ......|+.|.|...       +..++.++..
T Consensus        72 ~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i-------s~~il~~ll~  119 (262)
T PF00398_consen   72 FA------SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI-------SSPILRKLLE  119 (262)
T ss_dssp             CT------TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG-------HHHHHHHHHH
T ss_pred             hh------hcccceeeecchhccccHHhhcCCceEEEEEecccc-------hHHHHHHHhh
Confidence            75      2578999999988743322  246678998887422       2456666655

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.61  E-value=3.7e-07  Score=74.78  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=84.6

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCCCC--------------------------------c-------cEEEEEcCHHH
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHPSV--------------------------------E-------SAYLVEIDNRV   93 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--------------------------------~-------~v~~ve~~~~~   93 (197)
                      ..+.....++|-=||+|.+..+.+....+                                .       .+.++|+|+.+
T Consensus       187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~  266 (381)
T COG0116         187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH  266 (381)
T ss_pred             cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence            33455578999999999999887765321                                1       27799999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC--CC---cccccHHHHHHHHhhcCCCcEEE
Q psy4592          94 IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG--PA---ESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus        94 ~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~--~~---~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      ++.|+.|...  .+. .+.+++.++|+..+-.. .+++|+||+|||....  ..   ..|+ .++.+.+++.++.-+.++
T Consensus       267 i~~Ak~NA~~--AGv-~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v  341 (381)
T COG0116         267 IEGAKANARA--AGV-GDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYV  341 (381)
T ss_pred             HHHHHHHHHh--cCC-CceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEE
Confidence            9999999765  232 45899999998764332 2789999999986432  11   1133 567778889999989888


Q ss_pred             EEcC
Q psy4592         169 SQAG  172 (197)
Q Consensus       169 ~~~~  172 (197)
                      +.+.
T Consensus       342 ~tt~  345 (381)
T COG0116         342 FTTS  345 (381)
T ss_pred             EEcc
Confidence            8653

>PRK10742 putative methyltransferase; Provisional

Probab=98.56  E-value=4e-07  Score=70.69  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCCC---CCeEEEEcchHHHHhhcCCceeEE
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLSD---PRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~~---~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +|||+-+|+|..+..++..+  ++|+++|.+|.+..+.+.++....  .....   .+++++++|+.+++....++||+|
T Consensus        91 ~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV  168 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_pred             EEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence            89999999999999999874  679999999999988887765420  00011   479999999999998766689999


Q ss_pred             EECCCCCCC
Q psy4592         135 ITDSSDPVG  143 (197)
Q Consensus       135 ~~~~~~~~~  143 (197)
                      +.||+++..
T Consensus       169 YlDPMfp~~  177 (250)
T PRK10742        169 YLDPMFPHK  177 (250)
T ss_pred             EECCCCCCC
Confidence            999998764

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.53  E-value=9.4e-08  Score=65.11  Aligned_cols=96  Identities=22%  Similarity=0.217  Sum_probs=44.9

Q ss_pred             EEEeCCchHhHHHHhcCCCC---ccEEEEEcCHH---HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592          62 LIVGGGDGGVAREVLKHPSV---ESAYLVEIDNR---VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI  134 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~---~~v~~ve~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I  134 (197)
                      ||+|+..|..+..+++..+.   .+++++|..+.   .-+.+++.      + ...+++++.++..+.++.- .+++|+|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~------~-~~~~~~~~~g~s~~~l~~~~~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKA------G-LSDRVEFIQGDSPDFLPSLPDGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS------------G------G-G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhc------C-CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence            68999999988887764322   37999999994   33333321      1 1347999999998887654 3799999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +.|..... .    .....++.+.+.|+|||++++
T Consensus        74 ~iDg~H~~-~----~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   74 FIDGDHSY-E----AVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             EEES---H-H----HHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCCH-H----HHHHHHHHHHHHcCCCeEEEE
Confidence            99984211 1    125678899999999999987

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.51  E-value=1.2e-06  Score=78.01  Aligned_cols=113  Identities=14%  Similarity=0.147  Sum_probs=77.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC-------C-----CccEEEEEcCH---HHHHHH-----------HhhcCCCC---CCC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP-------S-----VESAYLVEIDN---RVIEVS-----------KKYLPGMA---VGL  108 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~-------~-----~~~v~~ve~~~---~~~~~a-----------~~~~~~~~---~~~  108 (197)
                      .-+|+|+|.|+|.......+..       +     ..+++.+|..|   +-+..+           ++....+.   .+.
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3699999999998665544211       1     35889999754   222222           12111110   011


Q ss_pred             -------CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         109 -------SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       109 -------~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                             ..-.+++..+|+++.++.....+|+++.|++.+.. ++.++++++|+.++++++|||.+...+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEee
Confidence                   11256688899999888655679999999987665 457889999999999999999999865

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.50  E-value=2.8e-07  Score=77.53  Aligned_cols=97  Identities=20%  Similarity=0.304  Sum_probs=62.4

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEE--EEcCHHHHHHHHhh-cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYL--VEIDNRVIEVSKKY-LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~--ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.+||+|||+|+++.+|..+. ...+..  -|..+..++.|.++ ++.        -+.+. +  ..-++.++.+||+|.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa--------~~~~~-~--s~rLPfp~~~fDmvH  186 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPA--------MIGVL-G--SQRLPFPSNAFDMVH  186 (506)
T ss_pred             EEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcch--------hhhhh-c--cccccCCccchhhhh
Confidence            689999999999999988763 222211  13334555555443 221        11111 1  123666788999999


Q ss_pred             ECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.-+. ++..+.    .-++-++-|+|+|||+|++..
T Consensus       187 csrc~i~W~~~~----g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  187 CSRCLIPWHPND----GFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             cccccccchhcc----cceeehhhhhhccCceEEecC
Confidence            87654 444443    347788999999999999865

; GO: 0008168 methyltransferase activity

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.49  E-value=3.7e-06  Score=64.06  Aligned_cols=122  Identities=19%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHH----HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNR----VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (197)
                      ...+++.+||-+|.++|.....+..- .+...|++||.+|.    .+++|+++          +|+-.+.+||+......
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~  138 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYR  138 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGT
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhh
Confidence            33456789999999999988887763 33579999999994    45566553          57888999998543332


Q ss_pred             --CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-----CCcChhHHHHHHHHHHh
Q psy4592         128 --QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       128 --~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~~~~~~  190 (197)
                        -+..|+|++|.+.+.-      .+-+..++...||+||.+++..-.     .....+.+++..+.+++
T Consensus       139 ~lv~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~  202 (229)
T PF01269_consen  139 MLVEMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKE  202 (229)
T ss_dssp             TTS--EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHC
T ss_pred             cccccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHH
Confidence              4689999999863221      255778888999999998876522     11234566667777765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3178|consensus

Probab=98.47  E-value=6.2e-07  Score=72.36  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=78.3

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      ...+|+|.|.|..+..++..++  ++.+++.+...+-.++.++.        +.++.+-+|..+-    ..+-|+|++.+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mkW  244 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMKW  244 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEEe
Confidence            6899999999999999888654  68889998777666666542        3477788886432    45678999999


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..|+.++..+  .++++++++.|+|||.+++.-+
T Consensus       245 iLhdwtDedc--vkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  245 ILHDWTDEDC--VKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ecccCChHHH--HHHHHHHHHhCCCCCEEEEEec
Confidence            9988887765  6899999999999999888653

>KOG1122|consensus

Probab=98.47  E-value=8.2e-07  Score=73.03  Aligned_cols=135  Identities=12%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .++.+|||+++..|+=+.+++... ....|++-|.+.+-++..+.++..+    ...+.-+.+.|..++... ..++||-
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl----Gv~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL----GVTNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh----CCCceEEEccCcccccccccCcccce
Confidence            345799999999999887777532 2368999999999999999988765    245677788888765332 2348999


Q ss_pred             EEECCCCCC---CCCc---------------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         134 IITDSSDPV---GPAE---------------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       134 I~~~~~~~~---~~~~---------------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      |+.|+|...   +..+               .-++.+++.++.+.+++||+|+..+++-..  +....+....-..||++
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~--~ENE~vV~yaL~K~p~~  393 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV--EENEAVVDYALKKRPEV  393 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch--hhhHHHHHHHHHhCCce
Confidence            999998644   1000               012367899999999999999998877433  44566666666667766


Q ss_pred             c
Q psy4592         196 H  196 (197)
Q Consensus       196 ~  196 (197)
                      +
T Consensus       394 k  394 (460)
T KOG1122|consen  394 K  394 (460)
T ss_pred             E
Confidence            5

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.46  E-value=2.9e-07  Score=68.03  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=76.9

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      ..+.|+|+|+|.++...++..  .++.+||.+|...++|++|+..+    ...+++++.+|++++ ..  +..|+|+|.+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA~~y-~f--e~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDARDY-DF--ENADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCC----CCcceEEEecccccc-cc--cccceeHHHH
Confidence            589999999999988777663  69999999999999999997654    356899999999874 33  5689999876


Q ss_pred             CCCCC-CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         139 SDPVG-PAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       139 ~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      -.... ...+   ...++.+...||.++.++-+
T Consensus       105 lDTaLi~E~q---VpV~n~vleFLr~d~tiiPq  134 (252)
T COG4076         105 LDTALIEEKQ---VPVINAVLEFLRYDPTIIPQ  134 (252)
T ss_pred             hhHHhhcccc---cHHHHHHHHHhhcCCccccH
Confidence            43222 2222   34677788888999988743

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.44  E-value=1.3e-06  Score=65.93  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++...|.|+|||.+.++..+..   ..+|...|+-+.                 ++  .+..+|+.. +|-.+++.|++|
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------------n~--~Vtacdia~-vPL~~~svDv~V  127 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------------NP--RVTACDIAN-VPLEDESVDVAV  127 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------ST--TEEES-TTS--S--TT-EEEEE
T ss_pred             CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------------CC--CEEEecCcc-CcCCCCceeEEE
Confidence            4457999999999999866532   247888887331                 12  366688744 555678999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      .+...... +.    ..++.++.|+|||||.+.+.......  +..+.+.+.+.
T Consensus       128 fcLSLMGT-n~----~~fi~EA~RvLK~~G~L~IAEV~SRf--~~~~~F~~~~~  174 (219)
T PF05148_consen  128 FCLSLMGT-NW----PDFIREANRVLKPGGILKIAEVKSRF--ENVKQFIKALK  174 (219)
T ss_dssp             EES---SS--H----HHHHHHHHHHEEEEEEEEEEEEGGG---S-HHHHHHHHH
T ss_pred             EEhhhhCC-Cc----HHHHHHHHheeccCcEEEEEEecccC--cCHHHHHHHHH
Confidence            98764322 32    78999999999999999986533222  23344444444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK04148 hypothetical protein; Provisional

Probab=98.42  E-value=6.9e-07  Score=63.15  Aligned_cols=70  Identities=23%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||||||+|. ++..+.+.+  ..|+++|++|..++.++++           .++++.+|..+.-..--+.+|+|
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence            345799999999996 777777553  7999999999999888764           25677788654222224579999


Q ss_pred             EECC
Q psy4592         135 ITDS  138 (197)
Q Consensus       135 ~~~~  138 (197)
                      .+--
T Consensus        82 ysir   85 (134)
T PRK04148         82 YSIR   85 (134)
T ss_pred             EEeC
Confidence            9754

>KOG2187|consensus

Probab=98.42  E-value=3.2e-06  Score=71.28  Aligned_cols=103  Identities=18%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-C---Cce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-Q---QEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~  131 (197)
                      +..+.++|+.||||.++..+++..  .++.+||++|+.++-|+++...+    ...|.+|+++.+++.++.- +   ++=
T Consensus       382 ~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence            455899999999999999888765  79999999999999999997653    3468999999877765542 1   234


Q ss_pred             e-EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         132 D-VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       132 D-~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      + ++++|++-....      ..+++.+++.-++-=.+++.
T Consensus       456 ~~v~iiDPpR~Glh------~~~ik~l~~~~~~~rlvyvS  489 (534)
T KOG2187|consen  456 TLVAIIDPPRKGLH------MKVIKALRAYKNPRRLVYVS  489 (534)
T ss_pred             ceEEEECCCccccc------HHHHHHHHhccCccceEEEE
Confidence            5 777788743321      45667666665566555554

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.36  E-value=5.7e-07  Score=71.83  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=70.9

Q ss_pred             CCeEEEEeCCchHhH--HH--HhcCC----CCccEEEEEcCHHHHHHHHhhc-C-----------------CCC---CC-
Q psy4592          58 PKKVLIVGGGDGGVA--RE--VLKHP----SVESAYLVEIDNRVIEVSKKYL-P-----------------GMA---VG-  107 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~--~~--l~~~~----~~~~v~~ve~~~~~~~~a~~~~-~-----------------~~~---~~-  107 (197)
                      +-+|+-.||+||.-+  .+  +.+..    ...+|+++|+|+.+++.|++-. +                 ...   ++ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            469999999999632  22  22221    1358999999999999998741 1                 000   00 


Q ss_pred             --C---CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         108 --L---SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       108 --~---~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                        .   -...+.|...|+.+......++||+|++.....+....  .....++.+.+.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~--~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT--TQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH--HHHHHHHHHHHHhCCCcEEEEe
Confidence              0   01356777777654211114689999996554332221  1278999999999999998873

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.32  E-value=3.6e-06  Score=64.11  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC-----CCCCCCCCeEEEEcchHHHH--hhcC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM-----AVGLSDPRLTVHVGDGFRFM--SEHQ  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~d~~~~~--~~~~  128 (197)
                      .+...++|||||.|.....++...+..+..|||+.+...+.|+.....+     .-+....++++..+|..+..  ...-
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            4567999999999998887776555456999999999887776432110     01123457888999875422  1112


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ...|+|++|.....   +.+  ...+.+....||+|.+++.
T Consensus       121 s~AdvVf~Nn~~F~---~~l--~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 SDADVVFVNNTCFD---PDL--NLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HC-SEEEE--TTT----HHH--HHHHHHHHTTS-TT-EEEE
T ss_pred             cCCCEEEEeccccC---HHH--HHHHHHHHhcCCCCCEEEE
Confidence            45899999885321   111  2344666678898888775

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.29  E-value=1.1e-06  Score=66.47  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             CCCeEEEEeCCchHhH----HHHhc---C-CC-CccEEEEEcCHHHHHHHHhh------------------c-CCCCCCC
Q psy4592          57 NPKKVLIVGGGDGGVA----REVLK---H-PS-VESAYLVEIDNRVIEVSKKY------------------L-PGMAVGL  108 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~----~~l~~---~-~~-~~~v~~ve~~~~~~~~a~~~------------------~-~~~~~~~  108 (197)
                      .+-+|+-.||++|.-+    ..+..   . .+ ..+|++.|+|+.+++.|++-                  + ...++.+
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4579999999999632    22222   1 11 36999999999999999763                  1 1000000


Q ss_pred             C-----CCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         109 S-----DPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       109 ~-----~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .     ..+++|...|..+ .....+.||+|+|....-.....  ...+.++.+.+.|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~--~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE--TQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH--HHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH--HHHHHHHHHHHHcCCCCEEEEe
Confidence            0     1368888888877 22235789999997654332221  1278999999999999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.29  E-value=6.7e-06  Score=64.97  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC---C---------C---CC-------------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG---M---------A---VG-------------  107 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~---------~---~~-------------  107 (197)
                      +.+.+||.-|||.|.++.++++.+  ..+.+.|.|--|+-...--+..   .         .   +.             
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            345799999999999999999884  6899999998775332211110   0         0   00             


Q ss_pred             --------CCCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         108 --------LSDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       108 --------~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                              ....++++..||..+.....  .++||+|+...+....++-    -++++.+.++||||| +++|.+.
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni----~~Yi~tI~~lLkpgG-~WIN~GP  203 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI----IEYIETIEHLLKPGG-YWINFGP  203 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH----HHHHHHHHHHhccCC-EEEecCC
Confidence                    01236777788877765543  4699999988654443332    679999999999999 6667654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.28  E-value=3.6e-06  Score=64.32  Aligned_cols=99  Identities=20%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +++++|||+|.|.=+.-++-..+..++|.+|....-+...+.-...+    +-+|++++++-++++.+.... ||+|++-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~~~-~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEKKQ-YDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccccc-CcEEEee
Confidence            68999999999965544443345577999998876555554433322    446899999999886543222 9999987


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +....        ..+.+-+...+|+||.++.
T Consensus       143 Ava~L--------~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         143 AVASL--------NVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             hccch--------HHHHHHHHHhcccCCcchh
Confidence            75311        4577888999999998765

>KOG3115|consensus

Probab=98.27  E-value=3e-06  Score=63.44  Aligned_cols=113  Identities=16%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC---CCCCCCCeEEEEcchHHHHhhc--CCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA---VGLSDPRLTVHVGDGFRFMSEH--QQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~--~~~~D~  133 (197)
                      -.+.|||||-|++...++-..|.+-+.|.||.-.+.+..+.++..++   .+-..+++.+...++..+++.-  .++.+-
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            47999999999999999988898999999999888888877654332   1112467888888888877652  344555


Q ss_pred             EEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++...+.++.    ....+.+..++.+..-+|++||.++...
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            5555554442    3345566789999999999999998854

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=4.4e-05  Score=57.29  Aligned_cols=136  Identities=16%  Similarity=0.135  Sum_probs=90.8

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      ..++.-+..+..+.+.+||=+|..+|....++..-.+...+++||.+|....-.-.-..      ..+|+-.+.+||+..
T Consensus        63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P  136 (231)
T COG1889          63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKP  136 (231)
T ss_pred             HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCc
Confidence            34444444444567789999999999998888876666799999999976543332222      135777888998753


Q ss_pred             Hhh--cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC-----cChhHHHHHHHHHHhh
Q psy4592         124 MSE--HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW-----YSLDCVGNTLQHCASV  191 (197)
Q Consensus       124 ~~~--~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~~~~~  191 (197)
                      ...  --+..|+|+.|...+..      .+-+..++...||+||.+++..-...     ...+.++...+.+++.
T Consensus       137 ~~Y~~~Ve~VDviy~DVAQp~Q------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~  205 (231)
T COG1889         137 EKYRHLVEKVDVIYQDVAQPNQ------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG  205 (231)
T ss_pred             HHhhhhcccccEEEEecCCchH------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence            332  25679999999864322      25577889999999997666542211     1234566566666554

>KOG2198|consensus

Probab=98.25  E-value=9.8e-06  Score=65.91  Aligned_cols=136  Identities=19%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------  124 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------  124 (197)
                      .++..+|||+|+..|+-+..+++..-    ...+++=|.++.-+....+.....    ..+++.+...|+..+.      
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence            46778999999999998877775421    237888899988777666544432    2344444444433221      


Q ss_pred             --hhcCCceeEEEECCCCCCC----CCcccc---------------cHHHHHHHHhhcCCCcEEEEEcCCC--CcChhHH
Q psy4592         125 --SEHQQEFDVIITDSSDPVG----PAESLF---------------QASYFELMSRALRPGGIVCSQAGTL--WYSLDCV  181 (197)
Q Consensus       125 --~~~~~~~D~I~~~~~~~~~----~~~~l~---------------~~~~~~~~~~~LkpgG~l~~~~~~~--~~~~~~~  181 (197)
                        +.....||-|++|.|....    .++.++               .-..+.+..++||+||.++.++++.  ..+....
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV  308 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV  308 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence              1224589999999875331    111111               2357888899999999999998773  3355666


Q ss_pred             HHHHHHHHhhCCc
Q psy4592         182 GNTLQHCASVFPR  194 (197)
Q Consensus       182 ~~~~~~~~~~f~~  194 (197)
                      +++++.+...++-
T Consensus       309 ~~~L~~~~~~~~l  321 (375)
T KOG2198|consen  309 QEALQKVGGAVEL  321 (375)
T ss_pred             HHHHHHhcCcccc
Confidence            7777666655543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.23  E-value=9.6e-06  Score=64.28  Aligned_cols=108  Identities=17%  Similarity=0.333  Sum_probs=64.1

Q ss_pred             CCCeEEEEeCCchHhHHH-HhcC-CCCccEEEEEcCHHHHHHHHhhcC-CCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVARE-VLKH-PSVESAYLVEIDNRVIEVSKKYLP-GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~-l~~~-~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .|.+|+-||+|.==++.. +++. ...+.++++|+||+..+.+++-.. ..  ++ ..+++++.+|+.+.. ..-..||+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~--~L-~~~m~f~~~d~~~~~-~dl~~~Dv  195 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL--GL-SKRMSFITADVLDVT-YDLKEYDV  195 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH--SSEEEEES-GGGG--GG----SE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc--cc-cCCeEEEecchhccc-cccccCCE
Confidence            457999999997655544 4443 345789999999999999988654 21  12 468999999986532 22468999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+..........+   ..+.++++.+.++||..+++-+
T Consensus       196 V~lAalVg~~~e~---K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  196 VFLAALVGMDAEP---KEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             EEE-TT-S----S---HHHHHHHHHHHS-TTSEEEEEE
T ss_pred             EEEhhhcccccch---HHHHHHHHHhhCCCCcEEEEec
Confidence            9988754332222   3789999999999999999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG4589|consensus

Probab=98.20  E-value=1.4e-05  Score=59.25  Aligned_cols=122  Identities=16%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHh-------h
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMS-------E  126 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~-------~  126 (197)
                      ++..+|||+||..|+|+.-..+. .|...+.+||+-.-.        +       .+...++++ |+.+...       .
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-------~~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-------PEGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-------CCCcccccccccCCHHHHHHHHHhC
Confidence            34679999999999999876654 577899999984311        1       123444444 4332111       1


Q ss_pred             cCCceeEEEECCCC-CCCCC--cc--cc--cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         127 HQQEFDVIITDSSD-PVGPA--ES--LF--QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       127 ~~~~~D~I~~~~~~-~~~~~--~~--l~--~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +..+.|+|++|+.- ..+..  .+  +.  ..+.+--+...++|+|.|++-....    +....+-+.+.++|..|+
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g----~e~~~l~r~l~~~f~~Vk  205 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG----SEEALLQRRLQAVFTNVK  205 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC----CchHHHHHHHHHHhhhcE
Confidence            34689999999863 22211  11  00  0223333457789999999865332    233344455555565554

>KOG3045|consensus

Probab=98.11  E-value=2.1e-05  Score=61.14  Aligned_cols=88  Identities=17%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +....|.|+|||.+-++.   .. . ..|...|+-+                   .+-.++.+|+++ ++..+++.|++|
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~-~-~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV  233 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SE-R-HKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAV  233 (325)
T ss_pred             cCceEEEecccchhhhhh---cc-c-cceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEE
Confidence            344689999999987764   22 2 5777777622                   234567788877 566688999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+...... +.    ..|+.+++|+|++||.+++-...
T Consensus       234 ~CLSLMgt-n~----~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  234 FCLSLMGT-NL----ADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             eeHhhhcc-cH----HHHHHHHHHHhccCceEEEEehh
Confidence            88754222 22    67999999999999999986543

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.10  E-value=7.7e-05  Score=60.59  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcC-CCCCCCCCCCeEE--EEcchHHHHhh--
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLP-GMAVGLSDPRLTV--HVGDGFRFMSE--  126 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~~~~~~~--~~~d~~~~~~~--  126 (197)
                      +.+..++|+|||+|.-+..++..    ....+++.+|+|.++++.+.+.+. .     ..+.+++  +++|..+.+..  
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~gdy~~~l~~l~  149 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLLGTYDDGLAWLK  149 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEEecHHHHHhhcc
Confidence            34558999999999876655542    223689999999999999988876 3     2345555  88888765432  


Q ss_pred             -c--CCceeEEEECC-CCCCCCCcccccHHHHHHHHh-hcCCCcEEEEEc
Q psy4592         127 -H--QQEFDVIITDS-SDPVGPAESLFQASYFELMSR-ALRPGGIVCSQA  171 (197)
Q Consensus       127 -~--~~~~D~I~~~~-~~~~~~~~~l~~~~~~~~~~~-~LkpgG~l~~~~  171 (197)
                       .  .....+++.-. ......+.  ....|++++++ .|+|||.|++-.
T Consensus       150 ~~~~~~~~r~~~flGSsiGNf~~~--ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       150 RPENRSRPTTILWLGSSIGNFSRP--EAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             cccccCCccEEEEeCccccCCCHH--HHHHHHHHHHHhhCCCCCEEEEec
Confidence             1  12345555433 22221111  12579999999 999999999865

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.10  E-value=2.4e-05  Score=62.40  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..|.+|||+|+|.|..+-++.... ...+++++|.|+.|+++++.-+....   .............+..  ...+.|+|
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~--~~~~~DLv  106 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEWRRVLYRDFL--PFPPDDLV  106 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc---ccccchhhhhhhcccc--cCCCCcEE
Confidence            467899999999997665555432 34689999999999999988665321   1111111100000111  12345999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc-CCCCcChhHHHHHHHHHH
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~  189 (197)
                      ++.......+..  ...++++++.+.+.+  ++++.. +++. ....+..+.+.+.
T Consensus       107 i~s~~L~EL~~~--~r~~lv~~LW~~~~~--~LVlVEpGt~~-Gf~~i~~aR~~l~  157 (274)
T PF09243_consen  107 IASYVLNELPSA--ARAELVRSLWNKTAP--VLVLVEPGTPA-GFRRIAEARDQLL  157 (274)
T ss_pred             EEehhhhcCCch--HHHHHHHHHHHhccC--cEEEEcCCChH-HHHHHHHHHHHHh
Confidence            997765443331  236788888887766  555543 2221 2344555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.09  E-value=2e-05  Score=62.37  Aligned_cols=110  Identities=19%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CCCeEEEEeCCchH----hHHHHhcCCC-----CccEEEEEcCHHHHHHHHhh-cC-CCC-CCC------------CC--
Q psy4592          57 NPKKVLIVGGGDGG----VAREVLKHPS-----VESAYLVEIDNRVIEVSKKY-LP-GMA-VGL------------SD--  110 (197)
Q Consensus        57 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~-~~-~~~-~~~------------~~--  110 (197)
                      .+-+|+-.||+||.    ++..+.+..+     ..+|++.|||..+++.|++- .+ ... .++            .+  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            46799999999996    3333444332     47999999999999999763 11 000 000            00  


Q ss_pred             --------CCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         111 --------PRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       111 --------~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                              ..+.|...|.....+ ..+.||+|+|-...-....+  ...+.++..+..|+|||+|++
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~--~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE--TQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH--HHHHHHHHHHHHhCCCCEEEE
Confidence                    134444455433221 24679999996654232211  137899999999999999998

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.08  E-value=5.4e-05  Score=61.54  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=71.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.++|||||++|+++..+.+.+  ..|++||..+ +....    .      +.++++...+|...+.+. .+++|.++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L----~------~~~~V~h~~~d~fr~~p~-~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSL----M------DTGQVEHLRADGFKFRPP-RKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhh----h------CCCCEEEEeccCcccCCC-CCCCCEEE
Confidence            456899999999999999999885  5999999655 22211    1      356899999998776543 56899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCC--cEEEEEcCCCC-cChhHHHHHHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPG--GIVCSQAGTLW-YSLDCVGNTLQHCA  189 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg--G~l~~~~~~~~-~~~~~~~~~~~~~~  189 (197)
                      +|...    .+    ....+-+.+-|..|  ..++++.--+. .+.+..+..+..+.
T Consensus       276 cDmve----~P----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~  324 (357)
T PRK11760        276 CDMVE----KP----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE  324 (357)
T ss_pred             Eeccc----CH----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99852    11    23334444444443  35666553332 23444454444443

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=98.07  E-value=1.7e-05  Score=55.53  Aligned_cols=62  Identities=23%  Similarity=0.451  Sum_probs=47.7

Q ss_pred             CCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         111 PRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      -.+++..+|+++.++.....+|+|+.|++.+.. ++.+++.++++.++++++|||.+...+..
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nPelWs~e~~~~l~~~~~~~~~l~Tys~a   92 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NPELWSEELFKKLARLSKPGGTLATYSSA   92 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SGGGSSHHHHHHHHHHEEEEEEEEES--B
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-CcccCCHHHHHHHHHHhCCCcEEEEeech
Confidence            357789999999998867899999999976665 55689999999999999999999986533

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=4.1e-05  Score=58.89  Aligned_cols=116  Identities=18%  Similarity=0.233  Sum_probs=77.8

Q ss_pred             ccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE-E
Q psy4592          37 EFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-V  115 (197)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~-~  115 (197)
                      ++..+-...++.++..  ..+++.+||+|+.||+++..++..+ ..+|+++|..-..+..--+         .++++. +
T Consensus        61 SRG~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---------~d~rV~~~  128 (245)
T COG1189          61 SRGGLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---------NDPRVIVL  128 (245)
T ss_pred             ccHHHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---------cCCcEEEE
Confidence            3444444566666653  3567899999999999999988885 4799999987655443222         223443 3


Q ss_pred             EEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         116 HVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       116 ~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...+++..-+. ..+..|+|++|..+-..       ...+..+..+++|+|.++.-.
T Consensus       129 E~tN~r~l~~~~~~~~~d~~v~DvSFISL-------~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         129 ERTNVRYLTPEDFTEKPDLIVIDVSFISL-------KLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             ecCChhhCCHHHcccCCCeEEEEeehhhH-------HHHHHHHHHhcCCCceEEEEe
Confidence            44565543332 24578999999853221       557788899999999877643

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.01  E-value=2e-05  Score=58.83  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=72.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+++|||+|+|+|-.+.+.++.+. ..+...|++|......+.|...     +...+.+...|..   . +...||+|+.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~a-----ngv~i~~~~~d~~---g-~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAA-----NGVSILFTHADLI---G-SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhh-----ccceeEEeecccc---C-CCcceeEEEe
Confidence            367999999999998888777754 7899999999998888888765     3457788888852   2 4578999987


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .-.++..+.    ...++. +++.|+..|..++..
T Consensus       149 gDlfy~~~~----a~~l~~-~~~~l~~~g~~vlvg  178 (218)
T COG3897         149 GDLFYNHTE----ADRLIP-WKDRLAEAGAAVLVG  178 (218)
T ss_pred             eceecCchH----HHHHHH-HHHHHHhCCCEEEEe
Confidence            432221111    144555 888888888777743

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.96  E-value=1.8e-05  Score=56.53  Aligned_cols=57  Identities=12%  Similarity=0.028  Sum_probs=45.9

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      .++|+|||.|.++..+++..+..+++++|.+|.+.+.+++++...    ..++++++...+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n----~~~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN----NLPNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEEeee
Confidence            489999999999999888776679999999999999999987642    124577776653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2730|consensus

Probab=97.96  E-value=5.9e-05  Score=57.34  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~  133 (197)
                      +...|+|.-||.|+.+...+..+  ..|.+||+||.-+..|+.|++-  -|. .+++++++||..+.....   ...+|.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaei--YGI-~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEV--YGV-PDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhcccee--ecC-CceeEEEechHHHHHHHHhhhhheeee
Confidence            56689999999999988888776  6899999999999999999764  233 349999999988765542   335778


Q ss_pred             EEECCC
Q psy4592         134 IITDSS  139 (197)
Q Consensus       134 I~~~~~  139 (197)
                      |+..++
T Consensus       169 vf~spp  174 (263)
T KOG2730|consen  169 VFLSPP  174 (263)
T ss_pred             eecCCC
Confidence            887764

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.96  E-value=6.1e-05  Score=58.22  Aligned_cols=101  Identities=19%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~  135 (197)
                      .+++||-+|=..-.. .+++......+|+++|+|+.+++..++.....     +-+++.+..|.++.++.. .++||+++
T Consensus        44 ~gk~il~lGDDDLtS-lA~al~~~~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTS-LALALTGLPKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HH-HHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHH-HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence            578999999876433 33333333479999999999999888776542     234999999999888764 67999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      .|||....   .+  .-|+......||..|...
T Consensus       118 TDPPyT~~---G~--~LFlsRgi~~Lk~~g~~g  145 (243)
T PF01861_consen  118 TDPPYTPE---GL--KLFLSRGIEALKGEGCAG  145 (243)
T ss_dssp             E---SSHH---HH--HHHHHHHHHTB-STT-EE
T ss_pred             eCCCCCHH---HH--HHHHHHHHHHhCCCCceE
Confidence            99974221   11  458888899999888433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.96  E-value=0.00012  Score=51.71  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             EEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-HhhcC-CceeEEEEC
Q psy4592          61 VLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSEHQ-QEFDVIITD  137 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~~D~I~~~  137 (197)
                      ++|+|||+|... .+....+. ..++++|+++.++..++......    ....+.+..+|.... .+... ..||++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence            999999999865 33332221 47888999999988855543210    111167777776552 33333 479999444


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ...+...     ....+..+.+.|+|+|.+++....
T Consensus       127 ~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         127 LVLHLLP-----PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             eehhcCC-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence            3333322     267899999999999999887644

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.95  E-value=7.9e-06  Score=65.38  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             CCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH----HHHhhcCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF----RFMSEHQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~D  132 (197)
                      .-++||||+|...+=-.|. +.. ..++++.|+|+..++.|+++.... ..+ ..+++++...-.    ..+....+.||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N-~~L-~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERN-PNL-ESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhc-ccc-ccceEEEEcCCccccchhhhcccceee
Confidence            4589999999876533333 333 479999999999999999987652 123 357888755321    11222346899


Q ss_pred             EEEECCCCCCCC
Q psy4592         133 VIITDSSDPVGP  144 (197)
Q Consensus       133 ~I~~~~~~~~~~  144 (197)
                      +.+||||++.+.
T Consensus       180 ftmCNPPFy~s~  191 (299)
T PF05971_consen  180 FTMCNPPFYSSQ  191 (299)
T ss_dssp             EEEE-----SS-
T ss_pred             EEecCCccccCh
Confidence            999999987763

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.92  E-value=0.00011  Score=59.11  Aligned_cols=78  Identities=17%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~  131 (197)
                      .++..++|.-+|.|+.+.++++..+..+++++|.||.+++.+++.+...     ..++++++++..++...    ...++
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~v   93 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKI   93 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence            4556999999999999999998755589999999999999999877532     35899999998875432    13579


Q ss_pred             eEEEECC
Q psy4592         132 DVIITDS  138 (197)
Q Consensus       132 D~I~~~~  138 (197)
                      |.|+.|.
T Consensus        94 DgIl~DL  100 (305)
T TIGR00006        94 DGILVDL  100 (305)
T ss_pred             cEEEEec
Confidence            9999985

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.88  E-value=5.3e-05  Score=62.95  Aligned_cols=104  Identities=28%  Similarity=0.393  Sum_probs=76.6

Q ss_pred             CCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +-+|||-=+|+|.=+...++. .+...|+.-|+|++.++..++|+..+  ++...++++.+.|+...+......||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999999999877666654 45579999999999999999997652  223236899999999887555689999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ||+  ..+      ..|++.+.+.++.||.+.+..
T Consensus       128 DPf--GSp------~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPF--GSP------APFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --S--S--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC--CCc------cHhHHHHHHHhhcCCEEEEec
Confidence            996  122      459999999999999999985

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG0822|consensus

Probab=97.84  E-value=4.9e-05  Score=64.49  Aligned_cols=124  Identities=18%  Similarity=0.275  Sum_probs=86.5

Q ss_pred             CCeEEEEeCCchHhHHHHhc----CCCCccEEEEEcCHHHHHHHHh-hcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVLK----HPSVESAYLVEIDNRVIEVSKK-YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~ve~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ...|+.+|+|-|=+..+..+    .....++++||.+|+++-..+. ++..|     ..+++++.+|.+.+.+ +.++.|
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a-p~eq~D  441 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA-PREQAD  441 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC-chhhcc
Confidence            45788999999977665543    2234689999999988776654 45544     3589999999988653 247899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      ++|+..--..+.+ . .+++.+..+.+.|||+|+.+-.+.+....+-+-..+++.++
T Consensus       442 I~VSELLGSFGDN-E-LSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~  496 (649)
T KOG0822|consen  442 IIVSELLGSFGDN-E-LSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVK  496 (649)
T ss_pred             chHHHhhccccCc-c-CCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHH
Confidence            9998765444433 2 35899999999999999988766554443333344444443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.83  E-value=0.00028  Score=55.61  Aligned_cols=126  Identities=17%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             CeEEEEeCCch--HhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC--eEEEEcchHHHHhh-----cC
Q psy4592          59 KKVLIVGGGDG--GVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR--LTVHVGDGFRFMSE-----HQ  128 (197)
Q Consensus        59 ~~vLdiG~G~G--~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~-----~~  128 (197)
                      ...||||||.=  ....+++. ..+.++|+.||+||-++..++..+..      .++  ..++.+|+++.-.-     ..
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~~~  143 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPEVR  143 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHHHH
Confidence            69999999943  34455543 35679999999999999998887763      345  88999998863211     01


Q ss_pred             Ccee-----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         129 QEFD-----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       129 ~~~D-----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +-+|     .+++....|+.++..- ....++.++..|.||.+++++-.+.....+..+.+...+++.
T Consensus       144 ~~lD~~rPVavll~~vLh~v~D~~d-p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~  210 (267)
T PF04672_consen  144 GLLDFDRPVAVLLVAVLHFVPDDDD-PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA  210 (267)
T ss_dssp             CC--TTS--EEEECT-GGGS-CGCT-HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC
T ss_pred             hcCCCCCCeeeeeeeeeccCCCccC-HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC
Confidence            2333     4555555555544222 278999999999999999997544433444445555555544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.80  E-value=0.00016  Score=55.10  Aligned_cols=101  Identities=23%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC
Q psy4592          61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD  140 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~  140 (197)
                      |.||||--|.++.++.+.....+++++|+++.-++.|+++....  ++ ..++++..+|..+.++. .+..|.|+.... 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l-~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM-   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GL-EDRIEVRLGDGLEVLKP-GEDVDTIVIAGM-   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T--TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-cccEEEEECCcccccCC-CCCCCEEEEecC-
Confidence            68999999999999999887778999999999999999987653  22 35899999998776654 233788887653 


Q ss_pred             CCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         141 PVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       141 ~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                          ...+ ..+.+++....++..-.|+++.
T Consensus        76 ----GG~l-I~~ILe~~~~~~~~~~~lILqP  101 (205)
T PF04816_consen   76 ----GGEL-IIEILEAGPEKLSSAKRLILQP  101 (205)
T ss_dssp             -----HHH-HHHHHHHTGGGGTT--EEEEEE
T ss_pred             ----CHHH-HHHHHHhhHHHhccCCeEEEeC
Confidence                1111 2567777777777767788763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3987|consensus

Probab=97.77  E-value=2.7e-05  Score=58.67  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.++||+|+|.|.++..++-..  .+|++.|.|..|....++.           +..+.  .+.++.. .+-+||+|.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl--~~~ew~~-t~~k~dli~  174 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVL--TEIEWLQ-TDVKLDLIL  174 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCcee--eehhhhh-cCceeehHH
Confidence            356899999999999998877554  5889999999998877652           11222  1223333 345799998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCC-CcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRP-GGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkp-gG~l~~~  170 (197)
                      +-....-..++    -++++.++.+|+| +|..++.
T Consensus       175 clNlLDRc~~p----~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  175 CLNLLDRCFDP----FKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHHhhcCh----HHHHHHHHHHhccCCCcEEEE
Confidence            74332111122    5688999999999 8877664

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.74  E-value=8.1e-05  Score=53.39  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhc-----CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLK-----HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~-----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  130 (197)
                      .++.+|+|+|||.|+++..++.     . +..++++||.++..++.+.++...+.... ..++++..++..+...  ...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~   99 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS--SDP   99 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc--cCC
Confidence            4567999999999999999888     5 45899999999999998887755432111 1356666666443221  344


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .++++.--   ...+   .++..++...+   ++-.+++.+
T Consensus       100 ~~~~vgLH---aCG~---Ls~~~l~~~~~---~~~~~l~~v  131 (141)
T PF13679_consen  100 PDILVGLH---ACGD---LSDRALRLFIR---PNARFLVLV  131 (141)
T ss_pred             CeEEEEee---cccc---hHHHHHHHHHH---cCCCEEEEc
Confidence            55555322   2211   12556665555   666555544

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00038  Score=56.90  Aligned_cols=102  Identities=26%  Similarity=0.347  Sum_probs=83.3

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+|+|-=+|+|.=+...+...+...++.=|++|+.++++++|...+    ...+..++..|+...+......||+|=.|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhcCCCccEEecC
Confidence            77999999999988877776655458999999999999999998753    24466777799988877656889999999


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+  .+|      ..|++.+.+.++.||++.+..
T Consensus       129 PF--GSP------aPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PF--GSP------APFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CC--CCC------chHHHHHHHHhhcCCEEEEEe
Confidence            85  223      348899999999999999975

>KOG2352|consensus

Probab=97.69  E-value=0.00049  Score=58.11  Aligned_cols=144  Identities=17%  Similarity=0.219  Sum_probs=93.9

Q ss_pred             CCCcEEEEcCeeeeec-cchhhHHHHHHhhcccC-C-CCCC-eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH
Q psy4592          22 EFGTALILDGIIQCTE-FDEFSYSEMIAFLPLCS-H-PNPK-KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS   97 (197)
Q Consensus        22 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a   97 (197)
                      .++...++|....... .....|.+.+.....+. . .... ++|.+|||+-.+...+.+.+ ...|+.+|+|+..++.+
T Consensus         9 ~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m   87 (482)
T KOG2352|consen    9 SFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAM   87 (482)
T ss_pred             ccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHH
Confidence            3555566665544332 22233444443322211 1 2223 89999999998888777764 47999999999999888


Q ss_pred             HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC--CCccc----ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592          98 KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG--PAESL----FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~--~~~~l----~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ......     ..+-..+...|+.. +...+++||+|+.-+.....  .....    .....+.++.++|++||+++..+
T Consensus        88 ~~~~~~-----~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen   88 QVRNAK-----ERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             Hhcccc-----CCcceEEEEecchh-ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            765432     34678888888765 44557899999987765332  11111    12567889999999999977765


Q ss_pred             C
Q psy4592         172 G  172 (197)
Q Consensus       172 ~  172 (197)
                      .
T Consensus       162 l  162 (482)
T KOG2352|consen  162 L  162 (482)
T ss_pred             e
Confidence            4

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.64  E-value=1.6e-05  Score=61.43  Aligned_cols=83  Identities=19%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC-----CCeEEEEcchHHHHhhcCCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD-----PRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+|||.-+|.|.-+..++.. + ++|+++|-+|-+..+.+.-+.........     .+++++++|+.+++.....+||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            38999999999988877754 3 79999999998877665432111000011     37999999999998855789999


Q ss_pred             EEECCCCCCC
Q psy4592         134 IITDSSDPVG  143 (197)
Q Consensus       134 I~~~~~~~~~  143 (197)
                      |+.||+++..
T Consensus       155 VY~DPMFp~~  164 (234)
T PF04445_consen  155 VYFDPMFPER  164 (234)
T ss_dssp             EEE--S----
T ss_pred             EEECCCCCCc
Confidence            9999987653

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.62  E-value=0.00034  Score=56.38  Aligned_cols=87  Identities=20%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .+.+..+.   ..++..++|.-.|.|+.+.++++..+.++++++|.||++++.+++.+..     ..+++.+++++..+.
T Consensus        10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~~~r~~~~~~~F~~l   81 (310)
T PF01795_consen   10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----FDDRFIFIHGNFSNL   81 (310)
T ss_dssp             HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----CCTTEEEEES-GGGH
T ss_pred             HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----ccceEEEEeccHHHH
Confidence            44555554   2455699999999999999999876669999999999999999998764     246899999887664


Q ss_pred             Hh---hc--CCceeEEEECC
Q psy4592         124 MS---EH--QQEFDVIITDS  138 (197)
Q Consensus       124 ~~---~~--~~~~D~I~~~~  138 (197)
                      ..   ..  ..++|.|+.|.
T Consensus        82 ~~~l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   82 DEYLKELNGINKVDGILFDL  101 (310)
T ss_dssp             HHHHHHTTTTS-EEEEEEE-
T ss_pred             HHHHHHccCCCccCEEEEcc
Confidence            33   22  35899999985

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.61  E-value=0.00038  Score=59.96  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQ  128 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~  128 (197)
                      ...+|+|-.||+|++.....+..+    ...++|.|+++....+|+.+.-..  +.+. +.....+|-..-...    ..
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh--gi~~-~~~i~~~dtl~~~~~~~~~~~  262 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH--GIEG-DANIRHGDTLSNPKHDDKDDK  262 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh--CCCc-cccccccccccCCcccccCCc
Confidence            446999999999998776665322    367999999999999999885431  1121 345555553322111    23


Q ss_pred             CceeEEEECCCCC-C--CCC-----------------cccc-cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         129 QEFDVIITDSSDP-V--GPA-----------------ESLF-QASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       129 ~~~D~I~~~~~~~-~--~~~-----------------~~l~-~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+||+|+++||.. .  ...                 ..-- ...|++.+...|+|||+..+....
T Consensus       263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            6799999999864 1  110                 0000 146899999999999876666544

>KOG1269|consensus

Probab=97.53  E-value=9.9e-05  Score=60.94  Aligned_cols=106  Identities=20%  Similarity=0.161  Sum_probs=73.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++..++|+|||-|....++.... .+.+++++.++.-+..+......  .. -..+..++.+|+.. .+..+..||.+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~--~~-l~~k~~~~~~~~~~-~~fedn~fd~v~  183 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKK--AY-LDNKCNFVVADFGK-MPFEDNTFDGVR  183 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHH--HH-hhhhcceehhhhhc-CCCCccccCcEE
Confidence            345589999999999998877653 47999999998776655443211  01 12244456666544 234467899998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.-..-+.+..    ...+++++++++|||+++..
T Consensus       184 ~ld~~~~~~~~----~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  184 FLEVVCHAPDL----EKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             EEeecccCCcH----HHHHHHHhcccCCCceEEeH
Confidence            75443334443    67999999999999999985

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.51  E-value=0.00069  Score=48.27  Aligned_cols=102  Identities=21%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cC-CceeEEEECC-CCCCCCCcccc-----cHHHH
Q psy4592          83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQ-QEFDVIITDS-SDPVGPAESLF-----QASYF  154 (197)
Q Consensus        83 ~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~~D~I~~~~-~~~~~~~~~l~-----~~~~~  154 (197)
                      +|+++||.++.++..++.+...  + ...+++++..+=.. +.. -. ++.|+++.|. ..|.+ +..+.     |-..+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~--~-~~~~v~li~~sHe~-l~~~i~~~~v~~~iFNLGYLPgg-Dk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA--G-LEDRVTLILDSHEN-LDEYIPEGPVDAAIFNLGYLPGG-DKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT--T--GSGEEEEES-GGG-GGGT--S--EEEEEEEESB-CTS--TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhc--C-CCCcEEEEECCHHH-HHhhCccCCcCEEEEECCcCCCC-CCCCCcCcHHHHHHH
Confidence            5889999999999999987652  1 22479998776333 333 23 4899999985 33443 22222     24688


Q ss_pred             HHHHhhcCCCcEEEEEcCCCCcC-hhHHHHHHHHHH
Q psy4592         155 ELMSRALRPGGIVCSQAGTLWYS-LDCVGNTLQHCA  189 (197)
Q Consensus       155 ~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~  189 (197)
                      +.+.++|+|||++.+..+..+.. .+....+.++++
T Consensus        76 ~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~  111 (140)
T PF06962_consen   76 EAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA  111 (140)
T ss_dssp             HHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987553332 233444444443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.46  E-value=0.00072  Score=51.33  Aligned_cols=115  Identities=22%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhc----CCCCccEEEEEcCHHHHHH-HHhhcCCCCCCCCCCCe
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK----HPSVESAYLVEIDNRVIEV-SKKYLPGMAVGLSDPRL  113 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~~~~~  113 (197)
                      +...|++++..+      +|+.|+++|...|+.+..++.    ..+.++|.+||++...... +.+..+      -.+++
T Consensus        20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp------~~~rI   87 (206)
T PF04989_consen   20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP------MSPRI   87 (206)
T ss_dssp             HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred             HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc------ccCce
Confidence            344556555443      678999999999998876553    2355899999997655432 223222      23799


Q ss_pred             EEEEcchHHH--Hhh---c--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         114 TVHVGDGFRF--MSE---H--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       114 ~~~~~d~~~~--~~~---~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++++||..+.  +..   .  .....+|+.|....+. +  .  ..-|+....++++|+++++.
T Consensus        88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~-h--v--l~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen   88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHE-H--V--LAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             EEEES-SSSTHHHHTSGSS----SSEEEEESS----S-S--H--HHHHHHHHHT--TT-EEEET
T ss_pred             EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHH-H--H--HHHHHHhCccCCCCCEEEEE
Confidence            9999987532  111   1  2344577777742222 1  1  44566789999999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.45  E-value=0.0016  Score=49.64  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +...++.||||=-++++.++.+..+...+++.|+++.-++.|.++++..+   ..++++...+|....+.. .+.+|.|+
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv   90 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV   90 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence            34456999999999999999998888899999999999999999987632   346899999998554433 45799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ....-.     .+ -.+++++-.+.|+.-=.++++
T Consensus        91 IAGMGG-----~l-I~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          91 IAGMGG-----TL-IREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             EeCCcH-----HH-HHHHHHHhhhhhcCcceEEEC
Confidence            876421     11 156777777777765667775

>PRK11524 putative methyltransferase; Provisional

Probab=97.44  E-value=0.0012  Score=53.02  Aligned_cols=61  Identities=18%  Similarity=0.298  Sum_probs=45.0

Q ss_pred             CCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCC-----cc-------cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         111 PRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPA-----ES-------LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~-----~~-------l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+..++++|+.+.+.. .++++|+|++|||......     ..       -+..+++.++.++|||||.+++..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            4568999999997754 4679999999998643111     00       011468899999999999999864

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.43  E-value=0.0004  Score=55.44  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDS  138 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~  138 (197)
                      +|+|+.||.|++...+...+ ...+.++|+++..++..+++++..          ++++|+.+..... ...+|+|+.++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence            68999999999988877664 467899999999999999987531          4556666544332 45799999999


Q ss_pred             CCCC-C--------CC--cccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592         139 SDPV-G--------PA--ESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS  190 (197)
Q Consensus       139 ~~~~-~--------~~--~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~  190 (197)
                      |... +        .+  ..|+ .+++ .+.+.++|.=+++=|+.....  ....+..+.+.+++
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L~-~~~~-~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~  133 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTLF-FEII-RILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEE  133 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHHH-HHHH-HHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHh
Confidence            8532 1        01  1111 2333 344556887555544422111  13455566665553

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG3201|consensus

Probab=97.39  E-value=0.00026  Score=51.36  Aligned_cols=125  Identities=17%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             CCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeEEE
Q psy4592          58 PKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDVII  135 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~I~  135 (197)
                      +++||++|.|.-+++-. ++...+...|...|=+++.++..++....... .....+.+..-+..... .....+||+|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            46999999997666544 44455667899999999988888775432100 01122322222211111 11245899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +.-+.......    +.+.+.++..|+|.|..++.+..   +.+.++.+.+....
T Consensus       109 aADClFfdE~h----~sLvdtIk~lL~p~g~Al~fsPR---Rg~sL~kF~de~~~  156 (201)
T KOG3201|consen  109 AADCLFFDEHH----ESLVDTIKSLLRPSGRALLFSPR---RGQSLQKFLDEVGT  156 (201)
T ss_pred             eccchhHHHHH----HHHHHHHHHHhCcccceeEecCc---ccchHHHHHHHHHh
Confidence            85443232221    67889999999999997775422   34556665555443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.38  E-value=0.00089  Score=50.88  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhc--CCCCccEEEEEcCHHHHHHHHhhcCCCC-CCC-----------------------
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLK--HPSVESAYLVEIDNRVIEVSKKYLPGMA-VGL-----------------------  108 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~-----------------------  108 (197)
                      ...|-++.|-+||+|++..-+..  ...-..+.+-|+|++++++|++|+..+. .++                       
T Consensus        49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl  128 (246)
T PF11599_consen   49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL  128 (246)
T ss_dssp             S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            35677999999999998766543  3333689999999999999999864431 111                       


Q ss_pred             --------------CCCCeEEEEcchHHHHhh----cCCceeEEEECCCCCCCCCcc-----cccHHHHHHHHhhcCCCc
Q psy4592         109 --------------SDPRLTVHVGDGFRFMSE----HQQEFDVIITDSSDPVGPAES-----LFQASYFELMSRALRPGG  165 (197)
Q Consensus       109 --------------~~~~~~~~~~d~~~~~~~----~~~~~D~I~~~~~~~~~~~~~-----l~~~~~~~~~~~~LkpgG  165 (197)
                                    ......+.+.|+.+.-..    .....|+|+.|.|......++     -....+++.++.+|-+++
T Consensus       129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s  208 (246)
T PF11599_consen  129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS  208 (246)
T ss_dssp             HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred             HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence                          112466777777653321    133469999998854332211     123679999999996666


Q ss_pred             EEEE
Q psy4592         166 IVCS  169 (197)
Q Consensus       166 ~l~~  169 (197)
                      ++++
T Consensus       209 VV~v  212 (246)
T PF11599_consen  209 VVAV  212 (246)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6666

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.36  E-value=0.0019  Score=51.54  Aligned_cols=78  Identities=21%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~  130 (197)
                      ++....+|.-.|.|+.+.++++.++ ..+++++|.||.+++.|++.+...     .+++.++++...+....    ...+
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~   96 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGK   96 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCc
Confidence            4557999999999999999998765 456999999999999999987642     46899999987665432    1458


Q ss_pred             eeEEEECC
Q psy4592         131 FDVIITDS  138 (197)
Q Consensus       131 ~D~I~~~~  138 (197)
                      +|-|+.|.
T Consensus        97 vDGiL~DL  104 (314)
T COG0275          97 VDGILLDL  104 (314)
T ss_pred             eeEEEEec
Confidence            99999974

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.35  E-value=0.00048  Score=53.62  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.+.+|+|||||.==++.-+....+...+.++|||..+++...+.+...     ..+.++...|.....  ..+..|+.+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~~--~~~~~DlaL  176 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSDP--PKEPADLAL  176 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTSH--TTSEESEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeeccC--CCCCcchhh
Confidence            5578999999998656655455555679999999999999999887653     367888888865432  246788877


Q ss_pred             EC
Q psy4592         136 TD  137 (197)
Q Consensus       136 ~~  137 (197)
                      .-
T Consensus       177 ll  178 (251)
T PF07091_consen  177 LL  178 (251)
T ss_dssp             EE
T ss_pred             HH
Confidence            54

>KOG1099|consensus

Probab=97.32  E-value=0.00032  Score=53.78  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=74.6

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC------CCc---cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP------SVE---SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR------  122 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~------~~~---~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~------  122 (197)
                      -++|+|++...|.|+..+.+..      ...   .|++||+.+-.        +       -+.+.-+++|+..      
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae~  106 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAEA  106 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHHH
Confidence            4699999999999988777531      111   38999986521        1       1345555566542      


Q ss_pred             HHhh-cCCceeEEEECCC-CCCCC-C--cccc---cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         123 FMSE-HQQEFDVIITDSS-DPVGP-A--ESLF---QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       123 ~~~~-~~~~~D~I~~~~~-~~~~~-~--~~l~---~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      .+.. ..++.|+|++|.. .-.+. +  ..+.   -...+.....+|||||.|+-    -.++.+...-++..++.+|..
T Consensus       107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~k  182 (294)
T KOG1099|consen  107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFKK  182 (294)
T ss_pred             HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhhc
Confidence            2332 2569999999875 22221 1  1000   02234455689999999996    334455556677788888887


Q ss_pred             ccC
Q psy4592         195 LHC  197 (197)
Q Consensus       195 v~~  197 (197)
                      |.|
T Consensus       183 v~~  185 (294)
T KOG1099|consen  183 VTC  185 (294)
T ss_pred             eee
Confidence            754

>KOG1596|consensus

Probab=97.30  E-value=0.0024  Score=49.41  Aligned_cols=106  Identities=20%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCH----HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--c
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDN----RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--H  127 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~  127 (197)
                      .+++.+||=+|+++|.....+.. ..+...|++||.++    +.+..|+++          +|+-.++.||+-..+.  .
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----------tNiiPIiEDArhP~KYRml  223 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----------TNIIPIIEDARHPAKYRML  223 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------CCceeeeccCCCchheeee
Confidence            45678999999999988777765 35667999999886    355566553          4677788887643222  1


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      -.-.|+||+|.+.+...      .-..-++...||+||-|+++.-.++.
T Consensus       224 VgmVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikanci  266 (317)
T KOG1596|consen  224 VGMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCI  266 (317)
T ss_pred             eeeEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccc
Confidence            34689999998643321      23445677889999999998754443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.20  E-value=0.00022  Score=56.06  Aligned_cols=112  Identities=16%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------------CC-------------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------------DP-------------  111 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------------~~-------------  111 (197)
                      ++.++||||||.-.... +....-..+|+..|..+.-.+..++++..- +.++            ..             
T Consensus        56 ~g~~llDiGsGPtiy~~-lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQL-LSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGG-TTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhh-hhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            45799999999854322 222212258999999999988888886542 1110            00             


Q ss_pred             Ce-EEEEcchHHHHhhc-----CCceeEEEECCCCCC-CCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         112 RL-TVHVGDGFRFMSEH-----QQEFDVIITDSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       112 ~~-~~~~~d~~~~~~~~-----~~~~D~I~~~~~~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+ +++.+|..+.-+..     .++||+|++...... ..+..-+ ...++++.++|||||.|++..
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y-~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY-RRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH-HHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH-HHHHHHHHHHcCCCcEEEEEE
Confidence            12 24455654322211     125999988775422 2332222 567889999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1331|consensus

Probab=97.12  E-value=0.00037  Score=55.02  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+..++|+|||.|-...   .. +.+.+.++|+....+..+++.-        ..  ....+|+.. ++....+||.+++
T Consensus        45 ~gsv~~d~gCGngky~~---~~-p~~~~ig~D~c~~l~~~ak~~~--------~~--~~~~ad~l~-~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG---VN-PLCLIIGCDLCTGLLGGAKRSG--------GD--NVCRADALK-LPFREESFDAALS  109 (293)
T ss_pred             CcceeeecccCCcccCc---CC-CcceeeecchhhhhccccccCC--------Cc--eeehhhhhc-CCCCCCccccchh
Confidence            35689999999996532   22 5578999999988888776631        11  466678765 3455789999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      -...|+.... .-....++++.+.|+|||...+++..
T Consensus       110 iavihhlsT~-~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  110 IAVIHHLSTR-ERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             hhhhhhhhhH-HHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            8776664221 11367899999999999987776533

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.12  E-value=0.0063  Score=49.76  Aligned_cols=96  Identities=22%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++++|+.+|+| .|.++..+++..+ .+|++++.+++-.+.|++.-.         ..-+...| .+....-.+.+|+|
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA---------d~~i~~~~-~~~~~~~~~~~d~i  233 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA---------DHVINSSD-SDALEAVKEIADAI  233 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC---------cEEEEcCC-chhhHHhHhhCcEE
Confidence            567899999997 3456777777656 899999999999999988632         12222112 12222212349999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...+           ...+....+.|+++|.+++....
T Consensus       234 i~tv~-----------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         234 IDTVG-----------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EECCC-----------hhhHHHHHHHHhcCCEEEEECCC
Confidence            97663           23557788999999999998754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.11  E-value=0.0026  Score=48.54  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hh-hcCCceeEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MS-EHQQEFDVII  135 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~~D~I~  135 (197)
                      +.++|||||=+......   ..+-..++.||+++.--                   .+.+.|..+. ++ ...++||+|.
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~~-------------------~I~qqDFm~rplp~~~~e~FdvIs  109 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQHP-------------------GILQQDFMERPLPKNESEKFDVIS  109 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCCCC-------------------CceeeccccCCCCCCcccceeEEE
Confidence            36999999976554332   22335799999977221                   2333444332 12 1357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcE-----EEEEcCCC------CcChhHHHHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGI-----VCSQAGTL------WYSLDCVGNTLQH  187 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~-----l~~~~~~~------~~~~~~~~~~~~~  187 (197)
                      +......-|.+.. .-+.+..+.+.|+|+|.     +++....+      ....+.++.++..
T Consensus       110 ~SLVLNfVP~p~~-RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~  171 (219)
T PF11968_consen  110 LSLVLNFVPDPKQ-RGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES  171 (219)
T ss_pred             EEEEEeeCCCHHH-HHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh
Confidence            9877655554421 36799999999999999     88776443      2334455554443

>KOG2671|consensus

Probab=97.08  E-value=0.00052  Score=55.56  Aligned_cols=114  Identities=19%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH-------HHhhcCCCCCCCCCCCeEEEEcchHHHHhhc
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV-------SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (197)
                      .++++.|+|---|||++....++.+  +.+.|.|||-.++..       .+.|+.+-+  ....-+.+..+|...-.-..
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLRS  281 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchhh
Confidence            3677899999999999987777664  689999999888763       234444311  11224667777754322222


Q ss_pred             CCceeEEEECCCCCCC------------------------CCcccc-----cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         128 QQEFDVIITDSSDPVG------------------------PAESLF-----QASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~------------------------~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...||+|++|||....                        |....+     -...+.-..++|..||+++++..
T Consensus       282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            5689999999984331                        000000     02345666799999999998864

>PRK13699 putative methylase; Provisional

Probab=96.93  E-value=0.0023  Score=49.67  Aligned_cols=59  Identities=20%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             eEEEEcchHHHHhh-cCCceeEEEECCCCCCC----CCc----c---cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         113 LTVHVGDGFRFMSE-HQQEFDVIITDSSDPVG----PAE----S---LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       113 ~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~----~~~----~---l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+++++|..+.+.. +++++|+|+.|||....    ...    .   -+..+++.+++|+|||||.+++..
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            36788999998766 57899999999987431    000    0   112467889999999999988743

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.006  Score=49.81  Aligned_cols=111  Identities=20%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh-cCCce
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE-HQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~~  131 (197)
                      ...|+++||+|.|.|.-..++..-.| ...++.+|.+|..-+....-....    .........+|...- ++. ..+.|
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----~t~~td~r~s~vt~dRl~lp~ad~y  186 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----STEKTDWRASDVTEDRLSLPAADLY  186 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----ccccCCCCCCccchhccCCCcccee
Confidence            34578999999998865554444333 257888999987655443322111    011112222222211 111 14567


Q ss_pred             eEEEE-CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIIT-DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~-~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++++ +--.+.+....+  ..+++.+..++.|||.|++..
T Consensus       187 tl~i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         187 TLAIVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             ehhhhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEe
Confidence            77765 333333332222  348899999999999999864

>PTZ00357 methyltransferase; Provisional

Probab=96.84  E-value=0.0058  Score=54.04  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=69.2

Q ss_pred             eEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHH---hhcCCCCCC--CCCCCeEEEEcchHHHHhhc---
Q psy4592          60 KVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSK---KYLPGMAVG--LSDPRLTVHVGDGFRFMSEH---  127 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~---~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~---  127 (197)
                      .|+.+|+|-|-+....++.    .-..++++||.+|..+...+   ++...|...  .-+..++++..|.+++-...   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999877655442    22368999999965332222   234455210  01357999999999873221   


Q ss_pred             -------CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC----CcE
Q psy4592         128 -------QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP----GGI  166 (197)
Q Consensus       128 -------~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp----gG~  166 (197)
                             -+++|+||+..--..+.+ .| ++|.|.-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDN-EL-SPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDN-EL-SPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccc-cC-CHHHHHHHHHhhhhhcccccc
Confidence                   137999999765444433 23 48999999999987    775

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.82  E-value=0.0015  Score=48.18  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             EEEeCCchHhHHHHhcCCC-CccEEEEEc--CHHHHHHHH---hhcCCCCCCCCCCCeEE-EEcchHHHHhh---cCCce
Q psy4592          62 LIVGGGDGGVAREVLKHPS-VESAYLVEI--DNRVIEVSK---KYLPGMAVGLSDPRLTV-HVGDGFRFMSE---HQQEF  131 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~-~~~v~~ve~--~~~~~~~a~---~~~~~~~~~~~~~~~~~-~~~d~~~~~~~---~~~~~  131 (197)
                      |-+|=|.-+++..+++..+ ...+++.-.  ..++.+...   .++..+    ....+.+ +-.|+...-..   ...+|
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L----~~~g~~V~~~VDat~l~~~~~~~~~~F   76 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL----RELGVTVLHGVDATKLHKHFRLKNQRF   76 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH----hhcCCccccCCCCCcccccccccCCcC
Confidence            4578888888888887644 455555444  444443322   333322    1223333 33455543222   25789


Q ss_pred             eEEEECCCCCCC----------CCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         132 DVIITDSSDPVG----------PAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       132 D~I~~~~~~~~~----------~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |.|+.|.|....          .+..|. ..||+.+.++|+++|.+.+....
T Consensus        77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll-~~Ff~Sa~~~L~~~G~IhVTl~~  127 (166)
T PF10354_consen   77 DRIIFNFPHVGGGSEDGKRNIRLNRELL-RGFFKSASQLLKPDGEIHVTLKD  127 (166)
T ss_pred             CEEEEeCCCCCCCccchhHHHHHHHHHH-HHHHHHHHHhcCCCCEEEEEeCC
Confidence            999999986441          111222 67999999999999999987643

>KOG1253|consensus

Probab=96.79  E-value=0.0019  Score=54.70  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=81.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCcee
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D  132 (197)
                      ++-+|||-=+++|.-++..++. .+..++++-|.+++.++..+++.....   ....++....|+...+-..   ...||
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhccccccccc
Confidence            4568999999999877666654 344689999999999999999876531   2356888889988765443   37899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|=.||+-   ..     ..|++.+.+.++.||.+++..
T Consensus       186 vIDLDPyG---s~-----s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  186 VIDLDPYG---SP-----SPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             eEecCCCC---Cc-----cHHHHHHHHHhhcCCEEEEEe
Confidence            99999852   21     459999999999999999875

>PHA01634 hypothetical protein

Probab=96.72  E-value=0.0046  Score=43.19  Aligned_cols=74  Identities=14%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      -..++|+|||.+-|..+++.+..+. ..|+++|.+|...+.++.+....      .-+.-..+-  ..++..-++||+.+
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n------nI~DK~v~~--~eW~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF------NICDKAVMK--GEWNGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh------eeeeceeec--ccccccCCCcceEE
Confidence            3567999999999999999887754 79999999999999998876531      011111111  11333457899888


Q ss_pred             ECC
Q psy4592         136 TDS  138 (197)
Q Consensus       136 ~~~  138 (197)
                      +|.
T Consensus        98 iDC  100 (156)
T PHA01634         98 MDC  100 (156)
T ss_pred             EEc
Confidence            876

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.72  E-value=0.025  Score=46.70  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHH-hhc-CCceeE
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFM-SEH-QQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~-~~~-~~~~D~  133 (197)
                      +.+|+.+|+|. |.++..+++..+..+++++|.+++-+++|++....       ..+..... +..... ... ...+|+
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~  241 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV  241 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence            34899999996 44446667777778999999999999999996532       11111111 222222 222 236999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++-..-          ....++++.++++|+|.+++....
T Consensus       242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         242 VIEAVG----------SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             EEECCC----------CHHHHHHHHHHhcCCCEEEEEecc
Confidence            985442          256889999999999999987643

>KOG1098|consensus

Probab=96.68  E-value=0.0034  Score=54.57  Aligned_cols=120  Identities=16%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-----hh--c
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-----SE--H  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~  127 (197)
                      .+.+.|||+||..|+|.....+..| ..-|+|||+-|--               ..+++.-++.|+..-.     ..  .
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------------p~~~c~t~v~dIttd~cr~~l~k~l~  107 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------------PIPNCDTLVEDITTDECRSKLRKILK  107 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence            4667999999999999887776544 3578999997632               1234555555554321     11  1


Q ss_pred             CCceeEEEECCCCCCCCCc-------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         128 QQEFDVIITDSSDPVGPAE-------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~-------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      .-+.|+|++|.+-..+..+       ..++-..++.+...|..||.|+.-+..    .+....++..+.+.|..
T Consensus       108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr----s~dy~~ll~v~~qLf~k  177 (780)
T KOG1098|consen  108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR----SEDYNGLLRVFGQLFKK  177 (780)
T ss_pred             hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc----CCcchHHHHHHHHHHHH
Confidence            3467999998864333211       111233556667899999998875543    33334444444444433

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.60  E-value=0.0028  Score=45.31  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             HHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        46 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      .+.+.......-+.-|||+|.|+|..=-.+.+..+...|.++|-.-..-.   ..        -++.-.++.||+++.++
T Consensus        17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp---~~--------~P~~~~~ilGdi~~tl~   85 (160)
T PF12692_consen   17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP---SS--------TPPEEDLILGDIRETLP   85 (160)
T ss_dssp             HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G---GG-----------GGGEEES-HHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC---CC--------CCchHheeeccHHHHhH
Confidence            34444333333446899999999998888888888889999996322211   11        12445689999998877


Q ss_pred             h---cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         126 E---HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       126 ~---~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .   ...+.-++..|.-.+...........+-..+..+|.|||.++-
T Consensus        86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            5   2556777877774333211111112233456789999999885

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.56  E-value=0.01  Score=44.64  Aligned_cols=113  Identities=14%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHH----HHHHh--hcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVI----EVSKK--YLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~----~~a~~--~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      ...+.+.+|+|+=.|.|.++..+... .+...|+++-.++...    +-.+.  -..+.    ...|.+.+-.+..... 
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN~e~~~~~~~A~~-  118 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYANVEVIGKPLVALG-  118 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhhhhhhCCcccccC-
Confidence            33467789999999999999988764 3334665554332211    10010  01000    1124444433332222 


Q ss_pred             hcCCceeEEEECCCCCCCCCcc---cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAES---LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~---l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ..++.|+++.+...|......   -....+...+++.|||||++++.-
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence             245667776644433321111   122678899999999999999863

>KOG0024|consensus

Probab=96.40  E-value=0.03  Score=45.36  Aligned_cols=101  Identities=19%  Similarity=0.224  Sum_probs=66.2

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE--EEcchHHHHhhc--CCc
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV--HVGDGFRFMSEH--QQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~--~~~  130 (197)
                      +.+.+||.+|+|. |-.+..+++..+..+|+.+|++++-+++|++ +..-    .-.+.+-  ...+..+.+...  ...
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~----~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT----VTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe----EEeeccccccHHHHHHHHHhhccccC
Confidence            4678999999995 5555667777787899999999999999999 4321    0001111  112333333332  245


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+.+...-.          +..++.+...++.+|.+++..
T Consensus       243 ~d~~~dCsG~----------~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  243 PDVTFDCSGA----------EVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CCeEEEccCc----------hHHHHHHHHHhccCCEEEEec
Confidence            8888754411          345677788999999977764

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.40  E-value=0.016  Score=45.88  Aligned_cols=105  Identities=20%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      .+++|+.+|--. -.+.+++..+-..++.++|||+..++...+...+.    ...+++.+.-|.++.++. ...+||+.+
T Consensus       152 ~gK~I~vvGDDD-Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVGDDD-LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEcCch-hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence            567899999543 33333333333379999999999999888876653    345688999998876665 257999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCC---cEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPG---GIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg---G~l~~~~  171 (197)
                      .|||.....-     ..|+..=-..||..   |+|.+..
T Consensus       227 TDPpeTi~al-----k~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         227 TDPPETIKAL-----KLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             cCchhhHHHH-----HHHHhccHHHhcCCCccceEeeee
Confidence            9997422110     34555555677777   7777653

>KOG2798|consensus

Probab=96.40  E-value=0.009  Score=48.04  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH-------HHHhh-----cCCCC---------CCC-------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE-------VSKKY-----LPGMA---------VGL-------  108 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~-------~a~~~-----~~~~~---------~~~-------  108 (197)
                      .+.+||.-|||.|.++..++..+..++  |=|.+--|+=       ..+..     .+..+         .++       
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~q--GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQ--GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhccccc--ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            345899999999999999887754333  3254443331       11110     00000         000       


Q ss_pred             --------CCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         109 --------SDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       109 --------~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                              .....++..||..+.....  .+.||+|+.+.+.....+-    -++++.+.++|||||+.+=
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni----leYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI----LEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH----HHHHHHHHHhccCCcEEEe
Confidence                    0012223346655544432  3479999988654333332    5799999999999998663

>KOG2793|consensus

Probab=96.37  E-value=0.01  Score=46.48  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC--CCeEEEE---cchHHHHhhcCCc-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--PRLTVHV---GDGFRFMSEHQQE-  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~-  130 (197)
                      ++.+||++|+|+|-.+..++.... ..+..-|+ +..++..+.+.......++.  ..+.+..   +++.+. ....+. 
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~~~~~  162 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFRLPNP  162 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc-ceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhccCCc
Confidence            456899999999987777777544 56666665 33444333331110000011  1333332   222221 111233 


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +|+|++.-........    +.+...++..|..+|.+++
T Consensus       163 ~DlilasDvvy~~~~~----e~Lv~tla~ll~~~~~i~l  197 (248)
T KOG2793|consen  163 FDLILASDVVYEEESF----EGLVKTLAFLLAKDGTIFL  197 (248)
T ss_pred             ccEEEEeeeeecCCcc----hhHHHHHHHHHhcCCeEEE
Confidence            8999984432222221    4577888899999995544

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.27  E-value=0.014  Score=47.56  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=52.5

Q ss_pred             EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC
Q psy4592          61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD  140 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~  140 (197)
                      |+|+.||.|++..-+...+ ...+.++|+++...+..+.|++.          .++.+|+.+........+|+++..+|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            5899999999998887664 34667899999999999988741          345578777544333468999998875

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1501|consensus

Probab=96.27  E-value=0.0059  Score=51.21  Aligned_cols=56  Identities=18%  Similarity=0.290  Sum_probs=43.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      ..|||||+|||-++....+.+ ...+|++|.-..|.+.|++-..+.  +. .++++++.-
T Consensus        68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~-SdkI~vInk  123 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GM-SDKINVINK  123 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CC-ccceeeecc
Confidence            479999999998887766665 468999999999999999976652  22 356777643

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.26  E-value=0.043  Score=44.93  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+||..|+| .|.++..+++..+..++++++.+++-++.+++. ..      ..-+.....+..+.... .+.+|+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga------~~vi~~~~~~~~~~~~~-~g~~D~vi  240 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA------DKLVNPQNDDLDHYKAE-KGYFDVSF  240 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC------cEEecCCcccHHHHhcc-CCCCCEEE
Confidence            46799999875 233445566665544789999999999988773 21      00111111233332222 24589888


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -..-     .     ...++.+.+.|+++|.++...
T Consensus       241 d~~G-----~-----~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EVSG-----H-----PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             ECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            5431     1     346678889999999999865

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.23  E-value=0.051  Score=45.35  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc-hHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD-GFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~-~-~~~~  131 (197)
                      .++.+||++|+|. |..+..+++..+..++++++.+++..+.+++....       ..+.....+ ..+.+.. . ...+
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~  255 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP  255 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence            4557999999987 77777788776644699999999999998875321       112222221 2222222 2 2369


Q ss_pred             eEEEECCCCCCC-----C------CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVG-----P------AESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~-----~------~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+........     .      .+.-.+...++.+.+.|+++|.++...
T Consensus       256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            998875321100     0      000001457788999999999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.20  E-value=0.012  Score=45.39  Aligned_cols=84  Identities=13%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh---cCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE---HQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~---~~~~~  131 (197)
                      ...++||||.|.-.+=-.+.- .++ -+.++.|+|+..++.|+..+... ..+. ..+++.. -|-...++.   ..+.|
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N-~~l~-~~I~lr~qk~~~~if~giig~nE~y  154 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISAN-PGLE-RAIRLRRQKDSDAIFNGIIGKNERY  154 (292)
T ss_pred             CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcC-cchh-hheeEEeccCcccccccccccccee
Confidence            445899999887554333332 233 68999999999999999887642 1111 1234332 221111221   25789


Q ss_pred             eEEEECCCCCCC
Q psy4592         132 DVIITDSSDPVG  143 (197)
Q Consensus       132 D~I~~~~~~~~~  143 (197)
                      |+.++|||+|.+
T Consensus       155 d~tlCNPPFh~s  166 (292)
T COG3129         155 DATLCNPPFHDS  166 (292)
T ss_pred             eeEecCCCcchh
Confidence            999999998775

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.19  E-value=0.011  Score=50.36  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEE-cCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      -+.|+|..+|.|+++.+|.+. +..-..+|- ..++.+.....+ ..     -+  +   --|..+.++..+.+||+|.+
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydR-GL-----IG--~---yhDWCE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDR-GL-----IG--V---YHDWCEAFSTYPRTYDLLHA  433 (506)
T ss_pred             eeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhc-cc-----ch--h---ccchhhccCCCCcchhheeh
Confidence            468999999999999998764 322222222 223444433332 00     11  1   11333434444679999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +..+....+. -.-...+-++-|+|+|+|.+++.
T Consensus       434 ~~lfs~~~~r-C~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  434 DGLFSLYKDR-CEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             hhhhhhhccc-ccHHHHHHHhHhhcCCCceEEEe
Confidence            8765443322 11266888999999999999984

; GO: 0008168 methyltransferase activity

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.11  E-value=0.011  Score=47.92  Aligned_cols=117  Identities=22%  Similarity=0.298  Sum_probs=73.1

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC-ceeEEEECC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ-EFDVIITDS  138 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~D~I~~~~  138 (197)
                      +++|+.||.|++...+.+.+ ...+.++|+++...+..+.|++           ....+|+.+.-...-. .+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence            78999999999998888775 4688999999999999998862           6777888765433212 599999998


Q ss_pred             CCCC-C----------CCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592         139 SDPV-G----------PAESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS  190 (197)
Q Consensus       139 ~~~~-~----------~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~  190 (197)
                      |... +          +...|+ .++++ +.+.++|.-+++=|+.....  ....++.+.+.|.+
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~-~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~  132 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLF-FEFLR-IVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEE  132 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHH-HHHHH-HHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHH
T ss_pred             CCceEeccccccccccccchhh-HHHHH-HHhhccceEEEecccceeeccccccccccccccccc
Confidence            7532 2          111122 23443 44567898777766533221  12446666666654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.10  E-value=0.014  Score=46.84  Aligned_cols=57  Identities=16%  Similarity=0.047  Sum_probs=44.0

Q ss_pred             HHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      +++..+..+.-.++..|||--+|+|..+.++.+..  -+..|+|++++.++.|++++..
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            44444433333567899999999998887766664  5899999999999999998753

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.04  E-value=0.0098  Score=45.40  Aligned_cols=42  Identities=26%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      .++..|||.-||+|..+.++.+..  -+..++|++++..+.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            567899999999999888877765  479999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.94  E-value=0.11  Score=45.19  Aligned_cols=111  Identities=23%  Similarity=0.289  Sum_probs=65.4

Q ss_pred             CCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC--------eEEEEcchHH----
Q psy4592          56 PNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR--------LTVHVGDGFR----  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~d~~~----  122 (197)
                      ..+.+|+.+|+|.=+ .+...++..+ ..|+++|.+++.++.+++.-.... ..+...        .+-...+..+    
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v-~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFL-ELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEE-EeccccccccccchhhhcchhHHHHHHH
Confidence            357899999999654 4455666666 589999999999999887311100 000000        0000011111    


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      .+......+|+||.....+..+.+.    -+.+++.+.+||||+++....
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~----lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPK----LITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcc----hHHHHHHHhcCCCCEEEEEcc
Confidence            1111124699999876544433332    124889999999999887764

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.85  E-value=0.042  Score=45.01  Aligned_cols=72  Identities=24%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC-C-ceeEEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ-Q-EFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~~D~I~~  136 (197)
                      .+++|+.||.|++...+...+ ...+.++|++|..++.-+.+++.         ..++..|+.+...... . .+|+|+.
T Consensus         4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvlig   73 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLIG   73 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEEe
Confidence            589999999999998777665 46889999999999999998752         4566677766544321 2 7899999


Q ss_pred             CCCC
Q psy4592         137 DSSD  140 (197)
Q Consensus       137 ~~~~  140 (197)
                      .+|+
T Consensus        74 GpPC   77 (328)
T COG0270          74 GPPC   77 (328)
T ss_pred             CCCC
Confidence            9885

>PRK10458 DNA cytosine methylase; Provisional

Probab=95.79  E-value=0.058  Score=46.28  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------------  125 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------  125 (197)
                      .-+++|+.||.|++...+...+ ...+.++|+++...+.-+.|+..      .+....+.+|+.+...            
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA  160 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence            4599999999999998887664 46788999999999988888742      1233444556554321            


Q ss_pred             ----hcCCceeEEEECCCC
Q psy4592         126 ----EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ----~~~~~~D~I~~~~~~  140 (197)
                          ......|+++..+|+
T Consensus       161 ~~~~~~~p~~DvL~gGpPC  179 (467)
T PRK10458        161 EHIRQHIPDHDVLLAGFPC  179 (467)
T ss_pred             hhhhccCCCCCEEEEcCCC
Confidence                112368999998875

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.78  E-value=0.14  Score=42.76  Aligned_cols=101  Identities=20%  Similarity=0.374  Sum_probs=57.5

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+|+.+|+|. |..+...++..+ .+++++|.+++-.+.+...+..        .+.....+..+ +...-..+|+|+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~-l~~~l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYE-IEDAVKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHH-HHHHHccCCEEE
Confidence            456899999983 344444455555 5899999998876666554321        12222222222 222235689999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .....+....+.+.+.+.+    +.++|+++++-.+
T Consensus       236 ~a~~~~g~~~p~lit~~~l----~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLV----AQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHH----hcCCCCCEEEEEe
Confidence            8654333323334444444    5578888777543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.65  E-value=0.037  Score=40.38  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCe-EEEEcchHHHHhhcCCceeEEEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL-TVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +++++.+|+..= +...++-..+..++..||.++--++  .. +       . +++ ++...|...-+....++||++.+
T Consensus         2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~--~~-~-------~-dr~ssi~p~df~~~~~~y~~~fD~~as   69 (177)
T PF03269_consen    2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQ--EE-F-------R-DRLSSILPVDFAKNWQKYAGSFDFAAS   69 (177)
T ss_pred             CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccC--cc-c-------c-cccccccHHHHHHHHHHhhccchhhhe
Confidence            468899998753 3344444445578999998752111  00 0       1 122 22233443334444678999887


Q ss_pred             CCCC-CCC------CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSD-PVG------PAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~-~~~------~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -... |.+      |-...=..+.+.++.++|||||.+++.+
T Consensus        70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            5543 322      1111113567889999999999999875

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.64  E-value=0.034  Score=38.64  Aligned_cols=90  Identities=18%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-C-CceeEEEECCCCCCCC
Q psy4592          67 GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-Q-QEFDVIITDSSDPVGP  144 (197)
Q Consensus        67 G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~D~I~~~~~~~~~~  144 (197)
                      |.|.++..+++..+ .++++++.++.-.+.+++.-..       .-+.....|..+.+... . ..+|+|+-...     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc-------ccccccccccccccccccccccceEEEEecC-----
Confidence            45778888888766 8999999999999999885211       11122222344444432 2 47999986552     


Q ss_pred             CcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         145 AESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       145 ~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                           ....++.+.++|+++|.+++.....
T Consensus        68 -----~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 -----SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -----cHHHHHHHHHHhccCCEEEEEEccC
Confidence                 1568899999999999999986543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=95.35  E-value=0.46  Score=36.37  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCch----HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDG----GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G----~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      .+++..++.-  -+.+.+++..++.|    .++++.+.+....+++.|-.+++-....++.+...  + ..+.++|+.++
T Consensus        30 aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~-~~~~vEfvvg~  104 (218)
T PF07279_consen   30 AEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--G-LSDVVEFVVGE  104 (218)
T ss_pred             HHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--c-ccccceEEecC
Confidence            4555555432  35578888876544    23344333333367788888877665566655421  1 12356999998


Q ss_pred             hH-HHHhhcCCceeEEEECCC
Q psy4592         120 GF-RFMSEHQQEFDVIITDSS  139 (197)
Q Consensus       120 ~~-~~~~~~~~~~D~I~~~~~  139 (197)
                      .. +.++. -...|+++.|.-
T Consensus       105 ~~e~~~~~-~~~iDF~vVDc~  124 (218)
T PF07279_consen  105 APEEVMPG-LKGIDFVVVDCK  124 (218)
T ss_pred             CHHHHHhh-ccCCCEEEEeCC
Confidence            54 44544 467999999983

The function of this family is unknown.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.34  E-value=0.2  Score=43.45  Aligned_cols=108  Identities=22%  Similarity=0.301  Sum_probs=61.8

Q ss_pred             CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC-------CC-eEEEEcchH----HH
Q psy4592          57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD-------PR-LTVHVGDGF----RF  123 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~-------~~-~~~~~~d~~----~~  123 (197)
                      ++.+|+.+|+|.=+.. ..+++..+ ..++++|.+++..+.++.. ..-.-..+.       .. .+....+..    +.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            4679999999865443 44555544 5799999999988888762 210000000       00 001111111    11


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +......+|+|+.....+..+.+.+.+    +++.+.+|||++++=.
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit----~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLIT----EEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeeh----HHHHhhCCCCCEEEEe
Confidence            222245799998877555555555554    5556788898887744

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2078|consensus

Probab=95.32  E-value=0.065  Score=44.92  Aligned_cols=66  Identities=17%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      +.+..|.|+.||-|-++.-+++.+  +.+++-|.+|++++..+.+++..  -.+..+++++..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lN--kv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLN--KVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhcccc--ccchhheeeecccHHHHhh
Confidence            556789999999998887777665  99999999999999999998752  2344459999999999985

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.31  E-value=0.17  Score=41.62  Aligned_cols=95  Identities=20%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEc---CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEI---DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+ .++++++.   +++-.+.+++. ..       ..+.....+..+ .. ....+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~-Ga-------~~v~~~~~~~~~-~~-~~~~~  239 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEEL-GA-------TYVNSSKTPVAE-VK-LVGEF  239 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHc-CC-------EEecCCccchhh-hh-hcCCC
Confidence            3567999999863 345555666655 47888886   67777777653 21       111111112111 11 13468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-..-     .     ...+..+.+.|+++|.+++..
T Consensus       240 d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         240 DLIIEATG-----V-----PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             CEEEECcC-----C-----HHHHHHHHHHccCCcEEEEEe
Confidence            98885441     1     346788899999999988764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.25  E-value=0.21  Score=41.42  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      ..+.+||..|+|. |.++..+++..+...+++++.+++-.+.+++. ..      ..-+.....|..+.+.. ..+.+|+
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~i~~~~~~g~d~  262 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA------TATVNAGDPNAVEQVRELTGGGVDY  262 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC------ceEeCCCchhHHHHHHHHhCCCCCE
Confidence            4567999998753 33445566665534699999999998888763 21      11111111232222222 2336899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-...     .     ...++.+.+.|+++|.++...
T Consensus       263 vid~~G-----~-----~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         263 AFEMAG-----S-----VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             EEECCC-----C-----hHHHHHHHHHHhcCCEEEEEc
Confidence            985431     1     346678889999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK13699 putative methylase; Provisional

Probab=95.22  E-value=0.052  Score=42.10  Aligned_cols=45  Identities=16%  Similarity=0.091  Sum_probs=38.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP  102 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~  102 (197)
                      .++..|||--||+|..+.+..+..  .+..++|++++..+.+.+++.
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence            466799999999999888776664  588899999999999988764

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=95.19  E-value=0.048  Score=48.48  Aligned_cols=68  Identities=12%  Similarity=0.044  Sum_probs=43.4

Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      .-++|+|++|+-.....-........-+.+.++|.++|.+++-+.-...- ..-..++..+.+.|+.|.
T Consensus       413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F~~V~  480 (675)
T PF14314_consen  413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYFKSVE  480 (675)
T ss_pred             CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhcCceE
Confidence            34899999998543322211122344556678999999999976432221 223367788888898875

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.15  E-value=0.25  Score=40.65  Aligned_cols=99  Identities=17%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D  132 (197)
                      .++.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. ..      ..-+.....|..+.+.. . ...+|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d  247 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD  247 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence            4567999998753 33445566665534599999999988888653 21      11112222233332322 2 23589


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-..-     .     ...++.+.+.++++|++++..
T Consensus       248 ~vid~~g-----~-----~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       248 VVIDAVG-----R-----PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             EEEECCC-----C-----HHHHHHHHHHhccCCEEEEEC
Confidence            8884331     1     345677888999999998764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.08  E-value=0.33  Score=39.35  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=68.7

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+|..||.|. |..+.-++.-.+ ..|+.+|.|.+-++.....+.        .+++........+ ...-.++|++|
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~i-ee~v~~aDlvI  236 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNI-EEAVKKADLVI  236 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHH-HHHhhhccEEE
Confidence            356888999885 334444554444 799999999988877766553        3677777776553 33356799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ...-.+....+.|.    .+++.+.||||++++=.
T Consensus       237 gaVLIpgakaPkLv----t~e~vk~MkpGsVivDV  267 (371)
T COG0686         237 GAVLIPGAKAPKLV----TREMVKQMKPGSVIVDV  267 (371)
T ss_pred             EEEEecCCCCceeh----hHHHHHhcCCCcEEEEE
Confidence            87655555555554    46667789999988754

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.07  E-value=0.39  Score=37.79  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CCCCeEEEEeCCchHhHHHH---hcCC--CCccEEEEEcCH--------------------------HHHHHHHhhcCCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREV---LKHP--SVESAYLVEIDN--------------------------RVIEVSKKYLPGM  104 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l---~~~~--~~~~v~~ve~~~--------------------------~~~~~a~~~~~~~  104 (197)
                      .-+..|+++|+-.|+.+..+   ++..  ...++.+.|.-+                          ...+..++++...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            34579999999999766443   2221  234677777211                          1344556666542


Q ss_pred             CCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         105 AVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       105 ~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                        ++..+++.++.|...+.++. +.+++-++..|.-..      -.+...|+.++..|.|||++++-
T Consensus       153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~D  211 (248)
T PF05711_consen  153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFD  211 (248)
T ss_dssp             --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEES
T ss_pred             --CCCcccEEEECCcchhhhccCCCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEe
Confidence              23346899999999887765 345677777666211      11367899999999999999983

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.95  E-value=0.4  Score=39.41  Aligned_cols=98  Identities=9%  Similarity=0.072  Sum_probs=61.9

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~-~~~~~  131 (197)
                      .++.+||..|+  |.|.++..+++..+ .++++++.+++-.+.+++.+..      ..-+..... +..+.+.. ..+.+
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv  229 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI  229 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence            45679999997  35667777777765 5788889888888877643321      111221111 33333322 23468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-..-           ...+..+.+.|+++|.+++..
T Consensus       230 D~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        230 DIYFDNVG-----------GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EEEEECCC-----------HHHHHHHHHHhccCCEEEEEC
Confidence            99984331           235678889999999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.95  E-value=0.1  Score=37.91  Aligned_cols=100  Identities=20%  Similarity=0.241  Sum_probs=61.1

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCC-CCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGL-SDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~-~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +|..||+|.++.+.+........+|+....+++.++..++.-....  .+. -.+++. ...|..+.+.    ..|+|+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~~----~ad~Iii   75 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEALE----DADIIII   75 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHHT----T-SEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHhC----cccEEEe
Confidence            4778999998877664432223799999999988887766432110  000 113454 3567666553    4799998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..|...       -+++++++...++++-.++...
T Consensus        76 avPs~~-------~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   76 AVPSQA-------HREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             -S-GGG-------HHHHHHHHTTTSHTT-EEEETS
T ss_pred             cccHHH-------HHHHHHHHhhccCCCCEEEEec
Confidence            775211       1678899999997776666643

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1227|consensus

Probab=94.92  E-value=0.017  Score=46.19  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             CCCeEEEEeCCchHhHH-HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAR-EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+..|.|+-+|-|+++. .+.+. +...++++|.+|-.++..+++....  . ...+..++.+|-+.  .......|-|.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N--~-V~~r~~i~~gd~R~--~~~~~~AdrVn  267 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEAN--N-VMDRCRITEGDNRN--PKPRLRADRVN  267 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhc--c-hHHHHHhhhccccc--cCccccchhee
Confidence            34789999999999998 45555 4579999999999999999987642  1 11234444555322  12245677777


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGI  166 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~  166 (197)
                      ...-    |..    ++-...+.++|||.|-
T Consensus       268 LGLl----PSs----e~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  268 LGLL----PSS----EQGWPTAIKALKPEGG  290 (351)
T ss_pred             eccc----ccc----ccchHHHHHHhhhcCC
Confidence            6542    221    3344567788888876

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.27  Score=38.60  Aligned_cols=109  Identities=16%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .+...+|+|+|+..-++.+...    ....+.+-||++..+++...+.+..   .+..-.+.-+++|....+...+..--
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~---~y~~l~v~~l~~~~~~~La~~~~~~~  154 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR---EYPGLEVNALCGDYELALAELPRGGR  154 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH---hCCCCeEeehhhhHHHHHhcccCCCe
Confidence            3679999999998766665543    3336889999999988744333221   01122355577887765554322112


Q ss_pred             EEEE--CCCCCC-CCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIIT--DSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~--~~~~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -+++  ...... .|.+   ...|+.++...|+||-++++-+
T Consensus       155 Rl~~flGStlGN~tp~e---~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         155 RLFVFLGSTLGNLTPGE---CAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EEEEEecccccCCChHH---HHHHHHHHHhcCCCcceEEEec
Confidence            2222  222111 1222   2569999999999999999854

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.82  E-value=0.23  Score=40.06  Aligned_cols=87  Identities=22%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+||.+|+| .|.++..+++..+...+.++|.+++.++.+++.. .         +     |..+.   ....+|+|+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-~---------i-----~~~~~---~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-V---------L-----DPEKD---PRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-c---------c-----Chhhc---cCCCCCEEE
Confidence            45689999875 3445555666666445778888887766665421 0         0     10000   124689888


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -..-     .     ...++.+.+.|+++|++++..
T Consensus       206 d~~G-----~-----~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DASG-----D-----PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ECCC-----C-----HHHHHHHHHhhhcCcEEEEEe
Confidence            5431     1     346788899999999999764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.82  E-value=0.23  Score=37.23  Aligned_cols=124  Identities=22%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CC--------CCCCeEEEEcchHHHHhhcCC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GL--------SDPRLTVHVGDGFRFMSEHQQ  129 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~--------~~~~~~~~~~d~~~~~~~~~~  129 (197)
                      ++|-.+|.|-=++..++.....+.+|+++|++++.++...+-.....+ ++        ...++.+ ..|..+.+.    
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~----   75 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIK----   75 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHH----
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhh----
Confidence            367788888555444433222237999999999998887764322110 00        0112322 244444333    


Q ss_pred             ceeEEEECCCCCCCCCcc--c-ccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHHHHHH
Q psy4592         130 EFDVIITDSSDPVGPAES--L-FQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQH  187 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~--l-~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~  187 (197)
                      ..|+++...+.+...+..  + +-.+.++.+.+.|+++-.+++.+.-+.- ..+.+..+++.
T Consensus        76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            379898877655432211  1 1156788889999998888887643322 22244444443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.71  E-value=0.00099  Score=45.26  Aligned_cols=40  Identities=33%  Similarity=0.499  Sum_probs=27.4

Q ss_pred             ceeEEEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +||+|++-....|.    .+..+  ..+|+.+++.|+|||.|++..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl--~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGL--KRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHH--HHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHH--HHHHHHHHHhhCCCCEEEEeC
Confidence            48999875543332    12222  569999999999999999974

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.68  E-value=0.41  Score=38.59  Aligned_cols=98  Identities=22%  Similarity=0.255  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~  133 (197)
                      ..+.+||..|+| .|..+..+++..+ .++++++.+++..+.+++. ..     . .-+.....+..+.+. .....+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA-----D-EVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC-----C-EEEcCCCcCHHHHHHHhcCCCceE
Confidence            445689998765 3666677777655 6799999999988888653 11     0 011111112222221 12457998


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....          ....++++.+.|+++|.++...
T Consensus       236 vid~~g----------~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVG----------TQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCC----------CHHHHHHHHHHhhcCCEEEEEC
Confidence            875431          0346788899999999998764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.64  E-value=0.4  Score=39.26  Aligned_cols=93  Identities=13%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CCCCeEEEEeCCchH-hHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGG-VAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~-~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +.+.+||.+|+|.=+ ++..+++. .+..+++++|.+++-++.+++ +..        .  ....+    +.. ...+|+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~--------~--~~~~~----~~~-~~g~d~  225 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE--------T--YLIDD----IPE-DLAVDH  225 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc--------e--eehhh----hhh-ccCCcE
Confidence            456799999986433 33344543 344689999999988888865 221        1  11111    111 124898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-..-    ..   .....++.+.+.|+++|++++..
T Consensus       226 viD~~G----~~---~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         226 AFECVG----GR---GSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             EEECCC----CC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence            884331    10   01456788899999999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.64  E-value=0.075  Score=39.12  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--------cch-------
Q psy4592          57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--------GDG-------  120 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~d~-------  120 (197)
                      +|.+|+.+|.|.=+.+ ..+++..+ .+++.+|..++..+..+.....        .+.+..        -|-       
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAY--------FIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE--------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCc--------eEEEcccccccccccchhhhhHHH
Confidence            5679999999864443 44555555 7999999999887776654321        122200        011       


Q ss_pred             ---HHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         121 ---FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       121 ---~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                         ...+...-..+|+|+.+...+....+.+.+.+-+    +.|+|+-+++=.+
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~----~~m~~gsvIvDis  139 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMV----KSMKPGSVIVDIS  139 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHH----HTSSTTEEEEETT
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHh----hccCCCceEEEEE
Confidence               1111112346899998776555566677775554    4567777666443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.60  E-value=1.1  Score=35.52  Aligned_cols=96  Identities=16%  Similarity=0.111  Sum_probs=57.4

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCceeE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D~  133 (197)
                      ++.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++.-.      + .-+..  .+..+.+. . ....+|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~~--~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------T-ALAEP--EVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------c-EecCc--hhhHHHHHHHhCCCCCCE
Confidence            557999998753 2344445565553458889999988888877421      0 00111  11111111 1 1246899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-..-     .     ...++.+.+.|+++|.++...
T Consensus       191 vid~~G-----~-----~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       191 ALEFSG-----A-----TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             EEECCC-----C-----hHHHHHHHHHhcCCCEEEEec
Confidence            884331     1     346788899999999998765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.60  E-value=0.53  Score=36.40  Aligned_cols=99  Identities=20%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~  133 (197)
                      .++.+||..|+|+ |.....+++..+ .++++++.+++..+.+++....       .-+.....+....+ ....+.+|+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence            4567999999985 556666666655 7899999998887777653210       01111111211111 112457999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++.....          ...+..+.+.|+++|.++....
T Consensus       205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         205 VIDAVGG----------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EEECCCC----------HHHHHHHHHhcccCCEEEEEcc
Confidence            9865421          1356778889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.47  E-value=0.7  Score=37.53  Aligned_cols=99  Identities=22%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~  133 (197)
                      ..+.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++. ..      ..-+.....+........ ...+|+
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~d~  234 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GA------DFVINSGQDDVQEIRELTSGAGADV  234 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEcCCcchHHHHHHHhCCCCCCE
Confidence            4567999998742 22334455555533399999999888888653 21      011111112222222222 246999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-...     .     ...+..+.+.|+++|.+++..
T Consensus       235 vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         235 AIECSG-----N-----TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            985432     1     345577788999999998764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.44  E-value=0.46  Score=38.64  Aligned_cols=96  Identities=9%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             CeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          59 KKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      .+||..|+  |.|..+..+++..+..++++++-+++-.+.+++.+..      ..-+.....+..+.+.. ....+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence            79999986  4566666677765533799999888887777664431      11111112233333322 235699998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....           ...+..+.+.|+++|.++...
T Consensus       230 d~~g-----------~~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         230 DNVG-----------GEISDTVISQMNENSHIILCG  254 (345)
T ss_pred             ECCC-----------cHHHHHHHHHhccCCEEEEEe
Confidence            4331           113477888999999988753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.23  E-value=0.29  Score=42.57  Aligned_cols=112  Identities=14%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC----CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP----SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      ...+.|..||+|++.....+..    ....+++-|..+++...++.+....  +...+......+|-...... ...+||
T Consensus       218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~--~~~~~t~~~~~~dtl~~~d~~~~~~~D  295 (501)
T TIGR00497       218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH--NIDYANFNIINADTLTTKEWENENGFE  295 (501)
T ss_pred             CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc--CCCccccCcccCCcCCCccccccccCC
Confidence            3689999999999876543311    2257899999999999998874210  11112233333342211111 135699


Q ss_pred             EEEECCCCCC--C----CC----cc------c-----ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPV--G----PA----ES------L-----FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~--~----~~----~~------l-----~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .|++|||...  .    ++    ..      +     ..-.++..+...|++||...+..
T Consensus       296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            9999997522  1    00    00      0     11357888899999999755543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=94.13  E-value=0.77  Score=36.04  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeEEEECC
Q psy4592          62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDVIITDS  138 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~I~~~~  138 (197)
                      |..-.|+=.++..+++..  .+.+.+|+-|+-.+..++++..      ..+++++..|+.+.+...   ..+==+|++||
T Consensus        62 l~~YPGSP~ia~~llR~q--Drl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQ--DRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-TT--SEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCcc--ceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence            667777777777766543  6999999999999999888763      468999999999876652   33445899999


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +.....+..- -.+.+.++.+.. +.|+++++-  |.......+.+.+.+++.
T Consensus       134 pYE~~~dy~~-v~~~l~~a~kR~-~~G~~~iWY--Pi~~~~~~~~~~~~l~~~  182 (245)
T PF04378_consen  134 PYEQKDDYQR-VVDALAKALKRW-PTGVYAIWY--PIKDRERVDRFLRALKAL  182 (245)
T ss_dssp             ---STTHHHH-HHHHHHHHHHH--TTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHH-HHHHHHHHHHhc-CCcEEEEEe--ecccHHHHHHHHHHHHhc
Confidence            7644433211 134555555553 566666542  445566667777777654

; PDB: 2OO3_A.

>KOG2912|consensus

Probab=94.01  E-value=0.31  Score=39.55  Aligned_cols=77  Identities=10%  Similarity=0.057  Sum_probs=49.6

Q ss_pred             EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh----c-CCceeEE
Q psy4592          61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE----H-QQEFDVI  134 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~----~-~~~~D~I  134 (197)
                      -+|||+|.-.+--.+.....+-...++|++...++.|+.+.++.  + ....+++++...... +..    . ...||++
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn--~-lss~ikvV~~~~~ktll~d~~~~~~e~~ydFc  182 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN--N-LSSLIKVVKVEPQKTLLMDALKEESEIIYDFC  182 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc--c-cccceeeEEecchhhcchhhhccCccceeeEE
Confidence            57888877554333333333367889999999999999998763  2 234566665543221 111    1 3359999


Q ss_pred             EECCCC
Q psy4592         135 ITDSSD  140 (197)
Q Consensus       135 ~~~~~~  140 (197)
                      .+|||+
T Consensus       183 McNPPF  188 (419)
T KOG2912|consen  183 MCNPPF  188 (419)
T ss_pred             ecCCch
Confidence            999985

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=0.074  Score=41.76  Aligned_cols=112  Identities=16%  Similarity=0.097  Sum_probs=76.6

Q ss_pred             CeEEEEeCCchHhHHHHhcCC------------CCccEEEEEcCHHHHH-------------HHHhhcCCCCCC------
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP------------SVESAYLVEIDNRVIE-------------VSKKYLPGMAVG------  107 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~------------~~~~v~~ve~~~~~~~-------------~a~~~~~~~~~~------  107 (197)
                      -.|+++|.|+|.....+.+..            ....++.+|.+|....             .+.+..+.+...      
T Consensus        60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r  139 (252)
T COG4121          60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA  139 (252)
T ss_pred             eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence            479999999998766655431            2346788887653221             111111111000      


Q ss_pred             --C-CCCCeEEEEcchHHHHhhcCC---ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         108 --L-SDPRLTVHVGDGFRFMSEHQQ---EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       108 --~-~~~~~~~~~~d~~~~~~~~~~---~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        + ....+.+..+|+.+.++....   ++|+.+.|.+.+...+ ..++++++..+++..+|||.+...+
T Consensus       140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s  208 (252)
T COG4121         140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATFA  208 (252)
T ss_pred             hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence              0 123577889999887776544   7999999999877655 7789999999999999999999753

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.93  E-value=0.052  Score=36.81  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=24.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHH
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNR   92 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~   92 (197)
                      ++....|||||+|-+...|.+.+  -.-.|+|....
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R~R   91 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEG--YPGWGIDARRR   91 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCC--CCccccccccc
Confidence            45689999999998877666653  46668887543

; GO: 0008168 methyltransferase activity

>KOG0821|consensus

Probab=93.87  E-value=0.069  Score=41.09  Aligned_cols=59  Identities=31%  Similarity=0.461  Sum_probs=44.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ..-|.+||.|.|++++.+.... ..+...||+|+..+.-.+.....     .+.+..++.+|+..
T Consensus        51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLR  109 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhc-----CCcceEEeccccce
Confidence            3579999999999999998774 47999999999888766543322     23467777787653

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.82  E-value=0.86  Score=36.64  Aligned_cols=96  Identities=11%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      .++.+||..|.  |.|..+..+++..+ .+++++..+++-.+.+++ +..      ..-+.....|..+.+.. ....+|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~-~Ga------~~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKE-LGF------DAVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH-cCC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence            45679999984  45556666777655 578888988888888876 321      11122222233332222 234699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+....           ...++.+.+.|+++|.++..
T Consensus       214 ~vld~~g-----------~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         214 CYFDNVG-----------GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             EEEECCC-----------HHHHHHHHHhhccCCEEEEE
Confidence            8884321           23568889999999998865

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.72  E-value=0.83  Score=37.30  Aligned_cols=100  Identities=18%  Similarity=0.248  Sum_probs=57.0

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      ..+.+||..|+|. |..+..+++..+...+++++.+++-.+.+++. ..      ..-+.....+..+.... ....+|.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~~~d~  231 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA------MQTFNSREMSAPQIQSVLRELRFDQ  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------ceEecCcccCHHHHHHHhcCCCCCe
Confidence            4567999998753 22334455555533478899999888887653 21      00111111222222222 1246784


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.|..   + .     ...+..+.+.|+++|.+++..
T Consensus       232 ~v~d~~---G-~-----~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        232 LILETA---G-V-----PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             EEEECC---C-C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            444442   1 1     346788889999999998864

>KOG2920|consensus

Probab=93.68  E-value=0.06  Score=42.77  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh-hcCCC-CCC-C---CCCCeEEEEcchHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK-YLPGM-AVG-L---SDPRLTVHVGDGFRFMSEHQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~-~~~~~-~~~-~---~~~~~~~~~~d~~~~~~~~~~  129 (197)
                      -..++|||+|||.|--...+..... ..+...|.+.+.++...- ++..+ ..+ .   ...-..+...+..++.....+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~  193 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE  193 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence            4678999999999977766655532 688888988888742221 11000 000 0   011122223311111111123


Q ss_pred             --ceeEEEECCCCCCCCCcccccHHH-HHHHHhhcCCCcEEEEEc
Q psy4592         130 --EFDVIITDSSDPVGPAESLFQASY-FELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 --~~D~I~~~~~~~~~~~~~l~~~~~-~~~~~~~LkpgG~l~~~~  171 (197)
                        .||+|.+.-+.......    +.+ ...-...++++|.+++..
T Consensus       194 ~~~ydlIlsSetiy~~~~~----~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  194 RTHYDLILSSETIYSIDSL----AVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             ccchhhhhhhhhhhCcchh----hhhHhhhhhhcCCccchhhhhh
Confidence              78888876543332221    222 445567889999887654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.66  E-value=0.91  Score=37.18  Aligned_cols=98  Identities=21%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+.+||..|..  -|.++..+++..+. ++.++--+++-.+.+++.-.       ..-+.+...|..+.+.. . ...+
T Consensus       141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv  212 (326)
T COG0604         141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV  212 (326)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence            446899999964  45677788887764 55555555655556666432       12344555555555543 2 2369


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+|+...           ....+....+.|+++|.++....
T Consensus       213 Dvv~D~v-----------G~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         213 DVVLDTV-----------GGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             eEEEECC-----------CHHHHHHHHHHhccCCEEEEEec
Confidence            9998443           25677888999999999998764

>KOG4058|consensus

Probab=93.62  E-value=0.11  Score=37.39  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             hcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          50 LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        50 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      +.++...+..+.+|+|+|.|.+..+.++.+ ....+++|++|-.+.+++-.
T Consensus        65 LSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~  114 (199)
T KOG4058|consen   65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLH  114 (199)
T ss_pred             HHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHH
Confidence            333333333689999999999988877764 35788999999888877653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.51  E-value=1.4  Score=35.50  Aligned_cols=97  Identities=10%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~  131 (197)
                      .++.+||..|.  |.|..+..+++..+ .++++++-+++-.+.+++ +..      ..-+.... .+..+.+.. ..+.+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~-lGa------~~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKK-LGF------DVAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH-cCC------CEEEeccccccHHHHHHHhCCCCe
Confidence            45679999984  46666677777655 578888888888888865 221      11111111 122222222 23469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-...           ...+..+.+.|+++|.++...
T Consensus       209 dvv~d~~G-----------~~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       209 DCYFDNVG-----------GEFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EEEEECCC-----------HHHHHHHHHHhCcCcEEEEec
Confidence            99984321           234578889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.47  E-value=0.096  Score=41.18  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=34.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC--------CCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP--------SVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~--------~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      +-+|+|+|+|+|.++..++...        ...+++.||++|.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4799999999999998877531        235899999999998888777654

; PDB: 4F3N_A 1ZKD_B.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.47  E-value=1.1  Score=36.54  Aligned_cols=98  Identities=19%  Similarity=0.235  Sum_probs=58.8

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D  132 (197)
                      +++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. ..      ..-+.....+..+.+. . ....+|
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d  237 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGVD  237 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCCc
Confidence            456799999865 233445566665544689999998888888763 21      1111111122222222 1 234699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+....     .     ...+..+.+.|+++|.++..
T Consensus       238 ~vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         238 AVIIAGG-----G-----QDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             EEEECCC-----C-----HHHHHHHHHHhhcCCEEEEe
Confidence            8885331     1     34678889999999998864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.43  E-value=0.63  Score=36.00  Aligned_cols=82  Identities=21%  Similarity=0.335  Sum_probs=48.4

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhhcCCCCCCCCCCCeEEE
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKYLPGMAVGLSDPRLTVH  116 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~~~~~~~~~~~~~~~~~  116 (197)
                      ..|.+-..+++....-++++||.+|+|.=+.-..  +++..  +.|+.|  ++++++.++++.           .+++++
T Consensus         8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~-----------~~i~~~   74 (223)
T PRK05562          8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKY-----------GNLKLI   74 (223)
T ss_pred             HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence            3343335556655556778999999998765533  33443  455555  778887665532           356666


Q ss_pred             EcchHHHHhhcCCceeEEEECC
Q psy4592         117 VGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus       117 ~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      ..+.....   -..+++|++..
T Consensus        75 ~r~~~~~d---l~g~~LViaAT   93 (223)
T PRK05562         75 KGNYDKEF---IKDKHLIVIAT   93 (223)
T ss_pred             eCCCChHH---hCCCcEEEECC
Confidence            65543211   23467777654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.27  E-value=2.5  Score=31.26  Aligned_cols=91  Identities=15%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|..+|+|.  ++..++   +..+ .+|.++|.++.....+...           .+  ...+..+.+..    .|+
T Consensus        35 ~g~tvgIiG~G~--IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~~----aDi   94 (178)
T PF02826_consen   35 RGKTVGIIGYGR--IGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLAQ----ADI   94 (178)
T ss_dssp             TTSEEEEESTSH--HHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHHH-----SE
T ss_pred             CCCEEEEEEEcC--CcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcch----hhh
Confidence            567999999875  444433   3444 6999999988765522221           12  23466666654    799


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |+...|.... ..++++.+    ..+.||+|.+|+ |+..
T Consensus        95 v~~~~plt~~-T~~li~~~----~l~~mk~ga~lv-N~aR  128 (178)
T PF02826_consen   95 VSLHLPLTPE-TRGLINAE----FLAKMKPGAVLV-NVAR  128 (178)
T ss_dssp             EEE-SSSSTT-TTTSBSHH----HHHTSTTTEEEE-ESSS
T ss_pred             hhhhhccccc-cceeeeee----eeeccccceEEE-eccc
Confidence            9998875332 22344444    445788777655 4433

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.26  E-value=2.2  Score=36.16  Aligned_cols=102  Identities=12%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             CeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-----------
Q psy4592          59 KKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-----------  125 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------  125 (197)
                      ++|..||.|.-+...+  +++.+  .+++++|.+++.++..++....           +...+..+.+.           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~~-----------~~e~~l~~~l~~~~~~g~l~~~   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEIH-----------IVEPDLDMVVKTAVEGGYLRAT   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCCC-----------cCCCCHHHHHHHHhhcCceeee
Confidence            4789999996655544  33342  6899999999988864432110           11111111111           


Q ss_pred             hcCCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         126 EHQQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ...+..|+|+...+.+...+  ..+ .-....+.+.+.|++|..++..+..
T Consensus        71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv  121 (415)
T PRK11064         71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS  121 (415)
T ss_pred             cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            00125799998877653221  111 1144567788889988877776543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.14  E-value=1.7  Score=35.34  Aligned_cols=98  Identities=8%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||..|+  |.|..+..+++..+ .+++++..+++-.+.+++.+..     + .-+.... .+..+.+.. ....+
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa-----~-~vi~~~~~~~~~~~i~~~~~~gv  222 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGF-----D-DAFNYKEEPDLDAALKRYFPNGI  222 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC-----c-eeEEcCCcccHHHHHHHhCCCCc
Confidence            45689999996  45566666777655 5788888888888888764331     1 1122111 133332222 23569


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+....           ...+..+.+.|+++|.++...
T Consensus       223 d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         223 DIYFDNVG-----------GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             EEEEECCC-----------HHHHHHHHHHhccCcEEEEec
Confidence            99984321           235678889999999998753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.09  E-value=1.3  Score=35.90  Aligned_cols=98  Identities=18%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+| .|..+..+++..+...+++++.++...+.+++.- .      ..-+.....+..+.+..  ..+.+|
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d  238 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVD  238 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence            345788887664 3455566666654347888888887777776531 1      11112222223232322  235699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++....    .      ...++.+.+.|+++|.++..
T Consensus       239 ~vld~~g----~------~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         239 CVIEAVG----F------EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             EEEEccC----C------HHHHHHHHHHhhcCCEEEEE
Confidence            9885321    0      24678888999999998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.01  E-value=3.2  Score=35.14  Aligned_cols=102  Identities=14%  Similarity=0.045  Sum_probs=59.1

Q ss_pred             CCCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+++|+.+|+|.=+.... .++..+ .+|+++|.+|.....++..         .  ..+  .+..+.+    ...|+|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~---------G--~~v--~~leeal----~~aDVV  254 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD---------G--FRV--MTMEEAA----KIGDIF  254 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc---------C--CEe--CCHHHHH----hcCCEE
Confidence            3567999999997544443 334444 6899999999654433321         1  122  1333333    347998


Q ss_pred             EECCCCCCCCCcccccHHHHH-HHHhhcCCCcEEEEEcCCCC-cChhHHHHHH
Q psy4592         135 ITDSSDPVGPAESLFQASYFE-LMSRALRPGGIVCSQAGTLW-YSLDCVGNTL  185 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~-~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~  185 (197)
                      +....     .     ...+. .....+|+|++++...-... .+.+.+.+..
T Consensus       255 ItaTG-----~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       255 ITATG-----N-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             EECCC-----C-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence            86431     1     33444 47789999998887653332 4445554433

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.01  E-value=2.3  Score=36.76  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             CeEEEEeCCchHhHHHHh--cCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC-------CCCeEEEEcchHHHHhhcC
Q psy4592          59 KKVLIVGGGDGGVAREVL--KHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS-------DPRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~--~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~-------~~~~~~~~~d~~~~~~~~~  128 (197)
                      .+|..+|+|-.++..++.  +.+...+|+++|++++.++..++...... .++.       ..++. ...|..+.+    
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i----   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV----   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----
Confidence            368899999877666643  33334689999999999988776432211 0100       00121 223322222    


Q ss_pred             CceeEEEECCCCCCCC-------Cccc-ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         129 QEFDVIITDSSDPVGP-------AESL-FQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~-------~~~l-~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ...|+|+...+.+...       .+.+ +-.+..+++.+.|+++-.+++.+.-|
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp  130 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP  130 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            3468888876544421       1111 11567777888898877777665443

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=92.96  E-value=0.91  Score=36.81  Aligned_cols=97  Identities=19%  Similarity=0.363  Sum_probs=57.8

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++.+||..|+|. |..+..+++..+...+++++.+++..+.+++. ..     + .-+.....+.... ......+|+++
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~-----~-~vi~~~~~~~~~~-~~~~~~vd~vl  236 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA-----D-ETVNLARDPLAAY-AADKGDFDVVF  236 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----C-EEEcCCchhhhhh-hccCCCccEEE
Confidence            567899988764 45555666665533788999888888876653 21     0 0011111111121 11224589998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....     .     ...++.+.+.|+++|.++...
T Consensus       237 d~~g-----~-----~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         237 EASG-----A-----PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             ECCC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence            5432     0     345688899999999998653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.93  E-value=1.1  Score=32.96  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=57.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +..+|+-|||=+-.....- ...+..++...|+|........+.+..    ++...       ..+....-.++||+|++
T Consensus        25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~f----yD~~~-------p~~~~~~l~~~~d~vv~   92 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVF----YDYNE-------PEELPEELKGKFDVVVI   92 (162)
T ss_pred             CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEE----CCCCC-------hhhhhhhcCCCceEEEE
Confidence            4479999999886554333 133447899999999875533221111    01100       01111112468999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |||.  ... .. ..+..+.++.++|+++.+++.+
T Consensus        93 DPPF--l~~-ec-~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   93 DPPF--LSE-EC-LTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             CCCC--CCH-HH-HHHHHHHHHHHhCccceEEEec
Confidence            9986  111 11 1334467777889988888754

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PLN02740 Alcohol dehydrogenase-like

Probab=92.77  E-value=1.5  Score=36.42  Aligned_cols=99  Identities=14%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||.+|+|. |..+..+++..+..++++++.+++-++.+++. ..      ..-+....  .+..+.+.. ..+.+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~  269 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV  269 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence            4567999998753 23334455665534699999999999988763 21      11111111  122222222 22369


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-..-     .     ...++.+.+.++++ |.+++..
T Consensus       270 dvvid~~G-----~-----~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        270 DYSFECAG-----N-----VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CEEEECCC-----C-----hHHHHHHHHhhhcCCCEEEEEc
Confidence            98885431     1     34667788889997 9887754

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.75  E-value=2.9  Score=34.15  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh-cCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEE
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKY-LPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I  134 (197)
                      ..+|..+|+|+ |.....++...+...+..+|++++..+ +... +... .........+.. .|.. .+    ...|+|
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADiV   77 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDVV   77 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCEE
Confidence            45899999988 655544444333357999999886543 2111 1110 001122344443 5533 22    336999


Q ss_pred             EECCCCCCCCC---ccc------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPA---ESL------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~---~~l------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...-.+..+.   ..+      .-.++.+.+.+. .|++.+++.++.
T Consensus        78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP  124 (319)
T PTZ00117         78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP  124 (319)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence            98663222111   000      013455566665 689977776543

>PLN02827 Alcohol dehydrogenase-like

Probab=92.59  E-value=1.4  Score=36.72  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||..|+|. |.++..+++..+...+++++.+++-.+.+++. ..     + .-+....  .+..+.+.. ..+.+
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga-----~-~~i~~~~~~~~~~~~v~~~~~~g~  264 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV-----T-DFINPNDLSEPIQQVIKRMTGGGA  264 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC-----c-EEEcccccchHHHHHHHHHhCCCC
Confidence            4567999998743 22334455555544688899888888888653 21     0 0111111  122232322 22368


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-..-     .     ...+..+.+.|+++ |.+++..
T Consensus       265 d~vid~~G-----~-----~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        265 DYSFECVG-----D-----TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CEEEECCC-----C-----hHHHHHHHHhhccCCCEEEEEC
Confidence            98884331     1     33567788899998 9998754

>KOG2539|consensus

Probab=92.59  E-value=0.75  Score=39.24  Aligned_cols=126  Identities=14%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             CCCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc---hHHHHhhc-CC
Q psy4592          56 PNPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD---GFRFMSEH-QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~-~~  129 (197)
                      ..+..+.|+|.|.|.-.  ...........++.||-+..|.....+....     .......+.-.   -+..++.. ..
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-----~~~~g~~~v~~~~~~r~~~pi~~~~  273 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-----GSHIGEPIVRKLVFHRQRLPIDIKN  273 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-----hhhcCchhccccchhcccCCCCccc
Confidence            35678888888866433  3333233346899999999999888776542     00111111111   01122222 34


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ  186 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  186 (197)
                      .||+|++....+.......-....-..+++..++|+.+++....-....+.+.+..+
T Consensus       274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~  330 (491)
T KOG2539|consen  274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQ  330 (491)
T ss_pred             ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHH
Confidence            599999987655543332212334456778899999888765333333344444443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.59  E-value=0.82  Score=36.60  Aligned_cols=103  Identities=15%  Similarity=0.227  Sum_probs=58.6

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC------CCCCC--------CCCeEEEEcchHHHH
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM------AVGLS--------DPRLTVHVGDGFRFM  124 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~--------~~~~~~~~~d~~~~~  124 (197)
                      ++|..||+|.-+.+.+.........|+.+|.+++.++.+++.....      .....        ..++++ ..|..+.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence            4789999986554433222212368999999998887776542100      00000        013332 24433322


Q ss_pred             hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         125 SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       125 ~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                          ...|+|+...+...     -...++++++...++++..++.++
T Consensus        83 ----~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~snt  120 (287)
T PRK08293         83 ----KDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNS  120 (287)
T ss_pred             ----cCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECc
Confidence                35799998775211     112567888888888887665544

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.56  E-value=0.28  Score=40.45  Aligned_cols=51  Identities=25%  Similarity=0.449  Sum_probs=39.5

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCC--------CCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHP--------SVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~--------~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      ...+.+-.+++||.|.|.++.-+++..        ...++..||+||+..+.=++.++.
T Consensus        73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            334566789999999999988777532        357999999999998777666654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.19  E-value=2.9  Score=34.25  Aligned_cols=98  Identities=19%  Similarity=0.295  Sum_probs=57.4

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc---chHHHHhhc--CC
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG---DGFRFMSEH--QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~--~~  129 (197)
                      ..+.+||.+|+|. |..+..+++..+ .++++++.+++-++.+++. ..      ..-+.....   |..+.+...  ..
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence            4567999999854 445555666655 5789999999988888663 21      111111111   222222221  12


Q ss_pred             cee----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFD----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+|    +|+ +..   + .     ...++.+.+.|++||.+++..
T Consensus       237 g~d~~~d~v~-d~~---g-~-----~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       237 GLRSTGWKIF-ECS---G-S-----KPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             CCCCCcCEEE-ECC---C-C-----hHHHHHHHHHHhcCCeEEEEC
Confidence            354    454 331   1 1     346677888999999998865

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.13  E-value=4.7  Score=32.51  Aligned_cols=108  Identities=20%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+|..+|+|. |......+...+..++..+|++++..+-....+.... ........+.. .|..+ +    ...|+|+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~~~-~----~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDYED-I----AGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCHHH-H----CCCCEEEE
Confidence            4789999987 5544443333221289999998876532111111100 00111234432 45322 2    34799998


Q ss_pred             CCCCCCCCCcc---c------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAES---L------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~---l------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ....+..+...   +      .-.++++.+.+.. |++.+++.++.
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP  121 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNP  121 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence            65433322110   0      0134555555554 77877776544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.10  E-value=1.5  Score=35.39  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+|..||+|.-+  ++..+.+......++++|.+++..+.+++. ..        ... ...+..+.+    ...|+|+.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii   72 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL   72 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence            589999998633  333344332224799999999877766542 10        111 112322222    35799998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      ..+...       ...+++.+...++++..++
T Consensus        73 avp~~~-------~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         73 CVPVGA-------SGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CCCHHH-------HHHHHHHHHhhCCCCCEEE
Confidence            775311       1445666666777776554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.93  E-value=0.46  Score=38.03  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=58.5

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-----CC-CC-------CCCeEEEEcchHHH
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-----VG-LS-------DPRLTVHVGDGFRF  123 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----~~-~~-------~~~~~~~~~d~~~~  123 (197)
                      ++|..||+|.=+  ++..+++.+  .+|+.+|.+++.++.+.+......     .+ ..       ..++++ ..|..+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA   78 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence            478899998533  333344442  689999999999887765321100     00 00       012222 2333222


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +    ...|+|+...+..     .-....++.++.+.++|+..++.++.
T Consensus        79 ~----~~aD~Vi~avpe~-----~~~k~~~~~~l~~~~~~~~il~~~tS  118 (288)
T PRK09260         79 V----ADADLVIEAVPEK-----LELKKAVFETADAHAPAECYIATNTS  118 (288)
T ss_pred             h----cCCCEEEEeccCC-----HHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            2    4579999877531     11125677888889999887766653

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.85  E-value=2.2  Score=34.57  Aligned_cols=98  Identities=23%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+|. |..+..+++..+ .+++++.-+++..+.+++.- .      ..-+.....+..+.+..  ....+|
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~vd  229 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLRELTDGEGAD  229 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHHhCCCCCC
Confidence            4567999998753 556666666654 67888888888887775531 1      11122222232222222  234589


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++....          ....+..+.+.|+++|.++...
T Consensus       230 ~vld~~g----------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         230 VVIDATG----------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             EEEECCC----------CHHHHHHHHHHHhcCCEEEEEc
Confidence            9986531          0346688899999999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=91.67  E-value=0.49  Score=32.03  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=39.2

Q ss_pred             ceeEEEECCCCCCCC-----------CcccccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHHHHHHHH
Q psy4592         130 EFDVIITDSSDPVGP-----------AESLFQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQHCA  189 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~-----------~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~  189 (197)
                      +||+|+-|||.....           ...++ .-|++...++|  +|.+.+-+.+.|. ..+..+.+.+.+.
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY-~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~   70 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLY-ILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLL   70 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHH-HHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHh
Confidence            599999999853321           11122 34888888888  9999887777787 6666666666554

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=91.61  E-value=5.6  Score=31.35  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeEEEECC
Q psy4592          62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDVIITDS  138 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~I~~~~  138 (197)
                      |..-+|+=-++..+.+..  .++..+|+-|+=....+++|.      .+.++.+..+|....+...   .++=-+|+.||
T Consensus        93 l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence            788899887877776553  689999999999999999987      3578999999987766542   34456899999


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      |+....+.+.. .+.+++..+.. ++|...++  -|.......+.+++.+++.
T Consensus       165 PfE~~~eY~rv-v~~l~~~~kRf-~~g~yaiW--YPik~r~~~~~f~~~L~~~  213 (279)
T COG2961         165 PFELKDEYQRV-VEALAEAYKRF-ATGTYAIW--YPIKDRRQIRRFLRALEAL  213 (279)
T ss_pred             CcccccHHHHH-HHHHHHHHHhh-cCceEEEE--EeecchHHHHHHHHHHhhc
Confidence            87554433211 34455555554 45555554  2555667777777777655

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.58  E-value=5.6  Score=32.43  Aligned_cols=110  Identities=18%  Similarity=0.297  Sum_probs=57.2

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +.+.+|..||+|. |.....++...+. .++..+|++++.++--..-+... ..+. .++.+..+|..+ +    ...|+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~-~~~~-~~~~i~~~~~~~-~----~~adi   76 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHA-VPFT-SPTKIYAGDYSD-C----KDADL   76 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhh-cccc-CCeEEEeCCHHH-h----CCCCE
Confidence            4557999999976 5444443333333 37999999877553222222111 0011 245666566433 2    34799


Q ss_pred             EEECCCCCCCCC---cccc--cHHHHHHHHhhc---CCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPA---ESLF--QASYFELMSRAL---RPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~---~~l~--~~~~~~~~~~~L---kpgG~l~~~~~  172 (197)
                      |+...-.+..+.   ..++  +...++++...+   .|+|.+++.++
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            998654333221   1111  122344433222   48998877654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.54  E-value=2  Score=34.64  Aligned_cols=99  Identities=21%  Similarity=0.262  Sum_probs=57.2

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+||.+|+|. |..+..+++..+...+++++.+++..+.+++. ..     . .-+.....+.........+.+|++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GA-----T-ETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC-----e-EEecCCCCCHHHHHHhcCCCCcEE
Confidence            3557999998652 44555566665533388888888888877553 11     0 001111111111111124569999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....          ....+..+.+.|+++|.++...
T Consensus       231 ~~~~~----------~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         231 IEATG----------VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             EECCC----------ChHHHHHHHHHHhcCCEEEEEe
Confidence            85431          1346788889999999988653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=91.54  E-value=0.79  Score=38.42  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             CCeEEEEcchHHHHhh-cCCceeEEEE-CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         111 PRLTVHVGDGFRFMSE-HQQEFDVIIT-DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~-~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++++++++++.+.+.. +++++|..+. |.+. |..+..+  .+.++++.+.++|||+++..+..
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm~~~~~--~~~~~~l~~~~~pgaRV~~Rsa~  336 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WMDPEQL--NEEWQELARTARPGARVLWRSAA  336 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hCCHHHH--HHHHHHHHHHhCCCCEEEEeeCC
Confidence            6899999999999875 3789997665 5443 3333222  67889999999999999998743

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.23  E-value=2.5  Score=35.84  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|+.+|+|.=+.... .++..+ .+++++|.+|.-.+.|+.. .          .+..  +..+.+    ..+|+|+
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v----~~aDVVI  262 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-G----------YEVM--TMEEAV----KEGDIFV  262 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH----cCCCEEE
Confidence            568999999997444333 444444 5899999999887777652 1          1111  222322    3479998


Q ss_pred             ECCCCCCCCCcccccHHHHHH-HHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFEL-MSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~-~~~~LkpgG~l~~~~  171 (197)
                      ....     .     ...+.. ..+.+|+||+++...
T Consensus       263 ~atG-----~-----~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         263 TTTG-----N-----KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             ECCC-----C-----HHHHHHHHHhcCCCCcEEEEeC
Confidence            6431     1     334554 488999999988765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=91.21  E-value=0.45  Score=36.07  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             eeEEEECCCCCCCCC---cc------------cccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         131 FDVIITDSSDPVGPA---ES------------LFQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~---~~------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      .|+|+.|||......   ..            -+..+++.++.++|||+|.++++......
T Consensus         1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~   61 (231)
T PF01555_consen    1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREI   61 (231)
T ss_dssp             EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEE
T ss_pred             CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhh
Confidence            489999998655433   00            01245788999999999999998765444

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=91.18  E-value=3  Score=33.92  Aligned_cols=99  Identities=24%  Similarity=0.297  Sum_probs=57.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc----hHHHHhh-cCC
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD----GFRFMSE-HQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~-~~~  129 (197)
                      .++.+||..|+|. |..+..+++..+...++++.-+++..+.+++. ..      ..-+.....+    ....... ...
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~  233 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence            4567898887654 44555666665533388888888777777553 21      1111111112    1122222 234


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+|+|+....     .     ...++.+.+.|+++|.++...
T Consensus       234 ~~d~vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         234 GPDVVIECTG-----A-----ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCEEEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            5999985432     0     236688899999999988653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=91.16  E-value=3  Score=33.04  Aligned_cols=112  Identities=14%  Similarity=0.113  Sum_probs=67.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCcee-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFD-  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D-  132 (197)
                      ....|+.+|||.=.-...+.  .+ ..+..+|+| |++++.-++.++..+ .....+.+++..|+.+.+...  ...|| 
T Consensus        81 g~~qvV~LGaGlDTr~~Rl~--~~-~~~~~~EvD~P~v~~~K~~~l~~~~-~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~  156 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRLP--WP-DGTRVFEVDQPAVLAFKEKVLAELG-AEPPAHRRAVPVDLRQDWPAALAAAGFDP  156 (260)
T ss_pred             CCcEEEEeCCccccHHHhcC--CC-CCCeEEECCChHHHHHHHHHHHHcC-CCCCCceEEeccCchhhHHHHHHhCCCCC
Confidence            34689999999865544442  22 245667776 677776666665321 112357888888986433221  12233 


Q ss_pred             ----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         133 ----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       133 ----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                          ++++.....+.+...  ...+++.+.+...||+.+++....+
T Consensus       157 ~~ptl~i~EGvl~YL~~~~--v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       157 TAPTAWLWEGLLMYLTEEA--VDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             CCCeeeeecchhhcCCHHH--HHHHHHHHHHhCCCCcEEEEEeccc
Confidence                455555444443322  1568888888888999999976444

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=91.01  E-value=1.1  Score=38.34  Aligned_cols=90  Identities=16%  Similarity=0.211  Sum_probs=58.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEE------EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAY------LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~------~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  130 (197)
                      .+++|+.||||+=+.+.++-.+.....++      +||.+....+.|++.           ..+  ..+..+.+    +.
T Consensus        35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d-----------GF~--v~~~~Ea~----~~   97 (487)
T PRK05225         35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-----------GFK--VGTYEELI----PQ   97 (487)
T ss_pred             CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc-----------CCc--cCCHHHHH----Hh
Confidence            45799999999865554443333334555      555555555555442           111  23444544    45


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .|+|++-.|...       ...+.+++...||||..|.+.
T Consensus        98 ADvVviLlPDt~-------q~~v~~~i~p~LK~Ga~L~fs  130 (487)
T PRK05225         98 ADLVINLTPDKQ-------HSDVVRAVQPLMKQGAALGYS  130 (487)
T ss_pred             CCEEEEcCChHH-------HHHHHHHHHhhCCCCCEEEec
Confidence            899998886431       255679999999999999985

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.97  E-value=4  Score=33.67  Aligned_cols=99  Identities=14%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHh-hcCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMS-EHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~-~~~~~~  131 (197)
                      ..+.+||.+|+|. |..+..+++..+..++++++.+++-.+.+++. ..      ..-+....  .+..+.+. .....+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~  255 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV  255 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence            4567999998742 22334455665544799999999888888653 21      00111111  11122222 123468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-..-     .     ...+..+.+.|+++ |.++...
T Consensus       256 d~vid~~g-----~-----~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         256 DYSFECTG-----N-----ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             CEEEECCC-----C-----hHHHHHHHHhcccCCCEEEEEc
Confidence            99884331     1     23567788889885 8888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.91  E-value=3.5  Score=34.13  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      +.+.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. ..      ..-+....  .+..+.+.. ..+.+
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~  256 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGV  256 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCC
Confidence            4567999998753 33445566665534799999999988888663 21      11111111  112222221 22368


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-..-     .     ...+.++.+.++++ |.+++..
T Consensus       257 d~vid~~G-----~-----~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       257 DYSFECIG-----N-----VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CEEEECCC-----C-----HHHHHHHHHHhhcCCCeEEEEe
Confidence            98885431     1     34567778899886 9887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.66  E-value=2  Score=36.09  Aligned_cols=74  Identities=15%  Similarity=0.261  Sum_probs=46.6

Q ss_pred             CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEEE
Q psy4592          59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I~  135 (197)
                      ++||.||||. |......+...+..+|+..|-+++..+.+....        ..+++..+.|+.+.-.  .--..+|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEEE
Confidence            5899999964 222222222333379999999988877776643        2367777777765311  1234569999


Q ss_pred             ECCCC
Q psy4592         136 TDSSD  140 (197)
Q Consensus       136 ~~~~~  140 (197)
                      ...+.
T Consensus        74 n~~p~   78 (389)
T COG1748          74 NAAPP   78 (389)
T ss_pred             EeCCc
Confidence            87753

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=90.63  E-value=3.3  Score=33.83  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D  132 (197)
                      .++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. ..      ..-+.....+..+.+.. . ...+|
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d  243 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD  243 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence            456789999864 223334455555533788888888888877653 21      11112222233332322 2 23599


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-...     .     ...++.+.+.|+++|.++...
T Consensus       244 ~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         244 VSFDCAG-----V-----QATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             EEEECCC-----C-----HHHHHHHHHhccCCCEEEEEc
Confidence            9985431     0     346678889999999988754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.63  E-value=0.45  Score=35.86  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHH
Q psy4592          55 HPNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIE   95 (197)
Q Consensus        55 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~   95 (197)
                      .+.+++||.+|.. +|.....++..  .++++.+|+.|.+-.
T Consensus        42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~   81 (254)
T COG4017          42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRG   81 (254)
T ss_pred             ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHh
Confidence            3677899999997 56666666654  379999999997743

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=90.61  E-value=1.2  Score=35.65  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=52.5

Q ss_pred             CeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+|+.+|.|  .|.++..+.+.+....+++.|.+....+.+... .          +.....+  +.........|+|+.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-g----------v~d~~~~--~~~~~~~~~aD~Viv   70 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-G----------VIDELTV--AGLAEAAAEADLVIV   70 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-C----------ccccccc--chhhhhcccCCEEEE
Confidence            578899987  345556666666556788888887776666432 1          1111111  000111345899998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      ..|...       +.++++++...|++|..+.
T Consensus        71 avPi~~-------~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          71 AVPIEA-------TEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             eccHHH-------HHHHHHHhcccCCCCCEEE
Confidence            775322       2567777777777776655

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.59  E-value=3.3  Score=27.93  Aligned_cols=93  Identities=17%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             EEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeEEE
Q psy4592          61 VLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDVII  135 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~I~  135 (197)
                      |+.+|+|  .++..+++.  .....++.+|.+++.++.++..           .+.++.+|+.+.  +.. .-.++|.|+
T Consensus         1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence            3455655  455554432  1225899999999998888663           256888888753  222 245789888


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...     +..  .--.+....+-+.|...++....+
T Consensus        68 ~~~~-----~d~--~n~~~~~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   68 ILTD-----DDE--ENLLIALLARELNPDIRIIARVND   98 (116)
T ss_dssp             EESS-----SHH--HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred             EccC-----CHH--HHHHHHHHHHHHCCCCeEEEEECC
Confidence            7663     111  012334455777888888886644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=90.59  E-value=4.5  Score=33.40  Aligned_cols=99  Identities=14%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc--chHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG--DGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~-~~~~~  131 (197)
                      +.+.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++. ..      ..-+.....  +..+.+.. ..+.+
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~  257 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV  257 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence            4567999998642 23334455665533799999999988888652 21      111111111  22222222 23368


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-..-     .     ...+..+.+.|+++ |.++...
T Consensus       258 d~vid~~g-----~-----~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         258 DYTFECIG-----N-----VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             cEEEECCC-----C-----hHHHHHHHHhhccCCCeEEEEc
Confidence            99985331     1     34667788899887 9888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=90.55  E-value=3.1  Score=33.88  Aligned_cols=90  Identities=12%  Similarity=0.156  Sum_probs=55.4

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+||..|+|. |..+..+++..+ .++++++.+++-.+.+++.-.      +  .  ++  |..+   ...+.+|++
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga------~--~--vi--~~~~---~~~~~~d~~  227 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGA------A--S--AG--GAYD---TPPEPLDAA  227 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCC------c--e--ec--cccc---cCcccceEE
Confidence            4567999999753 334455666555 578899999988888877421      1  0  11  1000   112357876


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +..-.     .     ...++...+.|+++|++++..
T Consensus       228 i~~~~-----~-----~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       228 ILFAP-----A-----GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             EECCC-----c-----HHHHHHHHHhhCCCcEEEEEe
Confidence            54221     1     236788889999999998765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=90.39  E-value=4.9  Score=33.16  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~  133 (197)
                      ..+.+||..|+|. |..+..+++..+...+++++.++.-.+.+++. ..      ..-+.....+..+.+. .....+|+
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~------~~~i~~~~~~~~~~v~~~~~~~~d~  257 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA------THVINPKEEDLVAAIREITGGGVDY  257 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------cEEecCCCcCHHHHHHHHhCCCCcE
Confidence            3457899997643 44445566665544699999999888877653 11      0001111112222222 12356899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-...     .     ...+..+.+.|+++|.++...
T Consensus       258 vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         258 ALDTTG-----V-----PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             EEECCC-----C-----cHHHHHHHHHhccCCEEEEeC
Confidence            985431     1     235678889999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.22  E-value=7.5  Score=31.46  Aligned_cols=107  Identities=18%  Similarity=0.286  Sum_probs=53.4

Q ss_pred             eEEEEeCCc-hHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          60 KVLIVGGGD-GGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~-G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +|..||+|. |..... ++...-..+++.+|.+++..+.....+.... .....+..+..++..+ +    ...|+|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIit   75 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVIT   75 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEEc
Confidence            688999975 322222 2333222489999998876543332221100 0012234555555432 2    458999986


Q ss_pred             CCCCCCCC---ccccc------HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         138 SSDPVGPA---ESLFQ------ASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       138 ~~~~~~~~---~~l~~------~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ...+..+.   ..++.      .++.+.+.+ -.|+|++++.++.
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP  119 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNP  119 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCh
Confidence            65433221   11111      223334444 4788887776543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.21  E-value=0.87  Score=37.53  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=22.2

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      ..+||.+|||. |+.....+...+..+++.+|-|.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45899999984 43333333333556899999764

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=90.01  E-value=4.3  Score=32.87  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=57.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~  133 (197)
                      .++.+||..|+|. |..+..+++..+...++++.-+++..+.+++. ..      ..-+........+..... ...+|+
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~  230 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL  230 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence            4556899998654 45555666665532388888888777776542 11      001111111122222222 245999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....     .     ...+..+.+.|+++|.++...
T Consensus       231 vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         231 VIEAAG-----S-----PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            985431     1     346678889999999988653

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG2651|consensus

Probab=90.00  E-value=0.57  Score=38.99  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      +.|.|+|.|-|.++..+.-.++ ..|.+||-|....+.|++
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence            6899999999999999887765 799999998777666543

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=89.99  E-value=7  Score=32.89  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             CCCCeEEEEeC-C-chHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE----cchHHHHhh-
Q psy4592          56 PNPKKVLIVGG-G-DGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV----GDGFRFMSE-  126 (197)
Q Consensus        56 ~~~~~vLdiG~-G-~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~-  126 (197)
                      ..+.+||.+|+ | .|.++..+++..  +..+++++|.+++-++.+++.+..... .......++.    .+..+.+.. 
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHH
Confidence            34578999983 3 555666666653  224799999999999998885321000 0011111121    233332322 


Q ss_pred             -cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 -HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 -~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ....+|+|+....     .     ...+..+.+.++++|.+++..
T Consensus       253 t~g~g~D~vid~~g-----~-----~~~~~~a~~~l~~~G~~v~~~  288 (410)
T cd08238         253 TGGQGFDDVFVFVP-----V-----PELVEEADTLLAPDGCLNFFA  288 (410)
T ss_pred             hCCCCCCEEEEcCC-----C-----HHHHHHHHHHhccCCeEEEEE
Confidence             1346998886431     1     346678889999998766543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.95  E-value=2.1  Score=34.33  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             CeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCC------CCCCCC-------CCeEEEEcchHHH
Q psy4592          59 KKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGM------AVGLSD-------PRLTVHVGDGFRF  123 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~~-------~~~~~~~~d~~~~  123 (197)
                      ++|..||+|.-+.+.+  ++..  ...|+.+|.+++.++.+.+.+...      ......       .++++. .|.. .
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H
Confidence            5799999986554433  3333  368999999998887654321100      000000       123322 3332 1


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +    ...|+|+...+...     -....+++++...++|+..++.++.+
T Consensus        81 ~----~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~  121 (292)
T PRK07530         81 L----ADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSS  121 (292)
T ss_pred             h----cCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            2    35799998764211     11256788899999999877755433

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=89.83  E-value=2.4  Score=35.64  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=14.7

Q ss_pred             CCCeEEEEeCCchHhHHHH
Q psy4592          57 NPKKVLIVGGGDGGVAREV   75 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l   75 (197)
                      ++..|+|+|||+|..+..+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             cceeEEEecCCCCccHHHH
Confidence            4568999999999766443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.82  E-value=4.4  Score=36.32  Aligned_cols=95  Identities=21%  Similarity=0.312  Sum_probs=57.6

Q ss_pred             CCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeE
Q psy4592          58 PKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~  133 (197)
                      ..+|+.+|+|.=+ .....+...+ ..++.+|.|++.++.+++.           ..+++.+|+.+.  +.. .-+++|+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence            3589999998633 2222223322 6899999999999888662           245778887753  222 2457898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++.......       ....-...+.+.|+-.++...
T Consensus       468 vvv~~~d~~~-------n~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        468 LINAIDDPQT-------SLQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             EEEEeCCHHH-------HHHHHHHHHHhCCCCeEEEEE
Confidence            8876532111       112233445557777776654

>PRK10083 putative oxidoreductase; Provisional

Probab=89.81  E-value=4.2  Score=32.90  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .++.+||..|+|. |..+..+++. .+...+++++.+++-.+.+++.-.       ..-+.....+..+.+......+|+
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~g~~~d~  231 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-------DWVINNAQEPLGEALEEKGIKPTL  231 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-------cEEecCccccHHHHHhcCCCCCCE
Confidence            4567999999642 1222334443 343468889998888888876421       001111122333333322223566


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....     .     ...+..+.+.|+++|.++...
T Consensus       232 vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        232 IIDAAC-----H-----PSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence            664321     0     235678889999999998754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.62  E-value=1.2  Score=33.81  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=22.1

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ..+||.+|||. |+.....+...+..+++.+|.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            35999999984 4433333333355789999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=89.62  E-value=6.8  Score=31.79  Aligned_cols=99  Identities=26%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+|. |..+..+++..+..++++++.++.-.+.+++. ..      ..-+.....+....+..  ....+|
T Consensus       165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d  237 (345)
T cd08286         165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GA------THTVNSAKGDAIEQVLELTDGRGVD  237 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CceeccccccHHHHHHHHhCCCCCC
Confidence            3456888876532 22333455555435788899888777777653 11      11122222232222221  234699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+...     ..     ...++.+.+.|+++|.++...
T Consensus       238 ~vld~~-----g~-----~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         238 VVIEAV-----GI-----PATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             EEEECC-----CC-----HHHHHHHHHhccCCcEEEEec
Confidence            998433     11     335678889999999998653

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=89.48  E-value=5.9  Score=32.71  Aligned_cols=95  Identities=19%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHH-HHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVI-EVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+.+||..|+|. |.++..+++..+ .++++++.+++-. +.+++ +..        ..-+...+... +....+.+|+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~-~Ga--------~~vi~~~~~~~-~~~~~~~~D~  250 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINR-LGA--------DSFLVSTDPEK-MKAAIGTMDY  250 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHh-CCC--------cEEEcCCCHHH-HHhhcCCCCE
Confidence            3567899988753 334445566554 5777888766543 33333 211        00010011111 2221235898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-...     .     ...++++.+.|+++|.++...
T Consensus       251 vid~~g-----~-----~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        251 IIDTVS-----A-----VHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             EEECCC-----C-----HHHHHHHHHHhcCCcEEEEeC
Confidence            884321     1     345678889999999998764

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=89.20  E-value=9.7  Score=31.37  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=57.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||..|+|. |.++..+++..+..++++++.+++-.+.+++. ..      ..-+....  .+..+.+.. ..+.+
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~  258 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV  258 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence            4567999998642 22334455655534799999999988888663 21      10111111  012222221 23368


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+++-..-     .     ...+..+.+.++++ |.+++..
T Consensus       259 d~vid~~G-----~-----~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         259 DYSFECTG-----N-----IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CEEEECCC-----C-----hHHHHHHHHHhhcCCCEEEEEC
Confidence            98874321     1     34667788899996 8888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=89.18  E-value=4.8  Score=28.74  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             CeEEEEeCCchHhHHH----HhcCCCCccEEEEEcC--HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---------
Q psy4592          59 KKVLIVGGGDGGVARE----VLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---------  123 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---------  123 (197)
                      +.||..|+++| ++.+    +++. +...+..+.-+  .+..+...+.++.     ...++.++..|+.+.         
T Consensus         1 k~~lItGa~~g-iG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~   73 (167)
T PF00106_consen    1 KTVLITGASSG-IGRALARALARR-GARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEE   73 (167)
T ss_dssp             EEEEEETTTSH-HHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHH
T ss_pred             CEEEEECCCCH-HHHHHHHHHHhc-CceEEEEeeecccccccccccccccc-----cccccccccccccccccccccccc
Confidence            36888888765 4444    4444 33577888877  3444433333322     235788888875532         


Q ss_pred             HhhcCCceeEEEECCCCCC
Q psy4592         124 MSEHQQEFDVIITDSSDPV  142 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~  142 (197)
                      +....++.|.++.+.....
T Consensus        74 ~~~~~~~ld~li~~ag~~~   92 (167)
T PF00106_consen   74 VIKRFGPLDILINNAGIFS   92 (167)
T ss_dssp             HHHHHSSESEEEEECSCTT
T ss_pred             ccccccccccccccccccc
Confidence            1112468999999875433

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=89.00  E-value=5.9  Score=30.67  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      ..+++|..|+ +|.++..+++..  ...+++.++-+++-.+...+.+..     ...++.++.+|+.+.-.         
T Consensus        11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~Dl~d~~~i~~~~~~~~   84 (259)
T PRK08213         11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-----LGIDALWIAADVADEADIERLAEETL   84 (259)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3468888885 556666655421  125888999887766655544432     12456777777664211         


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ...++.|.|+.+..
T Consensus        85 ~~~~~id~vi~~ag   98 (259)
T PRK08213         85 ERFGHVDILVNNAG   98 (259)
T ss_pred             HHhCCCCEEEECCC
Confidence            11246899998864

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.86  E-value=1.3  Score=34.25  Aligned_cols=33  Identities=39%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ..+|+.+|||. |+.....+...+..+++.+|-+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35999999984 4433333333455788888643

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=88.84  E-value=6.8  Score=32.89  Aligned_cols=109  Identities=11%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~-~~~~  131 (197)
                      ..+.+||..|+|. |..+..+++..+...++++|.+++-++.+++. ..       ..+.... .+..+.+.. . ...+
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga-------~~v~~~~~~~~~~~v~~~~~~~g~  255 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC-------ETVDLSKDATLPEQIEQILGEPEV  255 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC-------eEEecCCcccHHHHHHHHcCCCCC
Confidence            4567888877753 23334455555544566778888888888773 21       1111111 122222222 2 2468


Q ss_pred             eEEEECCCCCCCCC---cc-cccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         132 DVIITDSSDPVGPA---ES-LFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       132 D~I~~~~~~~~~~~---~~-l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+++-..-.+....   .. --....++++.+.++++|.+++...
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            98885432110000   00 0002468889999999999998653

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=88.74  E-value=7.7  Score=32.05  Aligned_cols=100  Identities=17%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             CCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~  133 (197)
                      +.+.+|..+|||.=+++ ..-++..+..+|.+||++++-+++|++.=.-  ..++.....    |+.+.+... +.-.|.
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT--~~vn~~~~~----~vv~~i~~~T~gG~d~  257 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT--HFVNPKEVD----DVVEAIVELTDGGADY  257 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc--eeecchhhh----hHHHHHHHhcCCCCCE
Confidence            45567777777643333 3333445567999999999999999886211  001111111    455544442 335666


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+-..     .+     .+.+++....++++|..++..
T Consensus       258 ~~e~~-----G~-----~~~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         258 AFECV-----GN-----VEVMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             EEEcc-----CC-----HHHHHHHHHHHhcCCeEEEEe
Confidence            65222     11     457888889999999888764

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=88.63  E-value=6.9  Score=31.35  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=58.3

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCcee
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D  132 (197)
                      ..+.+||..|+  +.|..+..+++..+ .++++++.++.-.+.+++.+..      ..-+.....+..+.+. .....+|
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d  216 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGID  216 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCce
Confidence            34578999984  35556566666654 5888888888887877664321      1111111112222222 1235699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++....           ...++.+.+.|+++|.++...
T Consensus       217 ~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         217 VYFDNVG-----------GEILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             EEEEcch-----------HHHHHHHHHhcCCCceEEEEe
Confidence            8884321           235677888999999987653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=88.60  E-value=9.4  Score=30.21  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+.+||..|+  +.|..+..+++..+ .+++++..+++-.+.+++ +..       ..+-....+..+.+......+|+
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~i~~~~~~~d~  211 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKE-LGA-------DEVVIDDGAIAEQLRAAPGGFDK  211 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh-cCC-------cEEEecCccHHHHHHHhCCCceE
Confidence            45679999986  45666666777655 678888888887777754 221       11100112222222221457999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....           ...+..+.+.|+++|.++...
T Consensus       212 vl~~~~-----------~~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         212 VLELVG-----------TATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             EEECCC-----------hHHHHHHHHHhccCCEEEEEc
Confidence            984331           235677889999999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.54  E-value=5.5  Score=33.98  Aligned_cols=87  Identities=17%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|+.+|+|.=+.... .++..+ .+|+++|.++.....+...           ..++  .+..+.+    ..+|+|+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-----------G~~v--~~l~eal----~~aDVVI  272 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-----------GFRV--MTMEEAA----ELGDIFV  272 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-----------CCEe--cCHHHHH----hCCCEEE
Confidence            567999999986443332 333444 5899999998664433321           1111  2333333    3589998


Q ss_pred             ECCCCCCCCCcccccHHHHH-HHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFE-LMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~-~~~~~LkpgG~l~~~~  171 (197)
                      ...     ..     ...+. ...+.+|+|++++...
T Consensus       273 ~aT-----G~-----~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        273 TAT-----GN-----KDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             ECC-----CC-----HHHHHHHHHhcCCCCCEEEEcC
Confidence            643     11     23444 6778899999877644

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.51  E-value=8.9  Score=30.81  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+||.+|+| .|..+..+++..+ .+++++..+++..+.+++. ..     . .-+.....+.   .....+.+|++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~---~~~~~~~~d~v  229 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GA-----D-EVVDSGAELD---EQAAAGGADVI  229 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CC-----c-EEeccCCcch---HHhccCCCCEE
Confidence            445689999886 5555555666654 5888999888888877542 11     0 0011111111   11112468988


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....          ....+..+.+.|+++|.++...
T Consensus       230 i~~~~----------~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         230 LVTVV----------SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EECCC----------cHHHHHHHHHhcccCCEEEEEC
Confidence            85431          1345678889999999888754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=88.43  E-value=1.8  Score=34.21  Aligned_cols=114  Identities=25%  Similarity=0.354  Sum_probs=52.7

Q ss_pred             hhHHHHHHhhcc--cCCCCCCeEEEEeCCchH---hHHHHh-cCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCe
Q psy4592          41 FSYSEMIAFLPL--CSHPNPKKVLIVGGGDGG---VAREVL-KHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL  113 (197)
Q Consensus        41 ~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~---~~~~l~-~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~  113 (197)
                      ..|+|+...+.-  +-.+...+||.+|.|+--   =+..++ ++.| .+.++-.|+.+-+               .+.+ 
T Consensus        43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~-  106 (299)
T PF06460_consen   43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDAD-  106 (299)
T ss_dssp             HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSS-
T ss_pred             HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccC-
Confidence            457787777643  224566899999998531   112233 3343 2444445554322               1122 


Q ss_pred             EEEEcchHHHHhhcCCceeEEEECCCCCCCC--------CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGP--------AESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       114 ~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~--------~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ..+.+|-+.+.  .+.++|+|++|...+...        ...++ .-+..-++..|+-||-+.+-...
T Consensus       107 ~~~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~i~~kLaLGGSvaiKiTE  171 (299)
T PF06460_consen  107 QSIVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGFIKEKLALGGSVAIKITE  171 (299)
T ss_dssp             EEEES-GGGEE--ESS-EEEEEE----TTS-SS-S------THH-HHHHHHHHHHEEEEEEEEEEE-S
T ss_pred             CceeccccccC--CCCcccEEEEecccccccccccccCCccccH-HHHHHHHHhhhhcCceEEEEeec
Confidence            34557755433  257999999999742210        11111 23444557889999998887633

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.43  E-value=2.2  Score=34.41  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CeEEEEeCCchHh--HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC--------CCeEEEEcchHHHHhhcC
Q psy4592          59 KKVLIVGGGDGGV--AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--------PRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        59 ~~vLdiG~G~G~~--~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~  128 (197)
                      ++|..||+|.-+.  +..+++. + .+++.+|.+++.++.+++...........        .++++ ..|..+.+    
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----   77 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV----   77 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence            5799999985443  3334433 2 68999999998887776531100000000        11222 23332222    


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...|+|+...+...     -....++.++...++++..++.++
T Consensus        78 ~~aDlVi~av~~~~-----~~~~~v~~~l~~~~~~~~ii~s~t  115 (311)
T PRK06130         78 SGADLVIEAVPEKL-----ELKRDVFARLDGLCDPDTIFATNT  115 (311)
T ss_pred             ccCCEEEEeccCcH-----HHHHHHHHHHHHhCCCCcEEEECC
Confidence            35799998764211     012557777777777766555443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=88.36  E-value=3.6  Score=32.94  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE---EEcchHHHHhhcCCceeEE
Q psy4592          60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV---HVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~D~I  134 (197)
                      +|+.+|+|.-+....  +.+. + ..|+.++. ++.++..++.--... .... ...+   ...|.    ......+|+|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~----~~~~~~~d~v   72 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIR-SDHG-DAVVPGPVITDP----EELTGPFDLV   72 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEE-eCCC-eEEecceeecCH----HHccCCCCEE
Confidence            688999987654433  3333 2 57888888 666665544210000 0000 1111   01121    1112578999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.....+.       .++.++.+...+.++..++..
T Consensus        73 ilavk~~~-------~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         73 ILAVKAYQ-------LDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             EEEecccC-------HHHHHHHHHhhcCCCCEEEEe
Confidence            88764321       266778888888887766543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.34  E-value=2.7  Score=33.68  Aligned_cols=99  Identities=17%  Similarity=0.287  Sum_probs=55.4

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC--------CCCC-C-------CCCeEEEEcch
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM--------AVGL-S-------DPRLTVHVGDG  120 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~-~-------~~~~~~~~~d~  120 (197)
                      ++|..||+|.=+  ++..++.. + .+|+.+|.+++.++.+++.+...        ..+. .       ..++.. ..|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence            479999998533  33334433 2 58999999999887665432210        0000 0       011222 1222


Q ss_pred             HHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         121 FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       121 ~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                       +.    ....|+|+...+...     -...++++++.+.++|+..++.+
T Consensus        81 -~~----~~~aDlVieav~e~~-----~~k~~~~~~l~~~~~~~~il~S~  120 (291)
T PRK06035         81 -ES----LSDADFIVEAVPEKL-----DLKRKVFAELERNVSPETIIASN  120 (291)
T ss_pred             -HH----hCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEEc
Confidence             11    134799997764211     11266888888888888876644

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.22  E-value=8.5  Score=31.68  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=57.3

Q ss_pred             CCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcC---CCCCCCC-CCCeEEEEcchHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLP---GMAVGLS-DPRLTVHVGDGFRFMSEHQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~---~~~~~~~-~~~~~~~~~d~~~~~~~~~~  129 (197)
                      +...+|..||+|..+.+..  +.+..   .++....+++.++..++.-.   .+..+.. ..++.. ..|..+.+    .
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~   76 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N   76 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence            3446899999997765544  33332   56677788888777765321   1100100 112322 34433322    4


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ..|+|+...+..       ..++.++++...++++..++..
T Consensus        77 ~aDlVilavps~-------~~~~vl~~i~~~l~~~~~vIsl  110 (341)
T PRK12439         77 CADVVVMGVPSH-------GFRGVLTELAKELRPWVPVVSL  110 (341)
T ss_pred             cCCEEEEEeCHH-------HHHHHHHHHHhhcCCCCEEEEE
Confidence            579998876521       1267888898889888755443

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=88.19  E-value=0.49  Score=38.32  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             CeEEEEeCCchHhHHHHhcCC--------------------CCccEEEEEcCH--HHHHHHHhhcCCC-----------C
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP--------------------SVESAYLVEIDN--RVIEVSKKYLPGM-----------A  105 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~--------------------~~~~v~~ve~~~--~~~~~a~~~~~~~-----------~  105 (197)
                      .+||-||.|.|+-..+++...                    +...++.|||.+  .+++.....+...           .
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            599999999987443333211                    114899999975  5666655544321           0


Q ss_pred             --CCCCCCCeEEEEcchHHHHhhc------CCceeEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         106 --VGLSDPRLTVHVGDGFRFMSEH------QQEFDVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       106 --~~~~~~~~~~~~~d~~~~~~~~------~~~~D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                        ..-..-+++|.+.|+...-...      .++.|+|....+.... ....--+..|+..+-..++||..+++.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence              0001125677777765432211      1234555543331110 000111467999999999999988775

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.10  E-value=6.4  Score=30.75  Aligned_cols=93  Identities=25%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCcc-EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVES-AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .++.+||..|+|. |..+..+++..+ .+ +++++.+++..+.+++.-..      . .+  .... ....  ....+|+
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~~------~-~~--~~~~-~~~~--~~~~~d~  162 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGPA------D-PV--AADT-ADEI--GGRGADV  162 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCCC------c-cc--cccc-hhhh--cCCCCCE
Confidence            4567899998754 445555666555 45 99999988888877664200      0 11  0000 0111  2346898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....     .     ...+....+.|+++|.++...
T Consensus       163 vl~~~~-----~-----~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         163 VIEASG-----S-----PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEccC-----C-----hHHHHHHHHHhcCCcEEEEEe
Confidence            885431     0     335677888999999887643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1209|consensus

Probab=87.75  E-value=5.8  Score=30.76  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH------HH-h
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR------FM-S  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~------~~-~  125 (197)
                      .+++.||..||..|+++-++++.  ..++.+++.--+ +.|.+++.+.--      .  ..++-+.+-.+      .+ .
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl------~--~~kLDV~~~~~V~~v~~evr~   76 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGL------K--PYKLDVSKPEEVVTVSGEVRA   76 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCC------e--eEEeccCChHHHHHHHHHHhh
Confidence            45679999999999999888863  233677666543 446666644310      1  12221122111      11 2


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      .+.++.|+.+.|.-.
T Consensus        77 ~~~Gkld~L~NNAG~   91 (289)
T KOG1209|consen   77 NPDGKLDLLYNNAGQ   91 (289)
T ss_pred             CCCCceEEEEcCCCC
Confidence            246899999987643

>PLN02494 adenosylhomocysteinase

Probab=87.71  E-value=10  Score=32.76  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|+.+|+|.=+...+ .++..+ .+|+++|.++.....+...           ...+.  +..+.+.    ..|+|+
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-----------G~~vv--~leEal~----~ADVVI  314 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-----------GYQVL--TLEDVVS----EADIFV  314 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-----------CCeec--cHHHHHh----hCCEEE
Confidence            468999999996443332 233344 5899999998654444331           01111  3334332    479998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC-CCCcChhHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG-TLWYSLDCVG  182 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~-~~~~~~~~~~  182 (197)
                      ....     ...+    +.+...+.||+||+++...- ....+...+.
T Consensus       315 ~tTG-----t~~v----I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~  353 (477)
T PLN02494        315 TTTG-----NKDI----IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE  353 (477)
T ss_pred             ECCC-----Cccc----hHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence            6331     1111    23667789999999987653 2334444443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=87.59  E-value=5.7  Score=30.26  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcC--HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          56 PNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      -.+++||.+|.|.=+....  +++.+  +.|+.++.+  ++..++++.           .+++++..+.....   -..+
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d---l~~~   70 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI---LEGA   70 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH---hCCc
Confidence            3567999999997554432  33333  688888654  344333321           26777777654221   2468


Q ss_pred             eEEEECCC
Q psy4592         132 DVIITDSS  139 (197)
Q Consensus       132 D~I~~~~~  139 (197)
                      |+|+..+.
T Consensus        71 ~lVi~at~   78 (205)
T TIGR01470        71 FLVIAATD   78 (205)
T ss_pred             EEEEECCC
Confidence            99887653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=87.53  E-value=12  Score=30.81  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+||..|+| .|..+..+++..+ .++++++.+++....+.+.+..        ...+...+... +......+|+++
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~~~~~~~~~~~~Ga--------~~~i~~~~~~~-~~~~~~~~D~vi  249 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSDKKREEALEHLGA--------DDYLVSSDAAE-MQEAADSLDYII  249 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhcCC--------cEEecCCChHH-HHHhcCCCcEEE
Confidence            45789988764 3334455666555 5677888777665555443321        11111112111 222223589888


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -...     .     ...++.+.+.|+++|.++...
T Consensus       250 d~~g-----~-----~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        250 DTVP-----V-----FHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             ECCC-----c-----hHHHHHHHHHhccCCEEEEEC
Confidence            5431     1     235677888999999988764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.45  E-value=8.1  Score=31.27  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+||..|+|. |..+..+++..+ .++++++.+++-.+.+++. ..      ..-+.....+..+.+... ..+|++
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~-~~~d~v  232 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL-GGAKLI  232 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc-CCCCEE
Confidence            4557999998542 233344555554 5788999988888888552 21      111111122322222222 358988


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....     .     ...+..+.+.|+++|.++...
T Consensus       233 i~~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         233 LATAP-----N-----AKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             EECCC-----c-----hHHHHHHHHHcccCCEEEEEe
Confidence            84321     0     346677889999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=87.42  E-value=9.7  Score=30.87  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=56.0

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+| .|..+..+++..+...+++++-++.-.+.+++. ..      ..-+.....+..+.+..  ....+|
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~l~~~~~~~~~d  232 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM-GA------TYVVNPFKEDVVKEVADLTDGEGVD  232 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEEcccccCHHHHHHHhcCCCCCC
Confidence            355688886654 233444455555532388888788777766553 10      11122222333333322  234689


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....          ....+..+.+.|+++|.++...
T Consensus       233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence            9986421          1346678889999999987754

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.39  E-value=1.1  Score=32.12  Aligned_cols=38  Identities=21%  Similarity=0.070  Sum_probs=24.5

Q ss_pred             EEeCCch--HhHHHHh--cCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          63 IVGGGDG--GVAREVL--KHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        63 diG~G~G--~~~~~l~--~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      |||+..|  .....+.  ...+..+++++|.+|...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443  344557899999999998888777

; PDB: 2PY6_A.

>PRK10637 cysG siroheme synthase; Provisional

Probab=87.37  E-value=4.1  Score=35.02  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             hhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH
Q psy4592          49 FLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM  124 (197)
Q Consensus        49 ~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  124 (197)
                      +++++..-.+++||.+|+|.=+.-..  +++..  ++|+.|  +++++..+++.+           .+++++..+.... 
T Consensus         3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~~-   68 (457)
T PRK10637          3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDES-   68 (457)
T ss_pred             eeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCChH-
Confidence            35555556778999999998655433  33333  566665  666666544322           3566666554321 


Q ss_pred             hhcCCceeEEEECC
Q psy4592         125 SEHQQEFDVIITDS  138 (197)
Q Consensus       125 ~~~~~~~D~I~~~~  138 (197)
                        .-+.+++|+...
T Consensus        69 --dl~~~~lv~~at   80 (457)
T PRK10637         69 --LLDTCWLAIAAT   80 (457)
T ss_pred             --HhCCCEEEEECC
Confidence              123467877654

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=87.33  E-value=14  Score=29.98  Aligned_cols=108  Identities=14%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             eEEEEeCCc-hHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          60 KVLIVGGGD-GGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~-G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +|-.||+|. |....+ ++...-..++..+|++++..+--..-+..-.......++++..+|..+ +    ...|+|+..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~-~----~~aDivvit   75 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD-C----ADADIIVIT   75 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH-h----CCCCEEEEC
Confidence            366889976 544433 333322247999999865443211111110000011356777777433 2    347999986


Q ss_pred             CCCCCCCC-----cccc--cHHH----HHHHHhhcCCCcEEEEEcCC
Q psy4592         138 SSDPVGPA-----ESLF--QASY----FELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       138 ~~~~~~~~-----~~l~--~~~~----~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .-.+..+.     ..++  +.+.    .+++.+. .|+|.+++.++.
T Consensus        76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNP  121 (307)
T cd05290          76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNP  121 (307)
T ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            54333221     1111  1223    3334444 488988876644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.24  E-value=3.7  Score=36.62  Aligned_cols=96  Identities=19%  Similarity=0.257  Sum_probs=58.9

Q ss_pred             CeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeEE
Q psy4592          59 KKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDVI  134 (197)
Q Consensus        59 ~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~I  134 (197)
                      .+|+.+|+|.=+.. ...++..+ ..++.+|.||+.++.+++.           ...++.||+.+.  +.. .-++.|++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence            57888888753322 22222222 6899999999999888652           245778887653  222 24578988


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++.......       ....-...|.+.|+..++....+
T Consensus       469 v~~~~d~~~-------n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        469 VITCNEPED-------TMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             EEEeCCHHH-------HHHHHHHHHHHCCCCeEEEEeCC
Confidence            876632111       11233345667888888876544

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=87.19  E-value=1.6  Score=32.51  Aligned_cols=101  Identities=19%  Similarity=0.276  Sum_probs=56.3

Q ss_pred             eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCC-----CCC-CC-------CCCeEEEEcchHHHH
Q psy4592          60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGM-----AVG-LS-------DPRLTVHVGDGFRFM  124 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----~~~-~~-------~~~~~~~~~d~~~~~  124 (197)
                      +|..+|+|+=+.+.+  ++..  +.+|+.+|.+++.++.+++.+...     ..+ ..       ..++++ ..|..+  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~--   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE--   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence            477899986443333  3333  379999999999988777654320     000 00       113332 233222  


Q ss_pred             hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         125 SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       125 ~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                        . ...|+|+=..+.     ..-...++|+++.+.+.|+-.|..++.+
T Consensus        76 --~-~~adlViEai~E-----~l~~K~~~~~~l~~~~~~~~ilasnTSs  116 (180)
T PF02737_consen   76 --A-VDADLVIEAIPE-----DLELKQELFAELDEICPPDTILASNTSS  116 (180)
T ss_dssp             --G-CTESEEEE-S-S-----SHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred             --H-hhhheehhhccc-----cHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence              1 268999866642     1112377999999999999999987643

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=87.16  E-value=2.3  Score=35.08  Aligned_cols=32  Identities=31%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             CCeEEEEeCCc-hHhH-HHHhcCCCCccEEEEEcC
Q psy4592          58 PKKVLIVGGGD-GGVA-REVLKHPSVESAYLVEID   90 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~v~~ve~~   90 (197)
                      ..+||.+|||. |+.. ..|+.. +..+++.+|-|
T Consensus        24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            45999999984 4333 333333 55799999976

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=87.05  E-value=15  Score=29.83  Aligned_cols=107  Identities=15%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh-cCCCCCCCCCCCeEEE-EcchHHHHhhcCCceeEEE
Q psy4592          59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKY-LPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+|-.||+|. |....+.+...+...++.+|++++..+ ++.. +.... ........+. ..|..+ +    ...|+|+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~~-~~~~~~~~i~~t~d~~~-~----~~aDiVI   74 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEAS-PVGGFDTKVTGTNNYAD-T----ANSDIVV   74 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhhh-hccCCCcEEEecCCHHH-h----CCCCEEE
Confidence            3688999986 333333222222237999999776433 2211 11100 0011122333 356433 2    3479999


Q ss_pred             ECCCCCCCCCcc---c--cc----HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAES---L--FQ----ASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~---l--~~----~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .....+..+...   +  .+    .+..+++.+. .|++.+++.++.
T Consensus        75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP  120 (305)
T TIGR01763        75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNP  120 (305)
T ss_pred             EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence            876554432210   1  01    2344455555 488888876654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=87.04  E-value=10  Score=31.36  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             eEEEEeCCchHhHHHHhcCCCC--------ccEEEEEc-----CHHHHHHHHhhcCCCC--CCC-CCCCeEEEEcchHHH
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSV--------ESAYLVEI-----DNRVIEVSKKYLPGMA--VGL-SDPRLTVHVGDGFRF  123 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~--------~~v~~ve~-----~~~~~~~a~~~~~~~~--~~~-~~~~~~~~~~d~~~~  123 (197)
                      +|..||+|.++.+.+..-....        .+|+....     +++..+...+......  .+. -++++++ ..|..+.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA   79 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence            4678999988766553221111        35655555     6666666554322110  011 1234554 3565554


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      +.    ..|+|+...|....       ++.++++...|+++-.++
T Consensus        80 l~----~ADiIIlAVPs~~i-------~~vl~~l~~~l~~~~~iV  113 (342)
T TIGR03376        80 AK----GADILVFVIPHQFL-------EGICKQLKGHVKPNARAI  113 (342)
T ss_pred             Hh----cCCEEEEECChHHH-------HHHHHHHHhhcCCCCEEE
Confidence            43    36888877652111       567788888887654443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=86.97  E-value=9.3  Score=30.79  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=56.4

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~  133 (197)
                      ..+.+||..|+| .|..+..+++.....++++++-+++-.+.+++. ..     + .-+.... .+..+.+....+.+|.
T Consensus       161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~-----~-~v~~~~~~~~~~~~v~~~~~~~d~  233 (338)
T PRK09422        161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA-----D-LTINSKRVEDVAKIIQEKTGGAHA  233 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC-----c-EEecccccccHHHHHHHhcCCCcE
Confidence            456799999953 233444455542236899999999888888553 21     0 0111111 1212223222235785


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.+..          ..+.++.+.+.|+++|.++...
T Consensus       234 vi~~~~----------~~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        234 AVVTAV----------AKAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             EEEeCC----------CHHHHHHHHHhccCCCEEEEEe
Confidence            554431          1456788899999999988653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=86.97  E-value=7.3  Score=26.25  Aligned_cols=108  Identities=17%  Similarity=0.219  Sum_probs=65.8

Q ss_pred             eEEEEeCCchHhHH--HHhcCCCCccEE-EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          60 KVLIVGGGDGGVAR--EVLKHPSVESAY-LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~G~G~~~~--~l~~~~~~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +|..||+|..+-..  .+....+..+++ .+|.+++..+.+.+.+.          +. ...|..+.+..  ...|+|+.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence            68899998764332  233443445554 67888887776655442          22 55777777765  46999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ..+.    ..      =.+.+.+.|+-|--+++.- ......+..+++.+..++.
T Consensus        69 ~tp~----~~------h~~~~~~~l~~g~~v~~EK-P~~~~~~~~~~l~~~a~~~  112 (120)
T PF01408_consen   69 ATPP----SS------HAEIAKKALEAGKHVLVEK-PLALTLEEAEELVEAAKEK  112 (120)
T ss_dssp             ESSG----GG------HHHHHHHHHHTTSEEEEES-SSSSSHHHHHHHHHHHHHH
T ss_pred             ecCC----cc------hHHHHHHHHHcCCEEEEEc-CCcCCHHHHHHHHHHHHHh
Confidence            7652    11      2244555666666666643 2234567777777766654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd05281 TDH Threonine dehydrogenase

Probab=86.95  E-value=10  Score=30.81  Aligned_cols=99  Identities=26%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .++.+||..|+|. |..+..+++..+...+++++-+++-.+.+++. ..      ..-+.....+....... ..+.+|+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~  234 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV  234 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence            3556888877643 34445566655533677777777666666552 11      00111111222211111 2347899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....          .......+.+.|+++|.++...
T Consensus       235 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         235 VLEMSG----------NPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             EEECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence            986542          1345677888999999988653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=86.92  E-value=7.1  Score=32.10  Aligned_cols=99  Identities=16%  Similarity=0.225  Sum_probs=55.6

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D  132 (197)
                      .++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. ..      ..-+.....+..+.+. . ....+|
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d  258 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVD  258 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCC
Confidence            345688887654 334444555655533388888888877777542 21      0011111122222122 1 235699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....     .     ...+..+.+.|+++|.++...
T Consensus       259 ~vld~vg-----~-----~~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         259 VVVEALG-----K-----PETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EEEEeCC-----C-----HHHHHHHHHHHhcCCEEEEEc
Confidence            9985432     1     125677888999999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=86.88  E-value=11  Score=30.66  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|..+|.|. |.....+++..+ .+|.++|..+..        ..       ..+.  ..+..+.++    ..|+|+
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d~~~~~--------~~-------~~~~--~~~l~ell~----~sDvv~  201 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYSTSGKN--------KN-------EEYE--RVSLEELLK----TSDIIS  201 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcC-CEEEEECCCccc--------cc-------cCce--eecHHHHhh----cCCEEE
Confidence            457899999875 433333444444 688888864210        00       1122  235555553    369999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ...|..... .+++..    +..+.||||.+|+=.
T Consensus       202 lh~Plt~~T-~~li~~----~~~~~Mk~~a~lIN~  231 (311)
T PRK08410        202 IHAPLNEKT-KNLIAY----KELKLLKDGAILINV  231 (311)
T ss_pred             EeCCCCchh-hcccCH----HHHHhCCCCeEEEEC
Confidence            988753332 234443    444577888777643

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=86.78  E-value=3.6  Score=32.78  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=24.6

Q ss_pred             CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcC
Q psy4592          57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ...+|+.+||| .|+.....+.+.+..+++.+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34699999998 56666555545466789999966

>PLN02702 L-idonate 5-dehydrogenase

Probab=86.75  E-value=6.9  Score=32.14  Aligned_cols=99  Identities=21%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE--EEcchHHHHh----hcC
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV--HVGDGFRFMS----EHQ  128 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~d~~~~~~----~~~  128 (197)
                      ..+.+||.+|+| .|..+..+++..+...+++++.++...+.+++. ..      ...+.+  ...+..+.+.    ...
T Consensus       180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~~  252 (364)
T PLN02702        180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GA------DEIVLVSTNIEDVESEVEEIQKAMG  252 (364)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEecCcccccHHHHHHHHhhhcC
Confidence            345689999764 233445566655544688899888887877663 21      001111  1122222221    113


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.+|+|+....     .     ...+..+.+.|+++|.++...
T Consensus       253 ~~~d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        253 GGIDVSFDCVG-----F-----NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCCCEEEECCC-----C-----HHHHHHHHHHHhcCCEEEEEc
Confidence            46898885431     1     235688889999999988654

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=86.74  E-value=0.89  Score=38.65  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             eEEEEeCCchHhHHHH----hc--CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCcee
Q psy4592          60 KVLIVGGGDGGVAREV----LK--HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFD  132 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l----~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D  132 (197)
                      +|..||+|+.+.+..+    +.  .....+++.+|++++.++............ .....++. ..|..+.+    ...|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal----~~AD   76 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE-LGAPLKIEATTDRREAL----DGAD   76 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHh----cCCC
Confidence            5889999995444322    21  233358999999998777554432111000 11224443 45654444    3479


Q ss_pred             EEEECCC
Q psy4592         133 VIITDSS  139 (197)
Q Consensus       133 ~I~~~~~  139 (197)
                      +|+...+
T Consensus        77 ~Vi~ai~   83 (423)
T cd05297          77 FVINTIQ   83 (423)
T ss_pred             EEEEeeE
Confidence            9998775

linked to 3D####ucture

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=86.73  E-value=12  Score=30.80  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc--chHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG--DGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~-~~~~~  131 (197)
                      .++.+||..|+|. |..+..+++..+...+++++.+++-.+.+++. ..      ..-+.....  +..+.+.. ..+.+
T Consensus       182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~  254 (365)
T cd05279         182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGV  254 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCC
Confidence            4567999987642 22334455555544588888888888877553 21      011111112  22222221 23568


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcC-CCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALR-PGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lk-pgG~l~~~~  171 (197)
                      |+|+....     .     ...+..+.+.|+ ++|.++...
T Consensus       255 d~vid~~g-----~-----~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         255 DYAFEVIG-----S-----ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             cEEEECCC-----C-----HHHHHHHHHHhccCCCEEEEEe
Confidence            99884321     1     346677888999 999988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=86.73  E-value=5  Score=32.42  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|+.+|.|.-+.. ...++..+ .++++++.+++..+.++.. .          .++.  +..+ +...-..+|+||
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~--~~~~-l~~~l~~aDiVI  215 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPF--HLSE-LAEEVGKIDIIF  215 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------Ceee--cHHH-HHHHhCCCCEEE
Confidence            4689999999853332 22333444 6999999998765555432 1          1221  1111 222234699999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...+.      .+    .-+.+.+.++|+++++-...
T Consensus       216 ~t~p~------~~----i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        216 NTIPA------LV----LTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             ECCCh------hh----hhHHHHHcCCCCcEEEEEcc
Confidence            86532      11    22455677888887764443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.67  E-value=4.4  Score=32.27  Aligned_cols=84  Identities=21%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             eEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          60 KVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +|..||+|.  |.++..+.+. + .+|+++|.+++.++.+++.-.          +.....+. +.    ....|+|+..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~----~~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SL----LKDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hH----hcCCCEEEEc
Confidence            578899885  3455555444 2 589999999988877755310          11111221 11    2357999987


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIV  167 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l  167 (197)
                      .+..     .  ..+.++++...++++..+
T Consensus        65 vp~~-----~--~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         65 LPIG-----L--LLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             CCHH-----H--HHHHHHHHHHhCCCCcEE
Confidence            7521     1  145667777777766444

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=86.56  E-value=2.4  Score=33.02  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=24.0

Q ss_pred             CCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCH
Q psy4592          58 PKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        58 ~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      ..+|+.+||| .|+.....+.+.+..+++.+|.|.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            3589999997 566555544445667999998653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG3924|consensus

Probab=86.54  E-value=2.2  Score=35.71  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh---cCCCC--CCCCCCCeEEEEcchHHH--Hh
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY---LPGMA--VGLSDPRLTVHVGDGFRF--MS  125 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~---~~~~~--~~~~~~~~~~~~~d~~~~--~~  125 (197)
                      +.........|+|+|-|.....++...+...-.|+|+...-.+.+..+   +....  .+.....++.++++...-  ..
T Consensus       188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            333456789999999999988877766556677899865544443322   11100  111234577777775431  11


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .-....++|++|......   .+  .--++++..-+++|-+++-
T Consensus       268 eI~~eatvi~vNN~~Fdp---~L--~lr~~eil~~ck~gtrIiS  306 (419)
T KOG3924|consen  268 EIQTEATVIFVNNVAFDP---EL--KLRSKEILQKCKDGTRIIS  306 (419)
T ss_pred             HHhhcceEEEEecccCCH---HH--HHhhHHHHhhCCCcceEec
Confidence            124578999998764322   11  1123477788899988875

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.33  E-value=9.4  Score=29.44  Aligned_cols=77  Identities=13%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .++.+|..|++.| ++.++++..  ...++..++.+++-++...+.+..     ...++.++.+|+.+.-      .   
T Consensus         8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T PRK05867          8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT-----SGGKVVPVCCDVSQHQQVTSMLDQVT   81 (253)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            4568999997554 444444321  126888888887766655444432     1235667777754321      1   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|.++.+..
T Consensus        82 ~~~g~id~lv~~ag   95 (253)
T PRK05867         82 AELGGIDIAVCNAG   95 (253)
T ss_pred             HHhCCCCEEEECCC
Confidence            11257899998864

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=86.27  E-value=13  Score=28.70  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .+++||..|+ +|+++..+++..  .+.+|+.++-+++..+...+.+..     ...++.++..|+.+.-      .   
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   82 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG-----QGLSAHALAFDVTDHDAVRAAIDAFE   82 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCceEEEEEccCCCHHHHHHHHHHHH
Confidence            3568998886 555666655421  225888888887665544444332     1234667777765321      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|.++.+...
T Consensus        83 ~~~~~~d~li~~ag~   97 (255)
T PRK07523         83 AEIGPIDILVNNAGM   97 (255)
T ss_pred             HhcCCCCEEEECCCC
Confidence            113468999987653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.26  E-value=5.8  Score=32.51  Aligned_cols=101  Identities=20%  Similarity=0.238  Sum_probs=59.1

Q ss_pred             CeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC----CC-CCC----CCCCeEEEEcchHHHHhhc
Q psy4592          59 KKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG----MA-VGL----SDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        59 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~----~~-~~~----~~~~~~~~~~d~~~~~~~~  127 (197)
                      ++|-.||+|+  .+++..++..  +.+|+..|.+++.++.+++.+..    .. .+.    ...++++. .|..+.+   
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av---   81 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV---   81 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh---
Confidence            6899999984  2344444444  37999999999877665442210    00 000    01233332 2333222   


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...|+|+-..+...     -....+++++-+.++|+.++..++
T Consensus        82 -~~aDlViEavpE~l-----~vK~~lf~~l~~~~~~~aIlaSnT  119 (321)
T PRK07066         82 -ADADFIQESAPERE-----ALKLELHERISRAAKPDAIIASST  119 (321)
T ss_pred             -cCCCEEEECCcCCH-----HHHHHHHHHHHHhCCCCeEEEECC
Confidence             45799997765211     123678899999999998666554

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.09  E-value=13  Score=28.21  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~--  126 (197)
                      ++++||..|++. .++..+.+..  ...+++++.-+++-.+.+.+....      ..++.++.+|..+.-      ..  
T Consensus         4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~   76 (238)
T PRK05786          4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK------YGNIHYVVGDVSSTESARNVIEKAA   76 (238)
T ss_pred             CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEECCCCCHHHHHHHHHHHH
Confidence            346899999854 4554444321  225888988887765544333321      125677777765321      11  


Q ss_pred             -cCCceeEEEECCCCCCCCC-ccc------------ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 -HQQEFDVIITDSSDPVGPA-ESL------------FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 -~~~~~D~I~~~~~~~~~~~-~~l------------~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       .-+..|.++.+........ ...            ..-.+++.+.+.++++|.+++.+
T Consensus        77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence             1245798888764322110 000            00123556666778888777765

>PRK15076 alpha-galactosidase; Provisional

Probab=86.04  E-value=12  Score=31.96  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             CeEEEEeCCc-hHhHH---HHh--cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCce
Q psy4592          59 KKVLIVGGGD-GGVAR---EVL--KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEF  131 (197)
Q Consensus        59 ~~vLdiG~G~-G~~~~---~l~--~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~  131 (197)
                      .+|..||+|+ |....   .++  ......+++.+|++++.++.+...+...... .....++. ..|..+.+.    ..
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~-~~~~~~i~~ttD~~eal~----dA   76 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAES-LGASAKITATTDRREALQ----GA   76 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhC----CC
Confidence            3788999998 53221   222  2334458999999998877544432211000 12235555 566444343    36


Q ss_pred             eEEEECCC
Q psy4592         132 DVIITDSS  139 (197)
Q Consensus       132 D~I~~~~~  139 (197)
                      |+|+...-
T Consensus        77 DfVv~ti~   84 (431)
T PRK15076         77 DYVINAIQ   84 (431)
T ss_pred             CEEeEeee
Confidence            88888653

>PRK08324 short chain dehydrogenase; Validated

Probab=86.01  E-value=20  Score=32.47  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             CCeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          58 PKKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      ++.||..|++. .++..+++   ..+ .+++.++.+++-.+.+.+.+..     . .++.++.+|+.+.      +..  
T Consensus       422 gk~vLVTGasg-gIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~-----~-~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        422 GKVALVTGAAG-GIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGG-----P-DRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCEEEEecCCC-HHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhc-----c-CcEEEEEecCCCHHHHHHHHHHHH
Confidence            46788888643 44444333   223 5899999998776655554432     1 3567777775432      111  


Q ss_pred             -cCCceeEEEECCCCCCCCC-cccc--------------cHHHHHHHHhhcCC---CcEEEEEc
Q psy4592         127 -HQQEFDVIITDSSDPVGPA-ESLF--------------QASYFELMSRALRP---GGIVCSQA  171 (197)
Q Consensus       127 -~~~~~D~I~~~~~~~~~~~-~~l~--------------~~~~~~~~~~~Lkp---gG~l~~~~  171 (197)
                       ..+..|+||.+........ ....              ...+++.+.+.+++   +|.+++.+
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence             1346899998764322110 0000              12345566666666   67777765

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=85.97  E-value=18  Score=30.63  Aligned_cols=105  Identities=16%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh----h-----c--
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----E-----H--  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~-----~--  127 (197)
                      .+|-.+|.|-=++..++.....+..++|+||++..++...+--           ..+..-+..+.+.    .     +  
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd   78 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD   78 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence            5888899887666666554434479999999999888765421           1121122121111    0     0  


Q ss_pred             ---CCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         128 ---QQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       128 ---~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                         -...|+++..-|.+....  +.+ +-....+.+.+.|++|-.+++.+..+
T Consensus        79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~  131 (436)
T COG0677          79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP  131 (436)
T ss_pred             hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence               126788888776555422  111 11456677889999999999987554

>PRK07677 short chain dehydrogenase; Provisional

Probab=85.94  E-value=11  Score=29.03  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=43.4

Q ss_pred             CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh---c
Q psy4592          59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE---H  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~---~  127 (197)
                      +++|..|++.| ++..+.+.  ..+.+++.++.+++..+.+.+.+..     ...++.++.+|..+.      +..   .
T Consensus         2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   75 (252)
T PRK07677          2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ-----FPGQVLTVQMDVRNPEDVQKMVEQIDEK   75 (252)
T ss_pred             CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            57888888654 44443332  1125888889887766555444432     123677777775431      111   1


Q ss_pred             CCceeEEEECCC
Q psy4592         128 QQEFDVIITDSS  139 (197)
Q Consensus       128 ~~~~D~I~~~~~  139 (197)
                      -++.|.++.+..
T Consensus        76 ~~~id~lI~~ag   87 (252)
T PRK07677         76 FGRIDALINNAA   87 (252)
T ss_pred             hCCccEEEECCC
Confidence            246899998763

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=85.91  E-value=2.1  Score=34.55  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=18.4

Q ss_pred             eEEEEeCC-chHhHHHHhcCCCCccEEEEEcC
Q psy4592          60 KVLIVGGG-DGGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        60 ~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      +||.+||| .|......+...+..+++.+|.|
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58899987 33333332223455788888843

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG0022|consensus

Probab=85.89  E-value=17  Score=29.87  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             CCCCeEEEEeCCchHhHHHH-hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREV-LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l-~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .++..|..+|+|.=+++... ++..+..+|.+||++++-.+.|++.-.-  ...+ |+ ++. ..+.+.+.. .+.-+|.
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT--e~iN-p~-d~~-~~i~evi~EmTdgGvDy  265 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT--EFIN-PK-DLK-KPIQEVIIEMTDGGVDY  265 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc--eecC-hh-hcc-ccHHHHHHHHhcCCceE
Confidence            45567788887764444333 2445668999999999999999886211  1112 22 221 135555544 3556776


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~  170 (197)
                      -+-..     .+     .+.++++....+.| |.-++.
T Consensus       266 sfEc~-----G~-----~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  266 SFECI-----GN-----VSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             EEEec-----CC-----HHHHHHHHHHhhcCCCeEEEE
Confidence            65322     11     45677777777888 765554

>PRK06949 short chain dehydrogenase; Provisional

Probab=85.81  E-value=14  Score=28.39  Aligned_cols=77  Identities=12%  Similarity=0.159  Sum_probs=45.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~---  125 (197)
                      .+++||..|+ +|.++..+++..  ...+++.+..+++-++.....+..     ...+++++.+|+.+.      +.   
T Consensus         8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (258)
T PRK06949          8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA-----EGGAAHVVSLDVTDYQSIKAAVAHAE   81 (258)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            4578888885 445665555421  225789999888776555444322     123567777775421      11   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ...++.|.|+.+..
T Consensus        82 ~~~~~~d~li~~ag   95 (258)
T PRK06949         82 TEAGTIDILVNNSG   95 (258)
T ss_pred             HhcCCCCEEEECCC
Confidence            11246899998765

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=85.68  E-value=12  Score=30.21  Aligned_cols=98  Identities=26%  Similarity=0.340  Sum_probs=55.9

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~  133 (197)
                      ++.+||..|+|. |..+..+++..+...+++++.+++..+.+++. ..      ..-+.....+..+.+..  ....+|+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV  235 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence            567888877643 34445566655533677888777777766552 11      00111111222222222  1346898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....          ....+..+.+.|+++|.++...
T Consensus       236 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        236 GLEMSG----------APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             EEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence            885331          1346678889999999988875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=85.59  E-value=21  Score=30.17  Aligned_cols=105  Identities=24%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCC--------CCCCeEEEEcchHHHHhhcC
Q psy4592          60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGL--------SDPRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~--------~~~~~~~~~~d~~~~~~~~~  128 (197)
                      +|-.||+|.=+...+  +++.  +.+|+++|.+++.++..++...... .++        ...++++ ..|..+.+    
T Consensus         2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~----   74 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAI----   74 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHH----
Confidence            577889886544433  3333  2589999999988876554211100 000        0112332 23433322    


Q ss_pred             CceeEEEECCCCCCCCCccc---ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGPAESL---FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l---~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...|+|+...+.+...+...   .-....+.+.+.+++|-.++..+
T Consensus        75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            34799998876544211110   01344566777888877666544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=85.55  E-value=2.4  Score=33.42  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=46.1

Q ss_pred             HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccH
Q psy4592          72 AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQA  151 (197)
Q Consensus        72 ~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~  151 (197)
                      +.++.+.+...+|+++|.++..++.|++. ..         +.-...+ .+.+    ..+|+|+...|...       ..
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~---------~~~~~~~-~~~~----~~~DlvvlavP~~~-------~~   59 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL-GI---------IDEASTD-IEAV----EDADLVVLAVPVSA-------IE   59 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TS---------SSEEESH-HHHG----GCCSEEEE-S-HHH-------HH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CC---------eeeccCC-HhHh----cCCCEEEEcCCHHH-------HH
Confidence            45666776668999999999998888653 11         1111222 2222    34799998775211       26


Q ss_pred             HHHHHHHhhcCCCcEEEE
Q psy4592         152 SYFELMSRALRPGGIVCS  169 (197)
Q Consensus       152 ~~~~~~~~~LkpgG~l~~  169 (197)
                      ++++++...+++|+.+.=
T Consensus        60 ~~l~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen   60 DVLEEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHCGS-TTSEEEE
T ss_pred             HHHHHhhhhcCCCcEEEE
Confidence            788888888888766654

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=85.47  E-value=19  Score=29.50  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CeEEEEeCCchHhHH-HHhcCCCCccEEEEEcCHHHH-----HHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCce
Q psy4592          59 KKVLIVGGGDGGVAR-EVLKHPSVESAYLVEIDNRVI-----EVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEF  131 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~-~l~~~~~~~~v~~ve~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  131 (197)
                      .+|..||+|.=+.+. .++...+...++.+|++++..     +..... .     ......++.. .|..+ +    ...
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~-~-----~~~~~~~I~~~~d~~~-l----~~a   75 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN-V-----IAGSNSKVIGTNNYED-I----AGS   75 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh-h-----ccCCCeEEEECCCHHH-h----CCC
Confidence            589999998733333 222333334699999999853     222211 1     1122445654 66432 2    347


Q ss_pred             eEEEECCCCCCCCCc--------ccc------cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         132 DVIITDSSDPVGPAE--------SLF------QASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       132 D~I~~~~~~~~~~~~--------~l~------~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |+|+...-.+..+..        .+.      -.++.+.+.+.. |+|.+++.++.
T Consensus        76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP  130 (321)
T PTZ00082         76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNP  130 (321)
T ss_pred             CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence            999985533221111        000      123455555554 88877776543

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=85.47  E-value=13  Score=29.69  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      ..+.++|..|.+  .|.....+++..+ .+++.++.+++-.+.++.. ..      ...+.....+..+.+..  ....+
T Consensus       165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
T cd08266         165 RPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKLERAKEL-GA------DYVIDYRKEDFVREVRELTGKRGV  236 (342)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CeEEecCChHHHHHHHHHhCCCCC
Confidence            345789999985  3444455555544 6788888888777766442 11      11121111122222221  13468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++....           ...+..+.+.|+++|.++...
T Consensus       237 d~~i~~~g-----------~~~~~~~~~~l~~~G~~v~~~  265 (342)
T cd08266         237 DVVVEHVG-----------AATWEKSLKSLARGGRLVTCG  265 (342)
T ss_pred             cEEEECCc-----------HHHHHHHHHHhhcCCEEEEEe
Confidence            99986542           234577788999999988754

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=85.41  E-value=17  Score=30.19  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHH-HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRV-IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .+.+||..|+|. |..+..+++..+ .++++++.+++. .+.+++ +..        ...+...+... +......+|+|
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~~~~~~~~a~~-lGa--------~~~i~~~~~~~-v~~~~~~~D~v  246 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFG-LRVTVISRSSEKEREAIDR-LGA--------DSFLVTTDSQK-MKEAVGTMDFI  246 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcC-CeEEEEeCChHHhHHHHHh-CCC--------cEEEcCcCHHH-HHHhhCCCcEE
Confidence            457899888752 334445566555 578888876543 455543 211        11110111111 22212358988


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +-...     .     ...+..+.+.++++|.++...
T Consensus       247 id~~G-----~-----~~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        247 IDTVS-----A-----EHALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             EECCC-----c-----HHHHHHHHHhhcCCCEEEEEc
Confidence            85331     1     335678889999999998764

>PRK07576 short chain dehydrogenase; Provisional

Probab=85.40  E-value=14  Score=28.75  Aligned_cols=77  Identities=14%  Similarity=0.252  Sum_probs=43.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      ..+++|..|. +|+++..+.+.  ....+|+.++.+++-++...+.+..     ...++.++..|+.+.      +..  
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~i~~~~~~~~   81 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ-----AGPEGLGVSADVRDYAAVEAAFAQIA   81 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----hCCceEEEECCCCCHHHHHHHHHHHH
Confidence            3468888886 44555554432  1236899999887765544333322     123456677766431      111  


Q ss_pred             -cCCceeEEEECCC
Q psy4592         127 -HQQEFDVIITDSS  139 (197)
Q Consensus       127 -~~~~~D~I~~~~~  139 (197)
                       ..++.|+++.+..
T Consensus        82 ~~~~~iD~vi~~ag   95 (264)
T PRK07576         82 DEFGPIDVLVSGAA   95 (264)
T ss_pred             HHcCCCCEEEECCC
Confidence             1246899998763

>KOG0023|consensus

Probab=85.20  E-value=5.7  Score=32.57  Aligned_cols=98  Identities=21%  Similarity=0.117  Sum_probs=61.8

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~D~  133 (197)
                      .++++|-.+|.| .|.++...++..+ .++++|+-+..--+.+-+.+..        ..-+... | .+.+..-.+..|.
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG-~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d-~d~~~~~~~~~dg  249 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMG-MRVTVISTSSKKKEEAIKSLGA--------DVFVDSTED-PDIMKAIMKTTDG  249 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhC-cEEEEEeCCchhHHHHHHhcCc--------ceeEEecCC-HHHHHHHHHhhcC
Confidence            356788888864 6788888888876 7999999987555555554432        1111111 2 2233333355677


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.....-        .+..++.+.+.||++|.+++..
T Consensus       250 ~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  250 GIDTVSNL--------AEHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             cceeeeec--------cccchHHHHHHhhcCCEEEEEe
Confidence            76544211        1335577889999999999875

>PRK07454 short chain dehydrogenase; Provisional

Probab=85.07  E-value=15  Score=28.00  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=44.7

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------E  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~  126 (197)
                      .+++|..|+ +|.++..+.+..  .+.+|+.++.+++-.+...+....     ...++.++.+|+.+.-.         .
T Consensus         6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (241)
T PRK07454          6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAELLE   79 (241)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            457888885 555655555421  225899999887655444443322     12467788888653211         1


Q ss_pred             cCCceeEEEECCC
Q psy4592         127 HQQEFDVIITDSS  139 (197)
Q Consensus       127 ~~~~~D~I~~~~~  139 (197)
                      .-++.|.++.+.-
T Consensus        80 ~~~~id~lv~~ag   92 (241)
T PRK07454         80 QFGCPDVLINNAG   92 (241)
T ss_pred             HcCCCCEEEECCC
Confidence            1246899998764

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=85.05  E-value=16  Score=28.75  Aligned_cols=96  Identities=18%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      .++..||..|+  +.|..+..+++..+ ..+++++.+++..+.+++. ..      ..-+.....+..+.+..  ....+
T Consensus       138 ~~~~~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~~  209 (323)
T cd08241         138 QPGETVLVLGAAGGVGLAAVQLAKALG-ARVIAAASSEEKLALARAL-GA------DHVIDYRDPDLRERVKALTGGRGV  209 (323)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHc-CC------ceeeecCCccHHHHHHHHcCCCCc
Confidence            45679999998  34445555555544 6788999888877777542 11      11111122233222222  13468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+++....           ...+..+.+.++++|.++..
T Consensus       210 d~v~~~~g-----------~~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         210 DVVYDPVG-----------GDVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             EEEEECcc-----------HHHHHHHHHhhccCCEEEEE
Confidence            98885431           12445677888899987754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>KOG1201|consensus

Probab=85.04  E-value=14  Score=29.92  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=45.7

Q ss_pred             CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH---H------
Q psy4592          57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR---F------  123 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~---~------  123 (197)
                      .++.||.-|+|.| +++++    ++++  +.+...|++++..+...+.+.+.     + +++...+|..+   .      
T Consensus        37 ~g~~vLITGgg~G-lGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~-----g-~~~~y~cdis~~eei~~~a~~  107 (300)
T KOG1201|consen   37 SGEIVLITGGGSG-LGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKI-----G-EAKAYTCDISDREEIYRLAKK  107 (300)
T ss_pred             cCCEEEEeCCCch-HHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhc-----C-ceeEEEecCCCHHHHHHHHHH
Confidence            3568999998887 44444    4443  58889999987665554444431     1 45555555432   1      


Q ss_pred             HhhcCCceeEEEECCC
Q psy4592         124 MSEHQQEFDVIITDSS  139 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~  139 (197)
                      +...-+..|++|.|.-
T Consensus       108 Vk~e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  108 VKKEVGDVDILVNNAG  123 (300)
T ss_pred             HHHhcCCceEEEeccc
Confidence            1223568999998864

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.04  E-value=10  Score=31.22  Aligned_cols=89  Identities=15%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|..||+|. |......++..+ .+|.++|.++.-.. ... .          ...  ..+..+.+.    ..|+|+
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~-~~~-~----------~~~--~~~l~ell~----~aDiV~  209 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFG-MRILYYSRTRKPEA-EKE-L----------GAE--YRPLEELLR----ESDFVS  209 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CEEEEECCCCChhh-HHH-c----------CCE--ecCHHHHHh----hCCEEE
Confidence            457999999976 332222333344 58999998654211 111 0          112  235555443    379999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ...|...... +++.    ++....+|||.+|+-
T Consensus       210 l~lP~t~~T~-~~i~----~~~~~~mk~ga~lIN  238 (333)
T PRK13243        210 LHVPLTKETY-HMIN----EERLKLMKPTAILVN  238 (333)
T ss_pred             EeCCCChHHh-hccC----HHHHhcCCCCeEEEE
Confidence            9887533221 2222    356667888776654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=84.97  E-value=10  Score=29.03  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             CeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---------hhc
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---------SEH  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~  127 (197)
                      +++|..|+ +|.++..+.+..  ...++++++.+++..+.....+..     ...++.++.+|..+.-         ...
T Consensus         2 ~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   75 (255)
T TIGR01963         2 KTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD-----AGGSVIYLVADVTKEDEIADMIAAAAAE   75 (255)
T ss_pred             CEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            46777874 556666655431  125899999887665554443321     1235777777765421         111


Q ss_pred             CCceeEEEECCC
Q psy4592         128 QQEFDVIITDSS  139 (197)
Q Consensus       128 ~~~~D~I~~~~~  139 (197)
                      ....|.|+.+..
T Consensus        76 ~~~~d~vi~~a~   87 (255)
T TIGR01963        76 FGGLDILVNNAG   87 (255)
T ss_pred             cCCCCEEEECCC
Confidence            346899998764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=84.92  E-value=18  Score=29.75  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+| .|..+..+++..+...+++++.++...+.++. +..      ..-+.....+..+.+..  ....+|
T Consensus       181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~------~~vv~~~~~~~~~~l~~~~~~~~vd  253 (363)
T cd08279         181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA------THTVNASEDDAVEAVRDLTDGRGAD  253 (363)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC------eEEeCCCCccHHHHHHHHcCCCCCC
Confidence            455789998764 34455556666553358888888887777753 221      00111111122222222  135699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++....     .     ...+..+.+.|+++|.++..
T Consensus       254 ~vld~~~-----~-----~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         254 YAFEAVG-----R-----AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             EEEEcCC-----C-----hHHHHHHHHHhhcCCeEEEE
Confidence            8885431     0     24567888999999998765

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.79  E-value=6.9  Score=34.50  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~  133 (197)
                      .+++.+|+|.=  +..+++.  ..+..++.+|.|++.++.+++.           ....+.+|+.+.  +.. .-+++|.
T Consensus       418 ~hiiI~G~G~~--G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~  484 (558)
T PRK10669        418 NHALLVGYGRV--GSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW  484 (558)
T ss_pred             CCEEEECCChH--HHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence            58888888863  3333331  1126899999999988888652           366888887753  222 2458898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++........       ...+-.+.+..+|+-.++....
T Consensus       485 viv~~~~~~~-------~~~iv~~~~~~~~~~~iiar~~  516 (558)
T PRK10669        485 LLLTIPNGYE-------AGEIVASAREKRPDIEIIARAH  516 (558)
T ss_pred             EEEEcCChHH-------HHHHHHHHHHHCCCCeEEEEEC
Confidence            8765532111       1123334455678888777653

>PRK08267 short chain dehydrogenase; Provisional

Probab=84.55  E-value=17  Score=28.14  Aligned_cols=74  Identities=14%  Similarity=0.097  Sum_probs=44.7

Q ss_pred             CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh---c
Q psy4592          59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE---H  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~---~  127 (197)
                      +++|..|++. +++..+.+.  ....+++.++.+++.++...+...       ..++.++.+|+.+.-      ..   .
T Consensus         2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~   73 (260)
T PRK08267          2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAAA   73 (260)
T ss_pred             cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4688888754 455544432  112688899988876665554432       235777777766422      11   1


Q ss_pred             -CCceeEEEECCCC
Q psy4592         128 -QQEFDVIITDSSD  140 (197)
Q Consensus       128 -~~~~D~I~~~~~~  140 (197)
                       .++.|+++.+...
T Consensus        74 ~~~~id~vi~~ag~   87 (260)
T PRK08267         74 TGGRLDVLFNNAGI   87 (260)
T ss_pred             cCCCCCEEEECCCC
Confidence             3578999987643

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=84.50  E-value=3.4  Score=30.54  Aligned_cols=32  Identities=34%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             eEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592          60 KVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        60 ~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      +|+.+|||. |+.....+...+..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999984 54333333333556899999764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=84.44  E-value=12  Score=29.89  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=52.8

Q ss_pred             eEEEEeCCchHhHH--HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE---EEcchHHHHhhcCCceeEE
Q psy4592          60 KVLIVGGGDGGVAR--EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV---HVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~~~~--~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~D~I  134 (197)
                      +|+.+|+|.-+...  .+.+. + ..|+.++.+++.++..++.--.. .  .. ....   ...|.    .. .+.+|+|
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~g~~~-~--~~-~~~~~~~~~~~~----~~-~~~~d~v   70 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-G-HDVTLVARRGAHLDALNENGLRL-E--DG-EITVPVLAADDP----AE-LGPQDLV   70 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHHcCCcc-c--CC-ceeecccCCCCh----hH-cCCCCEE
Confidence            68899998644332  23333 2 68999998777766555431100 0  01 1110   01121    11 2578999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +......     .  ....++.+...+.++..+++..
T Consensus        71 ila~k~~-----~--~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         71 ILAVKAY-----Q--LPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             EEecccc-----c--HHHHHHHHhhhcCCCCEEEEec
Confidence            9876421     1  2667888888888877666543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=84.32  E-value=4  Score=33.01  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=53.8

Q ss_pred             CeEEEEeCCc-h-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhh--cCCCCCCCCCCCeEEE--EcchHHHHhhcCCcee
Q psy4592          59 KKVLIVGGGD-G-GVAREVLKHPSVESAYLVEIDNRVIEVSKKY--LPGMAVGLSDPRLTVH--VGDGFRFMSEHQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~--~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~D  132 (197)
                      .+|+.+|+|. | .++..|.+.+  ..|+.++-+++-++..++.  +....   ......+.  ..+     +...+.||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence            4799999984 3 3444455443  6899999887666655542  11100   01111111  111     11235799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+...-.+     +  +.+.++.+...+.++..+++-
T Consensus        73 ~viv~vK~~-----~--~~~al~~l~~~l~~~t~vv~l  103 (305)
T PRK05708         73 RLLLACKAY-----D--AEPAVASLAHRLAPGAELLLL  103 (305)
T ss_pred             EEEEECCHH-----h--HHHHHHHHHhhCCCCCEEEEE
Confidence            998765211     1  266788899999999876543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=84.10  E-value=14  Score=30.97  Aligned_cols=95  Identities=13%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH-HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS-KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      +||.++-..|+++..++...+ .   .+ .|.-+.+.+ ++|+..  +++....+++....  +   ...+.+|+|+.-.
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~-~---~~-~ds~~~~~~~~~n~~~--n~~~~~~~~~~~~~--~---~~~~~~d~vl~~~  114 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKP-Y---SI-GDSYISELATRENLRL--NGIDESSVKFLDST--A---DYPQQPGVVLIKV  114 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCC-C---ee-ehHHHHHHHHHHHHHH--cCCCcccceeeccc--c---cccCCCCEEEEEe
Confidence            899999999999999885433 2   22 333344433 345443  22222335554332  2   1235699999887


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |....     .-+..+..+.++|.||+.++.-.
T Consensus       115 PK~~~-----~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        115 PKTLA-----LLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             CCCHH-----HHHHHHHHHHhhCCCCCEEEEEE
Confidence            63221     12567889999999999977543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=84.01  E-value=20  Score=29.07  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHH-HHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVI-EVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  131 (197)
                      .+.+|+.+|+|.  ++..++   ...+...++.++.+++-. +++++ +.       .   .... .|..+.    ...+
T Consensus       177 ~~~~V~ViGaG~--iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g-------~---~~~~~~~~~~~----l~~a  239 (311)
T cd05213         177 KGKKVLVIGAGE--MGELAAKHLAAKGVAEITIANRTYERAEELAKE-LG-------G---NAVPLDELLEL----LNEA  239 (311)
T ss_pred             cCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cC-------C---eEEeHHHHHHH----HhcC
Confidence            467999999864  333322   223346899999998654 45544 22       1   1221 122222    2458


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |+|+...+.+..       ...++.+.+..+.++.+++-...
T Consensus       240 DvVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         240 DVVISATGAPHY-------AKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             CEEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEeCC
Confidence            999987653222       23334444333346778877644

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.99  E-value=3.7  Score=34.09  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      ..+||.+|||. |+.....+...+..+++.+|-+.
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35999999984 44333333344567888888654

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.90  E-value=15  Score=29.59  Aligned_cols=98  Identities=19%  Similarity=0.286  Sum_probs=59.6

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      ..+.+||..|++  .|..+..+++..+ .+++++.-+++-.+.+++ +..      ..-+.....+..+.+..  ....+
T Consensus       164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v  235 (341)
T cd08297         164 KPGDWVVISGAGGGLGHLGVQYAKAMG-LRVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA  235 (341)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence            445799999986  4556666777665 588899988877776643 221      00111111122222222  13569


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+..          ....+..+.+.|+++|.++...
T Consensus       236 d~vl~~~~----------~~~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         236 HAVVVTAV----------SAAAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             CEEEEcCC----------chHHHHHHHHHhhcCCEEEEec
Confidence            99985331          1345677889999999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=83.86  E-value=4.9  Score=29.51  Aligned_cols=90  Identities=20%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHH-HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNR-VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.++|..||.|+=+.+.++-.+-....|+...-... -.+.|++.         .    |...+..+...    ..|+|+
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~---------G----f~v~~~~eAv~----~aDvV~   65 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD---------G----FEVMSVAEAVK----KADVVM   65 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT---------T-----ECCEHHHHHH----C-SEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC---------C----CeeccHHHHHh----hCCEEE
Confidence            357999999997665555443323356665555443 66666652         1    22245555443    489999


Q ss_pred             ECCCCCCCCCcccccHHHH-HHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYF-ELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~-~~~~~~LkpgG~l~~~  170 (197)
                      +-.|+     ..  ..+.+ +++...|+||-.+++.
T Consensus        66 ~L~PD-----~~--q~~vy~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   66 LLLPD-----EV--QPEVYEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             E-S-H-----HH--HHHHHHHHHHHHS-TT-EEEES
T ss_pred             EeCCh-----HH--HHHHHHHHHHhhCCCCCEEEeC
Confidence            77642     11  13444 8889999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=83.67  E-value=14  Score=29.95  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592          57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I  134 (197)
                      ++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. ..     . .-+.....+..+.+. ...+.+|++
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~~~d~v  247 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA-----D-VVVNGSDPDAAKRIIKAAGGGVDAV  247 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC-----c-EEecCCCccHHHHHHHHhCCCCcEE
Confidence            45788888764 233444455655544788899888888777552 21     0 001111111111122 222368999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....     .     ...+..+.+.|+++|.++..
T Consensus       248 id~~g-----~-----~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         248 IDFVN-----N-----SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             EECCC-----C-----HHHHHHHHHHhhcCCeEEEE
Confidence            84331     0     34578889999999998864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=83.66  E-value=16  Score=28.37  Aligned_cols=78  Identities=13%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      ..+++|..|++.| ++.++++.  ....+++.++-+++-++.+.+.+..     ...++.++.+|+.+.-.         
T Consensus         9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (265)
T PRK07097          9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE-----LGIEAHGYVCDVTDEDGVQAMVSQIE   82 (265)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence            4468888888664 44443331  1125788888877665554444332     12357777777653221         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...++.|.++.+...
T Consensus        83 ~~~~~id~li~~ag~   97 (265)
T PRK07097         83 KEVGVIDILVNNAGI   97 (265)
T ss_pred             HhCCCCCEEEECCCC
Confidence            112568999988753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.63  E-value=23  Score=30.03  Aligned_cols=72  Identities=32%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~  131 (197)
                      ..++++.+|+|.=  +..+++.  .....++.+|.+++.++.+++..         ..+.++.+|+.+.  +.. .-.++
T Consensus       230 ~~~~iiIiG~G~~--g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        230 PVKRVMIVGGGNI--GYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCEEEEECCCHH--HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence            3578999999753  3333321  12368999999999888776643         2456788887532  222 34578


Q ss_pred             eEEEECCC
Q psy4592         132 DVIITDSS  139 (197)
Q Consensus       132 D~I~~~~~  139 (197)
                      |.|++...
T Consensus       299 ~~vi~~~~  306 (453)
T PRK09496        299 DAFIALTN  306 (453)
T ss_pred             CEEEECCC
Confidence            98887654

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=83.63  E-value=16  Score=29.89  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch----HHHHhhc-CCc
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG----FRFMSEH-QQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~-~~~  130 (197)
                      .+.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. ..     . .-+.....+.    ....... ...
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~vi~~~~~~~~~~~~~i~~~~~~~~  249 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA-----D-ATIDIDELPDPQRRAIVRDITGGRG  249 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----C-eEEcCcccccHHHHHHHHHHhCCCC
Confidence            567899987642 22334455555533889999888877777542 21     0 0111111111    1111211 346


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+....     .     ...+....+.|+++|.++...
T Consensus       250 ~d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         250 ADVVIEASG-----H-----PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CcEEEECCC-----C-----hHHHHHHHHHhccCCEEEEEc
Confidence            999885431     1     235677889999999998654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=83.45  E-value=18  Score=29.16  Aligned_cols=104  Identities=18%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             EEEeCCc-hHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEEEECC
Q psy4592          62 LIVGGGD-GGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        62 LdiG~G~-G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      ..||+|. |....+.+...+. .+++.+|++++.++-....+......+  ...++.. .|. +.+    ...|+|+...
T Consensus         2 ~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~--~~~~i~~~~~~-~~l----~~aDiVIita   74 (300)
T cd00300           2 TIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL--ATGTIVRGGDY-ADA----ADADIVVITA   74 (300)
T ss_pred             EEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc--CCCeEEECCCH-HHh----CCCCEEEEcC
Confidence            4678875 4333333323232 479999998876553333222211111  1234443 442 222    4479999866


Q ss_pred             CCCCCCC---cccc--c----HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         139 SDPVGPA---ESLF--Q----ASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       139 ~~~~~~~---~~l~--~----~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      -.+..+.   ..+.  +    .++.+.+.+. .|+|.+++.++.
T Consensus        75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP  117 (300)
T cd00300          75 GAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNP  117 (300)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCh
Confidence            5433221   1111  1    2233344443 499998886643

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=83.42  E-value=6.6  Score=30.17  Aligned_cols=78  Identities=14%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH--------H---H
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF--------R---F  123 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~--------~---~  123 (197)
                      ..++||..|+ +|.++..+++..  .+.++++++.+++-.+...+.+...    ...++.++..|+.        +   .
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~   85 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT   85 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence            4568888886 555665544321  2268899998876655444433321    1234556555542        1   1


Q ss_pred             HhhcCCceeEEEECCC
Q psy4592         124 MSEHQQEFDVIITDSS  139 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~  139 (197)
                      +....++.|.|+.+..
T Consensus        86 ~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         86 IEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHhCCCCEEEECCc
Confidence            2222357899998764

>PLN02928 oxidoreductase family protein

Probab=83.30  E-value=21  Score=29.58  Aligned_cols=104  Identities=14%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .+++|..+|.|. |......++..+ .+|++++.+..-.......++... ........  ...+..+.+.    ..|+|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~----~aDiV  230 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFG-VKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG----EADIV  230 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCC-CEEEEECCCCChhhhhhhccccccccccccccC--cccCHHHHHh----hCCEE
Confidence            457999999986 433333444444 689998875321111000000000 00000001  1234444443    47999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...|..... .+++.    ++..+.||||.+|+ |+..
T Consensus       231 vl~lPlt~~T-~~li~----~~~l~~Mk~ga~lI-NvaR  263 (347)
T PLN02928        231 VLCCTLTKET-AGIVN----DEFLSSMKKGALLV-NIAR  263 (347)
T ss_pred             EECCCCChHh-hcccC----HHHHhcCCCCeEEE-ECCC
Confidence            9988754332 23333    34556778876554 5433

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=83.30  E-value=15  Score=28.78  Aligned_cols=97  Identities=19%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      .++.+||..|+  +.|..+..+++..+ ..++++..+++..+.+++ +..      ..-+.....+..+.+..  ....+
T Consensus       135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~~~~~  206 (320)
T cd05286         135 KPGDTVLVHAAAGGVGLLLTQWAKALG-ATVIGTVSSEEKAELARA-AGA------DHVINYRDEDFVERVREITGGRGV  206 (320)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH-CCC------CEEEeCCchhHHHHHHHHcCCCCe
Confidence            35679999995  35555566666655 678888888888777754 221      00011111122222222  13469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++....           ......+.+.|+++|.++...
T Consensus       207 d~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         207 DVVYDGVG-----------KDTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             eEEEECCC-----------cHhHHHHHHhhccCcEEEEEe
Confidence            99985332           124466788899999888653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.27  E-value=2.9  Score=34.98  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=23.0

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ...+|+.+|||. |......+...+..+++.+|-+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            346899999974 5444443334455789999987

>PRK06194 hypothetical protein; Provisional

Probab=83.25  E-value=20  Score=28.12  Aligned_cols=77  Identities=9%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--h-------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--E-------  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~-------  126 (197)
                      ++++|..|++ |+++..+++.  ..+.+++.++.+++.++...+.+..     ...++.++.+|+.+.-.  .       
T Consensus         6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~   79 (287)
T PRK06194          6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAALE   79 (287)
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678888765 4455554432  1126888999887665544333321     12357778888653211  1       


Q ss_pred             cCCceeEEEECCCC
Q psy4592         127 HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ~~~~~D~I~~~~~~  140 (197)
                      ..++.|+|+.+...
T Consensus        80 ~~g~id~vi~~Ag~   93 (287)
T PRK06194         80 RFGAVHLLFNNAGV   93 (287)
T ss_pred             HcCCCCEEEECCCC
Confidence            12468999998754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=83.23  E-value=18  Score=27.53  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------E  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~  126 (197)
                      +++||..|++ |.++..+.+..  .+.+++++.-+++-.....+.+..     ...++.++.+|..+.-.         .
T Consensus         6 ~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (251)
T PRK12826          6 GRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-----AGGKARARQVDVRDRAALKAAVAAGVE   79 (251)
T ss_pred             CCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4589988864 45555544321  125788888886554444333322     22457788877654211         1


Q ss_pred             cCCceeEEEECCCC
Q psy4592         127 HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ~~~~~D~I~~~~~~  140 (197)
                      ..+++|.|+.+...
T Consensus        80 ~~~~~d~vi~~ag~   93 (251)
T PRK12826         80 DFGRLDILVANAGI   93 (251)
T ss_pred             HhCCCCEEEECCCC
Confidence            12468999988643

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=83.19  E-value=3.7  Score=31.03  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ..+||.+|||. |......+...+..+++.+|.+
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35999999875 3322222223456789999865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=83.07  E-value=17  Score=29.32  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=55.7

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCcc-EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCce
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVES-AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~  131 (197)
                      .++.+||..|+| .|..+..+++..+ .+ ++++.-+++..+.+++. ..      ..-+.....+..+.+. . ....+
T Consensus       164 ~~g~~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~v  235 (343)
T cd08235         164 KPGDTVLVIGAGPIGLLHAMLAKASG-ARKVIVSDLNEFRLEFAKKL-GA------DYTIDAAEEDLVEKVRELTDGRGA  235 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh-CC------cEEecCCccCHHHHHHHHhCCcCC
Confidence            456789999864 3444455555544 45 88888888777766542 21      0001111112212121 1 23458


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+....          ....+..+.+.|+++|.++...
T Consensus       236 d~vld~~~----------~~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         236 DVVIVATG----------SPEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             CEEEECCC----------ChHHHHHHHHHhhcCCEEEEEe
Confidence            99985432          0346678889999999988754

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.97  E-value=4.3  Score=31.09  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID   90 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~   90 (197)
                      ...+|+.+|||. |+.....+...+..+++.+|.|
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            345999999984 4433333333355789999987

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=82.91  E-value=10  Score=24.47  Aligned_cols=87  Identities=22%  Similarity=0.245  Sum_probs=48.6

Q ss_pred             eEEEEeCCchHhH--HHHhcCC-CCccEEEE-EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          60 KVLIVGGGDGGVA--REVLKHP-SVESAYLV-EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        60 ~vLdiG~G~G~~~--~~l~~~~-~~~~v~~v-e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +|..||+|.=+.+  ..+.+.. ...+++.+ +.+++-.+..++.++          +.+...+..+..+.    .|+|+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----advvi   66 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQE----ADVVI   66 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHHH----TSEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhcc----CCEEE
Confidence            3566777653322  2233332 23577745 999988877766542          33444455555543    79999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      ...+     +..+  .+.++++ ..+.++..++
T Consensus        67 lav~-----p~~~--~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   67 LAVK-----PQQL--PEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             E-S------GGGH--HHHHHHH-HHHHTTSEEE
T ss_pred             EEEC-----HHHH--HHHHHHH-hhccCCCEEE
Confidence            8763     2221  5677777 5666666655

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=82.80  E-value=14  Score=25.92  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             CCCeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          57 NPKKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++||.+|+|.-+  ....+... +..+++.+.-+.+-.+...+.+.       ..++++..-+  + +.....++|+|
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~--~-~~~~~~~~Div   79 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLE--D-LEEALQEADIV   79 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGG--G-HCHHHHTESEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHH--H-HHHHHhhCCeE
Confidence            56799999996432  22333344 44679999988765554444332       2345555433  2 11112469999


Q ss_pred             EECCCCCC
Q psy4592         135 ITDSSDPV  142 (197)
Q Consensus       135 ~~~~~~~~  142 (197)
                      +...+...
T Consensus        80 I~aT~~~~   87 (135)
T PF01488_consen   80 INATPSGM   87 (135)
T ss_dssp             EE-SSTTS
T ss_pred             EEecCCCC
Confidence            98876433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1198|consensus

Probab=82.73  E-value=11  Score=31.31  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             CCCCeEEEEeCCch--HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCcee
Q psy4592          56 PNPKKVLIVGGGDG--GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G--~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D  132 (197)
                      ..++.||.+|.++|  .++..+++... ...+..--+++-++++++.=.       ..-+++...|..+..... ...||
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA-------d~vvdy~~~~~~e~~kk~~~~~~D  227 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA-------DEVVDYKDENVVELIKKYTGKGVD  227 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCC-------cEeecCCCHHHHHHHHhhcCCCcc
Confidence            45679999998766  45566777765 455555667788888877521       123444445555544432 56899


Q ss_pred             EEEECCC
Q psy4592         133 VIITDSS  139 (197)
Q Consensus       133 ~I~~~~~  139 (197)
                      +|+-...
T Consensus       228 vVlD~vg  234 (347)
T KOG1198|consen  228 VVLDCVG  234 (347)
T ss_pred             EEEECCC
Confidence            9997664

>PRK06436 glycerate dehydrogenase; Provisional

Probab=82.66  E-value=23  Score=28.76  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=48.5

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|..+|+|. |.-...+++..+ .++.+++.+..-        .         .......+..+.+.    ..|+|+
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG-~~V~~~~r~~~~--------~---------~~~~~~~~l~ell~----~aDiv~  178 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFG-MNIYAYTRSYVN--------D---------GISSIYMEPEDIMK----KSDFVL  178 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CEEEEECCCCcc--------c---------CcccccCCHHHHHh----hCCEEE
Confidence            457999999985 433233344444 688898865210        0         11111235445443    479999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ...|...... +++.    +.....||||. +++|+..
T Consensus       179 ~~lp~t~~T~-~li~----~~~l~~mk~ga-~lIN~sR  210 (303)
T PRK06436        179 ISLPLTDETR-GMIN----SKMLSLFRKGL-AIINVAR  210 (303)
T ss_pred             ECCCCCchhh-cCcC----HHHHhcCCCCe-EEEECCC
Confidence            9887543322 2222    34555788865 5555533

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=82.63  E-value=13  Score=32.22  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|+.+|+|.  ++..++   +..+ .+|+++|.+|.....+...           ..++  .+..+.+    ...|+
T Consensus       253 aGKtVgVIG~G~--IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~--~~leell----~~ADI  312 (476)
T PTZ00075        253 AGKTVVVCGYGD--VGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQV--VTLEDVV----ETADI  312 (476)
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Ccee--ccHHHHH----hcCCE
Confidence            568999999996  333333   3333 6899999998754333221           1222  2333433    35899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+....     ..++++    .+..+.||||++++-.
T Consensus       313 VI~atG-----t~~iI~----~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        313 FVTATG-----NKDIIT----LEHMRRMKNNAIVGNI  340 (476)
T ss_pred             EEECCC-----cccccC----HHHHhccCCCcEEEEc
Confidence            997642     222222    4667789999998854

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=82.61  E-value=18  Score=29.17  Aligned_cols=98  Identities=14%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             eEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCC-CCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          60 KVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLS-DPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~-~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +|..||+|.=+  ++..+++. + ..++.++.+++.++..++......  .... ..++.. ..|..+..    +..|+|
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~D~v   75 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-G-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----ADADLI   75 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----hCCCEE
Confidence            68899987432  22333333 2 578999999888776655321100  0000 012322 23433322    357999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +...+..     .  .++.++.+...++++..++...
T Consensus        76 i~~v~~~-----~--~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         76 LVAVPSQ-----A--LREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             EEeCCHH-----H--HHHHHHHHHhhcCCCCEEEEEe
Confidence            9877531     1  2667788888888877665443

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=82.54  E-value=19  Score=29.89  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             CCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc---chHHHHhh-c-CC
Q psy4592          56 PNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG---DGFRFMSE-H-QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~-~-~~  129 (197)
                      ..+.+||..|+|.= ..+..+++..+...+++++.+++-.+.+++. ..      ..-+.....   +..+.+.. . ..
T Consensus       202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~~v~~~~~g~  274 (384)
T cd08265         202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GA------DYVFNPTKMRDCLSGEKVMEVTKGW  274 (384)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEEcccccccccHHHHHHHhcCCC
Confidence            45578888876422 2223345555533788999888877777663 11      001111111   22221221 1 34


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+|+|+....     ..    ...+..+.+.|+++|.++...
T Consensus       275 gvDvvld~~g-----~~----~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         275 GADIQVEAAG-----AP----PATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCEEEECCC-----Cc----HHHHHHHHHHHHcCCEEEEEC
Confidence            6998884321     11    335677888999999998753

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=82.33  E-value=15  Score=29.28  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          58 PKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        58 ~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.+||..|+  +.|..+..+++..+ .++++++.+++-.+.+++. ..     . .-+.....+...........+|+|+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~-----~-~v~~~~~~~~~~~~~~~~~~~d~vl  218 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLG-YEVVASTGKADAADYLKKL-GA-----K-EVIPREELQEESIKPLEKQRWAGAV  218 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHc-CC-----C-EEEcchhHHHHHHHhhccCCcCEEE
Confidence            468999987  34445555666555 5788888888887777552 21     0 0011000011111111234589887


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....           ...++.+.+.|+++|.++...
T Consensus       219 d~~g-----------~~~~~~~~~~l~~~G~~i~~g  243 (326)
T cd08289         219 DPVG-----------GKTLAYLLSTLQYGGSVAVSG  243 (326)
T ss_pred             ECCc-----------HHHHHHHHHHhhcCCEEEEEe
Confidence            3321           235677888999999988764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=82.14  E-value=25  Score=28.37  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .++.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. ..       .-+.....+....+..  ....+|
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~l~~~~~~~~~d  237 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GA-------EPINFEDAEPVERVREATEGRGAD  237 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CC-------eEEecCCcCHHHHHHHHhCCCCCC
Confidence            3457888887531 22333445555433788888877776666552 21       0011111122222221  234689


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....     .     ...+..+.+.|+++|.++...
T Consensus       238 vvid~~~-----~-----~~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         238 VVLEAVG-----G-----AAALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             EEEECCC-----C-----HHHHHHHHHhcccCCEEEEEC
Confidence            8885431     1     346678889999999988654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=81.88  E-value=23  Score=29.12  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=55.9

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh---cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY---LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+|..||.|+.+.+.+.........|+.--.+|+.++.....   -+.+.+-.-++++. ...|..+.+.    .+|+|+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~-at~Dl~~a~~----~ad~iv   76 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK-ATTDLAEALD----GADIIV   76 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccc-cccCHHHHHh----cCCEEE
Confidence            478899999876655533221225778888888887766543   11110000112222 2345544443    389999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...|....       .+.++++...++++-.++.-+
T Consensus        77 ~avPs~~~-------r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          77 IAVPSQAL-------REVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             EECChHHH-------HHHHHHHhhhccCCCeEEEEe
Confidence            87763222       456666666666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
2o05_A	304	Human Spermidine Synthase Length = 304		7e-66
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		8e-66
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		2e-50
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		2e-50
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		6e-42
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		1e-40
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		5e-38
1jq3_A	296	Crystal Structure Of Spermidine Synthase In Complex		7e-37
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		1e-35
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		1e-35
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		2e-35
3anx_A	314	Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR		9e-34
1uir_A	314	Crystal Structure Of Polyamine Aminopropyltransfeas		3e-33
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		3e-30
2e5w_A	280	Crystal Structure Of Spermidine Synthase From Pyroc		3e-24

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score =  246 bits (627), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)
Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct: 92  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211
Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score =  246 bits (627), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)
Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct: 92  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211
Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 138/200 (69%), Gaps = 8/200 (4%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SLQV++  +   S  ++        +G  L+LDGI+Q TE DEFSY EM+A LP+ 
Sbjct: 45  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 104
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HP+PK+VLI+GGGDGG+ REVLKH SVE   + EID  VI+V+KK+LPGM+ G S P+L
Sbjct: 105 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 164
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +  GDGF F+  H+ EFDVIITDSSDPVGPAESLF  SY+EL+  AL+  GI+ SQ  +
Sbjct: 165 DLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224
Query: 174 LWYSLDCVGNTLQHCASVFP 193
           +W  L  + + +     +FP
Sbjct: 225 VWLHLPLIAHLVAFNRKIFP 244

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 134/200 (67%), Gaps = 9/200 (4%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S+ ++        +G  L+LDG+IQ TE DE +Y E I  LPLC
Sbjct: 57  GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLC 116
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H S+E     EID  V++VSK++ P +A+G  DPR+
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRV 176
Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +F+ ++RALRPGG+VC+QA 
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236
Query: 173 TLWYSLDCVGNTLQHCASVF 192
           +LW   D + + + +C  +F
Sbjct: 237 SLWLHXDIIEDIVSNCREIF 256

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score =  166 bits (421), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 121/192 (63%), Gaps = 12/192 (6%)
Query: 2   GVSLSLQVEEPFYPS-----------SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFL 50
           G + SL+VE+  Y +           S  +  +GT   LDG IQ T++DEF Y E++   
Sbjct: 29  GQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYDEFVYHEVLGHT 88
Query: 51  PLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD 110
            LCSHP P++VLI+GGGDGGV REVL+H +VE   LV+ID  V E SK++ P ++  L+D
Sbjct: 89  SLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQHFPQISRSLAD 148
Query: 111 PRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
           PR TV VGDG  F+ +     +DV+I D++DP GPA  LF  ++++ + R L+P GI C+
Sbjct: 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208
Query: 170 QAGTLWYSLDCV 181
           Q  ++W  L+ +
Sbjct: 209 QGESIWLDLELI 220

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/195 (44%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Query: 1   MGVSLSLQVEEPFYP--SSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNP 58
           M V+ +L  E+  +        +EFG  L LDG++  +E DEF Y EM+A +PL +HPNP
Sbjct: 17  MKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNP 76
Query: 59  KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118
           + VL+VGGGDGGV RE+LKHPSV+ A LV+ID +VIE SKK+LP +A  L DPR+ V V 
Sbjct: 77  EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD 136
Query: 119 DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 178
           DGF  +++ + ++DVI+ DS++PVGPA +LF   ++  +++AL+  GI  +Q    W++ 
Sbjct: 137 DGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTP 196
Query: 179 DCVGNTLQHCASVFP 193
           + + N  +    +FP
Sbjct: 197 ELITNVQRDVKEIFP 211

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 23  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE 82
           FG  + LDG++Q TE DEF Y EM+  +PL +H + K VLI+GGGDG + REV +H +VE
Sbjct: 49  FGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE 108
Query: 83  SAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
           S  +VEID  V+   ++YLP    G   DPR  + + DG  F+++  Q FDVII+D +DP
Sbjct: 109 SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDP 168
Query: 142 VGPAESLFQASYFELMSRALRPGGIVCSQAG 172
           +GP ESLF ++++E   R L PGGI  +Q G
Sbjct: 169 IGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199

>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296

Iteration: 1
 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 22  EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSV 81
           + G    LDGI   TE DEF Y EM+A +P+  HPNPKKVLI+GGGDGG  REVLKH SV
Sbjct: 55  DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSV 114
Query: 82  ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
           E A L E+D  VIE ++KYL   + G  DPR  + + +G  ++ + + EFDVII DS+DP
Sbjct: 115 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDP 174
Query: 142 V-GPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
             G    LF   +++    AL+  G+  ++    +Y +       +  + VFP
Sbjct: 175 TAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP 227

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++++  Y + S  +         +G  L+LDG+IQ TE DEF+Y EM+  +P+ 
Sbjct: 53  GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 112
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
               PK VL+VGGGDGG+ RE+ K+ SVE+  + EID  VIEVSK Y   ++ G  D R+
Sbjct: 113 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 172
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V + D  +F+      +DVII DSSDP+GPAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 173 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232
Query: 174 LWYSLDCVGNTLQHCASVFPRL 195
           LW  +  + N + +   +F ++
Sbjct: 233 LWIHVGTIKNMIGYAKKLFKKV 254

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++++  Y + S  +         +G  L+LDG+IQ TE DEF+Y EM+  +P+ 
Sbjct: 14  GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 73
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
               PK VL+VGGGDGG+ RE+ K+ SVE+  + EID  VIEVSK Y   ++ G  D R+
Sbjct: 74  VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 133
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V + D  +F+      +DVII DSSDP+GPAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 134 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 193
Query: 174 LWYSLDCVGNTLQHCASVFPRLH 196
           LW  +  + N + +   +F ++ 
Sbjct: 194 LWIHVGTIKNMIGYAKKLFKKVE 216

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++++  Y + S  +         +G  L+LDG+IQ TE DEF+Y EM+  +P+ 
Sbjct: 15  GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 74
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
               PK VL+VGGGDGG+ RE+ K+ SVE+  + EID  VIEVSK Y   ++ G  D R+
Sbjct: 75  VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 134
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V + D  +F+      +DVII DSSDP+GPAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 135 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194
Query: 174 LWYSLDCVGNTLQHCASVFPRLH 196
           LW  +  + N + +   +F ++ 
Sbjct: 195 LWIHVGTIKNMIGYAKKLFKKVE 217

>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLIVGGG+G   REVLKHP+
Sbjct: 41  KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT 100
Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139
           VE A +V+ID  ++EV+K+++P    G   DPR  + + D   ++   ++ +DV+I D +
Sbjct: 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT 160
Query: 140 DPVG---PAESLFQASYFELMSRALRPGGIVCSQAGTL 174
           DPVG   PA  L+   ++ L+   L PGG++  QAG +
Sbjct: 161 DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQAGMI 198

>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 21  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
           K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLIVGGG+G   REVLKHP+
Sbjct: 41  KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT 100
Query: 81  VESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139
           VE A +V+ID  ++EV+K+++P    G   DPR  + + D   ++   ++ +DV+I D +
Sbjct: 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT 160
Query: 140 DPVG---PAESLFQASYFELMSRALRPGGIVCSQAGTL 174
           DPVG   PA  L+   ++ L+   L PGG++  Q G +
Sbjct: 161 DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 18/210 (8%)
Query: 2   GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G  ++ ++++  Y   S  ++        FG  L LDG +Q     E SY E +    + 
Sbjct: 12  GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HP PK+VL++GGGDGG  REVL+H  V+   +VEID  VI VSK  L  +  GL +  L
Sbjct: 72  AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKD-LIKIDNGLLEAML 129
Query: 114 T-------VHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
                   + +GDGF F+ ++ + FDVII DS+DPVGPA+ LF   ++  +  AL   GI
Sbjct: 130 NGKHEKAKLTIGDGFEFI-KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 167 VCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196
             +QAG+++   D + +  +    VF R++
Sbjct: 189 YVTQAGSVYLFTDELISAYKEMKKVFDRVY 218

>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 9/181 (4%)
Query: 23  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE 82
           FG  L +DG +Q     E SY E +    + +HPNP++VLI+GGGDGG  REVLKH  VE
Sbjct: 42  FGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPNPRRVLIIGGGDGGAIREVLKHEEVE 101
Query: 83  SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-------VHVGDGFRFMSEHQQEFDVII 135
              +VEID +VIE+S KY+ G+  G+ +  L+       + +GDG +F+ E+   FDVII
Sbjct: 102 EVIMVEIDKKVIEISAKYI-GIDGGILEKMLSDKHEKGKLIIGDGVKFIEENSG-FDVII 159
Query: 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195
            DS+DPVGPAE LF   +++   RAL   GI  +QAG+++   D      +    VF ++
Sbjct: 160 VDSTDPVGPAEMLFSEEFYKNAYRALNDPGIYVTQAGSVYLFTDEFLTAYRKMRKVFDKV 219
Query: 196 H 196
           +
Sbjct: 220 Y 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
2i7c_A	283	Spermidine synthase; transferase, structural genom	1e-103
2pt6_A	321	Spermidine synthase; transferase, structural genom	1e-103
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	1e-103
2o07_A	304	Spermidine synthase; structural genomics, structur	1e-102
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	1e-102
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-100
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	1e-100
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	1e-99
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	3e-96
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	4e-94
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	1e-92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	7e-75
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	9e-74
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	4e-37
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-08
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-06
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	2e-06
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	5e-06
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	5e-06
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	6e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	9e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	1e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	4e-05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	6e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	7e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	8e-05
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-04
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	3e-04
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	4e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-04

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score =  299 bits (767), Expect = e-103
 Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++++  Y + S            +G  L+LDG+IQ TE DEF+Y EM+  +P+ 
Sbjct: 15  GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 74

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
               PK VL+VGGGDGG+ RE+ K+ SVE+  + EID  VIEVSK Y   ++ G  D R+
Sbjct: 75  VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 134

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V + D  +F+      +DVII DSSDP+GPAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 135 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194

Query: 174 LWYSLDCVGNTLQHCASVFP 193
           LW  +  + N + +   +F 
Sbjct: 195 LWIHVGTIKNMIGYAKKLFK 214

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score =  300 bits (769), Expect = e-103
 Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL++++  Y + S            +G  L+LDG+IQ TE DEF+Y EM+  +P+ 
Sbjct: 53  GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 112

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
               PK VL+VGGGDGG+ RE+ K+ SVE+  + EID  VIEVSK Y   ++ G  D R+
Sbjct: 113 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 172

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V + D  +F+      +DVII DSSDP+GPAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 173 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232

Query: 174 LWYSLDCVGNTLQHCASVFP 193
           LW  +  + N + +   +F 
Sbjct: 233 LWIHVGTIKNMIGYAKKLFK 252

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score =  299 bits (767), Expect = e-103
 Identities = 103/200 (51%), Positives = 136/200 (68%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SLQV++  +   S            +G  L+LDGI+Q TE DEFSY EM+A LP+ 
Sbjct: 45  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 104

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HP+PK+VLI+GGGDGG+ REVLKH SVE   + EID  VI+V+KK+LPGM+ G S P+L
Sbjct: 105 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 164

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +  GDGF F+  H+ EFDVIITDSSDPVGPAESLF  SY+EL+  AL+  GI+ SQ  +
Sbjct: 165 DLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224

Query: 174 LWYSLDCVGNTLQHCASVFP 193
           +W  L  + + +     +FP
Sbjct: 225 VWLHLPLIAHLVAFNRKIFP 244

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score =  296 bits (759), Expect = e-102
 Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct: 92  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score =  294 bits (755), Expect = e-102
 Identities = 84/200 (42%), Positives = 130/200 (65%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
              ++++V +  +   +          +EFG  L LDG++  +E DEF Y EM+A +PL 
Sbjct: 12  NFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLF 71

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HPNP+ VL+VGGGDGGV RE+LKHPSV+ A LV+ID +VIE SKK+LP +A  L DPR+
Sbjct: 72  THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV 131

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V V DGF  +++ + ++DVI+ DS++PVGPA +LF   ++  +++AL+  GI  +Q   
Sbjct: 132 DVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W++ + + N  +    +FP
Sbjct: 192 PWFTPELITNVQRDVKEIFP 211

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score =  289 bits (742), Expect = e-100
 Identities = 78/201 (38%), Positives = 109/201 (54%), Gaps = 9/201 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
            V L +++    Y   S           + G    LDGI   TE DEF Y EM+A +P+ 
Sbjct: 27  NVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMF 86

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
            HPNPKKVLI+GGGDGG  REVLKH SVE A L E+D  VIE ++KYL   + G  DPR 
Sbjct: 87  LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA 146

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + + +G  ++ + + EFDVII DS+DP  G    LF   +++    AL+  G+  ++  
Sbjct: 147 EIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206

Query: 173 TLWYSLDCVGNTLQHCASVFP 193
             +Y +       +  + VFP
Sbjct: 207 DPFYDIGWFKLAYRRISKVFP 227

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score =  290 bits (745), Expect = 1e-99
 Identities = 92/201 (45%), Positives = 134/201 (66%), Gaps = 9/201 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S            +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 57  GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 116

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H S+E   + EID  V++VSK++ P +A+G  DPR+
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV 176

Query: 114 TVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +F+ ++RALRPGG+VC+QA 
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236

Query: 173 TLWYSLDCVGNTLQHCASVFP 193
           +LW  +D + + + +C  +F 
Sbjct: 237 SLWLHMDIIEDIVSNCREIFK 257

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score =  280 bits (719), Expect = 3e-96
 Identities = 83/205 (40%), Positives = 126/205 (61%), Gaps = 13/205 (6%)

Query: 2   GVSLSLQVEEPFYPSSS-----------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFL 50
           G ++SL+VE+  Y + +            +  +GT + LDG IQ T++DEF Y E++   
Sbjct: 29  GQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHT 88

Query: 51  PLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD 110
            LCSHP P++VLI+GGGDGGV REVL+H +VE   LV+ID  V+E SK++ P ++  L+D
Sbjct: 89  SLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLAD 148

Query: 111 PRLTVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
           PR TV VGDG  F+ +     +DV+I D++DP GPA  LF  ++++ + R L+P GI C+
Sbjct: 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208

Query: 170 QAGTLWYSLDCVGNTLQHCASV-FP 193
           Q  ++W  L+ +    +      F 
Sbjct: 209 QGESIWLDLELIEKMSRFIRETGFA 233

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score =  275 bits (706), Expect = 4e-94
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 13/205 (6%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             +L  ++E       +          K FG  LILD  +Q TE DE+ Y E +    + 
Sbjct: 14  YETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAML 73

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPR 112
           +HP PK+VLIVGGG+G   REVLKHP+VE A +V+ID  ++EV+K+++P    G   DPR
Sbjct: 74  THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR 133

Query: 113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVG---PAESLFQASYFELMSRALRPGGIVCS 169
             + + D   ++   ++ +DV+I D +DPVG   PA  L+   ++ L+   L PGG++  
Sbjct: 134 AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193

Query: 170 QAGTLWYSLDCVGNTLQH-CASVFP 193
           Q G +  +   V   +       F 
Sbjct: 194 QTGMILLTHHRVHPVVHRTVREAFR 218

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score =  270 bits (693), Expect = 1e-92
 Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 16/206 (7%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G  ++ ++++  Y   S          + FG  L LDG +Q     E SY E +    + 
Sbjct: 12  GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA------VG 107
           +HP PK+VL++GGGDGG  REVL+H  V+   +VEID  VI VSK  +          + 
Sbjct: 72  AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN 130

Query: 108 LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
               +  + +GDGF F+  ++  FDVII DS+DPVGPA+ LF   ++  +  AL   GI 
Sbjct: 131 GKHEKAKLTIGDGFEFIKNNRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY 189

Query: 168 CSQAGTLWYSLDCVGNTLQHCASVFP 193
            +QAG+++   D + +  +    VF 
Sbjct: 190 VTQAGSVYLFTDELISAYKEMKKVFD 215

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score =  222 bits (567), Expect = 9e-74
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 24/200 (12%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
            +     +E       S          K+FG   +L+  +          SE++A +  C
Sbjct: 10  YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLFKN-FLHIESELLAHMGGC 68

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +    K+VLIV G D  +A ++ K+        V+ D ++++    + P       + + 
Sbjct: 69  TKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFFPHF----HEVKN 122

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
             +     + +    +++D+I       +   + L          R L+  G+  S A  
Sbjct: 123 NKNFTHAKQLLDLDIKKYDLIFCLQEPDIHRIDGLK---------RMLKEDGVFISVAKH 173

Query: 174 LWYSLDCVGNTLQHCASVFP 193
                  + N L++   VF 
Sbjct: 174 PLLEHVSMQNALKNMGGVFS 193

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score =  130 bits (327), Expect = 4e-37
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 17/188 (9%)

Query: 21  KEFGTALILDGIIQCT------EFDEFSYSEMIA-----FLPLCSHPNPKKVLIVGGGDG 69
              G  + ++G+          +  EF Y   IA     F+      +  ++  +GGG  
Sbjct: 42  TTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGAC 101

Query: 70  GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ 129
            +AR            +VE+D  +  +S+++          PR+ + V D          
Sbjct: 102 TMARYFADVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTP 157

Query: 130 E-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 188
              DVII D        ++     +FE   R L PGG+  +  G     L    + L   
Sbjct: 158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD-HSDLRGAKSELAGM 216

Query: 189 ASVFPRLH 196
             VF  + 
Sbjct: 217 MEVFEHVA 224

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 57  NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP-RLTV 115
           N ++V+ +G G G + + +LK    E    V++  R +E++++ L  + +  +   RL +
Sbjct: 29  NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88

Query: 116 HVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
             G    +  +    +D               L   ++  ++    +P  ++ +
Sbjct: 89  IQGA-LTYQDKRFHGYDAATVIEVIEHLDLSRL--GAFERVLFEFAQPKIVIVT 139

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 57  NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL-PGMAVGLSDPRLTV 115
           N KKV+ +G G+G +   +LK  S E    V++   V+E +K  L       +   R+++
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88

Query: 116 HVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
                  +  +    +D       + +   +     ++ +++    RP  ++ S
Sbjct: 89  FQSS-LVYRDKRFSGYDAAT--VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS 139

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 24/99 (24%)

Query: 87  VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA- 145
           V+ D   + V  +     A      R+ +  G+    +   +  F  ++    DP  P  
Sbjct: 242 VDKDLEALGVLDQ-----AALRLGLRVDIRHGEALPTLRGLEGPFHHVLL---DP--PTL 291

Query: 146 ----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
               E L        +L+  A   L   G +    CS  
Sbjct: 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 29/172 (16%)

Query: 2   GVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKV 61
              L+ Q E  F   +  R  F  A+              S   +     L      + V
Sbjct: 135 EKPLAFQQESRFAHDTRARDAFNDAM-----------VRLSQPMVDVVSELGVFARARTV 183

Query: 62  LIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
           + + GG G    +VL+ HP +    + ++     + ++K +   A  L   R+     + 
Sbjct: 184 IDLAGGHGTYLAQVLRRHPQLT-GQIWDLPT-TRDAARKTIH--AHDLGG-RVEFFEKNL 238

Query: 121 FRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFELMSRALRPGGIV 167
               +      DV++              A  +   +        ++PGG +
Sbjct: 239 LDARNFEGGAADVVMLNDCLHYFDARE--AREVIGHAA-----GLVKPGGAL 283

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 20/130 (15%)

Query: 44  SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLP 102
           +++IA L   +   P KVL +    G     V + +P+ E  + V+  + V+EV+K+   
Sbjct: 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAE-IFGVDWAS-VLEVAKENAR 209

Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFELM 157
               G++  R     G  F    ++  ++D+++               E L +       
Sbjct: 210 --IQGVAS-RYHTIAGSAFE--VDYGNDYDLVLLPNFLHHFDVAT--CEQLLRKIK---- 258

Query: 158 SRALRPGGIV 167
             AL   G V
Sbjct: 259 -TALAVEGKV 267

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 18/133 (13%)

Query: 42  SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKY 100
           S       L +    +PK++L +GG  G  A + ++ +  VE   +V++    +E+ +K 
Sbjct: 164 SDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVE-VTIVDLPQ-QLEMMRKQ 221

Query: 101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFE 155
                +  S+ R+  H  +           FD +         S+      S+       
Sbjct: 222 TA--GLSGSE-RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEE--EVISILTRVA-- 274

Query: 156 LMSRALRPGGIVC 168
              +++     V 
Sbjct: 275 ---QSIGKDSKVY 284

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 57  NPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
           +   ++  G G G +   +L +  S+++   V+I  + +  + K L       +    + 
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780

Query: 116 HVGDG-FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
            + DG          + D+            +      + E +     P  ++ S
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQA--CEFGEKVLSLFHPKLLIVS 833

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 29/143 (20%)

Query: 49  FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
           F+         +++ +G G+G +   +L          V+     +  S+  +       
Sbjct: 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA 273

Query: 109 SDPRLTVHVGDGFRFMSEHQQEFDVIIT--------DSSDPVGPAESLFQASYFELMSRA 160
            D R    + +    +   +  F+ ++           +D V  A  +F  +      R 
Sbjct: 274 LD-RCEFMINNALSGVEPFR--FNAVLCNPPFHQQHALTDNV--AWEMFHHAR-----RC 323

Query: 161 LRPGGIVCSQAGTLWYSLDCVGN 183
           L+         G L+     V N
Sbjct: 324 LKIN-------GELY----IVAN 335

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 87  VEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFM---SEHQQEFDVIITDSSDPV 142
           V++  R   +S           L      + V D F +      H   +D+II    DP 
Sbjct: 241 VDLAKRSRALSLA---HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII---DP- 293

Query: 143 GPA-----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
            P+     + +F  S  Y +L+ +    L   G++     +  
Sbjct: 294 -PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 30/141 (21%)

Query: 49  FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
            L   +     KVL VG G G ++    +H       L ++    +E S+       +  
Sbjct: 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-----TLAA 242

Query: 109 SDPRLTVHVGDGFRFMSEHQQEFDVIIT------DSSDPVGPAESLFQASYFELMSRALR 162
           +     V   + F   SE +  FD+II+           +  A++L + +      R L 
Sbjct: 243 NGVEGEVFASNVF---SEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAV-----RHLN 294

Query: 163 PGGIVCSQAGTLWYSLDCVGN 183
            G       G L      V N
Sbjct: 295 SG-------GELR----IVAN 304

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 29  LDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE 88
           L G+    + D       IA LP        + L  G G G + + +L      +  L+E
Sbjct: 68  LGGMDHVHDVDIEGSRNFIASLP---GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLE 123

Query: 89  IDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESL 148
               ++E +K+ L GM VG         +             +D+I+             
Sbjct: 124 PVKHMLEEAKRELAGMPVG------KFILASMETATLP-PNTYDLIV--IQWTAIYLTDA 174

Query: 149 FQASYFELMSRALRPGGIVC 168
               +F+   +AL P G + 
Sbjct: 175 DFVKFFKHCQQALTPNGYIF 194

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 43  YSEMIAF-LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL 101
           Y E++     L      ++ + +GGG   +   +L H       +VEI+  + E+S+K  
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK-- 164

Query: 102 PGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL 161
             +  GL    + V  GD          EFDV++  +     P   +F+      + R +
Sbjct: 165 --VIEGLGVDGVNVITGDETVI---DGLEFDVLMVAA--LAEPKRRVFRN-----IHRYV 212

Query: 162 RPGGIVC 168
                + 
Sbjct: 213 DTETRII 219

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 35/133 (26%), Positives = 46/133 (34%), Gaps = 32/133 (24%)

Query: 45  EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVSK 98
           EMIA L +    +  +VL VG G G  A  +     V       S   V   N       
Sbjct: 52  EMIALLDV---RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARAT--- 105

Query: 99  KYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLF----QASYF 154
                 A GL++ R+T    D    +      FD +           ESL     +    
Sbjct: 106 ------AAGLAN-RVTFSYAD-AMDLPFEDASFDAVWA--------LESLHHMPDRGRAL 149

Query: 155 ELMSRALRPGGIV 167
             M+R LRPGG V
Sbjct: 150 REMARVLRPGGTV 162

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 45  EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
           ++++ + L  + N  KVL +G G GG    + +       + ++I + ++ ++ +     
Sbjct: 46  KILSDIEL--NEN-SKVLDIGSGLGGGCMYINEKYGAH-THGIDICSNIVNMANER---- 97

Query: 105 AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-DSSDPVGPAESLFQASYFELMSRALRP 163
            V  ++ ++     D        +  FD+I + D+   +       +   F+   + L+P
Sbjct: 98  -VSGNN-KIIFEAND-ILTKEFPENNFDLIYSRDAILALSLE---NKNKLFQKCYKWLKP 151

Query: 164 GGIV 167
            G +
Sbjct: 152 TGTL 155

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 30/135 (22%)

Query: 45  EMIAFLPLCSHPNP-KKVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVS 97
            + + L +        K L +G G GG AR +++   V       +    + +       
Sbjct: 69  WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-- 126

Query: 98  KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLF----QASY 153
                    GL+D  +TV  G  F  +      +D I +         ++      +   
Sbjct: 127 -------QAGLAD-NITVKYGS-FLEIPCEDNSYDFIWS--------QDAFLHSPDKLKV 169

Query: 154 FELMSRALRPGGIVC 168
           F+  +R L+P G++ 
Sbjct: 170 FQECARVLKPRGVMA 184

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 22/113 (19%)

Query: 60  KVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
            ++  G G GG      +           SA   +  NR             + + D  +
Sbjct: 120 TLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR---------ELRIDD-HV 169

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
              V +        +         +++             F   SR L+ GG 
Sbjct: 170 RSRVCN-MLDTPFDKGAVTASW--NNESTMYV---DLHDLFSEHSRFLKVGGR 216

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 26/108 (24%)

Query: 82  ESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFM---SEHQQEFDVIITD 137
                V+     ++++++    + +  L   +      D F+ +    +  ++FDVI+  
Sbjct: 244 SQVVSVDTSQEALDIARQ---NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM- 299

Query: 138 SSDPVGPA-----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
             DP  P        L  A   Y ++   A   L  GGI+    CS  
Sbjct: 300 --DP--PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 30/162 (18%)

Query: 37  EFDEFSYSEMIAFLPLCSHPNPK-KVLIVGGGDGGVAREVL-----KHPSVESAY-LVEI 89
              EF   ++   +        + K+L +GGG G +  ++L     ++P V     +VE 
Sbjct: 31  CMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP 90

Query: 90  DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE-----FDVIITDSS----- 139
               I   K+ +   +  L + +   H      + S   ++     +D I          
Sbjct: 91  SAEQIAKYKELVAKTS-NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK 149

Query: 140 DPVGPAESLFQASYFELMSRALRPGG---IVCSQAGTLWYSL 178
           D           +  +     L       I+     + W  L
Sbjct: 150 DIP---------ATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 182

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 45  EMIAFLPLCSHPNP-KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG 103
           ++  FL  C+  N  K VL  G G       +      +  Y +EI +  ++ ++ +   
Sbjct: 10  QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLKKAENFSRE 68

Query: 104 MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP 163
                 + +L +  GD  R +    +    + +  +        + +A   E + R L+P
Sbjct: 69  N-----NFKLNISKGD-IRKLPFKDESMSFVYSYGTIFHMRKNDVKEA-IDE-IKRVLKP 120

Query: 164 GGIVC 168
           GG+ C
Sbjct: 121 GGLAC 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	100.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	100.0
2o07_A	304	Spermidine synthase; structural genomics, structur	99.97
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.97
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.97
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.97
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.97
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.97
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.97
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.97
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.97
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.96
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.96
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.95
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.77
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.77
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.77
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.75
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.73
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.73
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.72
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.72
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.72
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.72
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.71
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.7
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.7
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.7
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.7
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.69
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.69
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.69
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.69
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.68
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.68
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.68
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.68
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.67
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.67
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.67
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.67
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.67
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.67
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.67
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.66
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.66
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.66
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.66
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.66
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.65
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.65
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.65
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.65
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.65
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.65
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.65
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.64
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.64
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.64
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.64
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.64
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.64
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.64
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.63
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.63
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.62
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.62
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.62
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.62
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.62
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.62
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.62
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.61
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.61
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.61
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.61
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.61
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.61
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.6
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.6
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.6
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.6
3ocj_A	305	Putative exported protein; structural genomics, PS	99.59
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.59
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.59
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.59
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.59
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.59
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.59
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.59
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.59
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.59
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.59
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.58
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.58
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.58
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.57
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.57
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.57
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.57
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.57
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.57
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.57
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.56
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.56
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.56
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.56
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.56
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.56
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.56
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.56
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.56
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.55
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.55
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.55
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.55
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.55
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.55
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.54
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.54
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.54
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.54
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.54
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.54
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.54
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.53
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.53
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.53
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.53
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.53
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.52
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.52
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.52
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.52
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.52
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.51
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.51
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.51
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.51
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.51
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.51
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.5
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.5
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.5
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.5
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.49
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.49
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.49
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.49
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.49
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.49
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.49
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.49
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.49
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.48
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.48
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.48
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.48
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.47
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.47
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.47
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.47
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.47
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.47
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.46
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.46
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.46
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.45
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.45
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.45
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.45
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.45
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.45
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.45
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.44
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.43
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.43
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.42
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.42
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.41
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.39
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.38
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.38
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.37
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.37
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.36
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.36
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.35
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.35
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.34
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.34
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.33
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.31
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.31
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.29
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.29
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.29
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.29
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.29
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.28
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.28
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.27
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.27
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.26
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.26
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.24
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.24
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.22
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.2
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.19
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.19
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.18
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.17
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.16
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	99.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.15
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.13
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.12
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.12
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.1
3khk_A	544	Type I restriction-modification system methylation	99.08
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.06
3lkd_A	542	Type I restriction-modification system methyltrans	99.05
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.03
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	99.02
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.99
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.95
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.93
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.92
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.88
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.76
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.75
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.74
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.7
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.67
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.61
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.55
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.44
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.37
3ufb_A	530	Type I restriction-modification system methyltran	98.32
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.3
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.29
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.27
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.27
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.25
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.19
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.08
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.88
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.75
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.75
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.72
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.53
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.41
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.26
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.24
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.23
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.19
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.17
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.15
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.12
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.09
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.06
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	97.05
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.02
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.01
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.0
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.97
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.95
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.88
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.83
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.79
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.73
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.73
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.72
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.63
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.59
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.58
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.56
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.53
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.51
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.5
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.47
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.46
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.36
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.34
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.33
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.28
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.2
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.15
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.13
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.11
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.1
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.07
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.05
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.05
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.93
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.89
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.79
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.78
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.72
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.71
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.7
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.68
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.67
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.65
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.56
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.56
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.4
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.29
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.28
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.24
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.19
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.15
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.12
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.12
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.05
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.96
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.96
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.95
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.94
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.92
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.92
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.91
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.77
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.72
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	94.72
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.66
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.61
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.56
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.24
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.95
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.82
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.79
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	93.73
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.66
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.59
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.54
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.52
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	93.42
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.42
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	93.41
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.09
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.08
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.06
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.06
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.02
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.88
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.56
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.54
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.54
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.84
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.71
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.62
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.52
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.46
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.44
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.37
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.22
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.19
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.1
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.92
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.87
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.87
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.85
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.84
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.72
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	90.67
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	90.53
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.46
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.4
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.29
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.18
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.17
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	90.14
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.07
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.98
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.97
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.9
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	89.9
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.78
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.74
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.72
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.68
3rih_A	293	Short chain dehydrogenase or reductase; structural	89.59
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.36
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	89.34
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.31
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	89.3
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.16
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	89.12
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.12
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.09
4gua_A	670	Non-structural polyprotein; viral precursor polypr	89.08
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.01
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.0
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.91
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.91
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	88.9
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.86
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.81
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	88.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.38
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	88.38
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.33
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	88.32
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	88.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.05
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.04
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.03
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	88.0
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.98
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.94
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	87.83
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	87.81
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	87.78
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.77
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.65
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.64
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	87.63
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	87.62
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.59
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.5
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	87.43
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	87.38
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	87.33
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.31
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	87.24
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	87.18
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	87.07
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	87.04
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.0
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	86.99
3cxt_A	291	Dehydrogenase with different specificities; rossma	86.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	86.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.88
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.69
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	86.59

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=100.00  E-value=1.4e-35  Score=234.52  Aligned_cols=193  Identities=38%  Similarity=0.719  Sum_probs=176.6

Q ss_pred             eeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHH
Q psy4592           4 SLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREV   75 (197)
Q Consensus         4 ~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l   75 (197)
                      ..+++++++|++++|+        +..||+.|++||.+|++.++++.|++++.+++++.+++|++||.||.|.|+.++++
T Consensus        22 ~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~rev  101 (294)
T 3o4f_A           22 GQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREV  101 (294)
T ss_dssp             EEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHH
T ss_pred             ceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHH
Confidence            3568899999999998        77899999999999999999999999999999988999999999999999999999


Q ss_pred             hcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHH
Q psy4592          76 LKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYF  154 (197)
Q Consensus        76 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~  154 (197)
                      ++..+..+++.|||||.+++.++++++.+. +.+++++++++.+|+.+++....++||+|++|.+.+..+...|++.+|+
T Consensus       102 lk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy  181 (294)
T 3o4f_A          102 TRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFY  181 (294)
T ss_dssp             HTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHH
T ss_pred             HHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHH
Confidence            998777899999999999999999986542 2246789999999999999887889999999999999888899999999


Q ss_pred             HHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         155 ELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       155 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +.++++|+|||+++.++.+++...+.+..+++.++++||.|+
T Consensus       182 ~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~  223 (294)
T 3o4f_A          182 EGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVG  223 (294)
T ss_dssp             HHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCcee
Confidence            999999999999999999999988999999999999999885

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=100.00  E-value=1.9e-32  Score=216.83  Aligned_cols=195  Identities=43%  Similarity=0.836  Sum_probs=170.9

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..+|+.+++||..|+...+++.|++++.+++++.++++++|||||||+|.++.
T Consensus        12 ~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~   91 (275)
T 1iy9_A           12 NFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIR   91 (275)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHH
T ss_pred             CcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEEECCchHHHHH
Confidence            567899999999999998        556889999999999998999999999998876656778999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..++++||+|+.+++.|+++++.+.+++..++++++++|+.++++...++||+|++|++.+..+...+++.++
T Consensus        92 ~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~  171 (275)
T 1iy9_A           92 EILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGF  171 (275)
T ss_dssp             HHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHH
T ss_pred             HHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHH
Confidence            99987666899999999999999999885322223457999999999998876567899999999987777777888999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||+++++..+++...+.++.+.+.++++|++|+
T Consensus       172 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  214 (275)
T 1iy9_A          172 YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITK  214 (275)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeE
Confidence            9999999999999999988888888899999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=100.00  E-value=2.8e-31  Score=210.97  Aligned_cols=195  Identities=41%  Similarity=0.763  Sum_probs=171.9

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..++.++++|++++|+        +..+|+.+++||..|+...+++.|++++.+++++.++++++|||||||+|.++.
T Consensus        15 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~   94 (283)
T 2i7c_A           15 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIR   94 (283)
T ss_dssp             TCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHH
T ss_pred             CceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeEEEEeCCcCHHHH
Confidence            567889999999999998        556899999999999999999999999998887767788999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..+++++|+|+.+++.|+++++.++.+++.++++++++|+.++++...++||+|++|.+.+..+...+++.++
T Consensus        95 ~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~  174 (283)
T 2i7c_A           95 ELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNF  174 (283)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHH
T ss_pred             HHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHH
Confidence            99987666899999999999999999987542223357899999999998776567899999999888777777888999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||+++++..+++...+....+.+.+++.|++++
T Consensus       175 l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  217 (283)
T 2i7c_A          175 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVE  217 (283)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceE
Confidence            9999999999999999998888888889999999999999875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.97  E-value=3.9e-31  Score=211.98  Aligned_cols=195  Identities=62%  Similarity=1.046  Sum_probs=161.1

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..+++++++|++++|+        +..+|+.|++||..++..++++.|++++.+++++.++++++|||||||+|.++.
T Consensus        32 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~  111 (304)
T 2o07_A           32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLR  111 (304)
T ss_dssp             TEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHH
T ss_pred             CceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            667899999999999999        556899999999999998999999999998876666778999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..++++||+|+.+++.|+++++.+..+++.++++++++|+.++++...++||+|++|.+.+..+...+.+.++
T Consensus       112 ~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~  191 (304)
T 2o07_A          112 EVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESY  191 (304)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHH
T ss_pred             HHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHH
Confidence            99988666899999999999999999875421122357899999999998776567899999999877766555666889


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +++++++|+|||+++++..++|...+..+.+.+.+++.|++++
T Consensus       192 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~  234 (304)
T 2o07_A          192 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVA  234 (304)
T ss_dssp             HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCce
Confidence            9999999999999999987888877788888999999999875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.97  E-value=5.8e-31  Score=211.68  Aligned_cols=195  Identities=53%  Similarity=0.956  Sum_probs=160.2

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..++.++++|++++|+        +..+|+.+++|+.+++..++.+.|++++.+++++.++++++|||||||+|.++.
T Consensus        45 ~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~~~~  124 (314)
T 2b2c_A           45 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILR  124 (314)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHH
T ss_pred             CceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHH
Confidence            566789999999999998        556899999999999998888999999988876656778899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..+++++|+|+.+++.|+++++....++..++++++++|+.++++...++||+|++|++.+..+...+++.++
T Consensus       125 ~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~  204 (314)
T 2b2c_A          125 EVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSY  204 (314)
T ss_dssp             HHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------H
T ss_pred             HHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHH
Confidence            99987666899999999999999999987532223357899999999998776567899999999877766666777899


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||+++++..++|...+..+.+.+.++++|++++
T Consensus       205 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~  247 (314)
T 2b2c_A          205 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVT  247 (314)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcce
Confidence            9999999999999999988888888889999999999999875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.97  E-value=4.1e-30  Score=207.50  Aligned_cols=195  Identities=41%  Similarity=0.763  Sum_probs=169.1

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...++.++++|++++|+        +..||+.+++|+..+.+.++.+.|++++.+++++.++++.+|||||||+|.++.
T Consensus        53 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~  132 (321)
T 2pt6_A           53 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIR  132 (321)
T ss_dssp             TCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHH
T ss_pred             CceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHH
Confidence            567789999999999999        457899999999999999999999999988776656778899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..+++++|+|+.+++.|+++++.+.++++.++++++++|+.++++...++||+|++|++.+..+...+++.++
T Consensus       133 ~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~  212 (321)
T 2pt6_A          133 ELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNF  212 (321)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHH
T ss_pred             HHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHH
Confidence            99987666899999999999999999987532223357899999999988766567899999999877666666777899


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||+++++..+++...+.++.+.+.+++.|++++
T Consensus       213 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  255 (321)
T 2pt6_A          213 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVE  255 (321)
T ss_dssp             HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeE
Confidence            9999999999999999988888888899999999999999875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.97  E-value=1.4e-30  Score=208.12  Aligned_cols=195  Identities=40%  Similarity=0.727  Sum_probs=161.4

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...++.++++|++++|+        +..+|+.+++|+..++...+.+.|++++.+++++.++++.+|||||||+|.++.
T Consensus        27 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~  106 (296)
T 1inl_A           27 NVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR  106 (296)
T ss_dssp             SEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHH
T ss_pred             CceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCEEEEEcCCcCHHHH
Confidence            567889999999999998        556899999999999888888899999988876656777899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCC-CCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP-VGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~-~~~~~~l~~~~  152 (197)
                      ++++..+..+++++|+|+.+++.|+++++.+..+++.++++++++|+.++++...++||+|++|++.+ ..+...+++.+
T Consensus       107 ~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~  186 (296)
T 1inl_A          107 EVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEE  186 (296)
T ss_dssp             HHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHH
T ss_pred             HHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHH
Confidence            99987666899999999999999999875321112357899999999987765567899999999877 55555667799


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +++.++++|+|||++++++.+++...+.+..+.+.++++|++|+
T Consensus       187 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  230 (296)
T 1inl_A          187 FYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR  230 (296)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceE
Confidence            99999999999999999998888888889999999999999875

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.97  E-value=4.6e-30  Score=203.74  Aligned_cols=192  Identities=39%  Similarity=0.707  Sum_probs=162.7

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..++.++++|++++|+        +..+|+.|++||..++...+.+.|++++.+++++.++++++|||||||+|.++.
T Consensus        12 ~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~   91 (281)
T 1mjf_A           12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVR   91 (281)
T ss_dssp             GEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred             CceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEEEcCCcCHHHH
Confidence            567889999999999999        456899999999999988888999998888766556778899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCC-------CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCc
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL-------SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAE  146 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~  146 (197)
                      ++++. +..++++||+|+.+++.|++++ ....++       ..++++++++|+.+++.. .++||+|++|++.+..+..
T Consensus        92 ~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~  168 (281)
T 1mjf_A           92 EVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAK  168 (281)
T ss_dssp             HHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC----
T ss_pred             HHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCCcch
Confidence            99988 6689999999999999999998 432222       356899999999988776 6789999999988776666


Q ss_pred             ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         147 SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       147 ~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      .+++.++++.++++|+|||+++++..+++...+.++.+.+.+++.|+++.
T Consensus       169 ~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~  218 (281)
T 1mjf_A          169 VLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVY  218 (281)
T ss_dssp             -TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred             hhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceE
Confidence            67679999999999999999999987787778889999999999999875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.97  E-value=2e-30  Score=208.77  Aligned_cols=195  Identities=35%  Similarity=0.627  Sum_probs=165.5

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...++.++++|++++|+        +..+|+.+++||..|+...+.+.|++++.+++++.++++++|||||||+|.++.
T Consensus        14 ~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~   93 (314)
T 1uir_A           14 YETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLR   93 (314)
T ss_dssp             SEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred             CcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeEEEEcCCcCHHHH
Confidence            567788999999999998        567899999999999998899999999998877666788999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCC---CCCcccc
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPV---GPAESLF  149 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~---~~~~~l~  149 (197)
                      ++++..+..++++||+|+.+++.|+++++.+..+ ++.++++++++|+.++++...++||+|++|.+.+.   .+...++
T Consensus        94 ~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~  173 (314)
T 1uir_A           94 EVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLY  173 (314)
T ss_dssp             HHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGS
T ss_pred             HHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhcc
Confidence            9998766679999999999999999987532111 23578999999999987766678999999998877   5556677


Q ss_pred             cHHHHHHHHhhcCCCcEEEEEcCCCC-cChhHHHHHHHHHHhhCCccc
Q psy4592         150 QASYFELMSRALRPGGIVCSQAGTLW-YSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       150 ~~~~~~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +.++++.++++|||||+++++..+++ ...+..+.+.+.++++|++++
T Consensus       174 ~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  221 (314)
T 1uir_A          174 TVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR  221 (314)
T ss_dssp             SHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceE
Confidence            79999999999999999999987766 556788899999999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.97  E-value=1.7e-29  Score=204.65  Aligned_cols=193  Identities=48%  Similarity=0.944  Sum_probs=165.9

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..||+.+++|+.++...++.+.|++++.+++++..+++++|||||||+|.++.
T Consensus        57 ~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~  136 (334)
T 1xj5_A           57 GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLR  136 (334)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHH
T ss_pred             CceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHH
Confidence            667889999999999999        567999999999999999999999999999887666778899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      .+++..+..++++||+|+.+++.|+++++.+..++..++++++++|+.++++. ..++||+|++|++.+..+...++..+
T Consensus       137 ~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~  216 (334)
T 1xj5_A          137 EVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKP  216 (334)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHH
T ss_pred             HHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHH
Confidence            99988666899999999999999999875321122346899999999988764 24689999999987666555566789


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      +++.++++|+|||++++++.++|......+...+.+++.|+.
T Consensus       217 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  258 (334)
T 1xj5_A          217 FFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG  258 (334)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence            999999999999999999888888777788888999999985

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.97  E-value=2e-29  Score=202.13  Aligned_cols=195  Identities=43%  Similarity=0.845  Sum_probs=160.8

Q ss_pred             cceeeeeeeceeecCCCC--------CC---CCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RK---EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGG   70 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~   70 (197)
                      |+..++.++++|++++|+        +.   .||+.+++||..++...+.+.|++++.++++..++++.+|||||||+|.
T Consensus        29 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~  108 (304)
T 3bwc_A           29 GQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGG  108 (304)
T ss_dssp             SEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSH
T ss_pred             CceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhhhcCCCCCeEEEEcCCCCH
Confidence            567889999999999998        44   6899999999999998888999999998877666778899999999999


Q ss_pred             hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccc
Q psy4592          71 VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLF  149 (197)
Q Consensus        71 ~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~  149 (197)
                      ++..+++..+..++++||+|+.+++.|+++++.+......++++++++|+.+++.. ..++||+|++|.+.+..+...++
T Consensus       109 ~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~  188 (304)
T 3bwc_A          109 VLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLF  188 (304)
T ss_dssp             HHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------C
T ss_pred             HHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhh
Confidence            99999987666799999999999999999874221112457899999999987754 46789999999988877777788


Q ss_pred             cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCccc
Q psy4592         150 QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRLH  196 (197)
Q Consensus       150 ~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~v~  196 (197)
                      +.+++++++++|||||+++++..+++......+.+.+.+++. |+.|+
T Consensus       189 ~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~  236 (304)
T 3bwc_A          189 GEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQ  236 (304)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence            899999999999999999999888888778888999999999 98774

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.96  E-value=4.9e-29  Score=202.51  Aligned_cols=191  Identities=26%  Similarity=0.375  Sum_probs=161.0

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |..++++++++|++++|+        +..||+.|++||.+|++..+ +.|++++.+.+++.+ ++++||.||.|.|+.++
T Consensus       144 g~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~~~-~pkrVLIIGgGdG~~~r  221 (381)
T 3c6k_A          144 GRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDY-TGKDVLILGGGDGGILC  221 (381)
T ss_dssp             CCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTCCCC-TTCEEEEEECTTCHHHH
T ss_pred             CcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHhhcC-CCCeEEEECCCcHHHHH
Confidence            778999999999999999        77899999999999999988 679999998877654 57899999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CC---CCCeEEEEcchHHHHhh---cCCceeEEEECCCCCC----
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LS---DPRLTVHVGDGFRFMSE---HQQEFDVIITDSSDPV----  142 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~d~~~~~~~---~~~~~D~I~~~~~~~~----  142 (197)
                      ++++..+ .+++.|||||++++.++++++.+..+ ++   .++++++.+|+.+++..   ..++||+|+.|.+.+.    
T Consensus       222 evlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~  300 (381)
T 3c6k_A          222 EIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTS  300 (381)
T ss_dssp             HHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC
T ss_pred             HHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCc
Confidence            9998755 79999999999999999998765322 22   35699999999999864   3578999999976532    


Q ss_pred             --CCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         143 --GPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       143 --~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                        .+...+++.+|++.++++|+|||+++.++++++. .+.+..+.+.+++.|+.|+
T Consensus       301 p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~-~~~~~~i~~tl~~vF~~v~  355 (381)
T 3c6k_A          301 PEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL-TEALSLYEEQLGRLYCPVE  355 (381)
T ss_dssp             ----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC-HHHHHHHHHHHTTSSSCEE
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-hhHHHHHHHHHHHhCCcce
Confidence              2345678899999999999999999999888876 4677888999999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=3.2e-28  Score=194.84  Aligned_cols=171  Identities=22%  Similarity=0.318  Sum_probs=145.5

Q ss_pred             CCCCcEEEEcCeeeeec------cchhhHHHHHHhhccc---CCCCCC--eEEEEeCCchHhHHHHhcCCCCccEEEEEc
Q psy4592          21 KEFGTALILDGIIQCTE------FDEFSYSEMIAFLPLC---SHPNPK--KVLIVGGGDGGVAREVLKHPSVESAYLVEI   89 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~   89 (197)
                      +.+|+.|++||..|+..      ...+.|++++.+..++   .+++++  +|||||||+|.++.++++..+..++++||+
T Consensus        42 ~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEi  121 (317)
T 3gjy_A           42 TTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVEL  121 (317)
T ss_dssp             STTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEES
T ss_pred             CCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEEC
Confidence            35899999999999874      4689999999888765   355555  999999999999999998555579999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592          90 DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      |+.+++.|+++++..    ..++++++++|+.+++... .++||+|++|.+.+.....++++.++++.++++|+|||+|+
T Consensus       122 dp~vi~~Ar~~~~~~----~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv  197 (317)
T 3gjy_A          122 DAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYV  197 (317)
T ss_dssp             CHHHHHHHHHHSCCC----CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHhcccc----CCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEE
Confidence            999999999998753    3578999999999988653 57899999999887776678888999999999999999999


Q ss_pred             EEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         169 SQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++..+. .....++.+++.++++|++|.
T Consensus       198 ~~~~~~-~~~~~~~~~~~tL~~vF~~v~  224 (317)
T 3gjy_A          198 ANCGDH-SDLRGAKSELAGMMEVFEHVA  224 (317)
T ss_dssp             EEEEEC-TTCHHHHHHHHHHHHHCSEEE
T ss_pred             EEecCC-cchHHHHHHHHHHHHHCCceE
Confidence            998643 234678899999999999875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.95  E-value=2.1e-28  Score=192.24  Aligned_cols=179  Identities=19%  Similarity=0.217  Sum_probs=153.1

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..++.++++|++++|+        +..+|+.+++||. |+...+.+.|++++.+++++.++++++|||||||+|.++.
T Consensus        10 ~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~   88 (262)
T 2cmg_A           10 YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAH   88 (262)
T ss_dssp             TEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEESSCCHHHHH
T ss_pred             CceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEEeCCcCHHHH
Confidence            567889999999999998        5568999999999 9888899999999999887767788999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++. + .+++++|+|+++++.|+++++.+..++..++++++.+|+.+++    ++||+|++|.+.     +    ..+
T Consensus        89 ~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~d-----p----~~~  153 (262)
T 2cmg_A           89 QLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEP-----D----IHR  153 (262)
T ss_dssp             HHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSCC-----C----HHH
T ss_pred             HHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCCC-----h----HHH
Confidence            99988 6 8999999999999999998764211223578999999998754    689999999642     2    348


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||+++++..+++...+.+..+.+.+++.|+++.
T Consensus       154 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~  196 (262)
T 2cmg_A          154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAM  196 (262)
T ss_dssp             HHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceE
Confidence            9999999999999999987887777788889999999999864

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.77  E-value=6.6e-19  Score=138.08  Aligned_cols=109  Identities=12%  Similarity=0.157  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .+++.+|||||||+|..+..+++..  +..++++||+++.|++.|++++...+   ...+++++++|+.+. +  .++||
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~~~-~--~~~~d  141 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI-A--IENAS  141 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTTTC-C--CCSEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccccc-c--ccccc
Confidence            4567899999999999999988753  45699999999999999999875421   235899999998653 2  36799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+++...++.++..  ...++++++++|||||.|++..
T Consensus       142 ~v~~~~~l~~~~~~~--~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          142 MVVLNFTLQFLEPSE--RQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeeeeecCchh--HhHHHHHHHHHcCCCcEEEEEe
Confidence            999988776654331  2568999999999999999864

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.77  E-value=1.3e-18  Score=134.46  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      +++.+|||||||+|..+..+++..+ .++++||++|.+++.|+++...     ...++.++.+|+.+.... ..++||.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh-----CCCceEEEeehHHhhcccccccCCceE
Confidence            5678999999999999999988755 6899999999999999998765     346789999999876544 46789999


Q ss_pred             EECCCCCCCCCccc-ccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESL-FQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l-~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.|.........+. ..+.++++++|+|||||+|++.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            99876433322222 1267899999999999999874

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.77  E-value=9.9e-18  Score=124.89  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=88.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. +..+++++|+++++++.|++++...    ..++++++++|+.+..... .++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEAL----GLSGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHH----TCSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc----CCCceEEEEccHHHHHhhccCCCccEE
Confidence            45679999999999999987775 3468999999999999999987642    1257999999999876542 5789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~~~  173 (197)
                      +++++.+.....   ..+.++.+.+  +|+|||++++....
T Consensus       118 ~~~~p~~~~~~~---~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          118 LADPPYNVDSAD---VDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             EECCCTTSCHHH---HHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EECCCCCcchhh---HHHHHHHHHhcCccCCCeEEEEEecC
Confidence            999986553111   2678899998  99999999998643

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.75  E-value=9.7e-18  Score=128.12  Aligned_cols=125  Identities=15%  Similarity=0.157  Sum_probs=97.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I  134 (197)
                      ...+|||||||+|.++..+++..+...+++||+++.+++.|+++....    ...+++++++|+.+.++.  ..++||.|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~----~l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE----GLSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT----TCSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh----CCCcEEEEECCHHHHHHHHcCCCChheE
Confidence            456999999999999999998777789999999999999999886532    235799999999987653  46799999


Q ss_pred             EECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         135 ITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      +++.+.++...    ..+..+.+++.+.++|||||++++.+..    ......+...+.
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~----~~~~~~~~~~~~  164 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW----EPYAEHMLEVMS  164 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC----HHHHHHHHHHHH
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHHHHHHH
Confidence            99877666432    2234467999999999999999997754    233444444444

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.73  E-value=6.9e-17  Score=122.82  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=90.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~  135 (197)
                      ++.+|||||||+|.++..+++..+..++++||+++.+++.|+++....    ..++++++++|+.+... ...++||.|+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~----~~~nv~~~~~d~~~l~~~~~~~~~d~v~  113 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS----EAQNVKLLNIDADTLTDVFEPGEVKRVY  113 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS----CCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc----CCCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence            456999999999999999988767689999999999999999886542    23579999999987432 2356899999


Q ss_pred             ECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++.+.++...    ..+....+++++.++|||||.+++.+..
T Consensus       114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9877665422    2233478999999999999999997643

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=1.1e-17  Score=130.92  Aligned_cols=132  Identities=15%  Similarity=0.167  Sum_probs=95.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEEcchHHHHh------hcC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHVGDGFRFMS------EHQ  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~d~~~~~~------~~~  128 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++.... .+ -..+++++++|+.+..+      ...
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhhhhhhhccCC
Confidence            45679999999999999999887666899999999999999999986410 01 12369999999987643      125


Q ss_pred             CceeEEEECCCCCCCCC--------------cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCC
Q psy4592         129 QEFDVIITDSSDPVGPA--------------ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP  193 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~--------------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~  193 (197)
                      ++||+|++|+|......              .......+++.+.++|||||.+++...     .+.+..+...+++.|.
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~l~~~~~  187 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR-----PQSVAEIIAACGSRFG  187 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC-----GGGHHHHHHHHTTTEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc-----HHHHHHHHHHHHhcCC
Confidence            68999999987644310              001126789999999999999988542     2345556666655443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.72  E-value=4.9e-17  Score=120.51  Aligned_cols=112  Identities=10%  Similarity=0.063  Sum_probs=82.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++.  ..+++++|+++++++.|++++...    ..++++++++|+.+......++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDL----GIENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHH----TCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            45679999999999999999987  379999999999999999987642    125799999887664333457899999


Q ss_pred             ECCC-CCCCCCcc----cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSS-DPVGPAES----LFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~-~~~~~~~~----l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++. .+......    -.....++++.++|||||.+++....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            9843 22211000    01246789999999999999987654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.72  E-value=1.4e-17  Score=130.29  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +...+|||||||+|.++..++...  .+|+++|+|+.|++.|++          .++++++++|+.+ ++..+++||+|+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~-~~~~~~sfD~v~  104 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAED-TGLPPASVDVAI  104 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTC-CCCCSSCEEEEE
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhh-hcccCCcccEEE
Confidence            445699999999999999998775  689999999999987643          2579999999876 345568999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH  187 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  187 (197)
                      +....|+.. .    +.++++++|+|||||+|++.........+.+..+++.
T Consensus       105 ~~~~~h~~~-~----~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~  151 (257)
T 4hg2_A          105 AAQAMHWFD-L----DRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDR  151 (257)
T ss_dssp             ECSCCTTCC-H----HHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHH
T ss_pred             EeeehhHhh-H----HHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHH
Confidence            988877763 2    6799999999999999988765433323444444443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.72  E-value=7.7e-17  Score=122.38  Aligned_cols=127  Identities=16%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I  134 (197)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|+++....    ..++++++++|+.+... ...++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc----CCCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            3457999999999999999988777689999999999999999987542    22589999999887322 235689999


Q ss_pred             EECCCCCCCCCc----ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAE----SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~~----~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++++.++....    .+....+++++.++|+|||.+++.+..    ......+.+.+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~  171 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN----RGLFEYSLVSFSQ  171 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC----HHHHHHHHHHHHH
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHHHHHHHH
Confidence            999877653211    123478999999999999999997643    2333444444443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.72  E-value=1.5e-16  Score=116.81  Aligned_cols=120  Identities=19%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...  + ...++ ++.+|+.+.++...++||+|+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~-~~~~d~~~~~~~~~~~~D~i~   99 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL--G-VSDRI-AVQQGAPRAFDDVPDNPDVIF   99 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--T-CTTSE-EEECCTTGGGGGCCSCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--C-CCCCE-EEecchHhhhhccCCCCCEEE
Confidence            4567999999999999999998876689999999999999999987642  1 12378 888998765554347899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++...+.        ..+++++.++|||||.+++....    .+........+++.
T Consensus       100 ~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~~~~~  143 (178)
T 3hm2_A          100 IGGGLTA--------PGVFAAAWKRLPVGGRLVANAVT----VESEQMLWALRKQF  143 (178)
T ss_dssp             ECC-TTC--------TTHHHHHHHTCCTTCEEEEEECS----HHHHHHHHHHHHHH
T ss_pred             ECCcccH--------HHHHHHHHHhcCCCCEEEEEeec----cccHHHHHHHHHHc
Confidence            9886544        35889999999999999986543    24444444555443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.71  E-value=2e-17  Score=124.78  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=78.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...     ..+++++++|+.+.++.   ..++||
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF-----GAVVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh-----CCceEEEEcchHhhhhhhhhccCccc
Confidence            4567999999999999999998766679999999999999999987652     12788999999885543   237899


Q ss_pred             EEEECCCCCCCCCccc-----c-----------------cHHHHHHHHhhcCCCcE-EEEEcCCCCcChhHHHHHHHHHH
Q psy4592         133 VIITDSSDPVGPAESL-----F-----------------QASYFELMSRALRPGGI-VCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l-----~-----------------~~~~~~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      +|++|+|.+.......     .                 -..+++++.++|||||+ +++...  ....+.+...+..++
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~~  181 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG--HNQADEVARLFAPWR  181 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT--TSCHHHHHHHTGGGG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC--CccHHHHHHHHHHhh
Confidence            9999998644321100     0                 05688889999999999 666442  233344444444333


Q ss_pred             hhCCcc
Q psy4592         190 SVFPRL  195 (197)
Q Consensus       190 ~~f~~v  195 (197)
                      ..|..+
T Consensus       182 ~gf~~~  187 (215)
T 4dzr_A          182 ERGFRV  187 (215)
T ss_dssp             GGTEEC
T ss_pred             cCCceE
Confidence            335433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.71  E-value=7.8e-17  Score=124.41  Aligned_cols=118  Identities=13%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCCCCCeEEEEcchHHHHh--hcCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLSDPRLTVHVGDGFRFMS--EHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~d~~~~~~--~~~~~~  131 (197)
                      .++.+|||||||+|.++..+++..+...+++||+++.+++.|++++....  ......+++++++|+.+.++  ...++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34568999999999999999987777899999999999999987643100  00023589999999987454  245789


Q ss_pred             eEEEECCCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         132 DVIITDSSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       132 D~I~~~~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |.|+++.+.++..    ...+....+++++.++|||||.|++.+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            9999987765532    12233468999999999999999997644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.70  E-value=8.2e-17  Score=121.21  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++++++.|++++...    ..++++++.+|+.+.+.. .++||+|+
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~~D~i~  113 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF----VARNVTLVEAFAPEGLDD-LPDPDRVF  113 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH----TCTTEEEEECCTTTTCTT-SCCCSEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeCChhhhhhc-CCCCCEEE
Confidence            5667999999999999999998776789999999999999999987542    225799999998664443 36799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++...+   .    ...+++++.++|||||.+++....    .+....+.+.+++.
T Consensus       114 ~~~~~~---~----~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~  158 (204)
T 3e05_A          114 IGGSGG---M----LEEIIDAVDRRLKSEGVIVLNAVT----LDTLTKAVEFLEDH  158 (204)
T ss_dssp             ESCCTT---C----HHHHHHHHHHHCCTTCEEEEEECB----HHHHHHHHHHHHHT
T ss_pred             ECCCCc---C----HHHHHHHHHHhcCCCeEEEEEecc----cccHHHHHHHHHHC
Confidence            988653   1    278999999999999999996433    34555555555544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.70  E-value=7.2e-17  Score=119.71  Aligned_cols=128  Identities=18%  Similarity=0.238  Sum_probs=95.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++.+++.+++++...  +....+++++.+|+.+...  .++||+|+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~--~~~~D~v~  124 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLN--NLDNYDIRVVHSDLYENVK--DRKYNKII  124 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHT--TCTTSCEEEEECSTTTTCT--TSCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECchhcccc--cCCceEEE
Confidence            46679999999999999998877  379999999999999999987542  1111149999999876433  46899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++++.++....   ...+++++.++|+|||.+++.....    .....+.+.+++.|..+.
T Consensus       125 ~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~~~~~~~  178 (194)
T 1dus_A          125 TNPPIRAGKEV---LHRIIEEGKELLKDNGEIWVVIQTK----QGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ECCCSTTCHHH---HHHHHHHHHHHEEEEEEEEEEEEST----HHHHHHHHHHHHHHSCCE
T ss_pred             ECCCcccchhH---HHHHHHHHHHHcCCCCEEEEEECCC----CChHHHHHHHHHHhcceE
Confidence            99876643211   2679999999999999999976442    334445566666665543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.70  E-value=3.6e-17  Score=125.21  Aligned_cols=103  Identities=14%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             CeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~  136 (197)
                      .+|||||||+|..+..+++.. +..+++++|+++++++.|++++...  ++..++++++++|+.+.++.. .++||+|++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--GYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT--TCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            499999999999999998753 3579999999999999999987652  222258999999999887654 579999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....   .    ...+++.+.++|||||++++.
T Consensus       136 d~~~~---~----~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          136 QVSPM---D----LKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CCCTT---T----HHHHHHHHHHHEEEEEEEEET
T ss_pred             cCcHH---H----HHHHHHHHHHHcCCCcEEEEe
Confidence            87421   1    167999999999999999984

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.70  E-value=1.2e-16  Score=124.88  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      ++.+|||+|||+|.++..+++..+ .+++++|+++.+++.|++++...  ++ ..+++++++|+.+.... ..++||+|+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~--~~-~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYN--QL-EDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHT--TC-TTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHC--CC-cccEEEEECcHHHhhhhhccCCccEEE
Confidence            567999999999999999998865 49999999999999999987642  11 24799999999886542 257899999


Q ss_pred             ECCCCCCCCCcc----------------cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAES----------------LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~----------------l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|........                .....+++.+.++|||||++++..
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            999864320000                011469999999999999999853

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.69  E-value=7.8e-17  Score=123.99  Aligned_cols=105  Identities=17%  Similarity=0.310  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I  134 (197)
                      .++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++...  + ..++++++.+|+.+.++ ...++||+|
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--H-FENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--T-CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCcEEEEECCHHHHHHhhccCCccEE
Confidence            3567999999999999999998666689999999999999999987642  1 12489999999988766 445789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++....   .    ...+++.+.++|||||++++.
T Consensus       147 ~~~~~~~---~----~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKA---Q----SKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSS---S----HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEcCcHH---H----HHHHHHHHHHhcCCCeEEEEe
Confidence            9986421   1    267999999999999999884

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.69  E-value=7.6e-17  Score=126.23  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++. +..+++++|+++.+++.|++++...  + ..++++++++|+.+. +...++||+|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~~~~~fD~i~  119 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS--G-LQNRVTGIVGSMDDL-PFRNEELDLIW  119 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc--C-CCcCcEEEEcChhhC-CCCCCCEEEEE
Confidence            45689999999999999999988 5579999999999999999886542  1 235799999998653 33457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....++. +.    ..+++++.++|||||++++...
T Consensus       120 ~~~~~~~~-~~----~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          120 SEGAIYNI-GF----ERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             ESSCGGGT-CH----HHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EcCCceec-CH----HHHHHHHHHHcCCCCEEEEEEe
Confidence            98876555 32    7899999999999999998753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.69  E-value=1.9e-16  Score=123.11  Aligned_cols=106  Identities=22%  Similarity=0.351  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC--Ccee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ--QEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~D  132 (197)
                      .++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  + ..++++++.+|+.+.++...  ++||
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--g-~~~~v~~~~~d~~~~l~~~~~~~~fD  138 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA--G-VDQRVTLREGPALQSLESLGECPAFD  138 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT--T-CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence            3567999999999999999998765 689999999999999999987542  1 12489999999998777543  4899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+++...   ..    ...+++.+.++|||||++++..
T Consensus       139 ~V~~d~~~---~~----~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          139 LIFIDADK---PN----NPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EEEECSCG---GG----HHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEECCch---HH----HHHHHHHHHHhcCCCeEEEEeC
Confidence            99998741   11    2679999999999999999863

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.69  E-value=2.2e-17  Score=124.67  Aligned_cols=111  Identities=12%  Similarity=0.063  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC----C----CCCCCeEEEEcchHHHHhhc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV----G----LSDPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~~d~~~~~~~~  127 (197)
                      +++.+|||+|||+|..+..+++.+  .+|++||+|+.|++.|+++......    +    ...++++++++|+.+.....
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            466799999999999999988763  6999999999999999987542000    0    01357999999987643221


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .++||+|++....++.+...  ...++++++++|||||++++.
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~--~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADM--RERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHH--HHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCCEEEEEECcchhhCCHHH--HHHHHHHHHHHcCCCcEEEEE
Confidence            26899999877655443221  256899999999999984433

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.69  E-value=1.1e-16  Score=124.27  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..+ .+++++|+++.+++.+++++...  + ...+++++++|+.+ ++...++||+|+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~-~~~~~~~fD~v~  119 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKA--N-CADRVKGITGSMDN-LPFQNEELDLIW  119 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEECCTTS-CSSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHc--C-CCCceEEEECChhh-CCCCCCCEEEEE
Confidence            4557999999999999999998765 49999999999999999886542  1 12469999999855 333457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++...++. +.    ..+++++.++|||||++++..
T Consensus       120 ~~~~l~~~-~~----~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYNI-GF----ERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCCC-CH----HHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecChHhhc-CH----HHHHHHHHHHcCCCcEEEEEE
Confidence            99877665 32    789999999999999999875

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.68  E-value=8.3e-17  Score=121.28  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=85.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCc-eeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQE-FDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~-~D~I  134 (197)
                      ++.+|||+|||+|.++..++.... .+++++|+|+++++.|++++...  ++..++++++++|+.++++. ..++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL--KCSSEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT--TCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHh--CCCccceEEEECCHHHHHHhhccCCCCCEE
Confidence            457999999999999998776643 68999999999999999987642  11115899999999886543 2468 9999


Q ss_pred             EECCCCCCCCCcccccHHHHHHH--HhhcCCCcEEEEEcCCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELM--SRALRPGGIVCSQAGTL  174 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~--~~~LkpgG~l~~~~~~~  174 (197)
                      +++++.+.. .    ..++++.+  .++|+|||.+++.....
T Consensus       130 ~~~~~~~~~-~----~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          130 FLDPPFHFN-L----AEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EECCCSSSC-H----HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EECCCCCCc-c----HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            999984421 1    25678888  67899999999876543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.68  E-value=5.2e-17  Score=124.35  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+||| +|.++..+++.. ..+++++|+++.+++.|++++...     ..+++++++|+........++||+|
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN-----NSNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT-----TCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh-----CCCcEEEeCCchhhhhcccCceeEE
Confidence            466899999999 999999988764 379999999999999999987652     2279999999643323334789999


Q ss_pred             EECCCCCCCCCccc---------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESL---------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l---------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +++++.+.......               ....+++++.++|||||.+++.....   ......+.+.+++.
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~l~~~  196 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK---EKLLNVIKERGIKL  196 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC---HHHHHHHHHHHHHT
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc---HhHHHHHHHHHHHc
Confidence            99998654322110               01678999999999999999865331   24455555555544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.68  E-value=1.2e-16  Score=123.01  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I  134 (197)
                      .++.+|||||||+|.++..+++... .+++++|+++.+++.|+++...     ...+++++++|+.+... ...++||+|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHh-----cCCCeEEEecCHHHhhcccCCCceEEE
Confidence            4567999999999999999876543 5999999999999999998764     23579999999988543 345789999


Q ss_pred             EECCCCCCCCCcccc-cHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLF-QASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~-~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++......+..+.. .+.++++++++|||||+|++.
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            995332121111111 146799999999999999874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.68  E-value=1.3e-16  Score=120.69  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  + ..++++++++|+.+ ++...++||+|++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~-~~~~~~~~D~v~~  117 (219)
T 3dlc_A           43 TAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA--N-LNDRIQIVQGDVHN-IPIEDNYADLIVS  117 (219)
T ss_dssp             CEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEECBTTB-CSSCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc--c-ccCceEEEEcCHHH-CCCCcccccEEEE
Confidence            3349999999999999998877 4479999999999999999986542  1 23589999999866 2334578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +...++.++.    ..++++++++|||||.+++..
T Consensus       118 ~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          118 RGSVFFWEDV----ATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             ESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CchHhhccCH----HHHHHHHHHhCCCCCEEEEEe
Confidence            8877665444    789999999999999999864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.68  E-value=2.1e-16  Score=119.11  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=84.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++... .+++++|+++.+++.|++++...    ..++++++++|+.++++...++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL----KAGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT----TCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            457999999999999998776643 59999999999999999987642    1258999999998877655578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~~~  173 (197)
                      +++.+.. .    ..++++.+.+  +|+|||++++....
T Consensus       129 ~~p~~~~-~----~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          129 DPPFRRG-L----LEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             CCSSSTT-T----HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CCCCCCC-c----HHHHHHHHHhcCccCCCcEEEEEECC
Confidence            9985422 1    2567777765  59999999987643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.68  E-value=2.1e-16  Score=120.58  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC-----C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ-----Q  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~  129 (197)
                      .++.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++...  + ..++++++++|+.+.++...     +
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~l~~~~~~~~~~  133 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA--G-LQDKVTILNGASQDLIPQLKKKYDVD  133 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--T-CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc--C-CCCceEEEECCHHHHHHHHHHhcCCC
Confidence            356799999999999999999854 3579999999999999999987542  1 12479999999988766533     6


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +||+|+++...+....    ..++++.+ ++|||||++++..
T Consensus       134 ~fD~V~~d~~~~~~~~----~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          134 TLDMVFLDHWKDRYLP----DTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             CCSEEEECSCGGGHHH----HHHHHHHT-TCCCTTCEEEESC
T ss_pred             ceEEEEEcCCcccchH----HHHHHHhc-cccCCCeEEEEeC
Confidence            8999999875332211    13566667 9999999999854

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.67  E-value=1.4e-16  Score=124.21  Aligned_cols=111  Identities=14%  Similarity=0.007  Sum_probs=83.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC-------C-CC-----CCCCCeEEEEcchHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM-------A-VG-----LSDPRLTVHVGDGFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-------~-~~-----~~~~~~~~~~~d~~~  122 (197)
                      .++.+|||+|||+|..+..+++.+  .+|++||+|+.+++.|++.....       . ++     -...+++++++|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            356799999999999999998874  69999999999999998765310       0 00     013589999999987


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ......++||+|++....+..+...  ...+++++.++|||||++++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~--~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGD--HDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGG--HHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHH--HHHHHHHHHHHcCCCeEEEEE
Confidence            4332237999999987765554321  267999999999999998643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.67  E-value=2.8e-16  Score=120.46  Aligned_cols=106  Identities=15%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++..      ..+++++++|+.+.. . .++||+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~-~-~~~fD~v~  114 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG------NLKVKYIEADYSKYD-F-EEKYDMVV  114 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS------CTTEEEEESCTTTCC-C-CSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc------CCCEEEEeCchhccC-C-CCCceEEE
Confidence            456899999999999999998876668999999999999999998764      238999999987632 2 27899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++..  ...++++++++|||||.+++..
T Consensus       115 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHHLEDED--KKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCccccCCHHH--HHHHHHHHHHhcCCCcEEEEEE
Confidence            998766654331  1358999999999999999865

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.67  E-value=3.7e-16  Score=119.14  Aligned_cols=106  Identities=17%  Similarity=0.292  Sum_probs=85.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc----CCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH----QQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~  130 (197)
                      .++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  + ..++++++++|+.+.++..    .++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA--N-LNDRVEVRTGLALDSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            3567999999999999999998765 579999999999999999987642  1 2246999999998865541    267


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ||+|+++.+.+       ....+++.+.++|+|||++++..
T Consensus       134 fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          134 FDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             cCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeC
Confidence            99999987521       12679999999999999998853

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.67  E-value=7.6e-16  Score=116.32  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++++++.|+++....  + ...+++++.+|+.+.++. .++||+|+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~--g-~~~~v~~~~~d~~~~~~~-~~~~D~v~  127 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTY--G-LSPRMRAVQGTAPAALAD-LPLPEAVF  127 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEESCTTGGGTT-SCCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc--C-CCCCEEEEeCchhhhccc-CCCCCEEE
Confidence            45679999999999999999887  379999999999999999987542  1 123799999998875443 35799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++...    +    .+ +++++.+.|||||++++....    .+.+..+.+.+++.
T Consensus       128 ~~~~~----~----~~-~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~  170 (204)
T 3njr_A          128 IGGGG----S----QA-LYDRLWEWLAPGTRIVANAVT----LESETLLTQLHARH  170 (204)
T ss_dssp             ECSCC----C----HH-HHHHHHHHSCTTCEEEEEECS----HHHHHHHHHHHHHH
T ss_pred             ECCcc----c----HH-HHHHHHHhcCCCcEEEEEecC----cccHHHHHHHHHhC
Confidence            87732    1    24 999999999999999997644    45566666666544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.67  E-value=2e-16  Score=118.32  Aligned_cols=115  Identities=13%  Similarity=0.088  Sum_probs=87.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...  + ..++++++++|+.+......++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL--N-LIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT--T-CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCCeEEEECCHHHHhhhccCCceEE
Confidence            456799999999999999988763 4469999999999999999987642  1 12589999999877654445789999


Q ss_pred             EECCCC-CCCCCccc----ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSD-PVGPAESL----FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~-~~~~~~~l----~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++++. +.......    ...++++++.++|||||++++....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            999764 21111000    1246999999999999999987643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.67  E-value=3.1e-16  Score=121.92  Aligned_cols=105  Identities=15%  Similarity=0.254  Sum_probs=85.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------Q  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~  128 (197)
                      .++++|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      .
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GV-DHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCCeEEEECCHHHHHHHHHhccCCC
Confidence            3567999999999999999887644 579999999999999999987642  12 257999999998876542      4


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++||+|+++...   ..    ...+++.+.++|||||++++.
T Consensus       155 ~~fD~V~~d~~~---~~----~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          155 GSYDFIFVDADK---DN----YLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TCBSEEEECSCS---TT----HHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCEEEEEEcCch---HH----HHHHHHHHHHhCCCCeEEEEe
Confidence            789999998742   11    277999999999999999875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.67  E-value=1.2e-16  Score=117.59  Aligned_cols=109  Identities=19%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++ .++++++.+|+.+.++...++||+|+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT--KA-ENRFTLLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT--TC-GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc--CC-CCceEEEECcHHHhHHhhcCCCCEEE
Confidence            45679999999999999988877 4479999999999999999987642  11 24799999999987665557899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~~  173 (197)
                      ++++.+..     ...+.++.+.  ++|+|||++++....
T Consensus       106 ~~~~~~~~-----~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          106 LDPPYAKE-----TIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             ECCSSHHH-----HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ECCCCCcc-----hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            99864211     1256777776  999999999997644

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.67  E-value=1.8e-16  Score=123.58  Aligned_cols=105  Identities=19%  Similarity=0.313  Sum_probs=86.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.|++++...    ..++++++.+|+.+ ++..+++||+|+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~----~~~~v~~~~~d~~~-l~~~~~~fD~V~  108 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQ-MPFTDERFHIVT  108 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-C-CCSCTTCEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEecHHh-CCCCCCCEEEEE
Confidence            466799999999999999988775  49999999999999999876431    22479999999876 344457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus       109 ~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          109 CRIAAHHFPNP----ASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EhhhhHhcCCH----HHHHHHHHHHcCCCCEEEEEE
Confidence            99877776654    789999999999999999853

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.67  E-value=4e-16  Score=118.47  Aligned_cols=111  Identities=16%  Similarity=0.214  Sum_probs=86.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC---CCCeEEEEcchHHHHhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS---DPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...  ++.   .++++++++|+.. .+...++||
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~-~~~~~~~fD  104 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL--RLPRNQWERLQLIQGALTY-QDKRFHGYD  104 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC--CCCHHHHTTEEEEECCTTS-CCGGGCSCS
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh--cCCcccCcceEEEeCCccc-ccccCCCcC
Confidence            4567999999999999999998776679999999999999999987642  111   1279999999743 233347899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|++....++.+++.  ...+++++.++|||||++++..
T Consensus       105 ~v~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          105 AATVIEVIEHLDLSR--LGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEEEESCGGGCCHHH--HHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEeeHHHHHcCCHHH--HHHHHHHHHHHcCCCEEEEEcc
Confidence            999988766554322  1579999999999999887754

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.66  E-value=4.1e-16  Score=122.92  Aligned_cols=110  Identities=16%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++....    ..++++++++|+.+.++  .++||+|+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~----~~~~v~~~~~d~~~~~~--~~~fD~Iv  181 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL----AIKNIHILQSDWFSALA--GQQFAMIV  181 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH----TCCSEEEECCSTTGGGT--TCCEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCceEEEEcchhhhcc--cCCccEEE
Confidence            3457999999999999999987656689999999999999999987542    22479999999876432  46899999


Q ss_pred             ECCCCCCCCC-------------ccc--------ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPA-------------ESL--------FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~-------------~~l--------~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++|......             ..+        ....+++.+.+.|+|||++++..
T Consensus       182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9988643311             111        12678899999999999999974

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.66  E-value=2.9e-16  Score=119.78  Aligned_cols=104  Identities=19%  Similarity=0.304  Sum_probs=84.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC-----Cc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ-----QE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~  130 (197)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...  + ..++++++++|+.+.++...     ++
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA--G-LSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC--C-CCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            567999999999999999998754 589999999999999999987542  1 12469999999988765422     78


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ||+|+++.+.   ..    ...+++.+.++|||||++++.
T Consensus       141 fD~v~~~~~~---~~----~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          141 YDLIYIDADK---AN----TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEEEEECSCG---GG----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCH---HH----HHHHHHHHHHhcCCCcEEEEe
Confidence            9999988741   11    267999999999999999885

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.66  E-value=3.3e-16  Score=123.69  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=88.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||||||+|.++..+++..  .+++++|+++.+++.|++++...  + ..++++++++|+.+......++||+|+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERG--HQVILCDLSAQMIDRAKQAAEAK--G-VSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC---C-CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--C-CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            346799999999999999998873  69999999999999999987542  1 125899999999876544568999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..+++++.++|||||++++..
T Consensus       142 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          142 FHAVLEWVADP----RSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECchhhcccCH----HHHHHHHHHHcCCCeEEEEEE
Confidence            98877666554    789999999999999999865

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.66  E-value=3.5e-16  Score=123.81  Aligned_cols=102  Identities=20%  Similarity=0.316  Sum_probs=81.8

Q ss_pred             CCCCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++.+|||||||+|.++.. +++. +.++|+++|+++++++.|++++...  ++  .+++++++|+.++ +  .++||+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~--gl--~~v~~v~gDa~~l-~--d~~FDv  191 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGL--GV--DGVNVITGDETVI-D--GLEFDV  191 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHH--TC--CSEEEEESCGGGG-G--GCCCSE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhc--CC--CCeEEEECchhhC-C--CCCcCE
Confidence            46778999999999877644 4444 3489999999999999999987643  22  5899999999874 3  478999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++..   .++.    .++++++.++|||||++++..
T Consensus       192 V~~~a~---~~d~----~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          192 LMVAAL---AEPK----RRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEECTT---CSCH----HHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEECCC---ccCH----HHHHHHHHHHcCCCcEEEEEc
Confidence            998664   2222    689999999999999999875

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=1.6e-16  Score=120.47  Aligned_cols=105  Identities=15%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++..      .++++++++|+.+..  ..++||+|+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~--~~~~fD~v~  119 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQFS--TAELFDLIV  119 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTCC--CSCCEEEEE
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhCC--CCCCccEEE
Confidence            445799999999999999998774  6999999999999999998764      248999999987654  357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.... ..+++++.++|||||.+++..
T Consensus       120 ~~~~l~~~~~~~~~-~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          120 VAEVLYYLEDMTQM-RTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             EESCGGGSSSHHHH-HHHHHHHHHTEEEEEEEEEEE
T ss_pred             EccHHHhCCCHHHH-HHHHHHHHHHcCCCCEEEEEe
Confidence            99877666543111 467999999999999999864

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.66  E-value=7e-16  Score=118.72  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||||||+|.++..+++..  .+++++|+++.+++.|+++..       . +++++++|+.+.  ..+++||+|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-------~-~v~~~~~d~~~~--~~~~~fD~v~~  109 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK-------D-GITYIHSRFEDA--QLPRRYDNIVL  109 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC-------S-CEEEEESCGGGC--CCSSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh-------C-CeEEEEccHHHc--CcCCcccEEEE
Confidence            55799999999999999998775  489999999999999999864       2 799999998775  23578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHH-hhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMS-RALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~-~~LkpgG~l~~~~~~  173 (197)
                      ....++.+++    ..++++++ ++|||||.+++....
T Consensus       110 ~~~l~~~~~~----~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          110 THVLEHIDDP----VALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             ESCGGGCSSH----HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             hhHHHhhcCH----HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            8877666554    78999999 999999999997643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.66  E-value=6.8e-16  Score=117.17  Aligned_cols=104  Identities=14%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~  133 (197)
                      +++.+|||+|||+|.++..+++..+..+++++|+++.+++.+.+....      ..++.++.+|+.+...  ...++||+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchhhcccccceeE
Confidence            456799999999999999888765456999999999887655443321      1368888899865311  11378999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++...+   ..   ...++++++++|||||.+++..
T Consensus       130 V~~~~~~~---~~---~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          130 IYQDIAQK---NQ---IEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEECCCST---TH---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccCh---hH---HHHHHHHHHHHhCCCCEEEEEE
Confidence            99985321   11   1346899999999999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.66  E-value=7.2e-16  Score=117.10  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC---CCCeEEEEcchHHHHhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS---DPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...  ++.   .++++++++|+.. .+...++||
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~-~~~~~~~fD  104 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID--RLPEMQRKRISLFQSSLVY-RDKRFSGYD  104 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG--GSCHHHHTTEEEEECCSSS-CCGGGTTCS
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh--ccccccCcceEEEeCcccc-cccccCCCC
Confidence            4567999999999999999998776679999999999999999987542  111   1279999999743 333357899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +|++....++.+++.  ...+++++.++|||||+++...+
T Consensus       105 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A          105 AATVIEVIEHLDENR--LQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             EEEEESCGGGCCHHH--HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EEEEHHHHHhCCHHH--HHHHHHHHHHhhCCCEEEEEccc
Confidence            999987765554322  15799999999999997776543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.66  E-value=3.7e-16  Score=115.61  Aligned_cols=110  Identities=17%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  + ..++++++++|+.+..+.   ..++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAIT--K-EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHH--T-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHh--C-CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            35679999999999999988775 3469999999999999999987542  1 124799999999886542   257899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHH--HhhcCCCcEEEEEcCCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELM--SRALRPGGIVCSQAGTL  174 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~--~~~LkpgG~l~~~~~~~  174 (197)
                      +|+++++.+.. .    ....++.+  .++|+|||.+++.....
T Consensus       119 ~i~~~~~~~~~-~----~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          119 LVLLDPPYAKQ-E----IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             EEEECCCGGGC-C----HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             EEEECCCCCch-h----HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            99999874321 1    25666777  88999999999876543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.65  E-value=6.2e-16  Score=119.98  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++... .+++++|+++.+++.++++..       ..+++++++|+.+ ++...++||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~v~  113 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIED-IAIEPDAYNVVL  113 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGG-CCCCTTCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhh-CCCCCCCeEEEE
Confidence            4668999999999999999988754 499999999999999999874       3589999999875 333457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++..+.    ..++++++++|||||.+++..
T Consensus       114 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          114 SSLALHYIASF----DDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EchhhhhhhhH----HHHHHHHHHHcCCCcEEEEEe
Confidence            98876665443    789999999999999999974

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.2e-16  Score=125.67  Aligned_cols=108  Identities=14%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ------  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------  128 (197)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++.... + ..++++++++|+.+. +...      
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~~~v~~~~~d~~~~-~~~~~~~~~~  111 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-D-TYKNVSFKISSSDDF-KFLGADSVDK  111 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCC-GGGCTTTTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-C-CCCceEEEEcCHHhC-CccccccccC
Confidence            466899999999999999998642 55899999999999999999865310 0 246899999998763 3334      


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++||+|++....++. +.    ..+++++.++|||||.+++..
T Consensus       112 ~~fD~V~~~~~l~~~-~~----~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          112 QKIDMITAVECAHWF-DF----EKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             SCEEEEEEESCGGGS-CH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh-CH----HHHHHHHHHhcCCCcEEEEEe
Confidence            689999999877666 43    789999999999999998843

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.65  E-value=4.8e-16  Score=122.92  Aligned_cols=107  Identities=10%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++++..     .+.+++++++|+.++ +. .++||+|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~~~-~~-~~~fD~v   93 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-----LPYDSEFLEGDATEI-EL-NDKYDIA   93 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-----SSSEEEEEESCTTTC-CC-SSCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-----cCCceEEEEcchhhc-Cc-CCCeeEE
Confidence            4668999999999999999998765 37999999999999999998764     234899999998763 33 4689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++....++.++.    ..++++++++|||||++++....
T Consensus        94 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           94 ICHAFLLHMTTP----ETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEESCGGGCSSH----HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECChhhcCCCH----HHHHHHHHHHcCCCCEEEEEecc
Confidence            999877666554    78999999999999999987544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.65  E-value=8e-17  Score=124.85  Aligned_cols=105  Identities=18%  Similarity=0.312  Sum_probs=85.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~  129 (197)
                      .++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++...  + ..++++++++|+.+.++..     .+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g-~~~~i~~~~gda~~~l~~~~~~~~~~  135 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA--K-QEHKIKLRLGPALDTLHSLLNEGGEH  135 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT--T-CTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCcEEEEEcCHHHHHHHHhhccCCC
Confidence            3567999999999999999998653 579999999999999999887642  1 1358999999998877653     47


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||+|+++...   ..    ...+++.+.++|||||++++.
T Consensus       136 ~fD~V~~d~~~---~~----~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          136 QFDFIFIDADK---TN----YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             CEEEEEEESCG---GG----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEeEEEEcCCh---HH----hHHHHHHHHHhcCCCeEEEEE
Confidence            89999998741   11    267899999999999999985

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=2.8e-16  Score=121.93  Aligned_cols=106  Identities=17%  Similarity=0.262  Sum_probs=85.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+ .+++++|+++.+++.|+++....  + ..++++++++|+.+.. . .++||+|+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~-~~~~v~~~~~d~~~~~-~-~~~fD~V~  108 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL--G-VSERVHFIHNDAAGYV-A-NEKCDVAA  108 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEESCCTTCC-C-SSCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhc--C-CCcceEEEECChHhCC-c-CCCCCEEE
Confidence            4567999999999999998887653 68999999999999999886532  1 1247999999987642 3 57899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus       109 ~~~~~~~~~~~----~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          109 CVGATWIAGGF----AGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EESCGGGTSSS----HHHHHHHTTSEEEEEEEEEEE
T ss_pred             ECCChHhcCCH----HHHHHHHHHHcCCCeEEEEec
Confidence            97766555443    789999999999999999864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.65  E-value=3.3e-16  Score=128.62  Aligned_cols=117  Identities=12%  Similarity=0.101  Sum_probs=88.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC-CCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-DPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...  ++. ..+++++.+|+.+.+  ..++||+|
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n--gl~~~~~v~~~~~D~~~~~--~~~~fD~I  296 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN--MPEALDRCEFMINNALSGV--EPFRFNAV  296 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--CGGGGGGEEEEECSTTTTC--CTTCEEEE
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc--CCCcCceEEEEechhhccC--CCCCeeEE
Confidence            3447999999999999999998876789999999999999999987642  111 135888999987633  34689999


Q ss_pred             EECCCCCCCCCc-ccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVGPAE-SLFQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~~~~-~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|++.+..... .-...++++++.++|||||.+++..+....
T Consensus       297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~  339 (375)
T 4dcm_A          297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD  339 (375)
T ss_dssp             EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred             EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcC
Confidence            999998753211 111257899999999999999997655433

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.65  E-value=1.6e-15  Score=125.02  Aligned_cols=128  Identities=14%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      ..+++|||+|||+|.++..+++.. ..+++++|+++.+++.|++++...  ++...+++++++|+.++++.   ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n--~~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN--HLDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT--TCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            355799999999999999998763 358999999999999999987652  22212799999999987654   245899


Q ss_pred             EEEECCCCCCC---CCcccc--cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592         133 VIITDSSDPVG---PAESLF--QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ  186 (197)
Q Consensus       133 ~I~~~~~~~~~---~~~~l~--~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  186 (197)
                      +|++|||....   ......  -.++++.+.++|+|||.+++.+++.....+.+.+.+.
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~  346 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE  346 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHH
Confidence            99999986421   111110  1356788899999999999988777665555555443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.65  E-value=8.6e-16  Score=122.38  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ .+++++|+++++++.|+++....  + ...++++..+|+.++    .++||+|+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~----~~~fD~v~  142 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV--D-SPRRKEVRIQGWEEF----DEPVDRIV  142 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS--C-CSSCEEEEECCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECCHHHc----CCCccEEE
Confidence            5567999999999999999988755 79999999999999999986542  1 124799999998764    57899999


Q ss_pred             ECCCCCCCCCcc-----cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAES-----LFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~-----l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....++.+++.     -....+++++.++|||||.+++....
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            987765554321     11268999999999999999997643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.65  E-value=5e-16  Score=127.80  Aligned_cols=112  Identities=22%  Similarity=0.283  Sum_probs=89.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|+++.+++.|++++...     ..+++++++|+.+.... .++||+|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g--~~V~gvDis~~al~~A~~n~~~~-----~~~v~~~~~D~~~~~~~-~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG--AEVVGVEDDLASVLSLQKGLEAN-----ALKAQALHSDVDEALTE-EARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT--CEEEEEESBHHHHHHHHHHHHHT-----TCCCEEEECSTTTTSCT-TCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc-----CCCeEEEEcchhhcccc-CCCeEEEEE
Confidence            55799999999999999998873  69999999999999999987652     23589999998765332 478999999


Q ss_pred             CCCCCCCCCccc-ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         137 DSSDPVGPAESL-FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       137 ~~~~~~~~~~~l-~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      +++.+....... ....+++++.++|||||.+++..+....
T Consensus       305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~  345 (381)
T 3dmg_A          305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK  345 (381)
T ss_dssp             CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC
T ss_pred             CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC
Confidence            999877432111 1267999999999999999998766443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.65  E-value=4.8e-16  Score=117.57  Aligned_cols=103  Identities=20%  Similarity=0.330  Sum_probs=84.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...  + ..++++++.+|+.+.++...+ ||+|+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~-fD~v~  131 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN--G-LIDRVELQVGDPLGIAAGQRD-IDILF  131 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--S-GGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--C-CCceEEEEEecHHHHhccCCC-CCEEE
Confidence            567999999999999999988754 579999999999999999887532  1 124799999999887665456 99999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++...   ..    ...+++++.++|||||++++.
T Consensus       132 ~~~~~---~~----~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDV---FN----GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTT---SC----HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCCh---hh----hHHHHHHHHHhcCCCeEEEEE
Confidence            98531   11    278999999999999999984

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.64  E-value=1.9e-15  Score=116.12  Aligned_cols=159  Identities=14%  Similarity=0.092  Sum_probs=107.6

Q ss_pred             CCCCcEEEEc-Ce--eeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHH
Q psy4592          21 KEFGTALILD-GI--IQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEV   96 (197)
Q Consensus        21 ~~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~   96 (197)
                      .-||+.++-. +.  ...++..-.....++..+..+..+++.+|||+|||+|..+..+++. ++..+|+++|++++|++.
T Consensus        38 ~vyge~~~~~~~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~  117 (233)
T 4df3_A           38 RVYGERIFRYNGEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD  117 (233)
T ss_dssp             CSSSCCEEEETTEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred             cccCceEEEcCCceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            3488876432 21  2222222111233444444455577899999999999999999875 566799999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ++++...      .+|+..+.+|+.....  ...+++|+|+++.+.+..      ...++.++++.|||||.+++.....
T Consensus       118 l~~~a~~------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~------~~~~l~~~~r~LKpGG~lvI~ik~r  185 (233)
T 4df3_A          118 LLTVVRD------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQ------AAIVVRNARFFLRDGGYMLMAIKAR  185 (233)
T ss_dssp             HHHHSTT------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTTH------HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHhhHh------hcCeeEEEEeccCccccccccceEEEEEEeccCChh------HHHHHHHHHHhccCCCEEEEEEecc
Confidence            9988764      3589999999865322  235789999998764432      2678999999999999999863211


Q ss_pred             -----CcChhHHHHHHHHHHhh
Q psy4592         175 -----WYSLDCVGNTLQHCASV  191 (197)
Q Consensus       175 -----~~~~~~~~~~~~~~~~~  191 (197)
                           ......+++..+.+++.
T Consensus       186 ~~d~~~p~~~~~~~ev~~L~~~  207 (233)
T 4df3_A          186 SIDVTTEPSEVYKREIKTLMDG  207 (233)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHT
T ss_pred             cCCCCCChHHHHHHHHHHHHHC
Confidence                 11234455556666544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.64  E-value=1.2e-15  Score=117.75  Aligned_cols=120  Identities=12%  Similarity=0.097  Sum_probs=89.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I  134 (197)
                      ++.+|||+|||+|..+..++...+..+++++|+++.+++.|+++....    ..++++++++|+.++...  ..++||+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEeccHHHhcccccccCCccEE
Confidence            567999999999999988886445579999999999999999886542    224699999999775321  14689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      ++...    .+    ...+++.+.++|||||.+++..+..  ..+.+..+.+.++.
T Consensus       146 ~~~~~----~~----~~~~l~~~~~~LkpgG~l~~~~g~~--~~~~~~~~~~~l~~  191 (240)
T 1xdz_A          146 TARAV----AR----LSVLSELCLPLVKKNGLFVALKAAS--AEEELNAGKKAITT  191 (240)
T ss_dssp             EEECC----SC----HHHHHHHHGGGEEEEEEEEEEECC---CHHHHHHHHHHHHH
T ss_pred             EEecc----CC----HHHHHHHHHHhcCCCCEEEEEeCCC--chHHHHHHHHHHHH
Confidence            99773    12    2789999999999999999864332  22344444444443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.64  E-value=3.9e-16  Score=122.56  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=89.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++...    ..++++++.+|+.+. +...++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD~v~  110 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN----GIKNVKFLQANIFSL-PFEDSSFDHIF  110 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCGGGC-CSCTTCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEcccccC-CCCCCCeeEEE
Confidence            4567999999999999999988766689999999999999999987542    235799999998763 33467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++...++.++.    ..+++++.++|||||.+++..
T Consensus       111 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFVLEHLQSP----EEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EechhhhcCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence            98887666654    689999999999999999865

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.64  E-value=2.8e-16  Score=114.57  Aligned_cols=104  Identities=20%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~  133 (197)
                      ++.+|||+|||+|.++..+++...  .++++|+++.+++.|++++...    .. +++++++|+.+.++..   .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~----~~-~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT----GL-GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH----TC-CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHc----CC-ceEEEeccHHHHHHhhhccCCceEE
Confidence            567999999999999999988754  4999999999999999987642    12 7899999998865431   348999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~~  173 (197)
                      |+++++.+  ...    ++.++.+.  ++|+|||.+++....
T Consensus       114 i~~~~~~~--~~~----~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          114 AFMAPPYA--MDL----AALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEECCCTT--SCT----THHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEECCCCc--hhH----HHHHHHHHhhcccCCCcEEEEEeCC
Confidence            99999765  221    45677777  999999999987644

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.64  E-value=1e-15  Score=120.60  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=89.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~  131 (197)
                      .++.+|||+|||+|+.+..+++..+. .+++++|+++.+++.+++++...    ..++++++++|+.+....   ..++|
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~~~f  157 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM----GVLNTIIINADMRKYKDYLLKNEIFF  157 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh----CCCcEEEEeCChHhcchhhhhccccC
Confidence            45679999999999999998874333 79999999999999999987643    224899999999876542   25689


Q ss_pred             eEEEECCCCCCCCCc--------------ccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         132 DVIITDSSDPVGPAE--------------SLFQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       132 D~I~~~~~~~~~~~~--------------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      |+|++|+|.......              .-...++++.+.+.|||||.+++.+++...
T Consensus       158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            999999875432100              011267899999999999999998876543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.64  E-value=1.4e-15  Score=118.34  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~  133 (197)
                      ..+.+|||||||+|..+..++...+..+++++|+++.+++.|+++....    ...+++++++|+.++...  ..++||+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~l~~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL----GLKGARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCceEEEECcHHHhhcccccCCCceE
Confidence            4567999999999999998887666689999999999999999987643    224699999999876432  2478999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |++....    +    ...+++.+.++|||||++++..+.
T Consensus       155 I~s~a~~----~----~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          155 AVARAVA----P----LCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             EEEESSC----C----HHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             EEECCcC----C----HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9997631    1    167999999999999999886543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=9.8e-16  Score=118.14  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++...    ..++++++.+|+.+ ++...++||+|+
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~-~~~~~~~fD~v~   92 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK----GVENVRFQQGTAES-LPFPDDSFDIIT   92 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH----TCCSEEEEECBTTB-CCSCTTCEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc----CCCCeEEEeccccc-CCCCCCcEEEEE
Confidence            566899999999999999988775  49999999999999999876532    22479999999865 344457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus        93 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           93 CRYAAHHFSDV----RKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhccCH----HHHHHHHHHHcCCCcEEEEEE
Confidence            98776665544    789999999999999999864

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.64  E-value=5.6e-16  Score=119.67  Aligned_cols=105  Identities=18%  Similarity=0.270  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------Q  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~  128 (197)
                      .++++|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      .
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~-~~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--GV-EHKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEEcCHHHHHHHHHhccCCC
Confidence            4567999999999999999987644 579999999999999999987642  22 347999999998876542      4


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++||+|+++...   ..    ...+++.+.++|+|||++++.
T Consensus       146 ~~fD~I~~d~~~---~~----~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          146 GSYDFGFVDADK---PN----YIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             TCEEEEEECSCG---GG----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCEEEECCch---HH----HHHHHHHHHHhcCCCeEEEEe
Confidence            789999998641   11    278999999999999999985

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.64  E-value=1.8e-15  Score=118.57  Aligned_cols=107  Identities=22%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ .+++++|+++.+++.++++....  + ..++++++.+|+.+ ++...++||+|+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~-~~~~~~~fD~v~  134 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAA--G-LANRVTFSYADAMD-LPFEDASFDAVW  134 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEECCTTS-CCSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHhc--C-CCcceEEEECcccc-CCCCCCCccEEE
Confidence            4567999999999999999887544 79999999999999999876531  1 12479999999876 333457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..+++++.++|||||.+++..
T Consensus       135 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLHHMPDR----GRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTTTSSCH----HHHHHHHHTTEEEEEEEEEEE
T ss_pred             EechhhhCCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence            98877776554    789999999999999999875

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.64  E-value=2e-15  Score=124.55  Aligned_cols=123  Identities=17%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++++|||+|||+|.++..+++.+  ..++++|+|+.+++.|++++...     +...++.++|+.++++...++||+|+
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~n-----g~~~~~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRL-----GLRVDIRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH-----TCCCEEEESCHHHHHHTCCCCEEEEE
T ss_pred             cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHh-----CCCCcEEEccHHHHHHHhcCCCCEEE
Confidence            346899999999999999998874  34999999999999999987652     11235779999998765444599999


Q ss_pred             ECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         136 TDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       136 ~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      +|+|........+.     ..++++.+.++|+|||.+++.++++....+.+...+
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v  340 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVA  340 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHH
Confidence            99986332222111     146888999999999999988888777666555554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=6.7e-16  Score=119.97  Aligned_cols=119  Identities=17%  Similarity=0.208  Sum_probs=92.2

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..++.+|||+|||+|.++..+++. .+..+++++|+++++++.|++++...  + ...+++++.+|+.+.+  ..++||+
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~--~~~~~D~  165 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA--G-FDDRVTIKLKDIYEGI--EEENVDH  165 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH--T-CTTTEEEECSCGGGCC--CCCSEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc--C-CCCceEEEECchhhcc--CCCCcCE
Confidence            356679999999999999999877 55689999999999999999987542  1 1235999999987643  3467999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      |+++++.     +    ..+++++.++|+|||.+++...+    .+....+.+.+++.
T Consensus       166 v~~~~~~-----~----~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~  210 (255)
T 3mb5_A          166 VILDLPQ-----P----ERVVEHAAKALKPGGFFVAYTPC----SNQVMRLHEKLREF  210 (255)
T ss_dssp             EEECSSC-----G----GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHHHHHHHT
T ss_pred             EEECCCC-----H----HHHHHHHHHHcCCCCEEEEEECC----HHHHHHHHHHHHHc
Confidence            9998752     2    35789999999999999987533    35555666666544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.63  E-value=5.3e-16  Score=120.77  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++...     . ++++++++|+.+. +...++||+|+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~~~~~~~d~~~~-~~~~~~fD~v~  125 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG-----N-NKIIFEANDILTK-EFPENNFDLIY  125 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS-----C-TTEEEEECCTTTC-CCCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc-----C-CCeEEEECccccC-CCCCCcEEEEe
Confidence            456799999999999999988764 37999999999999999998764     2 6899999998763 33467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+...  ...+++++.++|||||.+++..
T Consensus       126 ~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          126 SRDAILALSLEN--KNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhcChHH--HHHHHHHHHHHcCCCCEEEEEE
Confidence            987766652211  2789999999999999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=5.7e-16  Score=120.30  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.         ++++++++|+.+..  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~  100 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---------PNTNFGKADLATWK--PAQKADLLY  100 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---------TTSEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------CCcEEEECChhhcC--ccCCcCEEE
Confidence            4567999999999999999887755579999999999999999873         36899999987643  457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++...++.++.    ..++++++++|||||.+++....
T Consensus       101 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A          101 ANAVFQWVPDH----LAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             EESCGGGSTTH----HHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             EeCchhhCCCH----HHHHHHHHHhcCCCeEEEEEeCC
Confidence            98887776554    78999999999999999997643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.63  E-value=1.9e-15  Score=116.52  Aligned_cols=102  Identities=15%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~I  134 (197)
                      +++.+|||||||+|.++..+++..  .+++++|+++.+++.++++            ++++.+|+.+.+ +...++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEG--IESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHT--CCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCC--CcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEE
Confidence            456899999999999999888763  5899999999999998763            678889988865 3346799999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++....++.+++.+  ..++++++++|||||++++....
T Consensus       106 ~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          106 MISHFVEHLDPERL--FELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             EEESCGGGSCGGGH--HHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             EECCchhhCCcHHH--HHHHHHHHHHcCCCcEEEEEeCC
Confidence            99887666543322  68999999999999999997644

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.62  E-value=6.2e-15  Score=109.00  Aligned_cols=119  Identities=18%  Similarity=0.294  Sum_probs=92.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++...  + ..+++++..+|+.+.++. .++||+|+
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~-~~~~D~v~  105 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH--G-LGDNVTLMEGDAPEALCK-IPDIDIAV  105 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT--T-CCTTEEEEESCHHHHHTT-SCCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc--C-CCcceEEEecCHHHhccc-CCCCCEEE
Confidence            456799999999999999998876  79999999999999999986542  1 125899999998875443 25899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++.+.+.       ...+++.+.++|+|||.+++....    .+....+.+.+++.
T Consensus       106 ~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~----~~~~~~~~~~l~~~  150 (192)
T 1l3i_A          106 VGGSGGE-------LQEILRIIKDKLKPGGRIIVTAIL----LETKFEAMECLRDL  150 (192)
T ss_dssp             ESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECB----HHHHHHHHHHHHHT
T ss_pred             ECCchHH-------HHHHHHHHHHhcCCCcEEEEEecC----cchHHHHHHHHHHC
Confidence            9875421       178999999999999999986533    34555666666654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.62  E-value=3.8e-15  Score=120.43  Aligned_cols=126  Identities=17%  Similarity=0.218  Sum_probs=92.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~  133 (197)
                      ++.+|||+|||+|.++..+++..  .++++||+|+.+++.|++++...  ++.+.+++++++|+.++++.   ..++||+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~--gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~  228 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLA--GLEQAPIRWICEDAMKFIQREERRGSTYDI  228 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHH--TCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECcHHHHHHHHHhcCCCceE
Confidence            45799999999999999998864  49999999999999999987642  22222599999999987653   1568999


Q ss_pred             EEECCCCCC-CCCcccc-----cHHHHHHHHhhcCCCcEEEEEc-CCCCcChhHHHHHHH
Q psy4592         134 IITDSSDPV-GPAESLF-----QASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTLQ  186 (197)
Q Consensus       134 I~~~~~~~~-~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~  186 (197)
                      |++|+|... .+...+.     ..++++.+.++|+|||.+++.. ++.....+.+..++.
T Consensus       229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~  288 (332)
T 2igt_A          229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR  288 (332)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence            999998422 2111011     1578999999999999966654 444444555555544

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.62  E-value=3.7e-16  Score=118.59  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...    ..++++++.+|+.+. +...++||+|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD~v  110 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL----GLKNVEVLKSEENKI-PLPDNTVDFI  110 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH----TCTTEEEEECBTTBC-SSCSSCEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEecccccC-CCCCCCeeEE
Confidence            456799999999999999988764 5579999999999999999886542    224799999998653 3345789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++...++.++.    ..+++++.++|||||.+++..
T Consensus       111 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          111 FMAFTFHELSEP----LKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             EEESCGGGCSSH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeehhhhhcCCH----HHHHHHHHHHhCCCeEEEEEE
Confidence            998877666544    789999999999999999874

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.62  E-value=1.2e-15  Score=118.68  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=86.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++..     ..+++++..+|+.+ ++...++||+|+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~-~~~~~~~fD~v~  109 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKIAG-----VDRKVQVVQADARA-IPLPDESVHGVI  109 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHTTT-----SCTTEEEEESCTTS-CCSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhhc-----cCCceEEEEccccc-CCCCCCCeeEEE
Confidence            456799999999999999988773  6999999999999999998732     34689999999865 333457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....++.++.    ..+++++.++|||||.+++.
T Consensus       110 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDW----PKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTH----HHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCchhhcCCH----HHHHHHHHHHCCCCcEEEEE
Confidence            98877776554    78999999999999999886

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.62  E-value=2.3e-16  Score=124.69  Aligned_cols=122  Identities=10%  Similarity=0.021  Sum_probs=92.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++.... +++++|+++.+++.|++++...  ++ ..+++++++|+.++..  .++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n--~~-~~~v~~~~~D~~~~~~--~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN--KV-EDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT--TC-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc--CC-CceEEEEECCHHHhcc--cCCccEEE
Confidence            45679999999999999999887543 7999999999999999987642  22 2369999999987554  57899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC--CcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~  191 (197)
                      ++++...        .++++.+.++|||||.+++..+.+  ....+.++.+.+.+++.
T Consensus       198 ~~~p~~~--------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~  247 (278)
T 2frn_A          198 MGYVVRT--------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY  247 (278)
T ss_dssp             ECCCSSG--------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred             ECCchhH--------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHc
Confidence            9986211        458899999999999999987653  22234455555555443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.62  E-value=1.6e-15  Score=116.69  Aligned_cols=103  Identities=22%  Similarity=0.245  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++..       .++++++++|+.+. +...++||+|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~v~  121 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTG--YKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSL-PFENEQFEAIM  121 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcC-CCCCCCccEEE
Confidence            456799999999999999998873  699999999999999998752       35899999998763 33467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....++.++.    ..+++++.++|+|||++++...
T Consensus       122 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          122 AINSLEWTEEP----LRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EESCTTSSSCH----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcChHhhccCH----HHHHHHHHHHhCCCeEEEEEEc
Confidence            98877766554    6899999999999999999763

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.62  E-value=1.9e-15  Score=114.74  Aligned_cols=112  Identities=19%  Similarity=0.276  Sum_probs=88.4

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      +..++..+..   .++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++++        .+++++++|+.+
T Consensus        34 ~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~  100 (220)
T 3hnr_A           34 YEDILEDVVN---KSFGNVLEFGVGTGNLTNKLLLAG--RTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLS  100 (220)
T ss_dssp             HHHHHHHHHH---TCCSEEEEECCTTSHHHHHHHHTT--CEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSS
T ss_pred             HHHHHHHhhc---cCCCeEEEeCCCCCHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhh
Confidence            3455555442   356799999999999999988773  699999999999999999863        368899999876


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      . +.. ++||+|+++...++.++..  ...+++++.++|||||.+++..
T Consensus       101 ~-~~~-~~fD~v~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          101 F-EVP-TSIDTIVSTYAFHHLTDDE--KNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             C-CCC-SCCSEEEEESCGGGSCHHH--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             c-CCC-CCeEEEEECcchhcCChHH--HHHHHHHHHHhcCCCCEEEEEe
Confidence            3 333 7899999998776655431  1348999999999999999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.62  E-value=2.2e-15  Score=113.10  Aligned_cols=101  Identities=17%  Similarity=0.138  Sum_probs=84.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+|||+|||+|.++..+++..  .+++++|+++.+++.++++.         ++++++++|+.+. +...++||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-SDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT--CCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-GGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-ccCCCCeEEEEeh
Confidence            6799999999999999988773  59999999999999999874         3689999998773 4446899999998


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...++.+...  ...+++++.++|||||.+++...
T Consensus       110 ~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          110 YSLIHMGPGE--LPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             SSSTTCCTTT--HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhHhcCCHHH--HHHHHHHHHHHcCCCcEEEEEEc
Confidence            8766654221  27899999999999999998763

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.61  E-value=2.4e-15  Score=116.58  Aligned_cols=117  Identities=14%  Similarity=0.199  Sum_probs=87.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC----CCCCCCCeEEEEcchHHHHh--hcCCc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA----VGLSDPRLTVHVGDGFRFMS--EHQQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~d~~~~~~--~~~~~  130 (197)
                      ++.+|||||||+|.++..+++..+...+++||+++.+++.+++++....    .....++++++.+|+.+.++  ...++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            4569999999999999999987766799999999999999988754210    00012479999999987555  23578


Q ss_pred             eeEEEECCCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         131 FDVIITDSSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       131 ~D~I~~~~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|.|++..+.++..    ...+....+++.+.++|+|||.+++.+..
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            99999876655421    12233478999999999999999996543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.61  E-value=6.7e-16  Score=119.07  Aligned_cols=107  Identities=20%  Similarity=0.253  Sum_probs=85.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++...    ...+++++.+|+.+. +...++||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE----GKRVRNYFCCGLQDF-TPEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG----GGGEEEEEECCGGGC-CCCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc----CCceEEEEEcChhhc-CCCCCCEEEEEE
Confidence            46899999999999999988775 369999999999999999987642    134689999997653 333468999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +...++.+++.+  ..+++++.++|||||++++..
T Consensus       153 ~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          153 QWVIGHLTDQHL--AEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             ESCGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhCCHHHH--HHHHHHHHHhcCCCeEEEEEE
Confidence            877655544311  479999999999999999854

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=9.6e-16  Score=116.69  Aligned_cols=105  Identities=22%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..+  +++++|+++.+++.|+++...     ..++++++++|+.+. +...++||+|++
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~-~~~~~~~D~v~~  109 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKS-----RESNVEFIVGDARKL-SFEDKTFDYVIF  109 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCCEEEECCTTSC-CSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh-----cCCCceEEECchhcC-CCCCCcEEEEEE
Confidence            367999999999999998888754  999999999999999998754     235799999998662 333468999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.+.+......  ...++++++++|+|||.+++..
T Consensus       110 ~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          110 IDSIVHFEPLE--LNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             ESCGGGCCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCchHhCCHHH--HHHHHHHHHHHcCCCcEEEEEe
Confidence            87632222111  1679999999999999998875

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.61  E-value=7.2e-16  Score=122.54  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=84.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-----------------------------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-----------------------------  107 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-----------------------------  107 (197)
                      .+++|||||||+|.++..+++..+..+++++|+++.+++.|++++......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            568999999999999999998766689999999999999999986532100                             


Q ss_pred             -------------------------CCCCCeEEEEcchHHH----HhhcCCceeEEEECCCCCCCC----CcccccHHHH
Q psy4592         108 -------------------------LSDPRLTVHVGDGFRF----MSEHQQEFDVIITDSSDPVGP----AESLFQASYF  154 (197)
Q Consensus       108 -------------------------~~~~~~~~~~~d~~~~----~~~~~~~~D~I~~~~~~~~~~----~~~l~~~~~~  154 (197)
                                               .-..++++.++|+...    .+...++||+|++....++..    +.  ....++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~--~~~~~l  203 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE--GLKRMF  203 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH--HHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH--HHHHHH
Confidence                                     0014799999998632    223467999999987653321    11  126799


Q ss_pred             HHHHhhcCCCcEEEEEc
Q psy4592         155 ELMSRALRPGGIVCSQA  171 (197)
Q Consensus       155 ~~~~~~LkpgG~l~~~~  171 (197)
                      ++++++|+|||+|++..
T Consensus       204 ~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHhCCCcEEEEec
Confidence            99999999999999964

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=4.4e-14  Score=103.67  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=89.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++  +..+++++|+++.+++.+++++...    ..++++++++|+.+.++  .++||+|+
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~--~~~~D~i~  105 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKF----NIKNCQIIKGRAEDVLD--KLEFNKAF  105 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHT----TCCSEEEEESCHHHHGG--GCCCSEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEECCcccccc--CCCCcEEE
Confidence            4567999999999999999888  4479999999999999999987542    22579999999987433  36899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++.+    ..    ...+++.+.++  |||.+++....    .+....+.+.+++.
T Consensus       106 ~~~~----~~----~~~~l~~~~~~--~gG~l~~~~~~----~~~~~~~~~~l~~~  147 (183)
T 2yxd_A          106 IGGT----KN----IEKIIEILDKK--KINHIVANTIV----LENAAKIINEFESR  147 (183)
T ss_dssp             ECSC----SC----HHHHHHHHHHT--TCCEEEEEESC----HHHHHHHHHHHHHT
T ss_pred             ECCc----cc----HHHHHHHHhhC--CCCEEEEEecc----cccHHHHHHHHHHc
Confidence            9886    22    26789999988  99999986533    35556666666654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=2.5e-15  Score=118.34  Aligned_cols=101  Identities=17%  Similarity=0.276  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++.+++.++++.         +++++..+|+.+. +. .++||+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~-~~~fD~v~  122 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF-RV-DKPLDAVF  122 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC-CC-SSCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC-Cc-CCCcCEEE
Confidence            45679999999999999998883  379999999999999999875         3578999998763 33 47899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....++.++.    ..++++++++|||||++++....
T Consensus       123 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          123 SNAMLHWVKEP----EAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcchhhhCcCH----HHHHHHHHHhcCCCcEEEEEecC
Confidence            98877766554    68999999999999999987643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.61  E-value=4.4e-15  Score=122.29  Aligned_cols=129  Identities=12%  Similarity=0.108  Sum_probs=97.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~  133 (197)
                      .+.+|||+|||+|.++..+++.  ..+++++|+++.+++.|++++...    ...+++++++|+.++++..   ..+||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n----~~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN----GLGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT----TCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc----CCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            5579999999999999998876  379999999999999999987652    2235999999999876542   568999


Q ss_pred             EEECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH-HHHHhh
Q psy4592         134 IITDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL-QHCASV  191 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~  191 (197)
                      |++|+|........+.     ..+++..+.++|+|||.+++.+++.....+.+...+ +.+.+.
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~  346 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA  346 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            9999986443221111     156889999999999999999887766555444444 344433

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.61  E-value=1.7e-15  Score=114.50  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++.        ..++++++++|+.+.  ...++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~~d~~~~--~~~~~~D~v~  112 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGRH--------GLDNVEFRQQDLFDW--TPDRQWDAVF  112 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHGGG--------CCTTEEEEECCTTSC--CCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHhc--------CCCCeEEEecccccC--CCCCceeEEE
Confidence            455799999999999999988773  6999999999999999882        235799999998775  3467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....++.+++.  ...+++++.++|||||.+++....
T Consensus       113 ~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          113 FAHWLAHVPDDR--FEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EechhhcCCHHH--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            988766654431  167999999999999999987643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.61  E-value=1.2e-14  Score=120.11  Aligned_cols=132  Identities=18%  Similarity=0.194  Sum_probs=98.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D  132 (197)
                      ..+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++++...  ++..++++++++|+.++++..   ..+||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n--gl~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            356799999999999999998874 369999999999999999997652  110127999999999876532   46899


Q ss_pred             EEEECCCCCCCCCccc-----ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH-HHHh
Q psy4592         133 VIITDSSDPVGPAESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ-HCAS  190 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l-----~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~  190 (197)
                      +|++|+|........+     ...+++..+.+.|+|||++++.+++.....+.+...+. .+..
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~  359 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAID  359 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence            9999998533211111     11578899999999999999988776665454444443 4443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.60  E-value=3.7e-15  Score=113.92  Aligned_cols=105  Identities=21%  Similarity=0.291  Sum_probs=84.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--C---C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--Q---Q  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~---~  129 (197)
                      .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++++...  +. .++++++.+|+.+.++..  .   +
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EA-EHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TC-TTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--CC-CCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            4567999999999999999998654 579999999999999999987542  11 258999999998765432  1   6


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||+|+++++.   ..    ...+++.+.++|+|||++++.
T Consensus       145 ~~D~v~~d~~~---~~----~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          145 TFDVAVVDADK---EN----CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             CEEEEEECSCS---TT----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEECCCH---HH----HHHHHHHHHHHcCCCeEEEEE
Confidence            89999998751   11    267999999999999999984

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.60  E-value=4.4e-15  Score=113.42  Aligned_cols=113  Identities=16%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++....+. .....++++.++|+.+. +...++||+|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence            456799999999999999998873  6999999999999999998765310 01123689999998653 3345789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++....++.++... ...+++++.++|||||++++...
T Consensus       106 ~~~~~l~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          106 VMQAFLTSVPDPKE-RSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EEESCGGGCCCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhcCCCHHH-HHHHHHHHHHHcCCCeEEEEEEC
Confidence            99887666554311 13799999999999999998753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=1.5e-15  Score=120.01  Aligned_cols=104  Identities=17%  Similarity=0.078  Sum_probs=85.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++...     ..+++++++|+.+...  .++||+|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g--~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~--~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHNENSIAFLNETKEKE-----NLNISTALYDINAANI--QENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCGGGCCC--CSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHc-----CCceEEEEeccccccc--cCCccEEEE
Confidence            56799999999999999998873  59999999999999999987642     2379999999876332  578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +...++.+...  ...+++++.++|+|||.+++..
T Consensus       191 ~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRER--VPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHHH--HHHHHHHHHHhcCCCcEEEEEE
Confidence            98776654332  2689999999999999977754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.60  E-value=3.8e-15  Score=116.15  Aligned_cols=116  Identities=22%  Similarity=0.152  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++...  +++++|+++.+++.++++....     ...+++..+|+.+.++  .++||+|+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~-----~~~v~~~~~d~~~~~~--~~~fD~Vv  189 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN-----GVRPRFLEGSLEAALP--FGPFDLLV  189 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT-----TCCCEEEESCHHHHGG--GCCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-----CCcEEEEECChhhcCc--CCCCCEEE
Confidence            4567999999999999999888653  9999999999999999987642     1128999999887543  46899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++.+.+.       ...+++.+.++|||||++++....    ......+.+.+++.
T Consensus       190 ~n~~~~~-------~~~~l~~~~~~LkpgG~lils~~~----~~~~~~v~~~l~~~  234 (254)
T 2nxc_A          190 ANLYAEL-------HAALAPRYREALVPGGRALLTGIL----KDRAPLVREAMAGA  234 (254)
T ss_dssp             EECCHHH-------HHHHHHHHHHHEEEEEEEEEEEEE----GGGHHHHHHHHHHT
T ss_pred             ECCcHHH-------HHHHHHHHHHHcCCCCEEEEEeec----cCCHHHHHHHHHHC
Confidence            9874221       167899999999999999986422    23344555555544

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.60  E-value=1e-15  Score=126.02  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCC---C-CCCCCeEEEEcchHHHH-----h
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAV---G-LSDPRLTVHVGDGFRFM-----S  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~d~~~~~-----~  125 (197)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++.....   + +..++++++++|+.+..     +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356799999999999999888753 457999999999999999987532100   0 13368999999987642     3


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...++||+|+++...++.++.    ..++++++++|||||++++..
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK----LALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCH----HHHHHHHHHHcCCCCEEEEEE
Confidence            335789999999887776654    789999999999999999864

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.60  E-value=1.7e-15  Score=116.27  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=85.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++.  ..+++++|+++.+++.|++++....   ...+++++++|+.+..  ..++||+|++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~v~~  138 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR--PTELFDLIFD  138 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC--CSSCEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC--CCCCeeEEEE
Confidence            3459999999999999988774  3789999999999999999876411   1257999999987633  3468999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ....++.+...  ...+++++.++|||||++++...
T Consensus       139 ~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          139 YVFFCAIEPEM--RPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             ESSTTTSCGGG--HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ChhhhcCCHHH--HHHHHHHHHHHCCCCcEEEEEEe
Confidence            88776654221  27899999999999999998653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=4.7e-15  Score=117.09  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ .+++++|+++++++.+++++...  + ..+++++..+|+.+.    .++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~----~~~fD~v~  134 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANS--E-NLRSKRVLLAGWEQF----DEPVDRIV  134 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTC--C-CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc--C-CCCCeEEEECChhhC----CCCeeEEE
Confidence            4567999999999999999885544 59999999999999999886542  1 235899999998642    27899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....++.+...  ...+++++.++|||||.+++...
T Consensus       135 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          135 SIGAFEHFGHER--YDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             EESCGGGTCTTT--HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EeCchhhcChHH--HHHHHHHHHHhcCCCCEEEEEEe
Confidence            987665543211  27899999999999999998763

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.60  E-value=5.8e-15  Score=116.96  Aligned_cols=109  Identities=22%  Similarity=0.389  Sum_probs=84.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce---eE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF---DV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---D~  133 (197)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++....  ++ ..+++++++|+.+.++   ++|   |+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~--~l-~~~v~~~~~D~~~~~~---~~f~~~D~  195 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH--GV-SDRFFVRKGEFLEPFK---EKFASIEM  195 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT--TC-TTSEEEEESSTTGGGG---GGTTTCCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc--CC-CCceEEEECcchhhcc---cccCCCCE
Confidence            4469999999999999999887 6689999999999999999987642  11 2369999999877443   468   99


Q ss_pred             EEECCCCCCCCC---------c--ccc----cHHHHHHHH-hhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPA---------E--SLF----QASYFELMS-RALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~---------~--~l~----~~~~~~~~~-~~LkpgG~l~~~~~  172 (197)
                      |++|+|......         +  .+.    ...+++++. +.|+|||.+++..+
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            999987532111         0  000    026899999 99999999998653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.60  E-value=4.9e-15  Score=111.77  Aligned_cols=101  Identities=23%  Similarity=0.332  Sum_probs=82.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++.+++.|++++...    ..++++++.+|+.+.... .++||+|+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~~D~i~  148 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNL----DLHNVSTRHGDGWQGWQA-RAPFDAII  148 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc----CCCceEEEECCcccCCcc-CCCccEEE
Confidence            56689999999999999998877  379999999999999999987642    234799999998774433 57899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++...++.+          +.+.+.|||||++++....
T Consensus       149 ~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             Eccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence            987665443          2578999999999998755

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=1.5e-15  Score=116.61  Aligned_cols=105  Identities=24%  Similarity=0.430  Sum_probs=85.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~  133 (197)
                      .++.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...  + ..++++++.+|+.+.++..  .++||+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--G-LESRIELLFGDALQLGEKLELYPLFDV  129 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--T-CTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCcEEEEECCHHHHHHhcccCCCccE
Confidence            3567999999999999999988765689999999999999999987542  1 1247999999998865543  478999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+++.+.+   .    ...+++.+.++|+|||++++.
T Consensus       130 I~~~~~~~---~----~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          130 LFIDAAKG---Q----YRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEGGGS---C----HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEECCCHH---H----HHHHHHHHHHHcCCCeEEEEE
Confidence            99987532   1    268999999999999999986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.60  E-value=2.4e-15  Score=116.42  Aligned_cols=106  Identities=18%  Similarity=0.258  Sum_probs=86.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++..      .++++++++|+.+. +...++||+|+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~-~~~~~~fD~v~  163 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETA-TLPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEccHHHC-CCCCCCeEEEE
Confidence            456899999999999999888764 36899999999999999998753      25799999998763 33457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++..  ...+++++.++|||||++++..
T Consensus       164 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          164 IQWTAIYLTDAD--FVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcchhhhCCHHH--HHHHHHHHHHhcCCCeEEEEEe
Confidence            988765553321  2689999999999999999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.59  E-value=9.9e-16  Score=122.30  Aligned_cols=110  Identities=14%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+|||||||+|.++..++ ...+..+++++|+++.+++.|++++...  + ...+++++++|+.+. +.. ++||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~~-~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH--A-LAGQITLHRQDAWKL-DTR-EGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS--T-TGGGEEEEECCGGGC-CCC-SCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECchhcC-Ccc-CCeEEE
Confidence            566799999999999999885 4455689999999999999999987652  1 124699999998773 333 889999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++...++.++... ...++++++++|||||++++..
T Consensus       192 ~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDAR-VTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHHH-HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHHH-HHHHHHHHHHhcCCCeEEEEEe
Confidence            99887666544421 1348999999999999999876

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.59  E-value=2e-15  Score=112.55  Aligned_cols=106  Identities=18%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++. + .+++++|+++.+++.+++++...    ..++++++.+|+.+. +. .++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~-~~-~~~~D~v~  102 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN-G-YDVDAWDKNAMSIANVERIKSIE----NLDNLHTRVVDLNNL-TF-DRQYDFIL  102 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHH----TCTTEEEEECCGGGC-CC-CCCEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhC----CCCCcEEEEcchhhC-CC-CCCceEEE
Confidence            35579999999999999998877 3 69999999999999999876532    224799999998763 33 57899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+...  ...+++++.++|||||.+++..
T Consensus       103 ~~~~l~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMFLEAKT--IPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGGSCGGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcchhhhCCHHH--HHHHHHHHHHhcCCCeEEEEEE
Confidence            988766554221  2789999999999999977653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.59  E-value=4.5e-15  Score=114.10  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++... .+++++|+++.+++.++++...       .+++++++|+.+. +...++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~-~~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD-------TGITYERADLDKL-HLPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS-------SSEEEEECCGGGC-CCCTTCEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc-------CCceEEEcChhhc-cCCCCCceEEE
Confidence            3567999999999999999887742 4999999999999999998642       3799999998763 33357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|+|||++++..
T Consensus       113 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHYVEDV----ARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeccccccchH----HHHHHHHHHhcCcCcEEEEEe
Confidence            98876655443    789999999999999999865

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.59  E-value=3.3e-15  Score=111.76  Aligned_cols=133  Identities=15%  Similarity=0.167  Sum_probs=92.0

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      +...++...+...  +++.+|||+|||+|.++..+++.  ..+|+++|+++..               ..++++++++|+
T Consensus        11 ~KL~ei~~~~~~~--~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------------~~~~v~~~~~D~   71 (191)
T 3dou_A           11 FKLEFLLDRYRVV--RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------------EIAGVRFIRCDI   71 (191)
T ss_dssp             HHHHHHHHHHCCS--CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------------CCTTCEEEECCT
T ss_pred             HHHHHHHHHcCCC--CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------------cCCCeEEEEccc
Confidence            3345555555432  45689999999999999999887  3799999999741               124789999997


Q ss_pred             HHHH-----hh-c----CCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHH
Q psy4592         121 FRFM-----SE-H----QQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN  183 (197)
Q Consensus       121 ~~~~-----~~-~----~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  183 (197)
                      .+..     .. .    .++||+|++|++.........       .....++.+.++|||||.|++....    .+....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~----~~~~~~  147 (191)
T 3dou_A           72 FKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ----GDMTND  147 (191)
T ss_dssp             TSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC----STHHHH
T ss_pred             cCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC----CCCHHH
Confidence            6421     00 0    148999999986433322110       0145788889999999999986532    344567


Q ss_pred             HHHHHHhhCCccc
Q psy4592         184 TLQHCASVFPRLH  196 (197)
Q Consensus       184 ~~~~~~~~f~~v~  196 (197)
                      +...++..|..|+
T Consensus       148 ~~~~l~~~F~~v~  160 (191)
T 3dou_A          148 FIAIWRKNFSSYK  160 (191)
T ss_dssp             HHHHHGGGEEEEE
T ss_pred             HHHHHHHhcCEEE
Confidence            7778888887765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.59  E-value=1.4e-14  Score=110.63  Aligned_cols=105  Identities=19%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--hhcCCce
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--SEHQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  131 (197)
                      ..++.+|||+|||+|.++..+++. .+..+++++|+++.+++.++++...     . ++++++++|+.+..  ....++|
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~-~~v~~~~~d~~~~~~~~~~~~~~  144 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----R-RNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----C-TTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----c-CCCEEEEccCCCcchhhcccCCc
Confidence            345679999999999999998865 3446999999999999999888764     2 68999999987632  1224589


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+++.+.   +..   ...+++++.++|||||.+++..
T Consensus       145 D~v~~~~~~---~~~---~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVAQ---PTQ---AKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCCS---TTH---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCC---HhH---HHHHHHHHHHhcCCCCEEEEEE
Confidence            999998761   111   1345999999999999998863

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.59  E-value=1.3e-15  Score=120.89  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....  + ..++++++.+|+.+ ++...++||+|+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~-~~~~~~~fD~v~  155 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA--G-LADNITVKYGSFLE-IPCEDNSYDFIW  155 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH--T-CTTTEEEEECCTTS-CSSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhc--C-CCcceEEEEcCccc-CCCCCCCEeEEE
Confidence            4567999999999999999887643 69999999999999999876431  1 13579999999876 344457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus       156 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLHSPDK----LKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhhcCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence            98776665553    789999999999999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.59  E-value=4.1e-15  Score=111.88  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             CcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          24 GTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        24 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      ...+.++...............++..+... .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..
T Consensus        28 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~  105 (205)
T 3grz_A           28 QEIIRLDPGLAFGTGNHQTTQLAMLGIERA-MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAAL  105 (205)
T ss_dssp             CEEEEESCC-----CCHHHHHHHHHHHHHH-CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             ceeEEecCCcccCCCCCccHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            445566655544443332223333333321 245679999999999999998876 446999999999999999998764


Q ss_pred             CCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         104 MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       104 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .    ...++++..+|+.+.   ..++||+|+++++.+.       ...+++++.++|+|||.+++..
T Consensus       106 ~----~~~~v~~~~~d~~~~---~~~~fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          106 N----GIYDIALQKTSLLAD---VDGKFDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             T----TCCCCEEEESSTTTT---CCSCEEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEE
T ss_pred             c----CCCceEEEecccccc---CCCCceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEe
Confidence            2    223499999998653   3478999999875322       1678899999999999999853

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.59  E-value=4.4e-15  Score=124.59  Aligned_cols=132  Identities=16%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..++...+ ...|+++|+++.+++.+++++...    ... +.++++|+.+......++||+|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~----G~~-v~~~~~Da~~l~~~~~~~FD~I  174 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW----GAP-LAVTQAPPRALAEAFGTYFHRV  174 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH----CCC-CEEECSCHHHHHHHHCSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----CCe-EEEEECCHHHhhhhccccCCEE
Confidence            4567999999999999999886543 368999999999999999987653    223 8999999988654346789999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++|+|....    ..+..              ...++++.+.++|||||++++.+++...  +....+...+.+.+|+
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~--eEne~vv~~~l~~~~~  250 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP--EENEGVVAHFLKAHPE  250 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGTHHHHHHHHHHCTT
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch--hcCHHHHHHHHHHCCC
Confidence            999986321    11111              1167899999999999999998876443  2233444444444443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=2.6e-15  Score=118.24  Aligned_cols=122  Identities=11%  Similarity=0.024  Sum_probs=92.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...    ...++.++++|+.+. +. .++||+|+
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n----~l~~~~~~~~d~~~~-~~-~~~~D~Vi  191 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN----KLNNVIPILADNRDV-EL-KDVADRVI  191 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT----TCSSEEEEESCGGGC-CC-TTCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEECChHHc-Cc-cCCceEEE
Confidence            4567999999999999999988755579999999999999999987652    224789999999876 43 56899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHHHHHHHHhh
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQHCASV  191 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~  191 (197)
                      ++++.    .    ..++++.+.+.|+|||.+++....... ..+.+.+..+.+.+.
T Consensus       192 ~d~p~----~----~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~  240 (272)
T 3a27_A          192 MGYVH----K----THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK  240 (272)
T ss_dssp             ECCCS----S----GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred             ECCcc----c----HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence            99874    1    156889999999999999986543211 123445555555443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=113.60  Aligned_cols=110  Identities=17%  Similarity=0.221  Sum_probs=84.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++... .+++++|+++.+++.++++...      .++++++.+|+.+. +...++||+|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~v~  112 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-DFPSASFDVVL  112 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-CCCCCcccEEE
Confidence            4567999999999999999888754 4999999999999999998753      35899999998763 33457899999


Q ss_pred             ECCCCCCCC---------Cc--ccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGP---------AE--SLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~---------~~--~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++.+.+...         ..  .-....+++++.++|||||.+++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            876532111         00  001267999999999999999987644

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.59  E-value=7.5e-16  Score=125.13  Aligned_cols=111  Identities=23%  Similarity=0.237  Sum_probs=87.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...     ....+++.+|+.+.   ..++||+|++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~~d~~~~---~~~~fD~Iv~  267 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN-----GVEGEVFASNVFSE---VKGRFDMIIS  267 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT-----TCCCEEEECSTTTT---CCSCEEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCEEEEcccccc---ccCCeeEEEE
Confidence            456999999999999999988766679999999999999999987542     23467888997653   2578999999


Q ss_pred             CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      +++.+...... -....+++++.++|||||.+++..+...
T Consensus       268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            99987642111 1126799999999999999999775543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=5.1e-15  Score=114.23  Aligned_cols=105  Identities=10%  Similarity=0.049  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc----CCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH----QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  131 (197)
                      .++.+|||+|||+|.++..+++..+  +++++|+++.+++.++++..       ..+++++++|+.+.....    ..+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccCc
Confidence            4557999999999999999988754  89999999999999999874       247999999987643221    1359


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+++...++.+...  ...++++++++|||||++++..
T Consensus       126 d~v~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEK--RELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             CEEEEESSSTTSCGGG--HHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cEEEEcchhhcCCHHH--HHHHHHHHHHHcCCCCEEEEEe
Confidence            9999998877765322  2789999999999999977754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.59  E-value=1.1e-14  Score=120.37  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~  133 (197)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++. ++++++++|+.+.++.   ...+||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n--~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLN--GVE-DRMKFIVGSAFEEMEKLQKKGEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT--TCG-GGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCC-ccceEEECCHHHHHHHHHhhCCCCCE
Confidence            5679999999999999999877 3469999999999999999987652  111 2799999999887653   2568999


Q ss_pred             EEECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         134 IITDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      |++|+|........+.     ..+++..+.++|+|||.+++.+++.....+.+...+
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v  349 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  349 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHH
Confidence            9999986443221111     156889999999999999998887766655555444

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.58  E-value=1.1e-14  Score=110.49  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      ..+.+|||+|||+|.++..+++..  .+++++|+++.+++.++++          .++.+..+|+.+....   ...+||
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCC--CEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhcccccccCCCcc
Confidence            456899999999999999988773  6999999999999999886          2467888998775322   234699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|++....+ ..+.    ..++++++++|||||++++....
T Consensus       119 ~v~~~~~l~-~~~~----~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          119 LICANFALL-HQDI----IELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             EEEEESCCC-SSCC----HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECchhh-hhhH----HHHHHHHHHHhCCCeEEEEEecC
Confidence            999988777 3333    78999999999999999997643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.58  E-value=3.5e-15  Score=114.78  Aligned_cols=104  Identities=22%  Similarity=0.372  Sum_probs=83.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---C--Cc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---Q--QE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~--~~  130 (197)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+++++++.|++++...  ++ .++++++.+|+.+.++..   .  ++
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA--GV-AEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--TC-GGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            567999999999999999998754 579999999999999999887532  11 247999999998765532   2  78


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ||+|+++...   ..    ...+++++.++|+|||++++.
T Consensus       149 fD~V~~d~~~---~~----~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          149 FDLIFIDADK---RN----YPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEEEECSCG---GG----HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCEEEECCCH---HH----HHHHHHHHHHHcCCCeEEEEe
Confidence            9999998741   11    267999999999999999985

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.58  E-value=4.1e-15  Score=108.50  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++.         +++++..+|    .+...++||+|+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~---------~~v~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF---------DSVITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC---------TTSEEESSG----GGSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC---------CCcEEEeCC----CCCCCCceEEEE
Confidence            456799999999999999998876  49999999999999999872         368899998    344467899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..+++++.++|||||++++..
T Consensus        81 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           81 FANSFHDMDDK----QHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             EESCSTTCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EccchhcccCH----HHHHHHHHHhcCCCCEEEEEE
Confidence            99887766554    789999999999999999875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=8.9e-16  Score=115.54  Aligned_cols=119  Identities=14%  Similarity=0.222  Sum_probs=85.4

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      +.+++..+...  .++.+|||+|||+|..+..++...+ .+++++|+++.+++.++++...     ...+++++++|+.+
T Consensus        11 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~   82 (209)
T 2p8j_A           11 LYRFLKYCNES--NLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRE-----NNFKLNISKGDIRK   82 (209)
T ss_dssp             HHHHHHHHHHS--SSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHH-----HTCCCCEEECCTTS
T ss_pred             HHHHHHHHhcc--CCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHh-----cCCceEEEECchhh
Confidence            34444444322  4567999999999987444333323 6999999999999999987653     12478899999876


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      . +...++||+|++....++.+...  ...++++++++|||||.+++...
T Consensus        83 ~-~~~~~~fD~v~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           83 L-PFKDESMSFVYSYGTIFHMRKND--VKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             C-CSCTTCEEEEEECSCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-CCCCCceeEEEEcChHHhCCHHH--HHHHHHHHHHHcCCCcEEEEEEe
Confidence            2 33357899999976554442111  26799999999999999998763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.58  E-value=1.9e-14  Score=126.65  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++++|||+|||+|.++..+++.+ ..++++||+|+.+++.|++++...  ++...+++++++|+.++++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~n--gl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLN--GLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT--TCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            56799999999999999988754 357999999999999999997652  233357999999999988776679999999


Q ss_pred             CCCCCCCCCc--cc-----ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         137 DSSDPVGPAE--SL-----FQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       137 ~~~~~~~~~~--~l-----~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      |+|.......  ..     ...++++.+.++|+|||++++..++.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            9985331110  00     11567899999999999999877663

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.58  E-value=1.9e-15  Score=119.63  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~  133 (197)
                      .++.+|||||||+|.++..+++..  .+++++|+++.+++.|+++...........++.+..+|+.+...  ...++||+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            356799999999999999998874  59999999999999998764211000012478899999877531  23578999


Q ss_pred             EEEC-CCCCCCCCc---ccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITD-SSDPVGPAE---SLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~-~~~~~~~~~---~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |++. ...++.++.   .-....++++++++|||||++++...
T Consensus       134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9997 555444430   00127899999999999999998753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.57  E-value=3.8e-15  Score=118.99  Aligned_cols=114  Identities=14%  Similarity=0.081  Sum_probs=79.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCC--CCCCeEEEEcch------HHHHh-hc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL--SDPRLTVHVGDG------FRFMS-EH  127 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~d~------~~~~~-~~  127 (197)
                      ++.+|||||||+|..+..++... ..+++|+|+|+.+++.|++..+......  ...++++.+.|+      .+... ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            45799999999998666555543 3689999999999999998764310000  001266778876      33221 23


Q ss_pred             CCceeEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         128 QQEFDVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .++||+|++....|+. ...+  ...++++++++|||||+|++.+.+
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~--~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRH--YATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTT--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEECchHHHhCCHHH--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5689999998766543 2222  268999999999999999987643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.57  E-value=8.6e-15  Score=109.62  Aligned_cols=133  Identities=15%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC--CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS--VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      ..++...+..+  +++.+|||+|||+|.++..+++..+  ..+++++|+++..        .       .++++++++|+
T Consensus        10 l~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~-------~~~v~~~~~d~   72 (201)
T 2plw_A           10 LIELDNKYLFL--KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P-------IPNVYFIQGEI   72 (201)
T ss_dssp             HHHHHHHHCCC--CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C-------CTTCEEEECCT
T ss_pred             HHHHHHHcCCC--CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C-------CCCceEEEccc
Confidence            34444444322  4567999999999999999987655  5799999999831        1       23678888887


Q ss_pred             HHHH-----------------------h-hcCCceeEEEECCCCCCCCCcccc-------cHHHHHHHHhhcCCCcEEEE
Q psy4592         121 FRFM-----------------------S-EHQQEFDVIITDSSDPVGPAESLF-------QASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       121 ~~~~-----------------------~-~~~~~~D~I~~~~~~~~~~~~~l~-------~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .+..                       . ...++||+|+++...++.......       ....++.+.++|||||.+++
T Consensus        73 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A           73 GKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             TTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            6531                       0 224689999999876553211100       02478889999999999998


Q ss_pred             EcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         170 QAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ....    .+....+...++..|..++
T Consensus       153 ~~~~----~~~~~~l~~~l~~~f~~v~  175 (201)
T 2plw_A          153 KMYL----GSQTNNLKTYLKGMFQLVH  175 (201)
T ss_dssp             EEEC----STTHHHHHHHHHTTEEEEE
T ss_pred             EEeC----CCCHHHHHHHHHHHHheEE
Confidence            6533    1334455566666665543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.57  E-value=1.1e-14  Score=116.86  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=87.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...    ..++++++++|+.+... ..++||+|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~----g~~~v~~~~~D~~~~~~-~~~~fD~I  191 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL----GVLNVILFHSSSLHIGE-LNVEFDKI  191 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH----TCCSEEEESSCGGGGGG-GCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh----CCCeEEEEECChhhccc-ccccCCEE
Confidence            456799999999999999988753 3479999999999999999987643    22479999999887543 35689999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      ++|++....    ..+..              ...++++++.++|||||++++.+++..
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            999874321    11100              014789999999999999999876643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.57  E-value=5.1e-15  Score=118.53  Aligned_cols=106  Identities=13%  Similarity=0.096  Sum_probs=85.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+ .+++++|+++.+++.|+++....  + ..++++++++|+.+. +...++||+|+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~~~~~fD~V~  190 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRAREL--R-IDDHVRSRVCNMLDT-PFDKGAVTASW  190 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHT--T-CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc--C-CCCceEEEECChhcC-CCCCCCEeEEE
Confidence            4567999999999999999887643 68999999999999999986542  1 124799999998753 33457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++..     ...+++++.++|||||++++..
T Consensus       191 ~~~~l~~~~-----~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMYVD-----LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGGSC-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence            987665542     3789999999999999999875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.57  E-value=6.4e-15  Score=113.59  Aligned_cols=106  Identities=15%  Similarity=0.333  Sum_probs=83.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-------  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------  127 (197)
                      .++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  + ...+++++.+|+.+.++..       
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g-~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN--G-LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--T-CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--C-CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            3567999999999999999887654 579999999999999999987542  1 1235999999998865532       


Q ss_pred             --------C-CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 --------Q-QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 --------~-~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                              . ++||+|+++...   ..    ...+++.+.++|+|||++++..
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~---~~----~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADK---EN----YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCG---GG----HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccCCCCCcCEEEEeCCH---HH----HHHHHHHHHHHcCCCeEEEEEc
Confidence                    2 789999998531   11    1578999999999999999864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.57  E-value=1.1e-14  Score=118.59  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..++.+|||+|||+|.++.+++... +..+++++|+|+.+++.|++++...  ++  .++++.++|+.+.. ...++||+
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~--g~--~~i~~~~~D~~~~~-~~~~~~D~  275 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS--GL--SWIRFLRADARHLP-RFFPEVDR  275 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT--TC--TTCEEEECCGGGGG-GTCCCCSE
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc--CC--CceEEEeCChhhCc-cccCCCCE
Confidence            3556799999999999999988764 5579999999999999999997652  11  27999999998753 33457899


Q ss_pred             EEECCCCCCCCC--ccc--ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPA--ESL--FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~--~~l--~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |++|+|......  ..+  ....+++.+.++|+|||.+++.+..
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999998654322  111  0157889999999999999997654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.57  E-value=5.1e-15  Score=115.48  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.|+++.+         +++++++|+.+. +. .++||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~-~~-~~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP---------DAVLHHGDMRDF-SL-GRRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTC-CC-SCCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCEEEECChHHC-Cc-cCCcCEEE
Confidence            455799999999999999998774  589999999999999999752         688999998763 22 57899999


Q ss_pred             ECC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.. ..++.++..- ...++++++++|||||.+++.
T Consensus       116 ~~~~~l~~~~~~~~-~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          116 CMFSSIGHLAGQAE-LDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             ECTTGGGGSCHHHH-HHHHHHHHHHTEEEEEEEEEC
T ss_pred             EcCchhhhcCCHHH-HHHHHHHHHHhcCCCcEEEEE
Confidence            986 5555432111 157899999999999999995

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.56  E-value=1.3e-14  Score=111.31  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---HhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---MSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++...      .+++.++.+|+.+.   .+. .++||
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~-~~~~D  145 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEYANI-VEKVD  145 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGGTTT-SCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCccccccc-CccEE
Confidence            456799999999999999988765557999999999999999998754      26899999998752   122 26899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+.+.+.     +. ....+++++.+.|||||.+++.
T Consensus       146 ~v~~~~~~-----~~-~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYEDVAQ-----PN-QAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEECCCS-----TT-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCC-----hh-HHHHHHHHHHHhCCCCcEEEEE
Confidence            99966532     11 1256799999999999999985

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.56  E-value=8.2e-15  Score=110.22  Aligned_cols=103  Identities=11%  Similarity=0.070  Sum_probs=82.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..++...+..+++++|+++.+++.++++....    ..+++++..+|+.+..  ..++||+|++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEecchhhCC--ccCCcCEEEE
Confidence            357999999999999999887656689999999999999999886542    2245999999987643  2468999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +..    .+    ...+++.+.++|+|||.+++..+.
T Consensus       139 ~~~----~~----~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          139 RAF----AS----LNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             SCS----SS----HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             ecc----CC----HHHHHHHHHHhcCCCcEEEEEeCC
Confidence            653    11    167999999999999999987543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.56  E-value=1.8e-14  Score=115.39  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ .+++++|+++++++.++++....  + ..+++++..+|+.+.    +++||+|+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~----~~~fD~v~  160 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASI--D-TNRSRQVLLQGWEDF----AEPVDRIV  160 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTS--C-CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECChHHC----CCCcCEEE
Confidence            4567999999999999999887643 69999999999999999886542  1 124799999998653    27899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +....++.+...  ...+++++.++|||||.+++....
T Consensus       161 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          161 SIEAFEHFGHEN--YDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             EESCGGGTCGGG--HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             EeChHHhcCHHH--HHHHHHHHHHhcCCCcEEEEEEec
Confidence            987765543221  278999999999999999987643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.56  E-value=8.9e-15  Score=122.58  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..++... +...|+++|+++.+++.+++++...    ...++.+.++|+.++.....++||+|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~----g~~nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW----GVSNAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH----TCSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhhhccccCCEE
Confidence            456799999999999999988653 3369999999999999999987653    23479999999988654446789999


Q ss_pred             EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      ++|+|.....    ++..              ...++++.+.++|||||.+++.+++...
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            9999853311    1100              1137899999999999999998876443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.56  E-value=4.4e-15  Score=118.07  Aligned_cols=111  Identities=19%  Similarity=0.231  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||||||+|.++..+++..  .+++++|+++.+++.|++++...+.. ...+++++++|+.+. +. .++||+|+
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~~-~~-~~~fD~v~  155 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDLG--WEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMSAF-AL-DKRFGTVV  155 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTTT--CCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTTBC-CC-SCCEEEEE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchhcC-Cc-CCCcCEEE
Confidence            344599999999999999998873  68999999999999999987641000 005799999998763 32 57899998


Q ss_pred             EC-CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TD-SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~-~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +. ...++.+...  ...++++++++|||||.+++....
T Consensus       156 ~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          156 ISSGSINELDEAD--RRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             ECHHHHTTSCHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCcccccCCHHH--HHHHHHHHHHHcCCCcEEEEEeec
Confidence            64 3233332211  167999999999999999998644

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.56  E-value=1.3e-14  Score=109.48  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++          ++++..+|+.+..  ..++||+|+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~--~~~~fD~v~  107 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAG--FDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD--AIDAYDAVW  107 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC--CCSCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcC--CeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC--CCCcEEEEE
Confidence            356799999999999999988773  69999999999999999875          2456778876533  467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....++.+...  ...++++++++|||||++++...
T Consensus       108 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          108 AHACLLHVPRDE--LADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             ECSCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCchhhcCHHH--HHHHHHHHHHhcCCCcEEEEEEc
Confidence            988766554211  16799999999999999999753

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.56  E-value=4.4e-14  Score=111.33  Aligned_cols=109  Identities=16%  Similarity=0.079  Sum_probs=86.0

Q ss_pred             CCCeEEEEeCCc---hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---------
Q psy4592          57 NPKKVLIVGGGD---GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---------  124 (197)
Q Consensus        57 ~~~~vLdiG~G~---G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---------  124 (197)
                      ...+|||||||+   |.++..+.+..+..+++++|+||.|++.|++++..      .++++++.+|+.+..         
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence            347999999999   98876666655668999999999999999998752      358999999987531         


Q ss_pred             h-hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         125 S-EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       125 ~-~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      . ...++||+|++....|+.++..  ...++++++++|+|||+|++....
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~~--~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPDV--VDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTTT--HHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             ccCCCCCCEEEEEechhhhCCcHH--HHHHHHHHHHhCCCCcEEEEEEec
Confidence            1 1124799999998887766531  278999999999999999987643

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.56  E-value=7e-15  Score=116.65  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccE--EEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-----
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESA--YLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-----  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v--~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----  125 (197)
                      ++.+|||||||+|.++..++    ...+...+  +++|+|++|++.|++.+... .+....++.+..+++.+...     
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT-SNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC-SSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc-cCCCcceEEEEecchhhhhhhhccc
Confidence            45699999999997664332    22233444  99999999999999876421 01111234456777765432     


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..+++||+|++....++.++.    ...+++++++|||||.+++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI----PATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH----HHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence            235789999999988887765    789999999999999999864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.56  E-value=7.6e-15  Score=115.62  Aligned_cols=117  Identities=20%  Similarity=0.277  Sum_probs=90.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.|++++...  + ..+++++..+|+.+.+  ..++||+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~--~~~~~D~V  185 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--G-LIERVTIKVRDISEGF--DEKDVDAL  185 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--T-CGGGEEEECCCGGGCC--SCCSEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc--C-CCCCEEEEECCHHHcc--cCCccCEE
Confidence            45679999999999999998876 55579999999999999999987542  1 1247999999987652  24689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++++.     +    ..+++++.++|+|||.+++...+    .+....+.+.+++
T Consensus       186 ~~~~~~-----~----~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~~~l~~  228 (277)
T 1o54_A          186 FLDVPD-----P----WNYIDKCWEALKGGGRFATVCPT----TNQVQETLKKLQE  228 (277)
T ss_dssp             EECCSC-----G----GGTHHHHHHHEEEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred             EECCcC-----H----HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHH
Confidence            998742     2    35789999999999999997643    2445555555554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.56  E-value=4.6e-16  Score=119.92  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=79.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|+++.+++.|++++...  + ..++++++++|+.+..  ..++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~--~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVY--G-IADKIEFICGDFLLLA--SFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--T-CGGGEEEEESCHHHHG--GGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc--C-CCcCeEEEECChHHhc--ccCCCCEEEE
Confidence            56799999999999999999874  79999999999999999987642  1 1147999999998865  3478999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +++.+......    ..+.+++++|+|||.+++.
T Consensus       151 ~~~~~~~~~~~----~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          151 SPPWGGPDYAT----AETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCCSSGGGGG----SSSBCTTTSCSSCHHHHHH
T ss_pred             CCCcCCcchhh----hHHHHHHhhcCCcceeHHH
Confidence            99876643321    1334567778888876553

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.56  E-value=8.4e-15  Score=115.34  Aligned_cols=118  Identities=17%  Similarity=0.218  Sum_probs=90.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.|++++....   ..++++++.+|+.+.+  ..++||+|
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---g~~~v~~~~~d~~~~~--~~~~fD~V  183 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFI--SDQMYDAV  183 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCC--CSCCEEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECchhccC--cCCCccEE
Confidence            45679999999999999998876 455799999999999999999875410   1257999999987622  34689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +++++     +.    ..+++++.++|||||.+++....    ......+.+.+++.
T Consensus       184 i~~~~-----~~----~~~l~~~~~~LkpgG~l~i~~~~----~~~~~~~~~~l~~~  227 (275)
T 1yb2_A          184 IADIP-----DP----WNHVQKIASMMKPGSVATFYLPN----FDQSEKTVLSLSAS  227 (275)
T ss_dssp             EECCS-----CG----GGSHHHHHHTEEEEEEEEEEESS----HHHHHHHHHHSGGG
T ss_pred             EEcCc-----CH----HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHHC
Confidence            99764     22    45889999999999999997644    23455555555543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.55  E-value=1.9e-15  Score=115.89  Aligned_cols=110  Identities=8%  Similarity=-0.097  Sum_probs=80.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcC-HHHHHHH---HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID-NRVIEVS---KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~-~~~~~~a---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      .++.+|||||||+|.++..+++..+..++++||++ +.|++.|   +++....    ..+++.+..+|+.+......+.+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~----~~~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG----GLSNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----CCSSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEcCHHHhhhhccCeE
Confidence            45679999999999999998866566899999999 7777776   6654431    23579999999887522224678


Q ss_pred             eEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         132 DVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       132 D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      |.|+++.+.+.. .........++++++++|||||++++
T Consensus        99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            888887753221 00001125789999999999999998

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.55  E-value=1.6e-14  Score=108.99  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+    +..+++++|+++.+++.++++.         ++++++++|+.+ ++...++||+|++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~-~~~~~~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEA-LPFPGESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTS-CCSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEccccc-CCCCCCcEEEEEE
Confidence            6679999999999998876    3238999999999999999875         357889999765 3334568999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ....++.++.    ..+++++.++|||||.+++....
T Consensus       102 ~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          102 FTTLEFVEDV----ERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             ESCTTTCSCH----HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cChhhhcCCH----HHHHHHHHHHcCCCCEEEEEecC
Confidence            8877666544    78999999999999999997644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.55  E-value=2.2e-14  Score=105.13  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..   +++++|+++.+++.      .       ++++++++|+.+..  ..++||+|++
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------~-------~~~~~~~~d~~~~~--~~~~fD~i~~   84 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------H-------RGGNLVRADLLCSI--NQESVDVVVF   84 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------C-------SSSCEEECSTTTTB--CGGGCSEEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------c-------cCCeEEECChhhhc--ccCCCCEEEE
Confidence            45699999999999999998775   99999999999887      1       35789999987632  2378999999


Q ss_pred             CCCCCCCCCcc-----cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAES-----LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~-----l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++.+...+..     ....++++++.+.| |||.+++..
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            99876543320     00145788888888 999999865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.55  E-value=6.8e-15  Score=113.09  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=81.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++.   .+++++|+++.+++.|+++...     ...+++++++|+.+. +. .++||+|++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~-~~-~~~fD~v~~  102 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME-----TNRHVDFWVQDMREL-EL-PEPVDAITI  102 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH-----TTCCCEEEECCGGGC-CC-SSCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh-----cCCceEEEEcChhhc-CC-CCCcCEEEE
Confidence            4579999999999999988866   6999999999999999988654     235789999998763 22 378999998


Q ss_pred             CC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      .. ..++..+.. ....+++++.++|+|||.+++...
T Consensus       103 ~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A          103 LCDSLNYLQTEA-DVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             CTTGGGGCCSHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCchhhcCCHH-HHHHHHHHHHHhcCCCeEEEEEcC
Confidence            75 433332211 126789999999999999998653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=1.2e-14  Score=113.46  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++.+++.++++          .+++++++|+.+ ++...++||+|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~d~~~-~~~~~~~fD~v~   99 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPSIVMRQQAVVH----------PQVEWFTGYAEN-LALPDKSVDGVI   99 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT--TCEEEEECSCHHHHHSSCCC----------TTEEEECCCTTS-CCSCTTCBSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC--CCEEEEEeCCHHHHHHHHhc----------cCCEEEECchhh-CCCCCCCEeEEE
Confidence            46689999999999999999874  37999999999998876553          279999999876 344467999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....++.++.    ..++++++++|| ||.+++...
T Consensus       100 ~~~~l~~~~~~----~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          100 SILAIHHFSHL----EKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             EESCGGGCSSH----HHHHHHHHHHBC-SSCEEEEEE
T ss_pred             EcchHhhccCH----HHHHHHHHHHhC-CcEEEEEEc
Confidence            99877666554    789999999999 997776653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.55  E-value=4.7e-15  Score=116.81  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++.+. .+|+++|+||..++.+++|+...  ++ ..+++++++|++++..  .+.||.|+
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N--~v-~~~v~~~~~D~~~~~~--~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN--KV-EDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT--TC-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEeCcHHHhcc--ccCCCEEE
Confidence            5678999999999999999887743 68999999999999999998753  22 3579999999987543  46899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++|..        ..+++..+.++||+||++.+..
T Consensus       198 ~~~p~~--------~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYVVR--------THEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCCSS--------GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCc--------HHHHHHHHHHHcCCCCEEEEEe
Confidence            998621        1458889999999999987654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=7.7e-15  Score=113.63  Aligned_cols=106  Identities=18%  Similarity=0.267  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.|+++...     ...+++++++|+.+. +. .++||+|+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~-~~-~~~fD~v~  110 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE-----RNLKIEFLQGDVLEI-AF-KNEFDAVT  110 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCCEEEESCGGGC-CC-CSCEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHh-----cCCceEEEECChhhc-cc-CCCccEEE
Confidence            456799999999999999988773  6999999999999999988754     234799999998763 22 36899999


Q ss_pred             ECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +.... +..+...  ...+++++.++|+|||.+++...
T Consensus       111 ~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          111 MFFSTIMYFDEED--LRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             ECSSGGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCCchhcCCHHH--HHHHHHHHHHHcCCCeEEEEecc
Confidence            86432 2211111  26789999999999999998653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.54  E-value=1.1e-14  Score=106.07  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-----h--hc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-----S--EH  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~  127 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++ +++              .+++++..+|+.+..     +  ..
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP--------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC--------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc--------------cCcEEEEEcccccchhhhhhhccCC
Confidence            45679999999999999998876 3447999999999 632              146889999987642     1  23


Q ss_pred             CCceeEEEECCCCCCCCCccccc-------HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQ-------ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~-------~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      .++||+|+++++.++........       ..+++++.++|+|||.+++.....    .....+.+.++..|..+
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~~~~~~~~~  156 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG----EGFDEYLREIRSLFTKV  156 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS----TTHHHHHHHHHHHEEEE
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC----CcHHHHHHHHHHhhhhE
Confidence            46899999998876654321111       478999999999999999865332    22344444444445443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.54  E-value=5.5e-15  Score=113.59  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++....     ..+++++++|+.+. +. .++||+|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~-~~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNL-NI-NRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGC-CC-SCCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhc-----CCCeEEEecccccC-Cc-cCCceEEEE
Confidence            56799999999999999988773  68999999999999999887541     23789999998763 22 278999999


Q ss_pred             CC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      .. ..++.+...- ...++++++++|||||.+++...
T Consensus       108 ~~~~l~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          108 CLDSTNYIIDSDD-LKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CTTGGGGCCSHHH-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCccccccCCHHH-HHHHHHHHHHhcCCCcEEEEEec
Confidence            87 6555432111 26799999999999999998653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.54  E-value=2.7e-14  Score=117.40  Aligned_cols=110  Identities=16%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC-----CCCCCCCCeEEEEcchHHHHhhc-CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM-----AVGLSDPRLTVHVGDGFRFMSEH-QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~-~~  129 (197)
                      .++.+|||||||+|.++..++...+..+++|||+++.+++.|+++....     ..++...+++++++|+.+..... -.
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~  251 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  251 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence            5668999999999999999886555446999999999999998753110     01112358999999987643211 14


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .||+|+++.+.+. ++.    ...+.++++.|||||+|++.
T Consensus       252 ~aDVVf~Nn~~F~-pdl----~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          252 NTSVIFVNNFAFG-PEV----DHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             TCSEEEECCTTCC-HHH----HHHHHHHHTTSCTTCEEEES
T ss_pred             CccEEEEcccccC-chH----HHHHHHHHHcCCCCcEEEEe
Confidence            6999999876532 222    56778899999999999985

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=111.56  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--hhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--SEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~D  132 (197)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+.++...      .++++++++|+.+..  +...++||
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK------RTNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH------CTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc------cCCeEEEEcccCChhhhcccCCcEE
Confidence            456799999999999999988763 447999999999887776665542      257999999987632  33357899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+++++   .+..   ...+++++.++|||||.+++..
T Consensus       150 ~V~~~~~---~~~~---~~~~~~~~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          150 VIFADVA---QPDQ---TRIVALNAHTFLRNGGHFVISI  182 (233)
T ss_dssp             EEEECCC---CTTH---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCC---CccH---HHHHHHHHHHHcCCCeEEEEEE
Confidence            9999876   1111   1456888999999999999854

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.54  E-value=4.4e-15  Score=109.96  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=79.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.+.+|||+|||+|.++..+....+..+++++|+|+.|++.+++++...     +...++..+|..+..  ..++||+|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~-----g~~~~v~~~d~~~~~--~~~~~DvVL  120 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL-----KTTIKYRFLNKESDV--YKGTYDVVF  120 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEEECCHHHH--TTSEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCccEEEecccccC--CCCCcChhh
Confidence            4578999999999999999988777789999999999999999997652     222234446765543  357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.-..|...+.    +..+..+.+.|+|||+++-.
T Consensus       121 a~k~LHlL~~~----~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          121 LLKMLPVLKQQ----DVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EETCHHHHHHT----TCCHHHHHHTCEEEEEEEEE
T ss_pred             HhhHHHhhhhh----HHHHHHHHHHhCCCCEEEEe
Confidence            98876665221    23445899999999998864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.54  E-value=1.4e-14  Score=112.49  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=91.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.|++++.... +  .+++++..+|+.+. +...++||+|
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-g--~~~v~~~~~d~~~~-~~~~~~~D~v  170 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW-Q--VENVRFHLGKLEEA-ELEEAAYDGV  170 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-C--CCCEEEEESCGGGC-CCCTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-C--CCCEEEEECchhhc-CCCCCCcCEE
Confidence            45679999999999999998876 445799999999999999999865310 1  25799999998764 2234689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +++++     +.    ..+++++.++|+|||.+++...+    .+...++.+.+++.
T Consensus       171 ~~~~~-----~~----~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~  214 (258)
T 2pwy_A          171 ALDLM-----EP----WKVLEKAALALKPDRFLVAYLPN----ITQVLELVRAAEAH  214 (258)
T ss_dssp             EEESS-----CG----GGGHHHHHHHEEEEEEEEEEESC----HHHHHHHHHHHTTT
T ss_pred             EECCc-----CH----HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHHHHHHHHC
Confidence            99764     22    35889999999999999997644    34556666666543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.54  E-value=3.1e-14  Score=111.27  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=77.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH-HHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR-FMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~D~I  134 (197)
                      .++.+|||||||+|.++..+++..  .+|+++|+|+.|++.|+++...     .  .+.....++.. ......++||+|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~-----~--~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALAD-----R--CVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSS-----S--CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh-----c--cceeeeeecccccccccCCCccEE
Confidence            566799999999999999998874  6999999999999999998764     1  23332233211 001124689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++...++.....  ....++++.++| |||.++++...
T Consensus       115 v~~~~l~~~~~~~--~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          115 LNDRLINRFTTEE--ARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             EEESCGGGSCHHH--HHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             EEhhhhHhCCHHH--HHHHHHHHHHhC-cCcEEEEEecc
Confidence            9988765443222  156899999999 99999997643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.54  E-value=7.7e-15  Score=109.97  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS  139 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~  139 (197)
                      +|||+|||+|.++..+++..  .+++++|+++.+++.++++....     ..++++.++|+.+. +...++||+|++...
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLG--YEVTAVDQSSVGLAKAKQLAQEK-----GVKITTVQSNLADF-DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECCBTTTB-SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhCC--CeEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcChhhc-CCCcCCccEEEEEhh
Confidence            99999999999999988763  69999999999999999886541     23789999998663 333578999998542


Q ss_pred             CCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         140 DPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       140 ~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                       +.. ..  ....+++++.++|||||.+++...
T Consensus       104 -~~~-~~--~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A          104 -HLP-SS--LRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             -CCC-HH--HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             -cCC-HH--HHHHHHHHHHHhcCCCcEEEEEEe
Confidence             221 11  126799999999999999999863

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.54  E-value=1.3e-14  Score=118.17  Aligned_cols=109  Identities=19%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||+|||+|.++..+++. +..+++++|+++ +++.|+++....  + ..++++++++|+.+. +.+.++||+|+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKAN--K-LDHVVTIIKGKVEEV-ELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHT--T-CTTTEEEEESCTTTC-CCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHc--C-CCCcEEEEECcHHHc-cCCCCceEEEE
Confidence            35679999999999999999887 446999999995 999999876542  1 124699999998774 33357999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++..+....... .+.+++.+.++|||||+++...
T Consensus       139 s~~~~~~l~~~~~-~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          139 SEWMGYCLFYESM-LNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             ECCCBBTBTBTCC-HHHHHHHHHHHEEEEEEEESCE
T ss_pred             EccccccccCchh-HHHHHHHHHHhCCCCCEEcccc
Confidence            9876433322111 2678999999999999997543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.54  E-value=1.5e-14  Score=117.08  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCC-----CCC--CCCCeEEEEcchHHHHh-h
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMA-----VGL--SDPRLTVHVGDGFRFMS-E  126 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~-----~~~--~~~~~~~~~~d~~~~~~-~  126 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.|++++...+     +..  ...++++..+|+.+... .
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            56679999999999999998876 455799999999999999999865210     010  12579999999876431 2


Q ss_pred             cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         127 HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       127 ~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      ..++||+|+++++.++         .+++++.++|+|||.+++...+    .+.....++.+++
T Consensus       184 ~~~~fD~V~~~~~~~~---------~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~  234 (336)
T 2b25_A          184 KSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVN----ITQVIELLDGIRT  234 (336)
T ss_dssp             ----EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCHH---------HHHHHHHHhcCCCcEEEEEeCC----HHHHHHHHHHHHh
Confidence            2457999999875322         2679999999999999986543    4555566665553

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.53  E-value=6.5e-15  Score=116.47  Aligned_cols=111  Identities=23%  Similarity=0.248  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++...  + ...+++++++|+.+. +. ..++||+|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~~~~~~fD~v  137 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM--K-RRFKVFFRAQDSYGR-HMDLGKEFDVI  137 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS--C-CSSEEEEEESCTTTS-CCCCSSCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhc--C-CCccEEEEECCcccc-ccCCCCCcCEE
Confidence            466799999999999988877653 359999999999999999987542  1 124789999998763 22 35789999


Q ss_pred             EECCCCCC--CCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPV--GPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~--~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++....++  .....  ...+++++.++|||||.+++...+
T Consensus       138 ~~~~~l~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          138 SSQFSFHYAFSTSES--LDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             EEESCGGGGGSSHHH--HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EECchhhhhcCCHHH--HHHHHHHHHHhcCCCCEEEEEECC
Confidence            99876554  21111  267999999999999999987633

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.53  E-value=8.2e-15  Score=113.73  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCC---------------------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPR---------------------  112 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~---------------------  112 (197)
                      .+.+|||+|||+|.++..+++.  .+..+++++|+|+.+++.|+++..... .++. .+                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-ARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-ccchhhhhhhhhcccccchhhhh
Confidence            4579999999999999988875  445799999999999999998764310 0000 01                     


Q ss_pred             ----eE-------------EEEcchHHHHhh----cCCceeEEEECCCCCCCCCcc-----cccHHHHHHHHhhcCCCcE
Q psy4592         113 ----LT-------------VHVGDGFRFMSE----HQQEFDVIITDSSDPVGPAES-----LFQASYFELMSRALRPGGI  166 (197)
Q Consensus       113 ----~~-------------~~~~d~~~~~~~----~~~~~D~I~~~~~~~~~~~~~-----l~~~~~~~~~~~~LkpgG~  166 (197)
                          ++             +.++|+.+....    ...+||+|+++++........     -....+++++.++|+|||+
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence                55             999998764421    234899999998754322210     1125799999999999999


Q ss_pred             EEEEc
Q psy4592         167 VCSQA  171 (197)
Q Consensus       167 l~~~~  171 (197)
                      +++..
T Consensus       210 l~~~~  214 (250)
T 1o9g_A          210 IAVTD  214 (250)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            99843

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.53  E-value=2.6e-14  Score=114.82  Aligned_cols=103  Identities=23%  Similarity=0.297  Sum_probs=81.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||||||+|.++..+++..+ ..+++++|+++++++.|++++...    ..+++++..+|+.+.++. .++||+|
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----g~~~v~~~~~d~~~~~~~-~~~fD~I  148 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL----GIENVIFVCGDGYYGVPE-FSPYDVI  148 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCeEEEECChhhcccc-CCCeEEE
Confidence            4567999999999999999887654 357999999999999999987542    224699999998774432 4689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++.+.+..+          +.+.+.|||||++++....
T Consensus       149 v~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          149 FVTVGVDEVP----------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EECSBBSCCC----------HHHHHHEEEEEEEEEEBCB
T ss_pred             EEcCCHHHHH----------HHHHHhcCCCcEEEEEECC
Confidence            9998765432          5678899999999997643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=6.1e-14  Score=103.87  Aligned_cols=104  Identities=21%  Similarity=0.280  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++++         +++++++|+.+. +...++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~---------~~~~~~~d~~~~-~~~~~~~D~i~  112 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQG--HDVLGTDLDPILIDYAKQDFP---------EARWVVGDLSVD-QISETDFDLIV  112 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTS-CCCCCCEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCC--CcEEEEcCCHHHHHHHHHhCC---------CCcEEEcccccC-CCCCCceeEEE
Confidence            466799999999999999988773  699999999999999998752         478999998663 33357899999


Q ss_pred             ECC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++ ..+......  ...+++.+.++|+|||.+++....
T Consensus       113 ~~~~~~~~~~~~~--~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          113 SAGNVMGFLAEDG--REPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             ECCCCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ECCcHHhhcChHH--HHHHHHHHHHHhCCCCEEEEEeCC
Confidence            984 333332211  167999999999999999987643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.53  E-value=3.6e-14  Score=109.05  Aligned_cols=115  Identities=19%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             HHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .++..+..+...++.+|||+|||+|.++..++.. .+..+|+++|+++.+++.+.+....      ..++.++++|+...
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~  137 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFP  137 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCG
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccc
Confidence            3444444333456789999999999999988864 3457999999999886543332221      24799999998753


Q ss_pred             Hhh--cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         124 MSE--HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       124 ~~~--~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...  ..++||+|++|.+.   +..   ...+.+.+.+.|||||.|++..
T Consensus       138 ~~~~~~~~~~D~I~~d~a~---~~~---~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          138 QSYKSVVENVDVLYVDIAQ---PDQ---TDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             GGTTTTCCCEEEEEECCCC---TTH---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhccccceEEEEecCCC---hhH---HHHHHHHHHHhCCCCeEEEEEE
Confidence            221  24689999999864   111   1334556677999999999874

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.53  E-value=2.9e-14  Score=117.18  Aligned_cols=108  Identities=24%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||+|||+|.++..+++.+ ..+++++|++ .+++.|++++...  ++ .++++++++|+.+.. . .++||+|+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~-~-~~~~D~Iv  134 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKAN--NL-DHIVEVIEGSVEDIS-L-PEKVDVII  134 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHT--TC-TTTEEEEESCGGGCC-C-SSCEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHc--CC-CCeEEEEECchhhcC-c-CCcceEEE
Confidence            456799999999999999998874 3599999999 9999999887542  12 246999999987642 2 27899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++..+....... ...+++.+.+.|||||.+++..
T Consensus       135 ~~~~~~~l~~e~~-~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          135 SEWMGYFLLRESM-FDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             ECCCBTTBTTTCT-HHHHHHHHHHHEEEEEEEESSE
T ss_pred             EcChhhcccchHH-HHHHHHHHHhhCCCCeEEEEec
Confidence            9875544332211 2678999999999999998754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.52  E-value=2.7e-14  Score=112.32  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=91.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++.+++.|++++.... +...++++++.+|+.+. ....++||+|
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-g~~~~~v~~~~~d~~~~-~~~~~~~D~v  175 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY-GQPPDNWRLVVSDLADS-ELPDGSVDRA  175 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH-TSCCTTEEEECSCGGGC-CCCTTCEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-CCCCCcEEEEECchHhc-CCCCCceeEE
Confidence            45679999999999999998874 445799999999999999999864310 00125799999998764 2234689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++.+     ++    .++++++.++|+|||.+++...+    .+.+.++...+++
T Consensus       176 ~~~~~-----~~----~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~~~l~~  218 (280)
T 1i9g_A          176 VLDML-----AP----WEVLDAVSRLLVAGGVLMVYVAT----VTQLSRIVEALRA  218 (280)
T ss_dssp             EEESS-----CG----GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred             EECCc-----CH----HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence            99764     22    35789999999999999997644    3556666666665

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.52  E-value=3.1e-14  Score=120.22  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=89.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++.+|||+|||+|+.+..++... +...|+++|+++.+++.+++++...    ...+++++++|+.++.....++||+|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~----g~~nv~~~~~D~~~~~~~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC----GISNVALTHFDGRVFGAAVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH----TCCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCCHHHhhhhccccCCEEE
Confidence            56799999999999999988753 3469999999999999999987643    224799999999876543457899999


Q ss_pred             ECCCCCCC----CCccc---c-----------cHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         136 TDSSDPVG----PAESL---F-----------QASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       136 ~~~~~~~~----~~~~l---~-----------~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      +|+|....    ..+..   +           ..++++++.++|||||++++.+++...
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~  251 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ  251 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence            99886321    11110   1           246889999999999999998876443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.52  E-value=7.3e-15  Score=112.35  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I  134 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++.         ++++++++|+.+.++.. .++||+|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDFSPELLKLARANA---------PHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHC---------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhC---------CCceEEEcchhhccCCcCCCCEEEE
Confidence            456799999999999999998873  69999999999999999873         36899999985545544 6799999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +++.      +.    ..+++++.++|||||.++.
T Consensus       116 ~~~~------~~----~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A          116 VSRR------GP----TSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             EEES------CC----SGGGGGHHHHEEEEEEEEE
T ss_pred             EeCC------CH----HHHHHHHHHHcCCCcEEEE
Confidence            9872      11    4577899999999999983

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.52  E-value=7.2e-14  Score=106.83  Aligned_cols=99  Identities=21%  Similarity=0.294  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++...     . +++++.+|+.+.++ ..++||+|+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----~-~v~~~~~d~~~~~~-~~~~fD~v~  139 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY-----N-NIKLILGDGTLGYE-EEKPYDRVV  139 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC-----S-SEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc-----C-CeEEEECCcccccc-cCCCccEEE
Confidence            456799999999999999988765  69999999999999999987642     2 79999999876332 246899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++...+..+          +++.++|+|||.+++....
T Consensus       140 ~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          140 VWATAPTLL----------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             ESSBBSSCC----------HHHHHTEEEEEEEEEEECS
T ss_pred             ECCcHHHHH----------HHHHHHcCCCcEEEEEEcC
Confidence            988654332          4688999999999987644

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=106.18  Aligned_cols=121  Identities=14%  Similarity=0.096  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC---------ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV---------ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMS  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~---------~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~  125 (197)
                      +++.+|||+|||+|.++..+++..+.         .+++++|+++..               ..++++++ .+|+.+...
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------------cCCCCeEEEeccCCCHHH
Confidence            45679999999999999999876543         689999999831               11357788 888654321


Q ss_pred             -------hcCCceeEEEECCCCCCCCCccccc-------HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         126 -------EHQQEFDVIITDSSDPVGPAESLFQ-------ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       126 -------~~~~~~D~I~~~~~~~~~~~~~l~~-------~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                             ...++||+|+++...+.........       ..+++++.++|||||.+++.....    +....+...++..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~~  161 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG----SQSRRLQRRLTEE  161 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS----GGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC----ccHHHHHHHHHHH
Confidence                   1235899999987544322211111       368899999999999999975432    2334445555555


Q ss_pred             CCcc
Q psy4592         192 FPRL  195 (197)
Q Consensus       192 f~~v  195 (197)
                      |..+
T Consensus       162 f~~v  165 (196)
T 2nyu_A          162 FQNV  165 (196)
T ss_dssp             EEEE
T ss_pred             hcce
Confidence            5443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.52  E-value=4.2e-14  Score=114.70  Aligned_cols=107  Identities=21%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++.+ ..+++++|+++ +++.|++++...  ++ .++++++.+|+.+. +...++||+|+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv  136 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLN--KL-EDTITLIKGKIEEV-HLPVEKVDVII  136 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHT--TC-TTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHc--CC-CCcEEEEEeeHHHh-cCCCCcEEEEE
Confidence            456799999999999999988874 46999999997 999999876542  11 25899999998763 33347899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +++..+...... ....++..+.++|||||.++.
T Consensus       137 s~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          137 SEWMGYFLLFES-MLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             ECCCBTTBTTTC-HHHHHHHHHHHHEEEEEEEES
T ss_pred             EcCchhhccCHH-HHHHHHHHHHhhcCCCcEEEc
Confidence            987422221111 126789999999999999983

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.51  E-value=9.3e-15  Score=112.79  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=78.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhhc-CC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSEH-QQ  129 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~-~~  129 (197)
                      ++.+|||||||+|..+..+++.    .+..+|++||+++.+++.|+..         .++++++++|+.+.  ++.. ..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---------~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---------MENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---------CCceEEEECcchhHHHHHhhccC
Confidence            4579999999999999998875    4558999999999998887621         25799999998764  3332 23


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHh-hcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSR-ALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~-~LkpgG~l~~~~  171 (197)
                      +||+|+++.. |.  .    ...+++++.+ +|||||++++..
T Consensus       152 ~fD~I~~d~~-~~--~----~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNA-HA--N----TFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESS-CS--S----HHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCc-hH--h----HHHHHHHHHHhhCCCCCEEEEEe
Confidence            7999999875 21  1    2678999997 999999999853

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=4.5e-14  Score=106.83  Aligned_cols=103  Identities=25%  Similarity=0.247  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...    ..+++++..+|+...++ ..++||+|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~-~~~~fD~v  150 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL----GYDNVIVIVGDGTLGYE-PLAPYDRI  150 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----TCTTEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEECCcccCCC-CCCCeeEE
Confidence            456799999999999999988764 3369999999999999999886532    22469999999854333 24689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++...+..+          +++.++|||||.+++....
T Consensus       151 ~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          151 YTTAAGPKIP----------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EESSBBSSCC----------HHHHHTEEEEEEEEEEESS
T ss_pred             EECCchHHHH----------HHHHHHcCCCcEEEEEECC
Confidence            9988654432          5789999999999997654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.51  E-value=4.7e-14  Score=117.37  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH-------HhhcCCCCCCCCCCCeEEEEcchHH---HHh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS-------KKYLPGMAVGLSDPRLTVHVGDGFR---FMS  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a-------~~~~~~~~~~~~~~~~~~~~~d~~~---~~~  125 (197)
                      ..+.+|||||||+|.++..+++..+..++++||+++.+++.|       ++++...  ++...+++++++|...   .+.
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~--Gl~~~nV~~i~gD~~~~~~~~~  318 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY--GMRLNNVEFSLKKSFVDNNRVA  318 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT--TBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc--CCCCCceEEEEcCccccccccc
Confidence            566799999999999999998865546899999999999988       7766432  1113589999876432   121


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ...++||+|+++.+.. .++.    ...++++.+.|||||.+++.
T Consensus       319 ~~~~~FDvIvvn~~l~-~~d~----~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          319 ELIPQCDVILVNNFLF-DEDL----NKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHGGGCSEEEECCTTC-CHHH----HHHHHHHHTTCCTTCEEEES
T ss_pred             cccCCCCEEEEeCccc-cccH----HHHHHHHHHhCCCCeEEEEe
Confidence            1236899999976542 2221    56789999999999999985

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.51  E-value=4e-14  Score=109.21  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++++++.|+++....  + -.+++++..+|+.+... ..++||+|+
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~-~~~~~D~v~  163 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKF--N-LGKNVKFFNVDFKDAEV-PEGIFHAAF  163 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHT--T-CCTTEEEECSCTTTSCC-CTTCBSEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc--C-CCCcEEEEEcChhhccc-CCCcccEEE
Confidence            45679999999999999998877  379999999999999999986532  1 12579999999876331 236799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP  193 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~  193 (197)
                      ++++     ++    ..+++++.++|+|||.+++....    .+....+...+++.|.
T Consensus       164 ~~~~-----~~----~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~  208 (248)
T 2yvl_A          164 VDVR-----EP----WHYLEKVHKSLMEGAPVGFLLPT----ANQVIKLLESIENYFG  208 (248)
T ss_dssp             ECSS-----CG----GGGHHHHHHHBCTTCEEEEEESS----HHHHHHHHHHSTTTEE
T ss_pred             ECCc-----CH----HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHhhCC
Confidence            9764     22    35789999999999999997643    3455566665554343

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.51  E-value=1e-12  Score=98.77  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...     ..+++++++|+.+.    .++||+|+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~----~~~~D~v~  117 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIVI  117 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECchHHc----CCCCCEEE
Confidence            456799999999999999988774 358999999999999999988652     12799999998763    25899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +|+|.+.....  ....+++.+.+.+  |+.+++
T Consensus       118 ~~~p~~~~~~~--~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          118 MNPPFGSQRKH--ADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             ECCCCSSSSTT--TTHHHHHHHHHHC--SEEEEE
T ss_pred             EcCCCccccCC--chHHHHHHHHHhc--CcEEEE
Confidence            99997665432  1267899999998  565544

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.51  E-value=8e-15  Score=114.08  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=82.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC-------------------------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-------------------------D  110 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-------------------------~  110 (197)
                      .++.+|||+|||+|.++..+++... .+++++|+++.+++.+++++.......+                         .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4557999999999999888776643 5999999999999999988753100000                         0


Q ss_pred             CCe-EEEEcchHHHHhhcC---CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         111 PRL-TVHVGDGFRFMSEHQ---QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       111 ~~~-~~~~~d~~~~~~~~~---~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .++ ++..+|+.+......   ++||+|++....+..+...-....+++++.++|||||++++..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            027 899999876433223   7899999987654221110012678999999999999998864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.50  E-value=7e-14  Score=106.81  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+..+++++|+++.+++.|+++....  ++ ..++++..+|+.+.++. .++||+|+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl-~~~i~~~~~d~l~~l~~-~~~~D~Iv   89 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH--GL-KEKIQVRLANGLAAFEE-TDQVSVIT   89 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TC-TTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CceEEEEECchhhhccc-CcCCCEEE
Confidence            4567999999999999999999877679999999999999999998653  22 24799999998665443 13699988


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +...     ...+ -.++++.+.+.|+++|+++++..
T Consensus        90 iaG~-----Gg~~-i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           90 IAGM-----GGRL-IARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             EEEE-----CHHH-HHHHHHHTGGGCTTCCEEEEEES
T ss_pred             EcCC-----ChHH-HHHHHHHHHHHhCCCCEEEEECC
Confidence            6432     1111 26789999999999999999754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.50  E-value=8.3e-14  Score=107.06  Aligned_cols=103  Identities=25%  Similarity=0.357  Sum_probs=80.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+ .+++++|+++.+++.|++++...    ..+++++..+|+...++. ..+||+|+
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~fD~Ii  163 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA----GVKNVHVILGDGSKGFPP-KAPYDVII  163 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc----CCCCcEEEECCcccCCCC-CCCccEEE
Confidence            4567999999999999999988765 79999999999999999987542    224699999997332222 34699999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ++...+..+          +++.+.|+|||.+++.....
T Consensus       164 ~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          164 VTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence            987643332          46889999999999987553

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.50  E-value=6.5e-14  Score=116.92  Aligned_cols=115  Identities=20%  Similarity=0.287  Sum_probs=88.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I  134 (197)
                      .++.+|||+|||+|+.+..+++..+..+++++|+++.+++.+++++...     +.+++++++|+.+... ...++||+|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~-----g~~~~~~~~D~~~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL-----GMKATVKQGDGRYPSQWCGEQQFDRI  319 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT-----TCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc-----CCCeEEEeCchhhchhhcccCCCCEE
Confidence            4567999999999999999988665579999999999999999987652     2257899999876543 234689999


Q ss_pred             EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      ++|+|.....    .+..              ...++++++.+.|||||++++.+++..
T Consensus       320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            9999864321    1110              014789999999999999999876643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.50  E-value=3.4e-14  Score=115.07  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++.. ++  +..+++++|+++.+++.|++++...  ++ .++++++++|+.+++    ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n--~l-~~~v~~~~~D~~~~~----~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLN--KL-EHKIIPILSDVREVD----VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHT--TC-TTTEEEEESCGGGCC----CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEECChHHhc----CCCcEEE
Confidence            4567999999999999999 76  3479999999999999999997652  12 247999999988754    7899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      +|+|...        .++++.+.++|+|||.+++.++++.
T Consensus       264 ~dpP~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          264 MNLPKFA--------HKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             ECCTTTG--------GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             ECCcHhH--------HHHHHHHHHHcCCCCEEEEEEeecC
Confidence            9986321        3588999999999999998776654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.49  E-value=4.3e-14  Score=109.79  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=63.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh-c---CCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE-H---QQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~---~~~~  131 (197)
                      ++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...  ++ ..+++++++|+.+. ... .   .++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--NL-SDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--TC-TTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--CC-CccEEEEEcchhhhhhhhhhcccCCcc
Confidence            457999999999999988876544479999999999999999987542  11 23699999997652 211 1   2589


Q ss_pred             eEEEECCCCCC
Q psy4592         132 DVIITDSSDPV  142 (197)
Q Consensus       132 D~I~~~~~~~~  142 (197)
                      |+|++++|.+.
T Consensus       142 D~i~~npp~~~  152 (254)
T 2h00_A          142 DFCMCNPPFFA  152 (254)
T ss_dssp             SEEEECCCCC-
T ss_pred             cEEEECCCCcc
Confidence            99999988654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.49  E-value=6.7e-14  Score=109.64  Aligned_cols=110  Identities=17%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHH------HHHHHHhhcCCCCCCCCCCCeEEEEcc-hHH-HHhh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNR------VIEVSKKYLPGMAVGLSDPRLTVHVGD-GFR-FMSE  126 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~d-~~~-~~~~  126 (197)
                      .++.+|||||||+|.++..+++.. +..+++++|+++.      +++.|++++...  + ..++++++.+| ... .++.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG--P-LGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS--T-TGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc--C-CCCceEEEECChhhhccCCC
Confidence            566799999999999999988763 5479999999997      999999887542  1 12579999998 321 1233


Q ss_pred             cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         127 HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       127 ~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..++||+|++....++.++.    ..+++.+.++++|||.+++...
T Consensus       119 ~~~~fD~v~~~~~l~~~~~~----~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          119 ADQHFDRVVLAHSLWYFASA----NALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             TTCCCSEEEEESCGGGSSCH----HHHHHHHHHHTTTCSEEEEEEE
T ss_pred             CCCCEEEEEEccchhhCCCH----HHHHHHHHHHhCCCCEEEEEEe
Confidence            45789999998877666554    4577777788888999998653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.49  E-value=4.8e-14  Score=115.29  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~I  134 (197)
                      ..+.+|||||||+|.++..+++..+..+++++|+ |.+++.|++++...  + ..++++++.+|+.+.. +. +++||+|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~-p~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL--S-GSERIHGHGANLLDRDVPF-PTGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC--T-TGGGEEEEECCCCSSSCCC-CCCCSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc--C-cccceEEEEccccccCCCC-CCCcCEE
Confidence            3567999999999999999998777789999999 99999999987642  1 1258999999976521 11 2689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....|..++..  ...++++++++|||||.+++..
T Consensus       253 ~~~~vlh~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          253 WMSQFLDCFSEEE--VISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEESCSTTSCHHH--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEechhhhCCHHH--HHHHHHHHHHhcCCCcEEEEEe
Confidence            9988776654432  1578999999999999998854

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.49  E-value=2.1e-14  Score=114.92  Aligned_cols=115  Identities=15%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC---CCCCCCeEEEEcchHHHH---hh--cC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV---GLSDPRLTVHVGDGFRFM---SE--HQ  128 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~d~~~~~---~~--~~  128 (197)
                      ++.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++......   .....+++++++|+.+..   +.  ..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            5679999999999999988875 347999999999999999987542100   001247899999987642   11  23


Q ss_pred             CceeEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         129 QEFDVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++||+|++....|+. .+.. ....+++++.++|||||.+++....
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYE-QADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHH-HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecchhhccCCHH-HHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999998877665 2211 1158999999999999999987543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.49  E-value=2e-14  Score=112.76  Aligned_cols=129  Identities=14%  Similarity=0.034  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE--EcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH--VGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~D~  133 (197)
                      +++.+|||+|||+|.++..+++.   .+|++||+++ ++..+++. +..... ...++.++  ++|+.++ +  .++||+
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l-~--~~~fD~  143 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRITES-YGWNIVKFKSRVDIHTL-P--VERTDV  143 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCCCB-TTGGGEEEECSCCTTTS-C--CCCCSE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhhhc-cCCCeEEEecccCHhHC-C--CCCCcE
Confidence            45679999999999999988876   5899999998 53222211 100000 11268888  8998763 2  578999


Q ss_pred             EEECCCCCCCCCcccccH---HHHHHHHhhcCCCc--EEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         134 IITDSSDPVGPAESLFQA---SYFELMSRALRPGG--IVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~---~~~~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      |+++.. +....+.+...   ..++.+.++|||||  .|++....+..  ..+...+..+++.|..++
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~--~~~~~~l~~l~~~f~~v~  208 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYS--VEVMERLSVMQRKWGGGL  208 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS--HHHHHHHHHHHHHHCCEE
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC--hhHHHHHHHHHHHcCCEE
Confidence            999987 44433211111   37889999999999  99987655322  333355566666665543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.49  E-value=8.5e-14  Score=106.23  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=81.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-----CCccEEEEEcCHHHHHHHHhhcCCCCC-CCCCCCeEEEEcchHHHHh---h
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-----SVESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFMS---E  126 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~d~~~~~~---~  126 (197)
                      .++.+|||+|||+|.++..+++..     +..+++++|+++.+++.|++++...+. .+..++++++.+|+.+...   .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            456799999999999999888754     346999999999999999988653200 0013579999999877431   2


Q ss_pred             cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         127 HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       127 ~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..++||+|+++...+.          +++.+.+.|||||++++...
T Consensus       159 ~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASASE----------LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBSS----------CCHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEc
Confidence            2468999999886542          23778999999999998764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.49  E-value=3.4e-15  Score=116.85  Aligned_cols=114  Identities=13%  Similarity=0.053  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC-------------------------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-------------------------D  110 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-------------------------~  110 (197)
                      .++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++.......+                         .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            355799999999997766555443 35799999999999999987643100000                         0


Q ss_pred             CCeE-EEEcchHHHHhh---cCCceeEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         111 PRLT-VHVGDGFRFMSE---HQQEFDVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       111 ~~~~-~~~~d~~~~~~~---~~~~~D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+++ ++.+|+.+..+.   ..++||+|++....++. ++..- ....+++++++|||||.|++..
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~-~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDA-YRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence            1233 888887763221   24689999999876552 22110 1578999999999999999975

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=6.4e-14  Score=114.95  Aligned_cols=105  Identities=14%  Similarity=0.215  Sum_probs=82.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      .+.+|||+| |+|.++..+++..+..+++++|+++.+++.|++++...  ++  .+++++++|+.+.++. ..++||+|+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~--g~--~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI--GY--EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--TC--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CC--CCEEEEEChhhhhchhhccCCccEEE
Confidence            467999999 99999999887655479999999999999999987642  11  2799999998774432 245899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEE-EEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIV-CSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l-~~~~  171 (197)
                      +|+|.+..   .  ...+++++.++|||||.+ ++..
T Consensus       247 ~~~p~~~~---~--~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETLE---A--IRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSHH---H--HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ECCCCchH---H--HHHHHHHHHHHcccCCeEEEEEE
Confidence            99975433   1  278999999999999944 5443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.49  E-value=2.4e-14  Score=112.87  Aligned_cols=128  Identities=14%  Similarity=0.082  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE--EcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH--VGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~D~  133 (197)
                      +++.+|||+|||+|.++..+++.   .+|++||+++ ++..+++. +..... ...++.++  ++|+.++ +  .++||+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l-~--~~~fD~  151 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-PRLVET-FGWNLITFKSKVDVTKM-E--PFQADT  151 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-CCCCCC-TTGGGEEEECSCCGGGC-C--CCCCSE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-hhhhhh-cCCCeEEEeccCcHhhC-C--CCCcCE
Confidence            45679999999999999998877   5899999999 54333221 100000 11278899  8998763 2  578999


Q ss_pred             EEECCCCCCCCCccccc---HHHHHHHHhhcCCCc--EEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         134 IITDSSDPVGPAESLFQ---ASYFELMSRALRPGG--IVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~---~~~~~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      |+++.. +....+.+..   ...++.+.++|||||  .|++....+..  ..+...++.+++.|..+
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~--~~~~~~l~~l~~~f~~v  215 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYS--CDVLEALMKMQARFGGG  215 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCS--HHHHHHHHHHHHHHCCE
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCc--hhHHHHHHHHHHHcCCE
Confidence            999987 4443321111   136889999999999  99986655322  32334455565555544

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.49  E-value=1e-13  Score=106.15  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  ++ ..++++..+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~--gl-~~~I~~~~gD~l~~~~~-~~~~D~Iv   95 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH--GL-TSKIDVRLANGLSAFEE-ADNIDTIT   95 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT--TC-TTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEECchhhcccc-ccccCEEE
Confidence            4567999999999999999998877679999999999999999998653  22 34799999998775532 23799988


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +...     ...+ -.++++...+.|+++|.|+++..
T Consensus        96 iaGm-----Gg~l-I~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           96 ICGM-----GGRL-IADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEE-----CHHH-HHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EeCC-----chHH-HHHHHHHHHHHhCcCCEEEEECC
Confidence            6432     1111 26788999999999999999753

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.48  E-value=2.4e-14  Score=108.65  Aligned_cols=110  Identities=16%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++++++.+.+...........++++++++|+.+ ++...++ |.|+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~-d~v~  103 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-LPPLSGV-GELH  103 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-CCSCCCE-EEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-CCCCCCC-CEEE
Confidence            4567999999999999999998776789999999999888532221110000123589999999877 3443445 7777


Q ss_pred             ECCCCC-----CCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDP-----VGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~-----~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +..+..     +.++.    ..++++++++|||||.+++..
T Consensus       104 ~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSS----PEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EESCCHHHHHHHHTSS----SHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccchhhhhhhhccH----HHHHHHHHHHcCCCcEEEEEe
Confidence            544311     11111    578999999999999999864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.48  E-value=4.5e-14  Score=115.63  Aligned_cols=107  Identities=21%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +++.|||||||+|.++..+++.+. .+|++||.++ +++.|++.....  ++ ..+++++.+|+++. .. ++++|+||+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n--~~-~~~i~~i~~~~~~~-~l-pe~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFN--GL-EDRVHVLPGPVETV-EL-PEQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHT--TC-TTTEEEEESCTTTC-CC-SSCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHc--CC-CceEEEEeeeeeee-cC-CccccEEEe
Confidence            567999999999999988887753 6999999996 888898876542  22 35899999998764 22 478999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+........... +.++....+.|||||.++...
T Consensus       156 E~~~~~l~~e~~l-~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          156 EWMGYGLLHESML-SSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CCCBTTBTTTCSH-HHHHHHHHHHEEEEEEEESCE
T ss_pred             ecccccccccchh-hhHHHHHHhhCCCCceECCcc
Confidence            8765444333322 678888889999999988544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.48  E-value=1.7e-13  Score=104.45  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             hHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCCCeEEEEcc
Q psy4592          42 SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGD  119 (197)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~d  119 (197)
                      .+..++..+.. ...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+.. +..++++++.+|
T Consensus        63 ~~~~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  141 (226)
T 1i1n_A           63 MHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD  141 (226)
T ss_dssp             HHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred             HHHHHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence            33444544431 12456799999999999999888753 4369999999999999999876531000 012479999999


Q ss_pred             hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       120 ~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.+... ..++||+|+++.+.+.          +++++.++|||||++++....
T Consensus       142 ~~~~~~-~~~~fD~i~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          142 GRMGYA-EEAPYDAIHVGAAAPV----------VPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             GGGCCG-GGCCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEEEESC
T ss_pred             cccCcc-cCCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEec
Confidence            875322 2468999999876422          236789999999999998754

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.48  E-value=4.9e-14  Score=107.73  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC------CccEEEEEcCHHHHHHHHhhcCCCCC-CCCCCCe
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS------VESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRL  113 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~~~~~  113 (197)
                      .....++..+.. ...++.+|||+|||+|.++..+++..+      ..+++++|+++++++.+++++...+. .+..+++
T Consensus        69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  147 (227)
T 1r18_A           69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  147 (227)
T ss_dssp             HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence            334445554421 124557999999999999998887533      25899999999999999988653100 0002479


Q ss_pred             EEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       114 ~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +++.+|+.+.++. .++||+|+++...+..          .+++.+.|||||++++....
T Consensus       148 ~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          148 LIVEGDGRKGYPP-NAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EEEESCGGGCCGG-GCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCcccCCCc-CCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence            9999998763322 3689999998865432          26789999999999998754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.47  E-value=9.2e-14  Score=108.32  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=79.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++..        .+  ++++|+.+ ++...++||+|++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~--------~~--~~~~d~~~-~~~~~~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV--------KN--VVEAKAED-LPFPSGAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC--------SC--EEECCTTS-CCSCTTCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC--CeEEEEeCCHHHHHHHHhhcC--------CC--EEECcHHH-CCCCCCCEEEEEE
Confidence            56799999999999999988773  689999999999999998753        12  78888765 3334578999998


Q ss_pred             CCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .... +..++.    ..+++++.++|||||.+++...+
T Consensus       121 ~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          121 LGDVLSYVENK----DKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             CSSHHHHCSCH----HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cchhhhccccH----HHHHHHHHHHcCCCeEEEEEeCC
Confidence            7542 333332    78999999999999999987644

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.47  E-value=7.9e-14  Score=105.94  Aligned_cols=100  Identities=18%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-HhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~D~I  134 (197)
                      .++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++.           .++..+|+.+. .+...++||+|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcCCCCCCCccCEE
Confidence            45679999999999999999887 4 79999999999999998753           15777887642 22234789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++....++.++.    ..+++++.++|+|||.+++...
T Consensus        98 ~~~~~l~~~~~~----~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           98 IFGDVLEHLFDP----WAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEESCGGGSSCH----HHHHHHTGGGEEEEEEEEEEEE
T ss_pred             EECChhhhcCCH----HHHHHHHHHHcCCCCEEEEEeC
Confidence            998776555544    6899999999999999999753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.47  E-value=9.8e-14  Score=112.01  Aligned_cols=107  Identities=22%  Similarity=0.235  Sum_probs=81.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...  ++ .++++++.+|+.+. +.+.++||+|+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv  110 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELN--GF-SDKITLLRGKLEDV-HLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHT--TC-TTTEEEEESCTTTS-CCSSSCEEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHc--CC-CCCEEEEECchhhc-cCCCCcccEEE
Confidence            35579999999999999988877 34699999999 5899998876542  11 24799999998763 33347899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ++++.+....... ...++..+.+.|||||.++.
T Consensus       111 s~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYFLLYESM-MDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTBSTTCC-HHHHHHHHHHHEEEEEEEES
T ss_pred             EeCchhhcccHHH-HHHHHHHHHhhcCCCeEEEE
Confidence            9876443322211 26788999999999999974

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.47  E-value=1.5e-13  Score=106.07  Aligned_cols=107  Identities=15%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  ++ ..++++..+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl-~~~I~v~~gD~l~~~~~-~~~~D~Iv   95 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS--GL-TEQIDVRKGNGLAVIEK-KDAIDTIV   95 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TC-TTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CceEEEEecchhhccCc-cccccEEE
Confidence            4567999999999999999998876679999999999999999997652  22 24799999998775532 23699988


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +...     ...+ -.++++...+.|+++|.|+++..
T Consensus        96 iagm-----Gg~l-I~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           96 IAGM-----GGTL-IRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             EEEE-----CHHH-HHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EeCC-----chHH-HHHHHHHHHHHhCCCCEEEEEcC
Confidence            6431     1111 26788999999999999999753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.47  E-value=3.8e-14  Score=108.60  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=79.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++++         ++++++++|+.+. +. .++||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~-~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDF-RL-GRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTC-CC-SSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHc-cc-CCCCcEEE
Confidence            456799999999999999988775  38999999999999999875         2588999998763 22 57899999


Q ss_pred             ECC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.. ..++.++.. ....++++++++|||||.+++..
T Consensus       106 ~~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          106 SMFSSVGYLKTTE-ELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             ECTTGGGGCCSHH-HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             EcCchHhhcCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence            543 333332211 11679999999999999999964

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.47  E-value=9.1e-15  Score=115.73  Aligned_cols=113  Identities=11%  Similarity=0.028  Sum_probs=76.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------------C--------------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------------D--------------  110 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------------~--------------  110 (197)
                      ++.+|||||||+|.....+... +..+|+++|+++.+++.|++++.......+            .              
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5679999999999954433332 236999999999999999887543100000            0              


Q ss_pred             CCeEEEEcchHHHHhh-----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         111 PRLTVHVGDGFRFMSE-----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~-----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ..++++.+|+.+.++.     ..++||+|++....++.....-....++++++++|||||+|++.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            0145677787653331     23569999998876552211001267999999999999999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.46  E-value=5.4e-13  Score=109.30  Aligned_cols=102  Identities=8%  Similarity=0.030  Sum_probs=80.2

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-C--------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-Q--------  128 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~--------  128 (197)
                      +.+|||+|||+|.++..+++..  .+|+++|+++.+++.|++++...    ..++++++.+|+.+.++.. .        
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~n----g~~~v~~~~~d~~~~~~~~~~~~~~~~l~  287 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAAN----HIDNVQIIRMAAEEFTQAMNGVREFNRLQ  287 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHT----TCCSEEEECCCSHHHHHHHSSCCCCTTGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHc----CCCceEEEECCHHHHHHHHhhcccccccc
Confidence            5789999999999999888743  69999999999999999987642    2248999999999876532 1        


Q ss_pred             ------CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         129 ------QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       129 ------~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                            .+||+|++|||...          +.+++.+.|+++|.+++.++++.
T Consensus       288 ~~~~~~~~fD~Vv~dPPr~g----------~~~~~~~~l~~~g~ivyvsc~p~  330 (369)
T 3bt7_A          288 GIDLKSYQCETIFVDPPRSG----------LDSETEKMVQAYPRILYISCNPE  330 (369)
T ss_dssp             GSCGGGCCEEEEEECCCTTC----------CCHHHHHHHTTSSEEEEEESCHH
T ss_pred             ccccccCCCCEEEECcCccc----------cHHHHHHHHhCCCEEEEEECCHH
Confidence                  37999999997431          11456667789999998887753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.46  E-value=4.2e-13  Score=100.46  Aligned_cols=90  Identities=19%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.         +++++++|+.+.    .++||+|+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~----~~~~D~v~  115 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI----SGKYDTWI  115 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC----CCCEEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC----CCCeeEEE
Confidence            45679999999999999998877 44579999999999999999862         689999998763    26899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRAL  161 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~L  161 (197)
                      ++++.++.....  ...+++.+.+.+
T Consensus       116 ~~~p~~~~~~~~--~~~~l~~~~~~~  139 (200)
T 1ne2_A          116 MNPPFGSVVKHS--DRAFIDKAFETS  139 (200)
T ss_dssp             ECCCC---------CHHHHHHHHHHE
T ss_pred             ECCCchhccCch--hHHHHHHHHHhc
Confidence            999987654321  257899999998

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.46  E-value=1.3e-13  Score=107.76  Aligned_cols=97  Identities=21%  Similarity=0.327  Sum_probs=78.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|+++.         +++.+..+|+.+ ++...++||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~-~~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHR-LPFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTS-CSBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhh-CCCCCCceeEEE
Confidence            4567999999999999999988755579999999999999998874         357889999765 333457899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +...           ..+++++.++|||||.+++....
T Consensus       154 ~~~~-----------~~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          154 RIYA-----------PCKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             EESC-----------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred             EeCC-----------hhhHHHHHHhcCCCcEEEEEEcC
Confidence            8543           12579999999999999987644

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.45  E-value=1.3e-13  Score=115.84  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~  133 (197)
                      .++.+|||+|||+|+.+..++...+. .+++++|+++.+++.+++++...    ..++++++++|+.+... ...++||+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~fD~  333 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM----GIKIVKPLVKDARKAPEIIGEEVADK  333 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT----TCCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc----CCCcEEEEEcChhhcchhhccCCCCE
Confidence            45679999999999999998875443 69999999999999999987643    23479999999876432 12267999


Q ss_pred             EEECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         134 IITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       134 I~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      |++|+|.....    .+..              ...++++++.+.|||||.+++.+++...
T Consensus       334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~  394 (450)
T 2yxl_A          334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK  394 (450)
T ss_dssp             EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            99998763321    1100              0146899999999999999998766443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.45  E-value=6.3e-14  Score=113.82  Aligned_cols=108  Identities=13%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...  + ..++++++.+|+.+......+.||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--D-LGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--T-CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc--C-CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            67999999999999999998777789999999 88999999876532  1 12479999999876432134569999998


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...|..++..  ...++++++++|+|||++++..
T Consensus       256 ~vlh~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          256 DCLHYFDARE--AREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             SCGGGSCHHH--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCCHHH--HHHHHHHHHHHcCCCCEEEEEE
Confidence            8776654432  1679999999999999998864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.45  E-value=2.6e-13  Score=110.39  Aligned_cols=107  Identities=21%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++. +..+++++|+++ +++.|++++...  ++ .++++++.+|+.+. +. .++||+|+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~-~~-~~~~D~Iv  121 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN--NL-TDRIVVIPGKVEEV-SL-PEQVDIII  121 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHT--TC-TTTEEEEESCTTTC-CC-SSCEEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHc--CC-CCcEEEEEcchhhC-CC-CCceeEEE
Confidence            35679999999999999998876 446999999996 888888876532  11 25899999998763 22 36899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.+.+......  ..+.+.++++.|||||.+++..
T Consensus       122 s~~~~~~~~~~~--~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          122 SEPMGYMLFNER--MLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             ECCCBTTBTTTS--HHHHHHHGGGGEEEEEEEESCE
T ss_pred             EeCchhcCChHH--HHHHHHHHHhhcCCCeEEEEec
Confidence            997754432221  1567788999999999998654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.45  E-value=1e-13  Score=110.80  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEc----CHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHhhcCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEI----DNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMSEHQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~  130 (197)
                      +++.+|||+|||+|.++..+++.   .+|++||+    ++.+++.+.  ...    ...+++.++++ |+.+.   ..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~----~~~~~v~~~~~~D~~~l---~~~~  148 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MST----YGWNLVRLQSGVDVFFI---PPER  148 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCS----TTGGGEEEECSCCTTTS---CCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhh----cCCCCeEEEeccccccC---CcCC
Confidence            45679999999999999998877   48999999    554432111  111    11257999999 87653   2468


Q ss_pred             eeEEEECCCCCCCCCcccccH---HHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         131 FDVIITDSSDPVGPAESLFQA---SYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~---~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      ||+|++|...+ .........   ..++.+.++|||||.|++....+.  ......++..++..|..+
T Consensus       149 fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~--~~~~~~~l~~l~~~f~~v  213 (305)
T 2p41_A          149 CDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY--MSSVIEKMEALQRKHGGA  213 (305)
T ss_dssp             CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC--SHHHHHHHHHHHHHHCCE
T ss_pred             CCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC--CchHHHHHHHHHHHcCCE
Confidence            99999998754 211111001   468888999999999998654432  234455666666666654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.45  E-value=8.2e-14  Score=112.39  Aligned_cols=106  Identities=19%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||+|||+|.++..+++..+..+++++|+ |.+++.+++++...  + ..+++++..+|+.+   ..+.+||+|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~---~~p~~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT--G-LSGRAQVVVGSFFD---PLPAGAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--T-CTTTEEEEECCTTS---CCCCSCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--C-cCcCeEEecCCCCC---CCCCCCcEEEE
Confidence            457999999999999999988777789999999 99999999876532  1 13589999999753   11238999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....|..+++.  ..+++++++++|+|||++++..
T Consensus       242 ~~vlh~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHDWDDLS--AVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGGSCHHH--HHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ehhhccCCHHH--HHHHHHHHHHhcCCCCEEEEEe
Confidence            88776655432  1679999999999999998864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.45  E-value=2e-13  Score=107.99  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=83.4

Q ss_pred             EEEEcCee-eeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC
Q psy4592          26 ALILDGII-QCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM  104 (197)
Q Consensus        26 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~  104 (197)
                      .+.+++.. .+.++..+....++..+..  ...+.+|||+|||||.++..+++. +..+|++||+++.|++.+.+..   
T Consensus        55 ~I~v~g~~~~yvsrg~~Kl~~~l~~~~~--~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~---  128 (291)
T 3hp7_A           55 ELKLKGEKLRYVSRGGLKLEKALAVFNL--SVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD---  128 (291)
T ss_dssp             CEEETTCCCCSSSTTHHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC---
T ss_pred             EEEEcccccccccchHHHHHHHHHhcCC--CccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC---
Confidence            34444432 2334455555566665543  245679999999999999988877 3469999999999998855432   


Q ss_pred             CCCCCCCCeEE-EEcchHHHHhh--cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         105 AVGLSDPRLTV-HVGDGFRFMSE--HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       105 ~~~~~~~~~~~-~~~d~~~~~~~--~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                            +++.. ...+++.....  +..+||+|++|..++..       ...+.+++++|||||.+++.
T Consensus       129 ------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl-------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          129 ------DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL-------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             ------TTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEE
T ss_pred             ------cccceecccCceecchhhCCCCCCCEEEEEeeHhhH-------HHHHHHHHHHcCcCCEEEEE
Confidence                  22222 22343321111  12359999999865422       56889999999999999886

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.45  E-value=2.3e-13  Score=103.34  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+|||+|||+|.++..+++.      +++|+++.+++.++++           +++++.+|+.+ ++...++||+|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~-~~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAEN-LPLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTB-CCSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEccccc-CCCCCCCeeEEEEc
Confidence            679999999999999887654      8999999999999874           46788888765 23345689999998


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...++.++.    ..+++++.++|+|||.+++...
T Consensus       110 ~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A          110 TTICFVDDP----ERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             SCGGGSSCH----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chHhhccCH----HHHHHHHHHHcCCCcEEEEEEe
Confidence            876555443    6899999999999999998753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=1e-13  Score=113.64  Aligned_cols=97  Identities=23%  Similarity=0.319  Sum_probs=72.9

Q ss_pred             CCCCeEEEEeCC------chHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--
Q psy4592          56 PNPKKVLIVGGG------DGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--  126 (197)
Q Consensus        56 ~~~~~vLdiG~G------~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--  126 (197)
                      .++.+|||||||      +|+.+..+++. .+..+|+++|+++.+.      .       ..++++++++|+.+....  
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-------~~~rI~fv~GDa~dlpf~~~  281 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-------DELRIRTIQGDQNDAEFLDR  281 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-------CBTTEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-------cCCCcEEEEecccccchhhh
Confidence            456899999999      66666666653 4668999999999972      1       235899999998763111  


Q ss_pred             ---cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         127 ---HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       127 ---~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                         ..++||+|+++.. +...+    ...+|++++++|||||++++.
T Consensus       282 l~~~d~sFDlVisdgs-H~~~d----~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          282 IARRYGPFDIVIDDGS-HINAH----VRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHCCEEEEEECSC-CCHHH----HHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhcccCCccEEEECCc-ccchh----HHHHHHHHHHhcCCCeEEEEE
Confidence               1478999999864 33222    267899999999999999996

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.44  E-value=1.4e-12  Score=102.21  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             CCCeEEEEeCCc--hHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hc--C
Q psy4592          57 NPKKVLIVGGGD--GGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EH--Q  128 (197)
Q Consensus        57 ~~~~vLdiG~G~--G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~--~  128 (197)
                      ...+|||||||+  +..+.+++ +..+..+|++||.||.|++.|++.+...    ...+++++++|+++...   ..  .
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~----~~~~~~~v~aD~~~~~~~l~~~~~~  153 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST----PEGRTAYVEADMLDPASILDAPELR  153 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC----SSSEEEEEECCTTCHHHHHTCHHHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC----CCCcEEEEEecccChhhhhcccccc
Confidence            447999999997  44445444 3346689999999999999999987531    12479999999987521   11  2


Q ss_pred             Ccee-----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         129 QEFD-----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       129 ~~~D-----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      +.||     .|+++...|+.++..- ....++.+++.|+|||+|++...+.....+..+.+.+.++
T Consensus       154 ~~~D~~~p~av~~~avLH~l~d~~~-p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~  218 (277)
T 3giw_A          154 DTLDLTRPVALTVIAIVHFVLDEDD-AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYA  218 (277)
T ss_dssp             TTCCTTSCCEEEEESCGGGSCGGGC-HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cccCcCCcchHHhhhhHhcCCchhh-HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHH
Confidence            4465     5888888888766421 1579999999999999999976443333344455545444

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.44  E-value=4.7e-14  Score=114.55  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=89.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCC-----ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSV-----ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~-----~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      .+.+|||+|||+|.++..+++..+.     .+++++|+++.+++.|+.++...     +.++++.++|+...  ...++|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-----g~~~~i~~~D~l~~--~~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-----RQKMTLLHQDGLAN--LLVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-----TCCCEEEESCTTSC--CCCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-----CCCceEEECCCCCc--cccCCc
Confidence            4579999999999999888765332     68999999999999999986532     22688999997542  224689


Q ss_pred             eEEEECCCCCCCCCc------------cc--ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         132 DVIITDSSDPVGPAE------------SL--FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       132 D~I~~~~~~~~~~~~------------~l--~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      |+|++|||....+..            ..  ....+++.+.+.|+|||++++.+.+.+........+.+.+.
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~  274 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIK  274 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHH
Confidence            999999986432111            00  11258999999999999998887554444333444444443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.43  E-value=1.7e-13  Score=113.73  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=78.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..  .+++++|+++++++.|++...      ......+...++ +.++...++||+|+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~~~~-~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGI------RVRTDFFEKATA-DDVRRTEGPANVIY  176 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTC------CEECSCCSHHHH-HHHHHHHCCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCC------CcceeeechhhH-hhcccCCCCEEEEE
Confidence            456799999999999999988764  599999999999999988621      111111222333 33444457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||++++..
T Consensus       177 ~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          177 AANTLCHIPYV----QSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             EESCGGGCTTH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECChHHhcCCH----HHHHHHHHHHcCCCeEEEEEe
Confidence            99887776654    789999999999999999975

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.43  E-value=3.3e-13  Score=110.54  Aligned_cols=107  Identities=20%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..+..+++++|+ |.+++.|++++...  + ..++++++.+|+.+   ..+.+||+|+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-l~~~v~~~~~d~~~---~~p~~~D~v~  273 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR--G-LADRCEILPGDFFE---TIPDGADVYL  273 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--T-CTTTEEEEECCTTT---CCCSSCSEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc--C-cCCceEEeccCCCC---CCCCCceEEE
Confidence            4568999999999999999998777789999999 99999999876532  1 13589999999862   2223799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....+..++..  ..+++++++++|+|||++++..
T Consensus       274 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          274 IKHVLHDWDDDD--VVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHTTCCTTCEEEEEE
T ss_pred             hhhhhccCCHHH--HHHHHHHHHHHcCCCCEEEEEE
Confidence            988776654431  1369999999999999998854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.43  E-value=6.2e-13  Score=117.02  Aligned_cols=112  Identities=14%  Similarity=0.165  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCC--CCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMA--VGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .++.+|||||||+|.++..+++.. +..++++||+++.+++.|++++....  .....++++++++|+.+. +...++||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCee
Confidence            366799999999999999999876 44699999999999999988532100  001235899999998763 34457899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|++....++.+++.  ...++++++++|||| .+++.+
T Consensus       799 lVV~~eVLeHL~dp~--l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQ--ACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             EEEEESCGGGSCHHH--HHHHHHHHHHTTCCS-EEEEEE
T ss_pred             EEEEeCchhhCChHH--HHHHHHHHHHHcCCC-EEEEEe
Confidence            999987766655432  146899999999999 666654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.42  E-value=9.8e-13  Score=107.92  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++.+|||+|||+|.++.++++.....+++++|+|+.+++.|++++...  ++ .+++++.++|+.+. +...++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~--gl-~~~i~~~~~D~~~~-~~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA--GV-LDKIKFIQGDATQL-SQYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--TC-GGGCEEEECCGGGG-GGTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--CC-CCceEEEECChhhC-CcccCCcCEE
Confidence            35667999999999999999998765459999999999999999987642  11 24799999999874 3445789999


Q ss_pred             EECCCCCCCCC-----cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPA-----ESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~-----~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++|+|......     ..++ .++++.++++|  +|.+++.+
T Consensus       291 i~npPyg~r~~~~~~~~~ly-~~~~~~l~r~l--~g~~~~i~  329 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLY-MKFFNELAKVL--EKRGVFIT  329 (373)
T ss_dssp             EEECCCC------CCHHHHH-HHHHHHHHHHE--EEEEEEEE
T ss_pred             EECCCCCcccCcchhHHHHH-HHHHHHHHHHc--CCeEEEEE
Confidence            99998654211     1111 56888899988  55555443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.42  E-value=3.6e-13  Score=110.16  Aligned_cols=108  Identities=26%  Similarity=0.319  Sum_probs=84.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+ +.+++.|++++...  + ..++++++.+|+.+.+   ...||+|+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~---~~~~D~v~  253 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--G-LADRVTVAEGDFFKPL---PVTADVVL  253 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--T-CTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--C-CCCceEEEeCCCCCcC---CCCCCEEE
Confidence            4567999999999999999988766689999999 99999999886532  1 1247999999986522   23599999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +....+..++..  ...++++++++|||||++++...
T Consensus       254 ~~~vl~~~~~~~--~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          254 LSFVLLNWSDED--ALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EeccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEec
Confidence            988766544331  14799999999999999887543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.42  E-value=5.5e-13  Score=109.47  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-------------CCCCCCeEEEEcchHHH
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-------------GLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~d~~~~  123 (197)
                      .+.+|||+|||+|..+..+++..+..+++++|+++++++.+++|+.....             ++  .+++++++|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence            56799999999999999988865556899999999999999998764200             11  2499999999987


Q ss_pred             HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++||+|+.||+..        ...+++.+.+.|++||.+++..
T Consensus       125 ~~~~~~~fD~I~lDP~~~--------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFGS--------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHSTTCEEEEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Confidence            765446899999998521        1579999999999999888754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.41  E-value=7.6e-13  Score=107.84  Aligned_cols=107  Identities=20%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...  + ...+++++.+|+.+. +  ...+|+|+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~--~~~~D~v~  261 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--G-VADRMRGIAVDIYKE-S--YPEADAVL  261 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--T-CTTTEEEEECCTTTS-C--CCCCSEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc--C-CCCCEEEEeCccccC-C--CCCCCEEE
Confidence            4567999999999999999998777689999999 99999999886531  1 124699999998653 2  23459999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....+..++..  ...++++++++|||||++++..
T Consensus       262 ~~~vlh~~~d~~--~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          262 FCRILYSANEQL--STIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EechhccCCHHH--HHHHHHHHHHhcCCCCEEEEEe
Confidence            988766554421  2678999999999999997654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.39  E-value=3.3e-13  Score=108.83  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS  138 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~  138 (197)
                      .+|||+|||+|..+..+++..+..+++++|+ +.+++.+++++...  + ..++++++.+|+.+  + ..++||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~--~-~~~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL--L-AGERVSLVGGDMLQ--E-VPSNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH--H-HTTSEEEEESCTTT--C-CCSSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc--C-CCCcEEEecCCCCC--C-CCCCCCEEEEch
Confidence            7999999999999999988766689999999 99999999876431  0 12579999999865  2 236799999988


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..|..++..  ...++++++++|+|||++++..
T Consensus       242 vl~~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          242 IIGDLDEAA--SLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             CGGGCCHHH--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hccCCCHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence            776544331  1479999999999999998874

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.38  E-value=4.7e-13  Score=108.98  Aligned_cols=107  Identities=28%  Similarity=0.413  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|+ +.+++.+++++...  + ..++++++.+|+.+.+   ...||+|+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~---~~~~D~v~  254 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--G-LSDRVDVVEGDFFEPL---PRKADAII  254 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--T-CTTTEEEEECCTTSCC---SSCEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--C-CCCceEEEeCCCCCCC---CCCccEEE
Confidence            4567999999999999999988776679999999 99999999886532  1 1247999999986522   23599999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ...++++++++|||||++++..
T Consensus       255 ~~~vl~~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          255 LSFVLLNWPDHD--AVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEE
Confidence            987765543321  1479999999999999988764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.38  E-value=3.1e-12  Score=101.00  Aligned_cols=109  Identities=12%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEc-CHHHHHHHHhhc-----CCCCCCCC---CCCeEEEEcc----hHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEI-DNRVIEVSKKYL-----PGMAVGLS---DPRLTVHVGD----GFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~-~~~~~~~a~~~~-----~~~~~~~~---~~~~~~~~~d----~~~  122 (197)
                      ..+.+|||+|||+|.++..+++.. ..+++++|+ ++.+++.|+++.     ...  ++.   .+++++...|    ..+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~--~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSC--SSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCEEEECCTTSCTHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhc--ccccCCCCCeEEEEecCCCccHH
Confidence            355799999999999999888764 359999999 899999999987     321  111   0367887544    222


Q ss_pred             HHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcC---C--CcEEEEEc
Q psy4592         123 FMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR---P--GGIVCSQA  171 (197)
Q Consensus       123 ~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lk---p--gG~l~~~~  171 (197)
                      .... ..++||+|++.-..+..+..    ..+++.+.++|+   |  ||.+++..
T Consensus       155 ~~~~~~~~~fD~Ii~~dvl~~~~~~----~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          155 LQRCTGLQRFQVVLLADLLSFHQAH----DALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHHHSCSSBSEEEEESCCSCGGGH----HHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             HHhhccCCCCCEEEEeCcccChHHH----HHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            2221 25789999984333332222    679999999999   9  99876643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.38  E-value=2.6e-13  Score=109.34  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..+..+++++|++ .+++.|++++...  + ..++++++.+|+.+. +. .+.||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~-~~-~~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ--G-VASRYHTIAGSAFEV-DY-GNDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--T-CGGGEEEEESCTTTS-CC-CSCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--C-CCcceEEEecccccC-CC-CCCCcEEE
Confidence            45679999999999999999887666899999999 9999999876432  1 124799999998653 22 34599999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....+..++..  ..+++++++++|+|||++++..
T Consensus       238 ~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          238 LPNFLHHFDVAT--CEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcchhccCCHHH--HHHHHHHHHHhCCCCcEEEEEe
Confidence            977665543321  1579999999999999888764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.37  E-value=4.4e-13  Score=113.28  Aligned_cols=107  Identities=21%  Similarity=0.219  Sum_probs=80.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++. +..+++++|+++ +++.|++++...  ++ .++++++.+|+.+. +. .++||+|+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~--gl-~~~v~~~~~d~~~~-~~-~~~fD~Iv  229 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN--NL-TDRIVVIPGKVEEV-SL-PEQVDIII  229 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHT--TC-TTTEEEEESCTTTC-CC-SSCEEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHc--CC-CCcEEEEECchhhC-cc-CCCeEEEE
Confidence            35679999999999999988875 447999999998 999998876542  11 25899999998763 22 36899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++++.+......  ..+.+..+++.|||||.+++..
T Consensus       230 s~~~~~~~~~e~--~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          230 SEPMGYMLFNER--MLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CCCCHHHHTCHH--HHHHHHHGGGGEEEEEEEESCE
T ss_pred             EeCchHhcCcHH--HHHHHHHHHHhcCCCCEEEEEe
Confidence            987633222211  1456678899999999998644

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=1e-12  Score=104.02  Aligned_cols=91  Identities=23%  Similarity=0.338  Sum_probs=68.5

Q ss_pred             hHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH
Q psy4592          42 SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF  121 (197)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~  121 (197)
                      ....++..+..   .++.+|||||||+|.++..+++..  .+++++|+|+.+++.+++++...  + ..++++++++|+.
T Consensus        16 i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~v~~~~~D~~   87 (285)
T 1zq9_A           16 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT--P-VASKLQVLVGDVL   87 (285)
T ss_dssp             HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS--T-TGGGEEEEESCTT
T ss_pred             HHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEEccee
Confidence            33455544432   456799999999999999998774  58999999999999999987531  1 1257999999986


Q ss_pred             HHHhhcCCceeEEEECCCCCCC
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      +. +  ..+||+|+++++.++.
T Consensus        88 ~~-~--~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           88 KT-D--LPFFDTCVANLPYQIS  106 (285)
T ss_dssp             TS-C--CCCCSEEEEECCGGGH
T ss_pred             cc-c--chhhcEEEEecCcccc
Confidence            53 2  2479999999876553

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.37  E-value=1.2e-12  Score=107.76  Aligned_cols=104  Identities=24%  Similarity=0.294  Sum_probs=84.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC-eEEEEcchHHHHh-hcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR-LTVHVGDGFRFMS-EHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~d~~~~~~-~~~~~~D~  133 (197)
                      ++.+|||++||+|.++..+++.. +..+|+++|+++..++.+++|+..+  ++. .+ ++++.+|+.+++. ...++||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N--gl~-~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN--NIP-EDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT--TCC-GGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh--CCC-CceEEEEeCCHHHHHHHhhCCCCcE
Confidence            45799999999999999988753 3368999999999999999998753  222 24 9999999999887 54568999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |++||+.  .      ...+++.+.+.|+|||++++..
T Consensus       129 V~lDP~g--~------~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDPFG--T------PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECCSS--C------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCc--C------HHHHHHHHHHHhCCCCEEEEEe
Confidence            9999931  1      1568999999999999888764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.36  E-value=2.3e-12  Score=100.49  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-------CC-----CccEEEEEcCH---H-----------HHHHHHhhcCCCCCC--
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-------PS-----VESAYLVEIDN---R-----------VIEVSKKYLPGMAVG--  107 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-------~~-----~~~v~~ve~~~---~-----------~~~~a~~~~~~~~~~--  107 (197)
                      +++.+|||+|+|+|..+..+++.       .+     ..+++++|..|   +           +.+.+++.+..|...  
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34569999999999988775542       33     25899999887   3           333555544332100  


Q ss_pred             ------CC--CCCeEEEEcchHHHHhhcCC----ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         108 ------LS--DPRLTVHVGDGFRFMSEHQQ----EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       108 ------~~--~~~~~~~~~d~~~~~~~~~~----~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                            +.  ..+++++.+|+.+.++...+    +||+|+.|++.+.. ++.++++++++.++++|+|||+|+..+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CGGGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-ChhhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence                  11  24688999999998776433    79999999865543 4467889999999999999999997553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.36  E-value=3.2e-13  Score=112.07  Aligned_cols=119  Identities=19%  Similarity=0.298  Sum_probs=85.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|             .+++++++|+.++.  ..++||+|
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~~--~~~~fD~I  102 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLWE--PGEAFDLI  102 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGCC--CSSCEEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhcC--ccCCCCEE
Confidence            345699999999999999988653 347999999999987654             36889999987642  23689999


Q ss_pred             EECCCCCCCCC---------ccc----------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         135 ITDSSDPVGPA---------ESL----------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       135 ~~~~~~~~~~~---------~~l----------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      ++|||......         ...                ....+++.+.++|+|||.+++.....+......+.+.+.+.
T Consensus       103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~  182 (421)
T 2ih2_A          103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA  182 (421)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred             EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence            99998643221         000                01267999999999999999887665553334444444443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.35  E-value=5.1e-12  Score=101.10  Aligned_cols=116  Identities=13%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D  132 (197)
                      .++.+|||+|||+|+.+..++.. .+..+|+++|+++.+++.+++++...    ...+++++++|+.+.....  ..+||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA----GVSCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCChHhcCccccccCCCC
Confidence            45679999999999999998874 23479999999999999999988653    2257999999987643221  15799


Q ss_pred             EEEECCCCCCC------CCc---------cc-----ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         133 VIITDSSDPVG------PAE---------SL-----FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       133 ~I~~~~~~~~~------~~~---------~l-----~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      .|++|+|....      ++.         .+     ...++++.+.+.|+ ||+++..+++...
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~  239 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ  239 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence            99999885321      110         00     01346778888887 9999988776443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.35  E-value=1.8e-12  Score=99.77  Aligned_cols=117  Identities=14%  Similarity=0.095  Sum_probs=76.7

Q ss_pred             eccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE
Q psy4592          36 TEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV  115 (197)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~  115 (197)
                      .++..+...+++..+..  ...+++|||||||+|.++..+++.. ..+++++|++++|++.++++.+.         +..
T Consensus        18 vsrg~~kL~~~L~~~~~--~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~---------~~~   85 (232)
T 3opn_A           18 VSRGGLKLEKALKEFHL--EINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDER---------VVV   85 (232)
T ss_dssp             SSTTHHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTT---------EEE
T ss_pred             cCCcHHHHHHHHHHcCC--CCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCcc---------ccc
Confidence            34455555566665542  2456799999999999999988873 35999999999999998875432         111


Q ss_pred             E-EcchHHHH-hh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         116 H-VGDGFRFM-SE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       116 ~-~~d~~~~~-~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      . ..+++... .. ....+|.+.+|......       ..++++++++|||||.+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           86 MEQFNFRNAVLADFEQGRPSFTSIDVSFISL-------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ECSCCGGGCCGGGCCSCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             cccceEEEeCHhHcCcCCCCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEEEEE
Confidence            1 11221110 01 11236777766643221       568899999999999998853

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.34  E-value=8.7e-13  Score=103.81  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             CCCeEEEEeCCchH----hHHHHhcCCC----CccEEEEEcCHHHHHHHHhhcC---------------------CCCCC
Q psy4592          57 NPKKVLIVGGGDGG----VAREVLKHPS----VESAYLVEIDNRVIEVSKKYLP---------------------GMAVG  107 (197)
Q Consensus        57 ~~~~vLdiG~G~G~----~~~~l~~~~~----~~~v~~ve~~~~~~~~a~~~~~---------------------~~~~~  107 (197)
                      ++.+|||+|||||.    ++..+.+..+    ..+|+++|+|+++++.|++..-                     ....+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    4444444312    3589999999999999998641                     00000


Q ss_pred             -C--C---CCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         108 -L--S---DPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       108 -~--~---~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                       +  .   ..++.+.++|+.+. +.. .++||+|+|.....+..+..  ..+.++.+++.|+|||++++-
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-~~~~~~~fDlI~crnvliyf~~~~--~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFDKTT--QEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSCHHH--HHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCC-CCCcCCCeeEEEECCchHhCCHHH--HHHHHHHHHHHhCCCcEEEEE
Confidence             0  0   03689999998651 222 36899999976544332221  267999999999999999984

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.34  E-value=9.1e-13  Score=107.02  Aligned_cols=104  Identities=24%  Similarity=0.233  Sum_probs=78.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|||||||+|.++..+++..+..+++++|+ +.++.  +++....  + ..++++++.+|+.+   ..+ +||+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~--~-~~~~v~~~~~d~~~---~~p-~~D~v~  252 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP--D-VAGRWKVVEGDFLR---EVP-HADVHV  252 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG--G-GTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc--C-CCCCeEEEecCCCC---CCC-CCcEEE
Confidence            4567999999999999999998777789999999 55554  3333221  1 23579999999752   222 899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ...++++++++|||||++++..
T Consensus       253 ~~~vlh~~~d~~--~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          253 LKRILHNWGDED--SVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EehhccCCCHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence            988776654431  1479999999999999998864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.34  E-value=1.2e-11  Score=103.38  Aligned_cols=102  Identities=17%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D  132 (197)
                      ..+.+|||+|||+|.++..+++.  ..+++++|+++++++.|+++....    ..++++++++|+.+.+.   ...++||
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~----~~~~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLN----GLQNVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEECCHHHHhhhhhhhcCCCC
Confidence            35579999999999999999887  379999999999999999987542    22489999999877432   2346899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|++|+|....       .+.++.+.+ ++|++.+++..
T Consensus       359 ~Vv~dPPr~g~-------~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          359 KVLLDPARAGA-------AGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             EEEECCCTTCC-------HHHHHHHHH-HCCSEEEEEES
T ss_pred             EEEECCCCccH-------HHHHHHHHh-cCCCeEEEEEC
Confidence            99999974322       345555554 78988888753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.33  E-value=3.8e-12  Score=106.03  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..+++..  .+++++|+++++++.|++++...    ... ++++.+|+.+.++   .+||+|+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~n----gl~-v~~~~~d~~~~~~---~~fD~Vv  358 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEIN----NVD-AEFEVASDREVSV---KGFDTVI  358 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH----TCC-EEEEECCTTTCCC---TTCSEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc----CCc-EEEEECChHHcCc---cCCCEEE
Confidence            456799999999999999998763  69999999999999999987642    123 9999999877532   2799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|....      .+.+++.+. .|+|+|.+++..
T Consensus       359 ~dPPr~g~------~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          359 VDPPRAGL------HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             ECCCTTCS------CHHHHHHHH-HHCCSEEEEEES
T ss_pred             EcCCccch------HHHHHHHHH-hcCCCcEEEEEC
Confidence            99974211      145666665 489999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.31  E-value=6.2e-12  Score=102.40  Aligned_cols=106  Identities=18%  Similarity=0.202  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|+|||||+|.++..+++..|..+++..|. |.+++.|+++....    ..++++++.+|+.+   .+...+|+|+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~----~~~rv~~~~gD~~~---~~~~~~D~~~  249 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ----EEEQIDFQEGDFFK---DPLPEADLYI  249 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTT---SCCCCCSEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc----ccCceeeecCcccc---CCCCCceEEE
Confidence            3456999999999999999999888889988887 88999999987642    24689999999753   2345689999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ..++++++++.|+|||.+++.-
T Consensus       250 ~~~vlh~~~d~~--~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          250 LARVLHDWADGK--CSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             EESSGGGSCHHH--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             eeeecccCCHHH--HHHHHHHHHhhCCCCCEEEEEE
Confidence            988777665542  1578999999999999888764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.31  E-value=1.2e-11  Score=97.07  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=77.3

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      ++.||.....|         ......++..+..   .++ +|||||||+|.++..+++..  .+++++|+|+++++.+++
T Consensus        22 ~k~~GQnfL~d---------~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~   86 (271)
T 3fut_A           22 DKRFGQNFLVS---------EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEE   86 (271)
T ss_dssp             STTSSCCEECC---------HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred             cccCCccccCC---------HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence            45678877666         3333455554432   445 99999999999999999875  699999999999999999


Q ss_pred             hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592         100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      +++       ..+++++++|+.++.......+|.|++|+|.+..
T Consensus        87 ~~~-------~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~is  123 (271)
T 3fut_A           87 TLS-------GLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIA  123 (271)
T ss_dssp             HTT-------TSSEEEEESCGGGSCGGGSCTTEEEEEEECSSCC
T ss_pred             hcC-------CCCEEEEECChhhCChhhccCccEEEecCccccc
Confidence            875       2489999999976422222368999999986655

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.29  E-value=2.7e-12  Score=105.08  Aligned_cols=99  Identities=20%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|||||||+|.++..+++..+..+++++|+ |.+++.+++          .++++++.+|+.+  +.+ .. |+|+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~~p-~~-D~v~  266 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFD--GVP-KG-DAIF  266 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT--CCC-CC-SEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCC--CCC-CC-CEEE
Confidence            3457999999999999999998777789999999 888776543          2579999999865  222 23 9999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ..+++++++++|||||++++.-
T Consensus       267 ~~~vlh~~~~~~--~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          267 IKWICHDWSDEH--CLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EESCGGGBCHHH--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EechhhcCCHHH--HHHHHHHHHHHcCCCCEEEEEE
Confidence            988776554432  1478999999999999998864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.29  E-value=1.2e-11  Score=96.31  Aligned_cols=99  Identities=18%  Similarity=0.362  Sum_probs=71.2

Q ss_pred             CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      +.||..+..|         ......++..+..   .++.+|||||||+|.++..+++..  .+++++|+|+++++.++++
T Consensus         5 k~~GQnFL~d---------~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~   70 (255)
T 3tqs_A            5 KRFGQHFLHD---------SFVLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKK   70 (255)
T ss_dssp             ----CCEECC---------HHHHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHH
T ss_pred             CcCCcccccC---------HHHHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHH
Confidence            3466666555         3333455554432   456799999999999999999875  6999999999999999998


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeEEEECCCC
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDVIITDSSD  140 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~I~~~~~~  140 (197)
                      +..      .++++++++|+.++....   .++|| |++|+|.
T Consensus        71 ~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           71 YNQ------QKNITIYQNDALQFDFSSVKTDKPLR-VVGNLPY  106 (255)
T ss_dssp             HTT------CTTEEEEESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred             Hhh------CCCcEEEEcchHhCCHHHhccCCCeE-EEecCCc
Confidence            753      358999999998752211   35788 8888874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.29  E-value=7.6e-12  Score=94.48  Aligned_cols=86  Identities=21%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+.     .+++++|+++.                   ++++..+|+.+ ++...++||+|+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~v~  120 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQ-VPLEDESVDVAV  120 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTS-CSCCTTCEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEecccc-CCCCCCCEeEEE
Confidence            455799999999999988762     68999999987                   23466777655 333456899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|+ .+.    ..+++++.++|+|||.+++..
T Consensus       121 ~~~~l~~-~~~----~~~l~~~~~~L~~gG~l~i~~  151 (215)
T 2zfu_A          121 FCLSLMG-TNI----RDFLEEANRVLKPGGLLKVAE  151 (215)
T ss_dssp             EESCCCS-SCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eehhccc-cCH----HHHHHHHHHhCCCCeEEEEEE
Confidence            9887763 222    789999999999999999864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.29  E-value=9.2e-12  Score=98.89  Aligned_cols=88  Identities=17%  Similarity=0.303  Sum_probs=68.0

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ...++..+.   ..++.+|||||||+|.++..+++..  .++++||+|+++++.+++++..      .++++++++|+.+
T Consensus        39 ~~~Iv~~l~---~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~  107 (295)
T 3gru_A           39 VNKAVESAN---LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALK  107 (295)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTT
T ss_pred             HHHHHHhcC---CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhh
Confidence            344444443   2456799999999999999998773  6999999999999999988752      3589999999876


Q ss_pred             HHhhcCCceeEEEECCCCCC
Q psy4592         123 FMSEHQQEFDVIITDSSDPV  142 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~  142 (197)
                      . +....+||.|++|+|.++
T Consensus       108 ~-~~~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          108 V-DLNKLDFNKVVANLPYQI  126 (295)
T ss_dssp             S-CGGGSCCSEEEEECCGGG
T ss_pred             C-CcccCCccEEEEeCcccc
Confidence            3 222357999999987544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.29  E-value=2.1e-12  Score=105.80  Aligned_cols=98  Identities=20%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++          .++++++.+|+.+  +.  ..||+|+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~~--~~~D~v~  272 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----------LSGIEHVGGDMFA--SV--PQGDAMI  272 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT--CC--CCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----------cCCCEEEeCCccc--CC--CCCCEEE
Confidence            4567999999999999999998777778999999 988876643          1469999999865  22  2399999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +....|..++..  ...++++++++|||||++++.
T Consensus       273 ~~~~lh~~~d~~--~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          273 LKAVCHNWSDEK--CIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             EESSGGGSCHHH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EecccccCCHHH--HHHHHHHHHHhcCCCCEEEEE
Confidence            988776655431  137999999999999999886

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.28  E-value=3.4e-12  Score=103.72  Aligned_cols=99  Identities=18%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||||||+|.++..+++..+..+++++|+ |.+++.+++.          ++++++.+|+.+  +.  ..||+|+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~--~~--p~~D~v~  251 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFT--SI--PNADAVL  251 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTT--CC--CCCSEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccC--CC--CCccEEE
Confidence            3557999999999999999998767689999999 9998876541          359999999754  22  2499999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCC---CcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRP---GGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkp---gG~l~~~~  171 (197)
                      +....|..++..  ...++++++++|||   ||++++..
T Consensus       252 ~~~~lh~~~d~~--~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          252 LKYILHNWTDKD--CLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             eehhhccCCHHH--HHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            988776655431  13899999999999   99988864

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.28  E-value=4e-12  Score=103.93  Aligned_cols=99  Identities=20%  Similarity=0.174  Sum_probs=78.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|||||||+|.++..+++..+..+++++|+ |.+++.+++          .++++++.+|+.+  +.+ .. |+|+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~p-~~-D~v~  264 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFK--EVP-SG-DTIL  264 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT--CCC-CC-SEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCC--CCC-CC-CEEE
Confidence            3457999999999999999998777789999999 888776543          2579999999865  222 23 9999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ...++++++++|||||++++.-
T Consensus       265 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          265 MKWILHDWSDQH--CATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ehHHhccCCHHH--HHHHHHHHHHHcCCCCEEEEEE
Confidence            988776554432  1578999999999999998864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.27  E-value=5e-12  Score=100.73  Aligned_cols=102  Identities=22%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      .+.||..+..+         ......++..+.   ..++.+|||+|||+|.++..+++..  .+++++|+++.+++.+++
T Consensus        17 ~k~~Gq~fl~~---------~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~   82 (299)
T 2h1r_A           17 LYFQGQHLLKN---------PGILDKIIYAAK---IKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKK   82 (299)
T ss_dssp             ------CEECC---------HHHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHH
T ss_pred             hhccccceecC---------HHHHHHHHHhcC---CCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHH
Confidence            45566665433         223344444433   2456799999999999999998763  699999999999999998


Q ss_pred             hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCC
Q psy4592         100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPV  142 (197)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~  142 (197)
                      ++...    ..++++++++|+.+.   ..++||+|++|+|.++
T Consensus        83 ~~~~~----~~~~v~~~~~D~~~~---~~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A           83 RCLYE----GYNNLEVYEGDAIKT---VFPKFDVCTANIPYKI  118 (299)
T ss_dssp             HHHHT----TCCCEEC----CCSS---CCCCCSEEEEECCGGG
T ss_pred             HHHHc----CCCceEEEECchhhC---CcccCCEEEEcCCccc
Confidence            86431    225799999998653   2358999999987554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.27  E-value=5.1e-12  Score=100.04  Aligned_cols=128  Identities=15%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             hHHHHHHhhc--ccCCCCCCeEEEEeC------CchHhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC
Q psy4592          42 SYSEMIAFLP--LCSHPNPKKVLIVGG------GDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR  112 (197)
Q Consensus        42 ~~~~~~~~~~--~~~~~~~~~vLdiG~------G~G~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~  112 (197)
                      .|.++...+.  ....+++.+|||+||      |+|.  ..+++ ..+..+++++|+++.        .         ++
T Consensus        46 ~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---------~~  106 (290)
T 2xyq_A           46 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---------SD  106 (290)
T ss_dssp             HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---------CS
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---------CC
Confidence            3555554441  222356679999999      4476  32333 333479999999997        1         14


Q ss_pred             eEE-EEcchHHHHhhcCCceeEEEECCCCCCC----CC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHH
Q psy4592         113 LTV-HVGDGFRFMSEHQQEFDVIITDSSDPVG----PA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN  183 (197)
Q Consensus       113 ~~~-~~~d~~~~~~~~~~~~D~I~~~~~~~~~----~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  183 (197)
                      +++ +++|+.+. +. .++||+|++|++.+..    .+    ..+ .+..++.+.++|||||.|++.......    .+.
T Consensus       107 v~~~i~gD~~~~-~~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l-~~~~l~~a~r~LkpGG~~v~~~~~~~~----~~~  179 (290)
T 2xyq_A          107 ADSTLIGDCATV-HT-ANKWDLIISDMYDPRTKHVTKENDSKEGF-FTYLCGFIKQKLALGGSIAVKITEHSW----NAD  179 (290)
T ss_dssp             SSEEEESCGGGC-CC-SSCEEEEEECCCCCC---CCSCCCCCCTH-HHHHHHHHHHHEEEEEEEEEEECSSSC----CHH
T ss_pred             CEEEEECccccC-Cc-cCcccEEEEcCCccccccccccccchHHH-HHHHHHHHHHhcCCCcEEEEEEeccCC----HHH
Confidence            678 99998753 21 3689999999753321    01    111 157899999999999999986533211    235


Q ss_pred             HHHHHHhh-CCcc
Q psy4592         184 TLQHCASV-FPRL  195 (197)
Q Consensus       184 ~~~~~~~~-f~~v  195 (197)
                      +.+.+++. |..|
T Consensus       180 l~~~l~~~GF~~v  192 (290)
T 2xyq_A          180 LYKLMGHFSWWTA  192 (290)
T ss_dssp             HHHHHTTEEEEEE
T ss_pred             HHHHHHHcCCcEE
Confidence            55566655 6544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.26  E-value=1.2e-11  Score=101.75  Aligned_cols=114  Identities=13%  Similarity=0.078  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC--------------------------------------CccEEEEEcCHHHHHH
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS--------------------------------------VESAYLVEIDNRVIEV   96 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------------------------------------~~~v~~ve~~~~~~~~   96 (197)
                      ......+||.+||+|.++.+++....                                      ..+++++|+|+.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            45567999999999999888764321                                      1469999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC--CcEEEEEcCC
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP--GGIVCSQAGT  173 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp--gG~l~~~~~~  173 (197)
                      |++|....  ++ ..++++.++|+.+...  .++||+|++|||........-....+++.+.+.||+  ||.+++.+..
T Consensus       272 Ar~Na~~~--gl-~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  345 (384)
T 3ldg_A          272 ARKNAREV--GL-EDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND  345 (384)
T ss_dssp             HHHHHHHT--TC-TTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred             HHHHHHHc--CC-CCceEEEECChHHCCc--cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence            99987642  22 2469999999877432  358999999999754322111115577777777776  8888776544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.26  E-value=3.6e-12  Score=109.94  Aligned_cols=108  Identities=15%  Similarity=0.047  Sum_probs=80.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      ..+.+|||||||+|.++..|++.+  .+|+|||+++.+++.|+......    ...++++.++++++.... ..++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEEN----PDFAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTS----TTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHHhc----CCCceEEEECCHHHHhhhccCCCccEE
Confidence            356799999999999999999875  79999999999999999876542    124799999999887554 35789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....++.+++..  -..+..+.+.|+++|..++..
T Consensus       139 ~~~e~~ehv~~~~~--~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          139 IGLSVFHHIVHLHG--IDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             EEESCHHHHHHHHC--HHHHHHHHHHHHHHSSEEEEE
T ss_pred             EECcchhcCCCHHH--HHHHHHHHHHhccccceeeEE
Confidence            99877655433321  123345667788888655543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.24  E-value=9e-12  Score=91.31  Aligned_cols=88  Identities=18%  Similarity=0.215  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .+++.+|||+|||.               + .+|+++.|++.|+++..        .++++.++|+.+....  ..++||
T Consensus        10 ~~~g~~vL~~~~g~---------------v-~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------S-PVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             CCTTSEEEEEECTT---------------S-CHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCEEEEecCCc---------------e-eeeCCHHHHHHHHHhcc--------cCcEEEEechhcCccccCCCCCEe
Confidence            46678999999986               1 38999999999999864        2489999998874321  467899


Q ss_pred             EEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         133 VIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       133 ~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|++....++. ++.    ..++++++++|||||++++.
T Consensus        66 ~V~~~~~l~~~~~~~----~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           66 IILSGLVPGSTTLHS----AEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             EEEECCSTTCCCCCC----HHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECChhhhcccCH----HHHHHHHHHHCCCCEEEEEE
Confidence            99998877766 443    78999999999999999985

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.24  E-value=2.5e-12  Score=99.49  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=82.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +.+.+|||||||+|-++..+....+..+++++|+|+.+++.+++++..     .+.+..+...|....  ...++||+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~-----~g~~~~~~v~D~~~~--~p~~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR-----LNVPHRTNVADLLED--RLDEPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH-----TTCCEEEEECCTTTS--CCCSCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEeeeccc--CCCCCcchHH
Confidence            457899999999999998888777779999999999999999999865     235688999996432  2357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.-..|...+.+  ....+ .+.+.|+++|+++-.
T Consensus       204 ~lkti~~Le~q~--kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          204 LLKTLPCLETQQ--RGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             ETTCHHHHHHHS--TTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHhhhhh--hHHHH-HHHHHhCCCCEEEec
Confidence            988655532211  12455 899999999998854

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.24  E-value=7.1e-12  Score=103.40  Aligned_cols=114  Identities=15%  Similarity=0.102  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC--------------------------------------CccEEEEEcCHHHHHH
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS--------------------------------------VESAYLVEIDNRVIEV   96 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------------------------------------~~~v~~ve~~~~~~~~   96 (197)
                      ...+..|||.+||+|.++.+++....                                      ..+++++|+|+.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            45567999999999999888765321                                      1469999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC--CcEEEEEcCC
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP--GGIVCSQAGT  173 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp--gG~l~~~~~~  173 (197)
                      |++++...  ++ ..++++.++|+.+...  .++||+|++|||........-....+++.+.+.||+  ||.+++.+..
T Consensus       279 Ar~Na~~~--gl-~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  352 (393)
T 3k0b_A          279 AKQNAVEA--GL-GDLITFRQLQVADFQT--EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY  352 (393)
T ss_dssp             HHHHHHHT--TC-TTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred             HHHHHHHc--CC-CCceEEEECChHhCCC--CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99987642  22 2369999999877432  358999999998644311100013456666666655  8887776544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.24  E-value=5.7e-12  Score=103.75  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCC--------------------------------------CccEEEEEcCHHHHHH
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPS--------------------------------------VESAYLVEIDNRVIEV   96 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------------------------------------~~~v~~ve~~~~~~~~   96 (197)
                      .....+|||++||+|.++.+++....                                      ..+++++|+|+.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            34567999999999999988765321                                      1479999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC--CcEEEEEcCC
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP--GGIVCSQAGT  173 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp--gG~l~~~~~~  173 (197)
                      |++++...  ++ ..++++.++|+.+...  .++||+|++|||........-....+++.+.+.||+  ||.+++.+..
T Consensus       273 Ar~Na~~~--gl-~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          273 ARENAEIA--GV-DEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHHHHHHH--TC-GGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred             HHHHHHHc--CC-CCceEEEECChhhcCc--CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            99987642  11 2379999999877432  368999999998643211100114566777667766  8877776544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.22  E-value=2.4e-13  Score=105.33  Aligned_cols=116  Identities=18%  Similarity=0.242  Sum_probs=81.8

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ...++..+.   ..++.+|||+|||+|.++..+++..  .+++++|+|+.+++.++++...      .++++++++|+.+
T Consensus        18 ~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~------~~~v~~~~~D~~~   86 (245)
T 1yub_A           18 LNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQ   86 (245)
T ss_dssp             HHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTT
T ss_pred             HHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc------CCceEEEECChhh
Confidence            344444443   2456799999999999999988774  7999999999999998887642      3589999999876


Q ss_pred             HHhhc-CCceeEEEECCCCCCCCCc-------ccccHHHH----HHHHhhcCCCcEEEEEc
Q psy4592         123 FMSEH-QQEFDVIITDSSDPVGPAE-------SLFQASYF----ELMSRALRPGGIVCSQA  171 (197)
Q Consensus       123 ~~~~~-~~~~D~I~~~~~~~~~~~~-------~l~~~~~~----~~~~~~LkpgG~l~~~~  171 (197)
                      . +.. .++| .|++|+|.......       .......+    +.+.++|+|||.+.+..
T Consensus        87 ~-~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           87 F-QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             T-TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             c-CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            4 222 2578 88899886543110       00012233    66899999999877653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.20  E-value=5.5e-11  Score=92.03  Aligned_cols=77  Identities=17%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++..  .+++++|+|+.+++.+++++..      .++++++++|+.+........| .|+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~~-~vv   99 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFPKNQSY-KIF   99 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCCSSCCC-EEE
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCcccCCCe-EEE
Confidence            456799999999999999998775  6999999999999999998753      2589999999876421112345 688


Q ss_pred             ECCCCC
Q psy4592         136 TDSSDP  141 (197)
Q Consensus       136 ~~~~~~  141 (197)
                      +|+|.+
T Consensus       100 ~nlPy~  105 (244)
T 1qam_A          100 GNIPYN  105 (244)
T ss_dssp             EECCGG
T ss_pred             EeCCcc
Confidence            888754

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.19  E-value=8.7e-11  Score=88.10  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=75.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC-CCCeEEEEcchHHH-----------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-DPRLTVHVGDGFRF-----------  123 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~d~~~~-----------  123 (197)
                      .++++|||+||  |+.+..+++.. ..++++||.+++..+.|++++...  ++. ..+++++.+|+.+.           
T Consensus        29 ~~a~~VLEiGt--GySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~--g~~~~~~I~~~~gda~~~~~wg~p~~~~~  103 (202)
T 3cvo_A           29 EEAEVILEYGS--GGSTVVAAELP-GKHVTSVESDRAWARMMKAWLAAN--PPAEGTEVNIVWTDIGPTGDWGHPVSDAK  103 (202)
T ss_dssp             HHCSEEEEESC--SHHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHS--CCCTTCEEEEEECCCSSBCGGGCBSSSTT
T ss_pred             hCCCEEEEECc--hHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHc--CCCCCCceEEEEeCchhhhcccccccchh
Confidence            35679999998  46777777743 579999999999999999988752  220 35899999996432           


Q ss_pred             -------Hh----h-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         124 -------MS----E-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       124 -------~~----~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                             ..    . ..++||+|++|...     .    ..++..+.+.|+|||++++
T Consensus       104 ~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~----~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          104 WRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----R----VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             GGGTTHHHHGGGGCTTCCCCSEEEECSSS-----H----HHHHHHHHHHCSSCEEEEE
T ss_pred             hhhHHHHhhhhhccccCCCCCEEEEeCCC-----c----hhHHHHHHHhcCCCeEEEE
Confidence                   11    1 13689999999831     1    3577778899999999987

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.19  E-value=1.1e-11  Score=104.00  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-------------CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-------------SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-------------~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ..+.+|||.|||+|+++..+.+..             ...+++|+|+++.+++.|+.++...  +....+.++.++|+..
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~--g~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH--GIGTDRSPIVCEDSLE  247 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT--TCCSSCCSEEECCTTT
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh--CCCcCCCCEeeCCCCC
Confidence            345699999999999988877532             2368999999999999999876431  1121257889999754


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcc-------c------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAES-------L------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~-------l------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ..  ..++||+|++|||........       +      ....|++.+.+.|||||++++.+..
T Consensus       248 ~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          248 KE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             SC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             Cc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            22  234899999999875431110       0      0136899999999999999887643

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.18  E-value=1.8e-10  Score=93.70  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC--CCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV--GLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ..++.+|||+|+|.|+=+.+++.......++++|+++.-++..++++...+.  .....++.+...|+..+.....++||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            3566899999999999999988776656899999999988888877543210  01235799999999887655567999


Q ss_pred             EEEECCCCCCC------CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHH
Q psy4592         133 VIITDSSDPVG------PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHC  188 (197)
Q Consensus       133 ~I~~~~~~~~~------~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~  188 (197)
                      .|++|+|....      .++..              ...++++.+.+.|||||+++..+++...  +....+.+++..
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence            99999986431      11111              1246888999999999999999988544  445555555443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.17  E-value=2.5e-11  Score=98.82  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||||||+|.++..+++..+..+++++|+ +.+++.+++          .++++++.+|+.+  +.  .+||+|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~~--~~~D~v~~  257 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----------NENLNFVGGDMFK--SI--PSADAVLL  257 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----------CSSEEEEECCTTT--CC--CCCSEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----------CCCcEEEeCccCC--CC--CCceEEEE
Confidence            457999999999999999998777779999999 788765543          1359999999865  22  35999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCC---CcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRP---GGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~Lkp---gG~l~~~~  171 (197)
                      ....|..++..  ...++++++++|+|   ||++++..
T Consensus       258 ~~vlh~~~d~~--~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          258 KWVLHDWNDEQ--SLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             ESCGGGSCHHH--HHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             cccccCCCHHH--HHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            88877665431  14899999999999   99888853

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.16  E-value=2.3e-11  Score=93.17  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=77.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||||||+|-++..+.   +..+++++|||+.+++.+++++..     .+.+..+..+|.....  ..++||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~-----~g~~~~~~v~D~~~~~--~~~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFARE-----KDWDFTFALQDVLCAP--PAEAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHH-----TTCEEEEEECCTTTSC--CCCBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEeecccCC--CCCCcchHH
Confidence            467899999999999988776   558999999999999999998754     3468899999975432  356999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.-..|...+..  ....+ .+.+.|+++|+++-.
T Consensus       174 llk~lh~LE~q~--~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          174 IFKLLPLLEREQ--AGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EESCHHHHHHHS--TTHHH-HHHHHCBCSEEEEEE
T ss_pred             HHHHHHHhhhhc--hhhHH-HHHHHhcCCCEEEEc
Confidence            886554432111  12344 788899999887753

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=99.15  E-value=7e-11  Score=91.85  Aligned_cols=146  Identities=11%  Similarity=0.036  Sum_probs=91.7

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      ..+-..++... ..  .++..+|||||||+|+++..+++..+...++++++.-++.     ..+...... ..++..+.+
T Consensus        59 aA~KL~ei~ek-~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-----~~pi~~~~~-g~~ii~~~~  129 (277)
T 3evf_A           59 GTAKLRWFHER-GY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-----EKPMNVQSL-GWNIITFKD  129 (277)
T ss_dssp             HHHHHHHHHHT-TS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-----CCCCCCCBT-TGGGEEEEC
T ss_pred             HHHHHHHHHHh-CC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-----ccccccCcC-CCCeEEEec
Confidence            33444555555 22  2455699999999999999888765656888888875431     001100000 114444555


Q ss_pred             chHHHHhhcCCceeEEEECCCCCCCCCcccc---cHHHHHHHHhhcCCC-cEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         119 DGFRFMSEHQQEFDVIITDSSDPVGPAESLF---QASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       119 d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~---~~~~~~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++. ......++||+|++|...+ .......   +-.+++.+.+.|+|| |.|++-+..|.  .+....+++.+++.|..
T Consensus       130 ~~d-v~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py--g~~~~~l~~~lk~~F~~  205 (277)
T 3evf_A          130 KTD-IHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY--MPDVLEKLELLQRRFGG  205 (277)
T ss_dssp             SCC-TTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--SHHHHHHHHHHHHHHCC
T ss_pred             cce-ehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC--CccHHHHHHHHHHhcCC
Confidence            532 1223457899999998655 3222111   123568889999999 99999654432  46778888999999988


Q ss_pred             ccC
Q psy4592         195 LHC  197 (197)
Q Consensus       195 v~~  197 (197)
                      |++
T Consensus       206 V~~  208 (277)
T 3evf_A          206 TVI  208 (277)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.15  E-value=1.3e-10  Score=92.60  Aligned_cols=89  Identities=21%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      +.+++..+..   .++.+|||+|||+|+.+..+++..+..+++++|+|+.+++.|++++...     ..+++++++|+.+
T Consensus        15 l~e~l~~L~~---~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-----g~~v~~v~~d~~~   86 (301)
T 1m6y_A           15 VREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYRE   86 (301)
T ss_dssp             HHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGG
T ss_pred             HHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEECCHHH
Confidence            4555555532   4567999999999999999998765579999999999999999988652     2589999999877


Q ss_pred             HHh---hc-CCceeEEEECCC
Q psy4592         123 FMS---EH-QQEFDVIITDSS  139 (197)
Q Consensus       123 ~~~---~~-~~~~D~I~~~~~  139 (197)
                      ...   .. ..+||.|++|++
T Consensus        87 l~~~l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           87 ADFLLKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHhcCCCCCCEEEEcCc
Confidence            532   11 158999999985

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.15  E-value=4.4e-11  Score=102.45  Aligned_cols=117  Identities=12%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC----C--------------CccEEEEEcCHHHHHHHHhhcCCCCCCCCC---CCeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP----S--------------VESAYLVEIDNRVIEVSKKYLPGMAVGLSD---PRLT  114 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~----~--------------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~---~~~~  114 (197)
                      ..+.+|||.|||+|++...+.+..    +              ...++|+|+++.++++|+.++...  +...   .+.+
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~--gi~~~~~~~~~  245 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH--DIEGNLDHGGA  245 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT--TCCCBGGGTBS
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh--CCCccccccCC
Confidence            345699999999999887766431    1              247999999999999999875431  1111   1278


Q ss_pred             EEEcchHHHHhhcCCceeEEEECCCCCCCCCc----------ccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         115 VHVGDGFRFMSEHQQEFDVIITDSSDPVGPAE----------SLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       115 ~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~----------~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      +.++|..........+||+|++|||.......          .-....|++.+.+.|+|||++.+.+...
T Consensus       246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            89999865443335789999999987543211          0011368999999999999988876443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.13  E-value=3.7e-11  Score=99.23  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      .+.+|||+|||+|..+..+++..  .+|++||+|+.+++.|++++.....++  .+++++++|+.++++. ..++||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECcHHHhhhhccCCCceEEE
Confidence            36799999999999999888764  699999999999999999976421011  4799999999886554 235799999


Q ss_pred             ECCCCCC
Q psy4592         136 TDSSDPV  142 (197)
Q Consensus       136 ~~~~~~~  142 (197)
                      +||+...
T Consensus       169 lDPPrr~  175 (410)
T 3ll7_A          169 VDPARRS  175 (410)
T ss_dssp             ECCEEC-
T ss_pred             ECCCCcC
Confidence            9998644

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.12  E-value=4.4e-10  Score=87.20  Aligned_cols=86  Identities=27%  Similarity=0.436  Sum_probs=63.8

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      ..++..+.   ...+.+|||||||+|.++..+++.. ..+++++|+|+.+++.++++ .       ..+++++++|+.+.
T Consensus        21 ~~iv~~~~---~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           21 KKIAEELN---IEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHTT---CCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTC
T ss_pred             HHHHHhcC---CCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhC
Confidence            44444443   2456799999999999999998873 47999999999999999887 3       24799999998764


Q ss_pred             Hhhc-CCceeEEEECCCCCC
Q psy4592         124 MSEH-QQEFDVIITDSSDPV  142 (197)
Q Consensus       124 ~~~~-~~~~D~I~~~~~~~~  142 (197)
                      .... .+.+ .|++|+|.+.
T Consensus        89 ~~~~~~~~~-~vv~NlPy~i  107 (249)
T 3ftd_A           89 PFCSLGKEL-KVVGNLPYNV  107 (249)
T ss_dssp             CGGGSCSSE-EEEEECCTTT
T ss_pred             ChhHccCCc-EEEEECchhc
Confidence            2221 1234 8888987644

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.12  E-value=3.8e-11  Score=93.67  Aligned_cols=81  Identities=15%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCH-------HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN-------RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQ  128 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~  128 (197)
                      .+.+|||+|||+|..+..+++..  .+|+++|+++       ++++.|+++....  +. ..+++++++|+.++++. ..
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~--~~-~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPETQ--DT-AARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHHHH--HH-HTTEEEEESCHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHHhh--CC-ccCeEEEECCHHHHHHhhhc
Confidence            45799999999999999988863  6999999999       9999998875431  11 13599999999987653 22


Q ss_pred             --CceeEEEECCCCCC
Q psy4592         129 --QEFDVIITDSSDPV  142 (197)
Q Consensus       129 --~~~D~I~~~~~~~~  142 (197)
                        ++||+|++|++.+.
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence              68999999998755

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.10  E-value=3.5e-10  Score=99.53  Aligned_cols=134  Identities=12%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCC---CccEEEEEcCHHHHHHH--HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPS---VESAYLVEIDNRVIEVS--KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~v~~ve~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      .+.+|||.|||+|.+...+++..+   ..+++|+|+++.+++.|  +.++....-........+...|..........+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            457999999999999998887543   36899999999999999  5554321000011223566666544211234689


Q ss_pred             eEEEECCCCCCC-CCcc------------------------cccHHHHHHHHhhcCCCcEEEEEcCCCCcC--hhHHHHH
Q psy4592         132 DVIITDSSDPVG-PAES------------------------LFQASYFELMSRALRPGGIVCSQAGTLWYS--LDCVGNT  184 (197)
Q Consensus       132 D~I~~~~~~~~~-~~~~------------------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~  184 (197)
                      |+|++|||.... ....                        -....|++.+.+.|+|||++.+.+...+..  ....+.+
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkL  480 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAF  480 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHH
Confidence            999999997321 1000                        001458899999999999999887665552  2234445


Q ss_pred             HHHHHh
Q psy4592         185 LQHCAS  190 (197)
Q Consensus       185 ~~~~~~  190 (197)
                      .+.+.+
T Consensus       481 Rk~LLe  486 (878)
T 3s1s_A          481 REFLVG  486 (878)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            554443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.08  E-value=2.5e-11  Score=103.95  Aligned_cols=131  Identities=16%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC---------------CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS---------------VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      +.+.+|||.+||+|++...+.+...               ...++|+|+++.++++|+.++...  +.. .++.+.++|.
T Consensus       243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~--gi~-~~i~i~~gDt  319 (544)
T 3khk_A          243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR--GID-FNFGKKNADS  319 (544)
T ss_dssp             CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT--TCC-CBCCSSSCCT
T ss_pred             cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh--CCC-cccceeccch
Confidence            3445999999999998877654211               358999999999999999876431  112 2344477886


Q ss_pred             HHHHhhcCCceeEEEECCCCCCC--CCcc------------------cc-----cHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592         121 FRFMSEHQQEFDVIITDSSDPVG--PAES------------------LF-----QASYFELMSRALRPGGIVCSQAGTLW  175 (197)
Q Consensus       121 ~~~~~~~~~~~D~I~~~~~~~~~--~~~~------------------l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~  175 (197)
                      .........+||+|++|||....  ....                  +.     .-.|++.+.+.|+|||++.+.+...+
T Consensus       320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~  399 (544)
T 3khk_A          320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS  399 (544)
T ss_dssp             TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred             hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence            43222224689999999997531  0000                  10     12589999999999999888765433


Q ss_pred             c-Ch-hHHHHHHHHHH
Q psy4592         176 Y-SL-DCVGNTLQHCA  189 (197)
Q Consensus       176 ~-~~-~~~~~~~~~~~  189 (197)
                      . .. ...+.+.+.+.
T Consensus       400 L~~~~~~~~~iRk~Ll  415 (544)
T 3khk_A          400 MSSNTNNEGEIRKTLV  415 (544)
T ss_dssp             HHCCGGGHHHHHHHHH
T ss_pred             hhcCcchHHHHHHHHH
Confidence            3 21 23344444443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.06  E-value=9.1e-11  Score=91.41  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=63.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCCC---CCeEEEEcchHHHHhhcCCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLSD---PRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~~---~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+|||+|||+|..+..+++..  .+|++||+++.+.+++++++....  ...+.   .+++++++|+.++++...++||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            799999999999999988773  589999999988766665532110  00011   47999999999887654457999


Q ss_pred             EEECCCCCCC
Q psy4592         134 IITDSSDPVG  143 (197)
Q Consensus       134 I~~~~~~~~~  143 (197)
                      |++||+.+..
T Consensus       168 V~lDP~y~~~  177 (258)
T 2oyr_A          168 VYLDPMFPHK  177 (258)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEcCCCCCc
Confidence            9999987654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.05  E-value=3.4e-10  Score=96.81  Aligned_cols=131  Identities=10%  Similarity=0.088  Sum_probs=88.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC---CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--HhhcCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH---PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  131 (197)
                      .+.+|||.+||+|++...+.+.   .+...++|+|+++.++.+|+.++..  .+...++..+.++|....  ......+|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~gi~~~~~~I~~gDtL~~d~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL--HGVPIENQFLHNADTLDEDWPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH--TTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH--cCCCcCccceEecceecccccccccccc
Confidence            4569999999999988776654   2346899999999999999987543  122224688999997542  11235689


Q ss_pred             eEEEECCCCCCC--CCcc------------cc-----cHHHHHHHHhhcC-CCcEEEEEcCCCCc-ChhHHHHHHHHHH
Q psy4592         132 DVIITDSSDPVG--PAES------------LF-----QASYFELMSRALR-PGGIVCSQAGTLWY-SLDCVGNTLQHCA  189 (197)
Q Consensus       132 D~I~~~~~~~~~--~~~~------------l~-----~~~~~~~~~~~Lk-pgG~l~~~~~~~~~-~~~~~~~~~~~~~  189 (197)
                      |+|++|||....  ....            +.     .-.|++.+.+.|+ |||++.+.+...+. .......+.+.+.
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Ll  377 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALL  377 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHH
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHH
Confidence            999999996431  1100            00     1248999999999 99999887755443 2222344444443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.03  E-value=8.5e-10  Score=86.94  Aligned_cols=101  Identities=22%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHH
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVS   97 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a   97 (197)
                      ++.||.....|         ......++..+..   .++.+|||||||+|.++..+++..+.  .+++++|+|+++++.+
T Consensus        17 ~k~~GQ~fL~d---------~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a   84 (279)
T 3uzu_A           17 RKRFGQNFLVD---------HGVIDAIVAAIRP---ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRL   84 (279)
T ss_dssp             -CCCSCCEECC---------HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHH
T ss_pred             cccCCccccCC---------HHHHHHHHHhcCC---CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHH
Confidence            34567766555         2333445554432   45679999999999999999876431  3499999999999999


Q ss_pred             HhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCC----ceeEEEECCCC
Q psy4592          98 KKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQ----EFDVIITDSSD  140 (197)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~----~~D~I~~~~~~  140 (197)
                      +++. .       ++++++++|+.+.... ...    ..+.|+.|+|.
T Consensus        85 ~~~~-~-------~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY  124 (279)
T 3uzu_A           85 EQRF-G-------ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPY  124 (279)
T ss_dssp             HHHH-G-------GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCH
T ss_pred             HHhc-C-------CCcEEEECChhcCChhHhcccccCCceEEEEccCc
Confidence            9873 1       4799999999874221 111    34578888874

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=99.02  E-value=1.6e-10  Score=90.04  Aligned_cols=144  Identities=13%  Similarity=0.028  Sum_probs=91.8

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      ..+-..++.... .+  .+..+|||||||.|+++..+++..+...++++|+...+...+... .    . ...++.....
T Consensus        75 AAfKL~ei~eK~-~L--k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~----~-~g~~ii~~~~  145 (282)
T 3gcz_A           75 GSAKLRWMEERG-YV--KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T----T-LGWNLIRFKD  145 (282)
T ss_dssp             HHHHHHHHHHTT-SC--CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C----B-TTGGGEEEEC
T ss_pred             HHHHHHHHHHhc-CC--CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c----c-CCCceEEeeC
Confidence            344445666554 22  455699999999999999888766667899999976532111110 0    0 1123333332


Q ss_pred             --chHHHHhhcCCceeEEEECCCCCCCCCccc---ccHHHHHHHHhhcCCC--cEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         119 --DGFRFMSEHQQEFDVIITDSSDPVGPAESL---FQASYFELMSRALRPG--GIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       119 --d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l---~~~~~~~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                        |..   .....++|+|++|.... ......   -+-.+++-+.+.|+||  |.|++-+..+.  .+....+++.+++.
T Consensus       146 ~~dv~---~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py--g~~~~~l~~~lk~~  219 (282)
T 3gcz_A          146 KTDVF---NMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY--TPLIMEELSRLQLK  219 (282)
T ss_dssp             SCCGG---GSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC--SHHHHHHHHHHHHH
T ss_pred             Ccchh---hcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC--CccHHHHHHHHHHh
Confidence              432   22457899999998755 322211   1123577778999999  99999653321  46778888999999


Q ss_pred             CCcccC
Q psy4592         192 FPRLHC  197 (197)
Q Consensus       192 f~~v~~  197 (197)
                      |..|++
T Consensus       220 F~~V~~  225 (282)
T 3gcz_A          220 HGGGLV  225 (282)
T ss_dssp             HCCEEE
T ss_pred             cCCEEE
Confidence            988763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.99  E-value=5.6e-10  Score=98.31  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCC------------------------------------------CCccEEEEEcCHH
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHP------------------------------------------SVESAYLVEIDNR   92 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~------------------------------------------~~~~v~~ve~~~~   92 (197)
                      ...+..+||.+||+|.++.+++...                                          +...++++|+|+.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            3456799999999999988766421                                          1147999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHHHHHH---HHhhcCCCcEEE
Q psy4592          93 VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFEL---MSRALRPGGIVC  168 (197)
Q Consensus        93 ~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~---~~~~LkpgG~l~  168 (197)
                      +++.|++|....  ++ ...+++.++|+.+..... .++||+|++|||........-....+++.   +.+.+.|||.++
T Consensus       268 av~~A~~N~~~a--gv-~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~  344 (703)
T 3v97_A          268 VIQRARTNARLA--GI-GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS  344 (703)
T ss_dssp             HHHHHHHHHHHT--TC-GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHHHc--CC-CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence            999999997642  22 235899999987742221 23899999999964421111001334444   445556899988


Q ss_pred             EEcCC
Q psy4592         169 SQAGT  173 (197)
Q Consensus       169 ~~~~~  173 (197)
                      +.+..
T Consensus       345 ilt~~  349 (703)
T 3v97_A          345 LFSAS  349 (703)
T ss_dssp             EEESC
T ss_pred             EEeCC
Confidence            86544

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.95  E-value=2.2e-09  Score=83.34  Aligned_cols=89  Identities=11%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ...++..+..   .++.+|||||||+|.++. +.+ .+..+++++|+|+.+++.+++++..      .++++++++|+.+
T Consensus        10 ~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~   78 (252)
T 1qyr_A           10 IDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGG
T ss_pred             HHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhh
Confidence            3455544432   455799999999999999 654 3222399999999999999988753      2589999999876


Q ss_pred             H-Hhhc---CCceeEEEECCCCCC
Q psy4592         123 F-MSEH---QQEFDVIITDSSDPV  142 (197)
Q Consensus       123 ~-~~~~---~~~~D~I~~~~~~~~  142 (197)
                      . ++..   .+..|.|++|+|...
T Consensus        79 ~~~~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           79 FNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             CCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             CCHHHhhcccCCceEEEECCCCCc
Confidence            3 2211   124589999998544

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.93  E-value=2.5e-09  Score=83.81  Aligned_cols=145  Identities=14%  Similarity=0.022  Sum_probs=91.4

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      ..+-..++... .++  ++.++||||||++|+|+..+++..+...++++|+...+..     .+.....+..+.+.+..+
T Consensus        66 aa~KL~ei~ek-~l~--~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~-----~P~~~~~~~~~iv~~~~~  137 (300)
T 3eld_A           66 GAAKIRWLHER-GYL--RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE-----KPIHMQTLGWNIVKFKDK  137 (300)
T ss_dssp             THHHHHHHHHH-TSC--CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC-----CCCCCCBTTGGGEEEECS
T ss_pred             HHHHHHHHHHh-CCC--CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc-----ccccccccCCceEEeecC
Confidence            34445566655 333  5678999999999999999997666678899998654311     010000001112333322


Q ss_pred             -chHHHHhhcCCceeEEEECCCCCCCCCccc---ccHHHHHHHHhhcCCC-cEEEEEcCCCCcChhHHHHHHHHHHhhCC
Q psy4592         119 -DGFRFMSEHQQEFDVIITDSSDPVGPAESL---FQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFP  193 (197)
Q Consensus       119 -d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l---~~~~~~~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~f~  193 (197)
                       |+.   .....++|+|++|..-. ......   -+..+++-+.+.|+|| |.|++-+..+.  .+....++..+++.|.
T Consensus       138 ~di~---~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y--G~~~~~ll~~lk~~F~  211 (300)
T 3eld_A          138 SNVF---TMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY--HPDVIEKLERLQLRFG  211 (300)
T ss_dssp             CCTT---TSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT--SHHHHHHHHHHHHHHC
T ss_pred             ceee---ecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc--CccHHHHHHHHHHhCC
Confidence             322   22357899999998655 322211   1124577778999999 99999653322  4677888999999998


Q ss_pred             cccC
Q psy4592         194 RLHC  197 (197)
Q Consensus       194 ~v~~  197 (197)
                      .|++
T Consensus       212 ~V~~  215 (300)
T 3eld_A          212 GGIV  215 (300)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            8763

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.92  E-value=9.9e-09  Score=80.30  Aligned_cols=121  Identities=15%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~  133 (197)
                      ++..+||+-+|||.++.++++. . .+++.||.+++.++..++|+..      ..+++++..|+...+..   +..+||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~-~-d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRS-Q-DRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCT-T-SEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCC-C-CeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence            4568999999999999998884 3 7999999999999999999864      35899999999887764   2347999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      |++|||.......    ++.++.+.+  .+.|+|+++++-  |.......+.+.+.+++.
T Consensus       163 VfiDPPYe~k~~~----~~vl~~L~~~~~r~~~Gi~v~WY--Pi~~~~~~~~~~~~l~~~  216 (283)
T 2oo3_A          163 IFIDPSYERKEEY----KEIPYAIKNAYSKFSTGLYCVWY--PVVNKAWTEQFLRKMREI  216 (283)
T ss_dssp             EEECCCCCSTTHH----HHHHHHHHHHHHHCTTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCcHH----HHHHHHHHHhCccCCCeEEEEEE--eccchHHHHHHHHHHHhc
Confidence            9999986532221    444544443  568999999864  555556667777777543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.88  E-value=9.6e-09  Score=80.87  Aligned_cols=107  Identities=12%  Similarity=0.045  Sum_probs=79.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-----CCccEEEEEcCHH--------------------------HHHHHHhhcCCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-----SVESAYLVEIDNR--------------------------VIEVSKKYLPGM  104 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~ve~~~~--------------------------~~~~a~~~~~~~  104 (197)
                      ..+.+|||+|+..|..+..++...     +..+++++|..+.                          .++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            457799999999999888776431     2478999996421                          356677777642


Q ss_pred             CCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         105 AVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       105 ~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                        ++..++++++.||+.+.++.. .++||+|+.|.-.      ...+..+++.+...|+|||++++-
T Consensus       185 --gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~------y~~~~~~Le~~~p~L~pGGiIv~D  243 (282)
T 2wk1_A          185 --DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL------YESTWDTLTNLYPKVSVGGYVIVD  243 (282)
T ss_dssp             --TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS------HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             --CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc------cccHHHHHHHHHhhcCCCEEEEEc
Confidence              222368999999999887764 4689999999831      111257899999999999999983

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.76  E-value=1.2e-08  Score=88.66  Aligned_cols=108  Identities=21%  Similarity=0.278  Sum_probs=75.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcC----C---------CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH----P---------SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM  124 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~----~---------~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  124 (197)
                      .+.|||+|||+|-+....++.    .         ...+|++||.++..+..++....   ++.. ++++++.+|++++-
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~---Ng~~-d~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV---RTWK-RRVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH---HTTT-TCSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh---cCCC-CeEEEEeCchhhcc
Confidence            458999999999986432211    1         23599999999976655544322   1222 57999999999864


Q ss_pred             hh----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         125 SE----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       125 ~~----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..    ..++.|+||+........+. + .++.+..+.+.|||||.++=..
T Consensus       486 lp~~~~~~ekVDIIVSElmGsfl~nE-L-~pe~Ld~v~r~Lkp~Gi~iP~~  534 (745)
T 3ua3_A          486 GIAKDRGFEQPDIIVSELLGSFGDNE-L-SPECLDGVTGFLKPTTISIPQK  534 (745)
T ss_dssp             HHHHHTTCCCCSEEEECCCBTTBGGG-S-HHHHHHTTGGGSCTTCEEESCE
T ss_pred             cccccCCCCcccEEEEeccccccchh-c-cHHHHHHHHHhCCCCcEEECCc
Confidence            31    15799999999875443222 2 2678888899999999887543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.75  E-value=5.9e-08  Score=74.55  Aligned_cols=140  Identities=16%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCe---EEE
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL---TVH  116 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  116 (197)
                      .+-..++....   ..+++.+|+|+||+.|+|+..+++..+...+.+..+.... .    -.+.  .. ..+.+   ++.
T Consensus        59 ayKL~EIdeK~---likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~--~~-~~~Gv~~i~~~  127 (269)
T 2px2_A           59 TAKLRWLVERR---FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPM--LM-QSYGWNIVTMK  127 (269)
T ss_dssp             HHHHHHHHHTT---SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCC--CC-CSTTGGGEEEE
T ss_pred             HHHHHHHHHcC---CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCC--cc-cCCCceEEEee
Confidence            34445666553   2366789999999999999998876333344455543331 0    0011  00 00233   555


Q ss_pred             Ec-chHHHHhhcCCceeEEEECCCCCCCCCcccccH---HHHHHHHhhcCCCc-EEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         117 VG-DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQA---SYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       117 ~~-d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~---~~~~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      ++ |+.+   ....++|+|++|+.-. .........   ..++-+.+.|+||| .|++-+..  ...+.+.+.++.+++.
T Consensus       128 ~G~Df~~---~~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq--g~~~~~~~~l~~lk~~  201 (269)
T 2px2_A          128 SGVDVFY---KPSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC--PYMPKVIEKLESLQRR  201 (269)
T ss_dssp             CSCCGGG---SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC--TTSHHHHHHHHHHHHH
T ss_pred             ccCCccC---CCCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC--CCchHHHHHHHHHHHH
Confidence            57 9765   2245899999998644 333221111   24666779999999 88887655  2236677777888888


Q ss_pred             CCccc
Q psy4592         192 FPRLH  196 (197)
Q Consensus       192 f~~v~  196 (197)
                      |..|+
T Consensus       202 F~~vk  206 (269)
T 2px2_A          202 FGGGL  206 (269)
T ss_dssp             HCCEE
T ss_pred             cCCEE
Confidence            87765

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.74  E-value=1.5e-07  Score=74.55  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=74.8

Q ss_pred             CCeEEEEeCCchHhHHHHh----cCCCCc--cEEEEEcCH------------HHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          58 PKKVLIVGGGDGGVAREVL----KHPSVE--SAYLVEIDN------------RVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~----~~~~~~--~v~~ve~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      .-+|||+|.|+|.......    +..+..  +++.+|..+            +..+......+....  ..-.+++..+|
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~--~~v~L~l~~GD  174 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEG--ERLSLKVLLGD  174 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEEC--SSEEEEEEESC
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccC--CcEEEEEEech
Confidence            3589999999998654322    223333  456666422            112222222222100  12246778999


Q ss_pred             hHHHHhhc-CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         120 GFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       120 ~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.+.++.- ..++|+|+.|++.|.. ++.++++++++.++++++|||+++..+..
T Consensus       175 a~~~l~~l~~~~~Da~flDgFsP~k-NPeLWs~e~f~~l~~~~~pgg~laTYtaa  228 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDAFSPYK-NPELWTLDFLSLIKERIDEKGYWVSYSSS  228 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECCSCTTT-SGGGGSHHHHHHHHTTEEEEEEEEESCCC
T ss_pred             HHHHHhhhcccceeEEEeCCCCccc-CcccCCHHHHHHHHHHhCCCcEEEEEeCc
Confidence            99988763 3489999999987655 56789999999999999999999986544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.70  E-value=4e-09  Score=91.30  Aligned_cols=104  Identities=15%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             CeEEEEeCCchHhHHHHhc---C-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          59 KKVLIVGGGDGGVAREVLK---H-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~---~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..|||+|||+|-+....++   . ....+|++||.+|. ...+++....  ++. .++++++++|++++ . .++++|+|
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~--N~~-~dkVtVI~gd~eev-~-LPEKVDII  432 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQF--EEW-GSQVTVVSSDMREW-V-APEKADII  432 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHH--HTT-GGGEEEEESCTTTC-C-CSSCEEEE
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHh--ccC-CCeEEEEeCcceec-c-CCcccCEE
Confidence            5799999999988443332   2 22247899999984 4556554332  122 35899999998874 2 24799999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+.+.....-....  .+.+....+.|||||.++=.
T Consensus       433 VSEwMG~fLl~E~m--levL~Ardr~LKPgGimiPs  466 (637)
T 4gqb_A          433 VSELLGSFADNELS--PECLDGAQHFLKDDGVSIPG  466 (637)
T ss_dssp             ECCCCBTTBGGGCH--HHHHHHHGGGEEEEEEEESC
T ss_pred             EEEcCcccccccCC--HHHHHHHHHhcCCCcEEccc
Confidence            99887655444332  46778888999999998743

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.67  E-value=2.8e-07  Score=69.92  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=92.8

Q ss_pred             chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      ..+-..++.... .+  +...+|+||||++|+++..++...+...|.++|+-+.-.+     .+.+..-+.-+.+++..+
T Consensus        63 a~~KL~ei~ek~-~l--~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-----~P~~~~s~gwn~v~fk~g  134 (267)
T 3p8z_A           63 GSAKLQWFVERN-MV--IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-----EPVPMSTYGWNIVKLMSG  134 (267)
T ss_dssp             HHHHHHHHHHTT-SS--CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCCCCTTTTSEEEECS
T ss_pred             HHHHHHHHHHhc-CC--CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-----CcchhhhcCcCceEEEec
Confidence            344445666555 22  4566999999999999998887767679999998654321     111111112357999999


Q ss_pred             -chHHHHhhcCCceeEEEECCCCCCCCCccccc---HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         119 -DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQ---ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       119 -d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~---~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                       |... +  ...++|.|+||+.. ..+++....   -..++-+.+.|++ |-|++-+.+|..  +...+.++.++..|..
T Consensus       135 vDv~~-~--~~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~--p~v~e~l~~lq~~fgg  207 (267)
T 3p8z_A          135 KDVFY-L--PPEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM--PTVIEHLERLQRKHGG  207 (267)
T ss_dssp             CCGGG-C--CCCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS--HHHHHHHHHHHHHHCC
T ss_pred             cceee-c--CCccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC--hhHHHHHHHHHHHhCC
Confidence             8633 2  23679999999875 433332211   2356666788998 888887766544  3445667777777765


Q ss_pred             cc
Q psy4592         195 LH  196 (197)
Q Consensus       195 v~  196 (197)
                      +.
T Consensus       208 ~l  209 (267)
T 3p8z_A          208 ML  209 (267)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.61  E-value=1.9e-07  Score=72.99  Aligned_cols=143  Identities=14%  Similarity=0.099  Sum_probs=91.6

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-  118 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  118 (197)
                      .+-..++....   .......||||||++|+++..++...+...|.++|+-..-.+     .|.+...+.-..+.++.+ 
T Consensus        80 ~~KL~ei~~~~---~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-----~P~~~~ql~w~lV~~~~~~  151 (321)
T 3lkz_A           80 TAKLRWLVERR---FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-----EPQLVQSYGWNIVTMKSGV  151 (321)
T ss_dssp             HHHHHHHHHTT---SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-----CCCCCCBTTGGGEEEECSC
T ss_pred             HHHHHHHHHhc---CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-----CcchhhhcCCcceEEEecc
Confidence            34445555542   224556999999999999998887767678999998654211     011111122235778877 


Q ss_pred             chHHHHhhcCCceeEEEECCCCCCCCCccccc---HHHHHHHHhhcCCC-cEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         119 DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQ---ASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       119 d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~---~~~~~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      |++. ++  ..++|.|++|.. ...+++....   -..|+-+.+.|++| |-|++-+.+|..  +...+.++.++..|+.
T Consensus       152 Dv~~-l~--~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~--~~v~e~l~~lq~~fgg  225 (321)
T 3lkz_A          152 DVFY-RP--SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM--PKVIEKMELLQRRYGG  225 (321)
T ss_dssp             CTTS-SC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS--HHHHHHHHHHHHHHCC
T ss_pred             CHhh-CC--CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC--hHHHHHHHHHHHHhCC
Confidence            7643 22  267999999998 3333332211   22566667889999 899998766544  4555777788777766


Q ss_pred             cc
Q psy4592         195 LH  196 (197)
Q Consensus       195 v~  196 (197)
                      +.
T Consensus       226 ~l  227 (321)
T 3lkz_A          226 GL  227 (321)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.55  E-value=5e-07  Score=70.65  Aligned_cols=83  Identities=22%  Similarity=0.223  Sum_probs=65.5

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .+++..+..   .++..++|.+||.|+.+.++++.  ..+++++|.||.+++.|++ +.      . +++++++++..++
T Consensus        12 ~e~le~L~~---~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~------~-~rv~lv~~~f~~l   78 (285)
T 1wg8_A           12 QEALDLLAV---RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH------L-PGLTVVQGNFRHL   78 (285)
T ss_dssp             HHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC------C-TTEEEEESCGGGH
T ss_pred             HHHHHhhCC---CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc------c-CCEEEEECCcchH
Confidence            455555532   45579999999999999999987  3799999999999999998 64      2 5899999998875


Q ss_pred             H---hhc-CCceeEEEECCC
Q psy4592         124 M---SEH-QQEFDVIITDSS  139 (197)
Q Consensus       124 ~---~~~-~~~~D~I~~~~~  139 (197)
                      -   ... .+++|.|++|..
T Consensus        79 ~~~L~~~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           79 KRHLAALGVERVDGILADLG   98 (285)
T ss_dssp             HHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHcCCCCcCEEEeCCc
Confidence            3   221 357999999764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.44  E-value=6e-07  Score=70.19  Aligned_cols=131  Identities=18%  Similarity=0.272  Sum_probs=80.5

Q ss_pred             hhHHHHHHhhcc--cCCCCCCeEEEEeC------CchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCC
Q psy4592          41 FSYSEMIAFLPL--CSHPNPKKVLIVGG------GDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDP  111 (197)
Q Consensus        41 ~~~~~~~~~~~~--~~~~~~~~vLdiG~------G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~  111 (197)
                      ..|+++..++.-  +-.+.+.+|||+|+      ..|++.  +.+..+. +.++++|+.|-.               ...
T Consensus        91 ~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~---------------sda  153 (344)
T 3r24_A           91 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV---------------SDA  153 (344)
T ss_dssp             HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB---------------CSS
T ss_pred             HHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc---------------cCC
Confidence            457888777732  33467789999996      677743  2223443 599999997733               112


Q ss_pred             CeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC---cc----cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHH
Q psy4592         112 RLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA---ES----LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT  184 (197)
Q Consensus       112 ~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~---~~----l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  184 (197)
                      + .++++|..+.  ....+||+|++|++-.....   .+    -+.+..++-+.+.|+|||.|++-+...... +.    
T Consensus       154 ~-~~IqGD~~~~--~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~-~~----  225 (344)
T 3r24_A          154 D-STLIGDCATV--HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN-AD----  225 (344)
T ss_dssp             S-EEEESCGGGE--EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC-HH----
T ss_pred             C-eEEEcccccc--ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH-HH----
Confidence            3 4488996542  23578999999986433211   11    122566777889999999999976332221 32    


Q ss_pred             HHHHHhhCCccc
Q psy4592         185 LQHCASVFPRLH  196 (197)
Q Consensus       185 ~~~~~~~f~~v~  196 (197)
                      +..+++.|..|+
T Consensus       226 L~~lrk~F~~VK  237 (344)
T 3r24_A          226 LYKLMGHFSWWT  237 (344)
T ss_dssp             HHHHHTTEEEEE
T ss_pred             HHHHHhhCCeEE
Confidence            333445665554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.37  E-value=6.6e-07  Score=73.07  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHh--------cC-------CCCccEEEEEcCHHHHHHHHhhcCCCCCCC--------CCCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVL--------KH-------PSVESAYLVEIDNRVIEVSKKYLPGMAVGL--------SDPR  112 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~--------~~-------~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--------~~~~  112 (197)
                      +.+.+|+|+|||+|..+..+.        +.       .+..+++.-|+-.+.....-+.++.....+        ...+
T Consensus        51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence            345799999999998877651        11       245788899987776655555544321000        0011


Q ss_pred             eEEEEcchHHHHh--hcCCceeEEEECCCCCCCCC-c-ccc--------------------------------cHHHHHH
Q psy4592         113 LTVHVGDGFRFMS--EHQQEFDVIITDSSDPVGPA-E-SLF--------------------------------QASYFEL  156 (197)
Q Consensus       113 ~~~~~~d~~~~~~--~~~~~~D~I~~~~~~~~~~~-~-~l~--------------------------------~~~~~~~  156 (197)
                      -.+..+....+..  .+.+++|+|+++...||... + .+.                                -..+++.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1244444333222  23679999999999999642 1 110                                0246888


Q ss_pred             HHhhcCCCcEEEEEcC
Q psy4592         157 MSRALRPGGIVCSQAG  172 (197)
Q Consensus       157 ~~~~LkpgG~l~~~~~  172 (197)
                      .++.|+|||.+++...
T Consensus       211 ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          211 RAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEEe
Confidence            8999999999999874

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.32  E-value=4.6e-07  Score=77.40  Aligned_cols=114  Identities=19%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC----CC---------CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH----PS---------VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~----~~---------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ..+.+|+|-+||+|++...+.+.    .+         ...++|+|+++.+..+|+-++-..  +  .....+..+|...
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh--g--~~~~~I~~~dtL~  291 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH--G--LEYPRIDPENSLR  291 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH--T--CSCCEEECSCTTC
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc--C--Ccccccccccccc
Confidence            34569999999999998765532    11         246999999999999998774321  1  1234566777543


Q ss_pred             HHhh---cCCceeEEEECCCCCCCCC------------cccccHHHHHHHHhhcC-------CCcEEEEEcCC
Q psy4592         123 FMSE---HQQEFDVIITDSSDPVGPA------------ESLFQASYFELMSRALR-------PGGIVCSQAGT  173 (197)
Q Consensus       123 ~~~~---~~~~~D~I~~~~~~~~~~~------------~~l~~~~~~~~~~~~Lk-------pgG~l~~~~~~  173 (197)
                      ....   ...+||+|++|||......            ..-..-.|++.+.+.||       |||++.+.+..
T Consensus       292 ~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          292 FPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             SCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             CchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            2111   1347999999999743210            00001347788888887       79998887644

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.30  E-value=1.9e-06  Score=69.93  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+||+.|+++..+.+..  ..|++||+.+ +-....          ..++++++.+|+..+.+ ...++|+|+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg--~~V~aVD~~~-l~~~l~----------~~~~V~~~~~d~~~~~~-~~~~~D~vv  275 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRN--MWVYSVDNGP-MAQSLM----------DTGQVTWLREDGFKFRP-TRSNISWMV  275 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT--CEEEEECSSC-CCHHHH----------TTTCEEEECSCTTTCCC-CSSCEEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCC--CEEEEEEhhh-cChhhc----------cCCCeEEEeCccccccC-CCCCcCEEE
Confidence            467899999999999999998874  6999999764 222111          23689999999876433 246899999


Q ss_pred             ECCC
Q psy4592         136 TDSS  139 (197)
Q Consensus       136 ~~~~  139 (197)
                      +|+.
T Consensus       276 sDm~  279 (375)
T 4auk_A          276 CDMV  279 (375)
T ss_dssp             ECCS
T ss_pred             EcCC
Confidence            9995

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.29  E-value=1.8e-06  Score=70.59  Aligned_cols=110  Identities=11%  Similarity=-0.020  Sum_probs=69.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcC-----------------CCCccEEEEEcC-----------HHHHHHHHhhcCCCCCCCC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH-----------------PSVESAYLVEID-----------NRVIEVSKKYLPGMAVGLS  109 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~-----------------~~~~~v~~ve~~-----------~~~~~~a~~~~~~~~~~~~  109 (197)
                      +.+|+|+||++|..+..+...                 .+..+++.-|+-           |.+.+.+++...      .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------~  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------R  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC------C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc------C
Confidence            679999999999877665432                 234567777765           334333333211      1


Q ss_pred             CCCeEEEEcchHHHHhh--cCCceeEEEECCCCCCCCCc--cccc---------------------------------HH
Q psy4592         110 DPRLTVHVGDGFRFMSE--HQQEFDVIITDSSDPVGPAE--SLFQ---------------------------------AS  152 (197)
Q Consensus       110 ~~~~~~~~~d~~~~~~~--~~~~~D~I~~~~~~~~~~~~--~l~~---------------------------------~~  152 (197)
                      ..+-.++.+....+...  +.+++|+|+++...||....  .+..                                 ..
T Consensus       127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            11235666655444332  36799999999999996321  1110                                 12


Q ss_pred             HHHHHHhhcCCCcEEEEEcCC
Q psy4592         153 YFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ||+.-++.|+|||++++....
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCeEEEEEec
Confidence            366778999999999998743

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.27  E-value=5.2e-06  Score=73.03  Aligned_cols=116  Identities=17%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC------------CCccEEEEEcCH---HHHHHHHhhcC-----------CCCC---C
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP------------SVESAYLVEIDN---RVIEVSKKYLP-----------GMAV---G  107 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~------------~~~~v~~ve~~~---~~~~~a~~~~~-----------~~~~---~  107 (197)
                      ++-+|+|+|.|+|.....+.+..            ...+++.+|..|   +.+..+-+.++           .|..   +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34599999999998776655421            125789999844   44433222111           1100   0


Q ss_pred             -----CC--CCCeEEEEcchHHHHhhc----CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         108 -----LS--DPRLTVHVGDGFRFMSEH----QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       108 -----~~--~~~~~~~~~d~~~~~~~~----~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                           +.  .-.+++..+|+.+.++.-    ..++|+++.|++.+.. ++.+++.+++..+.++++|||.+...+..
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~~~  213 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFSTFTAA  213 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                 11  125778999999988753    4689999999987665 44688899999999999999999875433

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.27  E-value=5.7e-06  Score=72.57  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             CeEEEEeCCchHhHHHHhcC------------CCCccEEEEEc---CHHHHHHHHhhcCC-----------CCC---C--
Q psy4592          59 KKVLIVGGGDGGVAREVLKH------------PSVESAYLVEI---DNRVIEVSKKYLPG-----------MAV---G--  107 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~------------~~~~~v~~ve~---~~~~~~~a~~~~~~-----------~~~---~--  107 (197)
                      -+|||+|.|+|......+..            ....+++++|.   +++.+..+-..++.           |..   +  
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            59999999999876665432            12246899998   77766633332111           100   0  


Q ss_pred             ---CC--CCCeEEEEcchHHHHhhc----CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         108 ---LS--DPRLTVHVGDGFRFMSEH----QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       108 ---~~--~~~~~~~~~d~~~~~~~~----~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                         +.  ...+++..+|+.+.++..    ..+||+|+.|++.+.. ++.+++.++++.++++++|||.+...+..
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence               01  135678899999988763    3689999999976554 45788999999999999999999976533

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.25  E-value=3.6e-06  Score=67.31  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hc--CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EH--QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~--~~  129 (197)
                      +++..++|..+|.|+.+.++++. .+..+++++|+||.+++.++ .+       ...++++++++..++..   ..  .+
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-------~~~Rv~lv~~nF~~l~~~L~~~g~~~  127 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-------DDPRFSIIHGPFSALGEYVAERDLIG  127 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-------CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-------cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence            45679999999999999999876 45679999999999999984 43       13589999998776533   21  13


Q ss_pred             ceeEEEECC
Q psy4592         130 EFDVIITDS  138 (197)
Q Consensus       130 ~~D~I~~~~  138 (197)
                      ++|.|+.|.
T Consensus       128 ~vDgILfDL  136 (347)
T 3tka_A          128 KIDGILLDL  136 (347)
T ss_dssp             CEEEEEEEC
T ss_pred             cccEEEECC
Confidence            699999985

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.19  E-value=2.6e-06  Score=69.12  Aligned_cols=114  Identities=12%  Similarity=0.063  Sum_probs=78.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC----------------CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH----------------PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~----------------~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      +++-+|+|+||++|..+..+...                .+..+++.-|+-.+....+-+.++...   ...+-.+..+.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~~~~~~f~~gv  126 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGV  126 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEE
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---ccCCCEEEEec
Confidence            45578999999999866554433                345789999998888888877765421   11133556665


Q ss_pred             hHHHHh--hcCCceeEEEECCCCCCCCC-c-c--------------------ccc-------HHHHHHHHhhcCCCcEEE
Q psy4592         120 GFRFMS--EHQQEFDVIITDSSDPVGPA-E-S--------------------LFQ-------ASYFELMSRALRPGGIVC  168 (197)
Q Consensus       120 ~~~~~~--~~~~~~D~I~~~~~~~~~~~-~-~--------------------l~~-------~~~~~~~~~~LkpgG~l~  168 (197)
                      ...+..  .+.+++|+|+++...||... + .                    .+.       ..|++.-++.|+|||.++
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv  206 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence            444332  23679999999999999532 1 1                    111       246888899999999999


Q ss_pred             EEcC
Q psy4592         169 SQAG  172 (197)
Q Consensus       169 ~~~~  172 (197)
                      +...
T Consensus       207 l~~~  210 (359)
T 1m6e_X          207 LTIL  210 (359)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9873

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.08  E-value=4.4e-06  Score=67.68  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCC---CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH
Q psy4592          20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSH---PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV   96 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~   96 (197)
                      ++.+|...+.|         .....++...+.....   .....|||||.|.|.++..++......++++||+|+.++..
T Consensus        27 kk~lGQnFL~d---------~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~   97 (353)
T 1i4w_A           27 KFFYGFKYLWN---------PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF   97 (353)
T ss_dssp             CCGGGCCCBCC---------HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHH
T ss_pred             CCCCCcCccCC---------HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHH
Confidence            56678776665         3344555555543211   03478999999999999999975333689999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .++.+.       .++++++.+|+.++
T Consensus        98 L~~~~~-------~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           98 LNAKFE-------GSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHTT-------TSSCEEECSCTTCH
T ss_pred             HHHhcc-------CCCEEEEECCccch
Confidence            988762       25899999999764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.88  E-value=5.1e-06  Score=58.55  Aligned_cols=39  Identities=23%  Similarity=0.173  Sum_probs=31.4

Q ss_pred             CCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHH
Q psy4592          56 PNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIE   95 (197)
Q Consensus        56 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~   95 (197)
                      ..+.+|||+|||.| ..+..|++..+ ..|+++|++|..++
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~   73 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGG   73 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccc
Confidence            34579999999999 58888886333 78999999987655

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.75  E-value=0.00032  Score=56.20  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +.+++|+.||.|+++..+.+.+ ...+.++|+++..++..+.+++..      .     .+|+.+........+|+|+.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~------~-----~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK------P-----EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC------C-----BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCC------C-----cCCHHHcCHhhCCCCCEEEEC
Confidence            3689999999999999988774 467899999999999999998631      1     588877544434569999999


Q ss_pred             CCCCC-CC--------C--cccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592         138 SSDPV-GP--------A--ESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS  190 (197)
Q Consensus       138 ~~~~~-~~--------~--~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~  190 (197)
                      +|... +.        +  ..|+ .++++ +.+.++|.-+++=|+.....  ....++.+++.+++
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L~-~~~~r-~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~  142 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTLF-FDIAR-IVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNE  142 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHH-HHHHH-HHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHH
T ss_pred             CCCCCcchhcccCCCcchhhHHH-HHHHH-HHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHh
Confidence            88532 21        1  1121 23443 44557998666656533211  12456666666654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.75  E-value=0.00011  Score=59.35  Aligned_cols=121  Identities=16%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I  134 (197)
                      +.+|+|+.||.|+++..+.+.+- ...+.++|+++..++..+.|++.         ..++.+|+.+.....  ...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~---------~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH---------TQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc---------cccccCCHHHccHhHcCcCCcCEE
Confidence            45899999999999998877642 25799999999999999998752         346678877643211  1269999


Q ss_pred             EECCCCCC-CC---C-------cccccHHHHHHHHhhcC--CCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         135 ITDSSDPV-GP---A-------ESLFQASYFELMSRALR--PGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       135 ~~~~~~~~-~~---~-------~~l~~~~~~~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +.++|... +.   .       ..++ .+++ .+.+.++  |.-+++=|+... .....++.+++.+++
T Consensus        73 ~~gpPCq~fS~ag~~~g~~d~r~~l~-~~~~-~~i~~~~~~P~~~~~ENV~~l-~~~~~~~~i~~~l~~  138 (343)
T 1g55_A           73 LMSPPCQPFTRIGRQGDMTDSRTNSF-LHIL-DILPRLQKLPKYILLENVKGF-EVSSTRDLLIQTIEN  138 (343)
T ss_dssp             EECCC------------------CHH-HHHH-HHGGGCSSCCSEEEEEEETTG-GGSHHHHHHHHHHHH
T ss_pred             EEcCCCcchhhcCCcCCccCccchHH-HHHH-HHHHHhcCCCCEEEEeCCccc-cCHHHHHHHHHHHHH
Confidence            99998422 11   0       1111 2233 3445666  876666444332 223556666666654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.72  E-value=3.2e-05  Score=61.13  Aligned_cols=46  Identities=20%  Similarity=0.086  Sum_probs=40.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      .++..|||++||+|..+.++.+.+  .+++++|+++.+++.|++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            456799999999999999888764  5899999999999999988653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.53  E-value=0.00011  Score=60.12  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-------cCCce
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-------HQQEF  131 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~  131 (197)
                      .+++|+.||.|+++..+.+.+ ...+.++|+++..++..+.|++         +..++++|+.+....       ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcCHHHHHhhcccCCCe
Confidence            489999999999998887764 3577899999999999998864         356777887754221       13579


Q ss_pred             eEEEECCCCCC-CCC---------cccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592         132 DVIITDSSDPV-GPA---------ESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS  190 (197)
Q Consensus       132 D~I~~~~~~~~-~~~---------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~  190 (197)
                      |+|+.++|+.. +..         ..|+ .+++ .+.+.++|.-+++=|+.....  ....++.++ .+.+
T Consensus        73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L~-~~~~-~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~  140 (376)
T 3g7u_A           73 DGIIGGPPCQGFSSIGKGNPDDSRNQLY-MHFY-RLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVS  140 (376)
T ss_dssp             CEEEECCCCCTTC-------CHHHHHHH-HHHH-HHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHH
T ss_pred             eEEEecCCCCCcccccCCCCCCchHHHH-HHHH-HHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHc
Confidence            99999998533 210         1111 2233 344567998777766633221  123455555 5543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.41  E-value=0.00098  Score=51.50  Aligned_cols=108  Identities=15%  Similarity=0.055  Sum_probs=71.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-------CCCccEEEEEc-----CH----------------------HHHH-HH--H
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-------PSVESAYLVEI-----DN----------------------RVIE-VS--K   98 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~ve~-----~~----------------------~~~~-~a--~   98 (197)
                      .-+..|+|+|+-.|..+..++..       ....++.++|.     .+                      +.++ ..  +
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            44679999999999877765431       23468999992     21                      0011 11  1


Q ss_pred             hhcCCCCCCCCCCCeEEEEcchHHHHhh-----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592          99 KYLPGMAVGLSDPRLTVHVGDGFRFMSE-----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .++...  +...++++++.|++.+.++.     +..++|+|+.|.-.      .-.+...++.+...|+|||++++--
T Consensus       148 ~~~~~~--g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~------Y~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          148 ECSDFF--GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL------YEPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             HTTSTT--TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC------HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             hhhhhc--CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc------cchHHHHHHHHHHHhCCCcEEEEcC
Confidence            122211  11236899999999988765     24579999999831      1113568999999999999999854

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.26  E-value=0.0013  Score=52.69  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+||.+|+|. |.++..+++..+ .++++++.+++-.+.+++.-.       ..-+.....|..+.+....+.+|+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa-------~~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGA-------EVAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHcCC-------CEEEeCCCcCHHHHHHHhCCCCCEE
Confidence            5668999999875 777777887665 599999999999998877421       1011111134433333333479999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.+..          ....++.+.+.|+++|.+++..
T Consensus       237 id~~g----------~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          237 LVTAV----------SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EESSC----------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             EEeCC----------CHHHHHHHHHHhccCCEEEEeC
Confidence            86542          1567889999999999998864

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.24  E-value=0.0035  Score=49.91  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=79.5

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS  139 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~  139 (197)
                      +|+|+-||.|++...+.+.+ ...+.++|+++...+..+.|++          -+++.+|+.+.-...-...|+++..+|
T Consensus         2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCCHhhCCcccEEEecCC
Confidence            79999999999998887764 4678899999999999998864          256789988754444567999999987


Q ss_pred             CCC-C--------CC--cccccHHHHHHHHhhcCCCcEEEEEcCCCC--cChhHHHHHHHHHHh
Q psy4592         140 DPV-G--------PA--ESLFQASYFELMSRALRPGGIVCSQAGTLW--YSLDCVGNTLQHCAS  190 (197)
Q Consensus       140 ~~~-~--------~~--~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~  190 (197)
                      ... +        .+  ..|+ .+++ .+.+.++|.-+++=|+....  .....++.+++.+.+
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~-~~~~-r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~  132 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLF-YEYI-RILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDN  132 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHH-HHHH-HHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHH
T ss_pred             CCCcCCCCCccCCCCchhHHH-HHHH-HHHhccCCeEEEeeeecccccccccchhhhhhhhhcc
Confidence            522 1        11  1121 2233 34566799876665553211  123566666666654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.23  E-value=0.00044  Score=54.53  Aligned_cols=63  Identities=21%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             CCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCc-----cc--------c---cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         111 PRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAE-----SL--------F---QASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~-----~l--------~---~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+++++++|+.+.++. .+++||+|++|||.......     .+        +   -..+++++.++|||||.+++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            4678999999997764 35789999999997432110     00        0   134677899999999999998654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.19  E-value=0.0013  Score=52.46  Aligned_cols=65  Identities=12%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             CCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCc---c-------cccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         110 DPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAE---S-------LFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       110 ~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~---~-------l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ..+..++++|+.+.+.. ..+++|+|++|||.......   .       ......+++++++|+|||.+++.....
T Consensus        12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            45788999999887764 35789999999997543210   0       012567888999999999999987554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.17  E-value=0.0016  Score=52.73  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=65.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      ..+.+||.+|+|. |.++..+++..+...|++++.+++-.+.+++.-.       ..-+.....|..+.+.. ..+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-------CEEecCCccCHHHHHHHhcCCCCcE
Confidence            5568999999875 6666777776553479999999999998876421       10111111233333332 2337999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....          ....++.+.+.|+++|.+++..
T Consensus       262 vid~~g----------~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          262 ALESTG----------SPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEECSC----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             EEECCC----------CHHHHHHHHHHHhcCCEEEEeC
Confidence            985542          1457788999999999998864

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.15  E-value=0.00049  Score=53.23  Aligned_cols=46  Identities=15%  Similarity=0.013  Sum_probs=40.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      .++..|||..||+|..+.++.+.+  .+++++|+++..++.+++++..
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            566799999999999998887764  6899999999999999998753

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.12  E-value=0.002  Score=54.30  Aligned_cols=124  Identities=18%  Similarity=0.122  Sum_probs=81.0

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------------  125 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------  125 (197)
                      ..+++|+.||.|++...+.+.+ ...+.++|+++...+..+.|+..      .+...++.+|+.+...            
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG-~~~v~avE~d~~A~~ty~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYC------DPATHHFNEDIRDITLSHQEGVSDEAAA  160 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTT-EEEEEEECCCHHHHHHHHHHSCC------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHhccc------CCCcceeccchhhhhhccccccchhhHH
Confidence            3589999999999998887764 35689999999999999988742      2355677899987652            


Q ss_pred             ----hcCCceeEEEECCCCCC-CCC-------------------cccccHHHHHHHHhhcCCCcEEEEEcCCCCc--Chh
Q psy4592         126 ----EHQQEFDVIITDSSDPV-GPA-------------------ESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLD  179 (197)
Q Consensus       126 ----~~~~~~D~I~~~~~~~~-~~~-------------------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~  179 (197)
                          .....+|+|+..+|+.. +..                   ..|+ .+++ .+.+.++|.-+++=|+.....  ...
T Consensus       161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf-~e~~-riI~~~rPk~fvlENV~gl~s~~~g~  238 (482)
T 3me5_A          161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLF-FDVV-RIIDARRPAMFVLENVKNLKSHDKGK  238 (482)
T ss_dssp             HHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHH-HHHH-HHHHHHCCSEEEEEEETTTTTGGGGH
T ss_pred             hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHH-HHHH-HHHHHcCCcEEEEeCcHHHhcccCCc
Confidence                12356899999987532 211                   0111 2222 234556898776666643221  234


Q ss_pred             HHHHHHHHHHh
Q psy4592         180 CVGNTLQHCAS  190 (197)
Q Consensus       180 ~~~~~~~~~~~  190 (197)
                      .++.+++.|.+
T Consensus       239 ~f~~i~~~L~~  249 (482)
T 3me5_A          239 TFRIIMQTLDE  249 (482)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            56666666654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.09  E-value=0.0031  Score=50.63  Aligned_cols=120  Identities=14%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I~  135 (197)
                      .+++|+.||.|++...+.+.+- ...+.++|+++...+..+.|++.         ..++.+|+.+....  ....+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~---------~~~~~~DI~~~~~~~~~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE---------TNLLNRNIQQLTPQVIKKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC---------CceeccccccCCHHHhccCCCCEEE
Confidence            4899999999999988876532 25688999999999999998753         23556777654222  123699999


Q ss_pred             ECCCCCC-C----------CCcccccHHHHHHHHhhcC-CCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         136 TDSSDPV-G----------PAESLFQASYFELMSRALR-PGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       136 ~~~~~~~-~----------~~~~l~~~~~~~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      ..+|... +          +...++ .+++ .+.+.++ |.-+++=|+... .....++.+.+.+++
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~-~~~~-r~i~~~~~P~~~vlENV~gl-~~~~~~~~i~~~l~~  138 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSF-LYLI-GILDQLDNVDYILMENVKGF-ENSTVRNLFIDKLKE  138 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCH-HHHH-HHGGGCTTCCEEEEEECTTG-GGSHHHHHHHHHHHH
T ss_pred             ecCCCcchhhhhhccCCcCcccccH-HHHH-HHHHHhcCCCEEEEecchhh-hhhhHHHHHHHHHHh
Confidence            9988532 1          111222 2333 3445555 876666555332 223445666666654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.06  E-value=0.003  Score=50.55  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=74.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC-CCccE-EEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP-SVESA-YLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v-~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      .+.+++|+.||.|++...+.+.+ +...+ .++|+++...+..+.|++..          ++.+|+.+....  ....+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCCCC
Confidence            45699999999999998887764 22456 79999999999999998531          344565543211  113699


Q ss_pred             EEEECCCC-CC--C---CCcccc--cHHHHHHHHh----hc--CCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592         133 VIITDSSD-PV--G---PAESLF--QASYFELMSR----AL--RPGGIVCSQAGTLWYSLDCVGNTLQHCAS  190 (197)
Q Consensus       133 ~I~~~~~~-~~--~---~~~~l~--~~~~~~~~~~----~L--kpgG~l~~~~~~~~~~~~~~~~~~~~~~~  190 (197)
                      +++..+|. +.  +   ......  ...++.++.+    .+  +|.-+++=|+... .....++.+.+.+++
T Consensus        79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl-~~~~~~~~i~~~l~~  149 (327)
T 3qv2_A           79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF-KESLVFKEIYNILIK  149 (327)
T ss_dssp             EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG-GGSHHHHHHHHHHHH
T ss_pred             EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh-cChHHHHHHHHHHHh
Confidence            99999885 33  1   110111  1234444444    45  6765555544222 123456666666654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=97.05  E-value=0.00077  Score=47.69  Aligned_cols=113  Identities=16%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             HHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        46 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      .+.+.......-+.-|||+|.|+|..-..+.+..+...|.++|-.-..-       +.   . -++.-.++.||+++.++
T Consensus        29 ~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~h-------p~---~-~P~~e~~ilGdi~~tL~   97 (174)
T 3iht_A           29 CLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH-------PD---S-TPPEAQLILGDIRETLP   97 (174)
T ss_dssp             HHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC-------GG---G-CCCGGGEEESCHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccC-------CC---C-CCchHheecccHHHHHH
Confidence            3333333333445689999999999888888888888999999632110       10   0 23456789999999887


Q ss_pred             hc----CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         126 EH----QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       126 ~~----~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      ..    ..+.-++..|.-.+...........+-..+..+|.|||.++-
T Consensus        98 ~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A           98 ATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             HHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            63    567778888875433221111112233456789999999885

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.02  E-value=0.0033  Score=50.63  Aligned_cols=97  Identities=19%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc------chHHHHhh-
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG------DGFRFMSE-  126 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~-  126 (197)
                      ...+.+||.+|+|. |.++..+++..+..++++++.+++-.+.+++. ..        . .++..      |..+.+.. 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga--------~-~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GA--------D-LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC--------S-EEEECSSCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC--------C-EEEcCcccccchHHHHHHHH
Confidence            35668999999875 66667777765534899999999988888763 11        1 12221      21122221 


Q ss_pred             cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 ~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....+|+|+....          ....++.+.+.|+++|.+++..
T Consensus       239 ~~~g~D~vid~~g----------~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          239 LGCKPEVTIECTG----------AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HTSCCSEEEECSC----------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             hCCCCCEEEECCC----------ChHHHHHHHHHhcCCCEEEEEe
Confidence            2256999986542          1446788899999999998864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.01  E-value=0.008  Score=48.41  Aligned_cols=99  Identities=20%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-----cchHHHHhh-c
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-----GDGFRFMSE-H  127 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~-~  127 (197)
                      ...+.+||.+|+|. |.++..+++..+...|++++.+++-.+.+++. ..       ..+.+..     .|..+.+.. .
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-------~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-------EVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-------TCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-------hcccccccccchHHHHHHHHHHh
Confidence            35678999999864 56667777766644599999999999999886 31       1233321     222222322 1


Q ss_pred             -CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 -QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 -~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...+|+|+-...          .+..++.+.+.|+++|.+++..
T Consensus       249 ~g~g~Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          249 GGIEPAVALECTG----------VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SSCCCSEEEECSC----------CHHHHHHHHHHSCTTCEEEECC
T ss_pred             CCCCCCEEEECCC----------ChHHHHHHHHHhcCCCEEEEEc
Confidence             357999986442          1457788999999999999864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.00  E-value=0.0012  Score=52.20  Aligned_cols=76  Identities=20%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCcc-EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCce
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVES-AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~  131 (197)
                      +.+.+++|+.||.|++...+.+.+-... +.++|+++...+..+.+++         ...++.+|+.+.....   .+.+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~~~~~   84 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQEWGPF   84 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHHTCCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcccCCc
Confidence            4556999999999999988877642222 6899999999998888764         2356778887643221   2479


Q ss_pred             eEEEECCCC
Q psy4592         132 DVIITDSSD  140 (197)
Q Consensus       132 D~I~~~~~~  140 (197)
                      |+|+..+|.
T Consensus        85 Dll~ggpPC   93 (295)
T 2qrv_A           85 DLVIGGSPC   93 (295)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecCCC
Confidence            999999875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.97  E-value=0.0019  Score=51.57  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CeEEE-EcchHHHHhh-cCCceeEEEECCCCCCCCC------cc-cccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         112 RLTVH-VGDGFRFMSE-HQQEFDVIITDSSDPVGPA------ES-LFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       112 ~~~~~-~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~------~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ...++ ++|+.+.+.. ..+++|+|+.|||.....+      .. -+....+.++.++|+|+|.+++.....
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            46788 9999988875 3568999999999755411      10 012567788899999999999987543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.95  E-value=0.0026  Score=51.09  Aligned_cols=100  Identities=13%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      ..++.+||.+|+|. |.++..+++..+..+|++++.+++-++.+++.-.       ..-+.....|..+.+.. . ...+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA-------TDIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC-------CEEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------ceEEcCCCcCHHHHHHHHcCCCCC
Confidence            35678999999875 6666777777664489999999998898887521       10111112344443333 2 3369


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+....     .     ...++.+.+.|+++|.+++..
T Consensus       237 D~v~d~~g-----~-----~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          237 DKVVIAGG-----D-----VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEECSS-----C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCC-----C-----hHHHHHHHHHHhcCCEEEEec
Confidence            99985432     1     236788899999999998764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.88  E-value=0.0016  Score=50.26  Aligned_cols=60  Identities=12%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CeEEEEcchHHHHhh-cCCceeEEEECCCCCCC-CCcc-c--------ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         112 RLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVG-PAES-L--------FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       112 ~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~-~~~~-l--------~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..+++++|+.+.+.. ..+++|+|+.|||.... .... .        +....++.+.++|+|+|.+++..
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            346889999888776 35689999999997544 1110 0        22567788899999999999864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.83  E-value=0.004  Score=50.50  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCc
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~  130 (197)
                      +.+.+||.+|+|. |.++..+++..+..++++++.+++-.+.+++.-.       ..-+.+...|..+.+..    ..+.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA-------TATVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-------SEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------CEEECCCCcCHHHHHHhhhhccCCC
Confidence            5678999999864 5566667776654489999999999998887421       10111112344444432    2347


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+-...          ....++.+.+.|+++|.+++..
T Consensus       254 ~Dvvid~~G----------~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          254 VDVVIECAG----------VAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEEECSC----------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCC----------CHHHHHHHHHHhccCCEEEEEe
Confidence            999985431          1457889999999999998865

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.79  E-value=8.6e-05  Score=73.52  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCC-----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPS-----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ..+||+||.|+|..+..+.....     ..+++..|+++...+.+++.+..+       +++...-|..+........||
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-------TEEEECCCSSCCCC-----CC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-------ccccccccccccccCCCCcee
Confidence            36999999999987655443211     247889999998887777665321       122111121100000134699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|++....|..++.    .+.+++++++|||||++++..
T Consensus      1314 lvia~~vl~~t~~~----~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1314 LLVCNCALATLGDP----AVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEEEECC------------------------CCEEEEEE
T ss_pred             EEEEcccccccccH----HHHHHHHHHhcCCCcEEEEEe
Confidence            99987766654433    567899999999999988754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.73  E-value=0.0052  Score=49.14  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D  132 (197)
                      ..+.+||.+|+|. |.++..+++..+..+++++|.+++-.+.+++.-.       ..-+.. ..|..+.+.. . ...+|
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-------~~~i~~-~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-------DAAVKS-GAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-------SEEEEC-STTHHHHHHHHHGGGCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------CEEEcC-CCcHHHHHHHHhCCCCCe
Confidence            5668999999865 5666667765544799999999999999877421       111111 1133332322 1 24799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-...          .+..++.+.+.|+++|.+++..
T Consensus       242 ~v~d~~G----------~~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          242 AVFDFVG----------AQSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEESSC----------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEECCC----------CHHHHHHHHHHHhcCCEEEEEC
Confidence            9986542          1457889999999999999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.73  E-value=0.0042  Score=50.81  Aligned_cols=108  Identities=10%  Similarity=0.079  Sum_probs=66.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch-HHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG-FRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~-~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+..+|++++.+++-++.+++. .       ...+.+...|. .+.+.. . ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G-------a~~i~~~~~~~~~~~~~~~~~g~g~  255 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-G-------FETIDLRNSAPLRDQIDQILGKPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-T-------CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-C-------CcEEcCCCcchHHHHHHHHhCCCCC
Confidence            5668999999876 66777777765534899999999998888753 1       11111111232 232322 2 2369


Q ss_pred             eEEEECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-.........    .+......++.+.+.|+++|.+++..
T Consensus       256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            99987653221000    00011346788999999999998754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.72  E-value=0.0076  Score=48.86  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE--EcchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH--VGDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~-~~~~~  131 (197)
                      +.+.+||.+|+|. |.++..+++..+..+|+++|.+++-++.+++. ..      ..-+...  ..|..+.+.. ..+.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-Ga------~~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-GV------NEFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-TC------CEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------cEEEccccCchhHHHHHHHhcCCCC
Confidence            5668999999863 56666677765544899999999999988763 11      1001111  1233333333 33489


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-...          ....++.+.+.|+++ |.+++..
T Consensus       265 D~vid~~g----------~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          265 DYSFECIG----------NVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             SEEEECSC----------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCC----------CHHHHHHHHHHhhccCCEEEEEc
Confidence            99986542          145788999999997 9998865

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.63  E-value=0.011  Score=47.12  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCce
Q psy4592          55 HPNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~  131 (197)
                      .+++.+||.+|+|.++ ++..+++.....+|++++.+++-.+.+++.-.       ..-+.....|..+.+...  ...+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga-------~~~i~~~~~~~~~~v~~~t~g~g~  233 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA-------DVTINSGDVNPVDEIKKITGGLGV  233 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC-------SEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC-------eEEEeCCCCCHHHHhhhhcCCCCc
Confidence            3566899999998654 44445554445799999999998888877532       112333444555444432  3357


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |.++.+..          ....+..+.+.|+++|.+++..
T Consensus       234 d~~~~~~~----------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          234 QSAIVCAV----------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEEECCS----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEecc----------CcchhheeheeecCCceEEEEe
Confidence            87776542          1567788999999999988765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.60  E-value=0.0011  Score=53.05  Aligned_cols=63  Identities=10%  Similarity=-0.031  Sum_probs=48.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      .++..|||..||+|..+.++.+.+  .+.+++|+++...+.+++++...     ....+.++.|+.+...
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~i~~  313 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLDN-----NISEEKITDIYNRILN  313 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCS-----CSCHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHc
Confidence            456799999999999988877764  68999999999999999998752     2345556666665443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.59  E-value=0.012  Score=47.21  Aligned_cols=98  Identities=21%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-c----C
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-H----Q  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~----~  128 (197)
                      .++.+||.+|+|. |.++..+++..+ .+|++++.+++-.+.+++.-.       ..-+.... .|..+.+.. .    .
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGA-------DVTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-------SEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhCC-------CEEEcCcccccHHHHHHHHhccccC
Confidence            5668999999864 556666776555 569999999999898876311       10111110 222222222 1    2


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..+|+|+....     .     ...++.+.+.|+++|.+++..
T Consensus       239 ~g~D~vid~~g-----~-----~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          239 DLPNVTIDCSG-----N-----EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SCCSEEEECSC-----C-----HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCEEEECCC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence            56999986542     1     346788899999999998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.58  E-value=0.012  Score=47.95  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc-hHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD-GFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~-~-~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+...|+++|.+++-++.+++. .       -..+.+...+ ..+.+.. . ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-G-------a~~i~~~~~~~~~~~v~~~t~g~g~  255 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-G-------FEIADLSLDTPLHEQIAALLGEPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T-------CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-C-------CcEEccCCcchHHHHHHHHhCCCCC
Confidence            4668999999865 66677777765544799999999999998763 1       1111111112 2333332 2 2479


Q ss_pred             eEEEECCCCCCCC-----CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGP-----AESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~-----~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-........     ..+......++.+.+.|+++|.+++..
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          256 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            9998765322100     000111347788999999999998754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.56  E-value=0.016  Score=46.87  Aligned_cols=99  Identities=11%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+..+|++++.+++-.+.+++. ..     + .-+....  .|..+.+.. ..+.+
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga-----~-~vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GA-----T-DFVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC-----C-EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC-----c-eEEeccccchhHHHHHHHHhCCCC
Confidence            4568999999764 55666677665534799999999999988763 21     0 0011100  123333322 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+....     .     ...++.+.+.|+++ |.+++..
T Consensus       264 D~vid~~g-----~-----~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          264 DFSLECVG-----N-----VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             SEEEECSC-----C-----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCC-----C-----HHHHHHHHHHhhcCCcEEEEEc
Confidence            99985542     1     45778899999999 9998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.53  E-value=0.0075  Score=48.01  Aligned_cols=99  Identities=12%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCce
Q psy4592          55 HPNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~  131 (197)
                      .+++++||.+|+  |.|..+..+++..+ .++++++.+++-.+.+.+.+..      ..-+.....|..+.+.. ..+.+
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKCRFLVEELGF------DGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCC------SEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCC------CEEEECCCHHHHHHHHHhcCCCc
Confidence            356789999998  45566666666555 5999999999988888443321      10111111233333332 24579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+.-           ...++.+.+.|+++|.+++..
T Consensus       220 d~vi~~~g-----------~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          220 DVFFDNVG-----------GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             EEEEESSC-----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCC-----------cchHHHHHHHHhhCCEEEEEe
Confidence            99986552           246788999999999998754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.51  E-value=0.0032  Score=46.17  Aligned_cols=97  Identities=18%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      .++++||..|+  |.|.....+++..+ .++++++.+++..+.+++. .      ....+.....+..+.+.. . ...+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g------~~~~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-G------VEYVGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-C------CSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-C------CCEEeeCCcHHHHHHHHHHhCCCCC
Confidence            45679999995  44555555555434 6899999999888777552 1      110111111233232322 1 2469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+..           ...++.+.+.|+++|.+++..
T Consensus       109 D~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          109 DVVLNSLA-----------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             EEEEECCC-----------THHHHHHHHTEEEEEEEEECS
T ss_pred             eEEEECCc-----------hHHHHHHHHHhccCCEEEEEc
Confidence            99996542           135688899999999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.50  E-value=0.018  Score=46.56  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=63.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+..+|++++.+++-.+.+++. ..     + .-+....  .|..+.+.. ..+.+
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-----~-~vi~~~~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GA-----T-DCLNPRELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC-----S-EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC-----c-EEEccccccchHHHHHHHHhCCCc
Confidence            4568999999763 55666677765534899999999998888763 11     0 0011100  223333322 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-...     .     ...++.+.+.|+++ |.+++..
T Consensus       267 Dvvid~~G-----~-----~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          267 DYSLDCAG-----T-----AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             SEEEESSC-----C-----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEECCC-----C-----HHHHHHHHHHhhcCCCEEEEEC
Confidence            99985442     1     45778999999999 9998754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.47  E-value=0.02  Score=46.28  Aligned_cols=99  Identities=10%  Similarity=0.022  Sum_probs=63.5

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      +.+.+||.+|+|. |.++..+++..+..+|++++.+++-.+.+++. ..      ..-+....  .|..+.+.. ..+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga------~~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GA------TECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC------SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------ceEecccccchhHHHHHHHHhCCCC
Confidence            4568999999764 55666666665534799999999998888763 11      00011100  123333332 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+....     .     ...++.+.+.|+++ |.+++..
T Consensus       263 D~vid~~g-----~-----~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          263 DFSFEVIG-----R-----LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SEEEECSC-----C-----HHHHHHHHHHBCTTTCEEEECS
T ss_pred             cEEEECCC-----C-----HHHHHHHHHHhhcCCcEEEEec
Confidence            99985542     1     45778899999999 9998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.46  E-value=0.016  Score=46.84  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=63.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+..+|++++.+++-.+.+++. ..      ..-+....  .|..+.+.. ..+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga------~~vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GA------TECLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TC------SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence            4568999999864 55566666655534799999999998988763 21      00011110  233333332 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+-...     .     ...++.+.+.|+++ |.+++..
T Consensus       263 Dvvid~~g-----~-----~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          263 DYAVECAG-----R-----IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SEEEECSC-----C-----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CEEEECCC-----C-----HHHHHHHHHHHhcCCCEEEEEc
Confidence            99985442     1     45778899999999 9998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.36  E-value=0.02  Score=46.20  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=63.5

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~  131 (197)
                      ..+.+||.+|+|. |.++..+++..+..++++++.+++-.+.+++.-.      + .-+....  .|..+.+.. ..+.+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA------T-ECINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC------S-EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c-eEeccccccccHHHHHHHHhCCCC
Confidence            4568999999764 5556666665553479999999999898876421      0 0011100  123333332 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      |+|+....     .     ...++.+.+.|+++ |.+++..
T Consensus       262 D~vid~~g-----~-----~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          262 DYSFECIG-----N-----VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SEEEECSC-----C-----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCC-----c-----HHHHHHHHHhhccCCcEEEEEe
Confidence            99985542     1     45678899999999 9998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.34  E-value=0.0097  Score=47.28  Aligned_cols=97  Identities=10%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~  131 (197)
                      ..+++||..|+  |.|..+..+++..+ .++++++.+++.++.+++. ..      ...+.+.. .+..+.+.. ..+.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF------DAAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------SEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC------cEEEecCCHHHHHHHHHHHhCCCC
Confidence            45689999997  45555555555544 5899999999888887442 21      10111111 233333332 23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+..           ...++.+.+.|+++|.+++..
T Consensus       216 d~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          216 DCYFDNVG-----------GEFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEESSC-----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCC-----------hHHHHHHHHHHhcCCEEEEEe
Confidence            99987652           235688889999999998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.33  E-value=0.036  Score=44.13  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          55 HPNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      ...+.+||..|+|.. .++..+++..+...+++++.+++-++.+++.-.       ..-+.....|..+....  ....+
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEeCCCCCHHHHHHhhcccCCc
Confidence            356689999998754 345556666565678899999999999987421       11122222333333322  23467


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+...-          ....++.+.+.|+++|.+++..
T Consensus       231 d~v~d~~G----------~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          231 QLILETAG----------VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEEECSC----------SHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccccccc----------ccchhhhhhheecCCeEEEEEe
Confidence            88875431          1567888999999999999865

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.28  E-value=0.0099  Score=47.46  Aligned_cols=98  Identities=13%  Similarity=0.058  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCc
Q psy4592          55 HPNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~  130 (197)
                      .+.+++||.+|+|  .|..+..+++..+ .++++++.+++-++.+++.-.       ..-+.....|..+.+.. . ...
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lga-------~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGA-------AYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhCCC-------cEEEeCCcccHHHHHHHHhCCCC
Confidence            3566899999987  4566666776555 689999999988888877421       10111111233333332 2 347


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+.+..           ........+.|+++|.+++..
T Consensus       214 ~Dvvid~~g-----------~~~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          214 ADAAIDSIG-----------GPDGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEEESSC-----------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEECCC-----------ChhHHHHHHHhcCCCEEEEEe
Confidence            999986552           122344558999999999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.20  E-value=0.0097  Score=47.50  Aligned_cols=98  Identities=20%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +.+++||.+|+| .|..+..+++..+ .++++++.+++-++.+++. ..     + .-+.+...|..+.+....+.+|+|
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga-----~-~~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKEL-GA-----D-LVVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TC-----S-EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHC-CC-----C-EEecCCCccHHHHHHHHhCCCCEE
Confidence            566899999985 3556666666555 5999999999988888763 21     0 001111123322222211579999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....     .     ...++.+.+.|+++|.+++..
T Consensus       235 id~~g-----~-----~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          235 VVTAV-----S-----KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             EESSC-----C-----HHHHHHHHHHEEEEEEEEECC
T ss_pred             EECCC-----C-----HHHHHHHHHHhhcCCEEEEec
Confidence            86552     1     356788899999999988754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.15  E-value=0.011  Score=47.22  Aligned_cols=98  Identities=23%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCceeE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D~  133 (197)
                      .+.+||.+|+|. |..+..+++..+..++++++.+++-.+.+++.-.      + .-+.....|..+.+.. . ...+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga------~-~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA------D-YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC------S-EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------C-EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            567999999853 5556666665553389999999998888876421      0 0011111233333332 1 236999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....     .     ...++.+.+.|+++|.++...
T Consensus       240 vid~~g-----~-----~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          240 FLEFSG-----A-----PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEECSC-----C-----HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCC-----C-----HHHHHHHHHHHhcCCEEEEEc
Confidence            986552     1     457788999999999988764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.13  E-value=0.014  Score=47.34  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc------chHHHHhh-c
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG------DGFRFMSE-H  127 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~-~  127 (197)
                      +.+.+||.+|+|. |.++..+++..+..+|++++.+++-.+.+++. ..        . .++..      |..+.+.. .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga--------~-~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA--------D-LTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC--------S-EEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CC--------c-EEEeccccCcchHHHHHHHHh
Confidence            4568999999653 55566666665535899999999998888753 21        1 12221      22222222 2


Q ss_pred             -CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 -QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 -~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...+|+|+-...     .     ...++.+.+.|+++|.++...
T Consensus       264 ~g~g~Dvvid~~g-----~-----~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATG-----D-----SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSS-----C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence             236999986542     1     235688889999999998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.11  E-value=0.017  Score=46.74  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+.+||.+|+|. |.++..+++..+ .++++++.+++-.+.+++. ..        . .++...-.++.......+|+|
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~l-Ga--------~-~vi~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL-GA--------D-EVVNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TC--------S-EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC--------c-EEeccccHHHHHHhhcCCCEE
Confidence            4568999999874 566666776655 5799999999998888763 21        1 122111122222222579999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.....    .      ..++.+.+.|+++|.++...
T Consensus       262 id~~g~----~------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          262 LNTVAA----P------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EECCSS----C------CCHHHHHTTEEEEEEEEECC
T ss_pred             EECCCC----H------HHHHHHHHHhccCCEEEEec
Confidence            865421    1      13467889999999988754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.10  E-value=0.018  Score=45.91  Aligned_cols=98  Identities=8%  Similarity=0.059  Sum_probs=63.1

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~  131 (197)
                      ..+++||.+|+  |.|..+..+++..+ .++++++.+++-++.+++.+..      ..-+.+.. .+..+.+.. ....+
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~g~------~~~~d~~~~~~~~~~~~~~~~~~~  226 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKFGF------DDAFNYKEESDLTAALKRCFPNGI  226 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTSCC------SEEEETTSCSCSHHHHHHHCTTCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCC------ceEEecCCHHHHHHHHHHHhCCCC
Confidence            45689999997  45566666666555 6899999999888888743321      00011111 133333332 23469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..           ...++.+.+.|+++|.+++..
T Consensus       227 d~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          227 DIYFENVG-----------GKMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEEESSC-----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             cEEEECCC-----------HHHHHHHHHHHhcCCEEEEEc
Confidence            99986652           236788899999999998754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.07  E-value=0.018  Score=46.33  Aligned_cols=94  Identities=14%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             CeEEEEeCCc-hHhH-HHHh-cCCCCccEEEEEcCHH---HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          59 KKVLIVGGGD-GGVA-REVL-KHPSVESAYLVEIDNR---VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~-G~~~-~~l~-~~~~~~~v~~ve~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      .+||.+|+|. |.++ ..++ +..+..+|++++.+++   -.+.+++. ..       ..+.....|..+ +....+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga-------~~v~~~~~~~~~-i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-DA-------TYVDSRQTPVED-VPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-TC-------EEEETTTSCGGG-HHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-CC-------cccCCCccCHHH-HHHhCCCCC
Confidence            7999999853 5566 6777 7665334999999988   78888753 11       111111123223 221123799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-...     .     ...++.+.+.|+++|.+++..
T Consensus       245 vvid~~g-----~-----~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          245 FIYEATG-----F-----PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             EEEECSC-----C-----HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCC-----C-----hHHHHHHHHHHhcCCEEEEEe
Confidence            9985442     1     346788999999999998865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.05  E-value=0.021  Score=46.76  Aligned_cols=100  Identities=15%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D  132 (197)
                      ..+.+||.+|+|. |.++..+++..+..++++++.+++-.+.+++.-..       .-+.....|..+.+.. . ...+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-------HVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------EEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence            4568999999864 45566667665544899999999999998875210       0011111243333333 2 34699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhc----CCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRAL----RPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~L----kpgG~l~~~~  171 (197)
                      +|+-...     ..    ...++.+.+.|    +++|.+++..
T Consensus       285 ~vid~~g-----~~----~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          285 LFLEATG-----VP----QLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             EEEECSS-----CH----HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             EEEECCC-----Cc----HHHHHHHHHHHHhccCCCcEEEEeC
Confidence            9985442     11    12445555555    9999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.05  E-value=0.017  Score=46.54  Aligned_cols=97  Identities=11%  Similarity=0.113  Sum_probs=62.7

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D  132 (197)
                      +.+.+||.+|+|. |.++..+++..+ .++++++.+++-.+.+++.-.       ..-+.....|..+.+.. . ...+|
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~~~g~g~D  259 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFALGA-------DHGINRLEEDWVERVYALTGDRGAD  259 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHcCC-------CEEEcCCcccHHHHHHHHhCCCCce
Confidence            4568999999764 556666676655 599999999998888877421       10111000233333332 2 34799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....     .      ..++.+.+.|+++|.+++..
T Consensus       260 ~vid~~g-----~------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          260 HILEIAG-----G------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEEEETT-----S------SCHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCC-----h------HHHHHHHHHhhcCCEEEEEe
Confidence            9986552     1      13577888999999999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.93  E-value=0.0099  Score=47.53  Aligned_cols=94  Identities=10%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch-HHHHhh-c-CCc
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG-FRFMSE-H-QQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~-~~~  130 (197)
                      .+.+||.+|+|. |.++..+++..  + .++++++.+++-.+.+++. ..        . .++..+- .+.... . ...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~l-Ga--------~-~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALEL-GA--------D-YVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHH-TC--------S-EEECHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHh-CC--------C-EEeccccchHHHHHhhcCCC
Confidence            567999999864 55566666654  4 6899999999988888764 21        1 1111110 111211 1 337


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+....          ....++.+.+.|+++|.++...
T Consensus       239 ~D~vid~~g----------~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          239 ASIAIDLVG----------TEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEEESSC----------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             ccEEEECCC----------ChHHHHHHHHHhhcCCEEEEeC
Confidence            999986542          1446788999999999998754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.89  E-value=0.026  Score=45.56  Aligned_cols=96  Identities=13%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CCCeEEEEe-CC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          57 NPKKVLIVG-GG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .+.+||.+| +| .|.++..+++.....++++++.+++-.+.+++. ..     + .-+.. ..|..+.+.. ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Ga-----d-~vi~~-~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GA-----H-HVIDH-SKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TC-----S-EEECT-TSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CC-----C-EEEeC-CCCHHHHHHHhcCCCceE
Confidence            457899998 43 466777777753337999999999988888763 21     0 00110 0133333332 2457999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+-...          ....++.+.+.|+++|.+++.
T Consensus       243 vid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            985431          145778999999999999876

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.79  E-value=0.19  Score=46.01  Aligned_cols=123  Identities=13%  Similarity=0.110  Sum_probs=79.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----------  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------  126 (197)
                      .+.+++|+.||.|+++..+...+-...+.++|+++...+..+.|++         ...++.+|+.++...          
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---------GSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---------CCccccccHHHHhhhccchhhhhhh
Confidence            3458999999999999887765311468899999999998888864         356778888765321          


Q ss_pred             -----cCCceeEEEECCCCCC-CCCcc------------cccHHHHHHHHhhcCCCcEEEEEcCCCC--cChhHHHHHHH
Q psy4592         127 -----HQQEFDVIITDSSDPV-GPAES------------LFQASYFELMSRALRPGGIVCSQAGTLW--YSLDCVGNTLQ  186 (197)
Q Consensus       127 -----~~~~~D~I~~~~~~~~-~~~~~------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~  186 (197)
                           ..+.+|+|+..+|... +....            |+ .+++ .+.+.++|.-+++=|+....  .....++.++.
T Consensus       610 ~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~-~~~~-riv~~~rPk~~llENV~glls~~~~~~~~~i~~  687 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLV-VSFL-SYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLR  687 (1002)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHH-HHHH-HHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHH
T ss_pred             hhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHH-HHHH-HHHHHhCCCEEEEeccHHHhccCcchHHHHHHH
Confidence                 1236899999988532 22111            11 1233 34566799877776663321  12345666666


Q ss_pred             HHHh
Q psy4592         187 HCAS  190 (197)
Q Consensus       187 ~~~~  190 (197)
                      .|.+
T Consensus       688 ~L~~  691 (1002)
T 3swr_A          688 CLVR  691 (1002)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.026  Score=45.09  Aligned_cols=98  Identities=16%  Similarity=0.090  Sum_probs=62.6

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhh-cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~-~~~~~  131 (197)
                      ..+++||.+|+  |.|..+..+++..+ .++++++.+++..+.+++. ..      ..-+.+. ..+..+.+.. ..+.+
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSI-GG------EVFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHHT-TC------CEEEETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHHc-CC------ceEEecCccHhHHHHHHHHhCCCC
Confidence            45689999998  35556666665544 5899999998888877653 11      1001111 1233333332 12379


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..          ....++.+.+.|+++|.++...
T Consensus       240 D~vi~~~g----------~~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          240 HGVINVSV----------SEAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEEECSS----------CHHHHHHHTTSEEEEEEEEECC
T ss_pred             CEEEECCC----------cHHHHHHHHHHHhcCCEEEEEe
Confidence            99997652          1457788999999999998764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.72  E-value=0.015  Score=46.52  Aligned_cols=91  Identities=14%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+.+.+||.+|+|. |.++..+++..+ .++++++.+++-.+.+++. ..        .. ++ .|... +   .+.+|+
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga--------~~-v~-~~~~~-~---~~~~D~  237 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM-GV--------KH-FY-TDPKQ-C---KEELDF  237 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT-TC--------SE-EE-SSGGG-C---CSCEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc-CC--------Ce-ec-CCHHH-H---hcCCCE
Confidence            35678999999865 666667777655 5899999999998988773 21        11 22 33211 1   237999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-....          ...++.+.+.|+++|.+++..
T Consensus       238 vid~~g~----------~~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          238 IISTIPT----------HYDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EEECCCS----------CCCHHHHHTTEEEEEEEEECC
T ss_pred             EEECCCc----------HHHHHHHHHHHhcCCEEEEEC
Confidence            9865421          113577889999999999865

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.71  E-value=0.02  Score=46.17  Aligned_cols=97  Identities=19%  Similarity=0.195  Sum_probs=63.7

Q ss_pred             CCCCeEEEEe--CCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVG--GGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG--~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      +.+++||.+|  .|.|..+..+++..+ .++++++.+++-.+.+++. ..      ..-+.....|..+.+.. ....+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga------~~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSL-GC------DRPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------SEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHc-CC------cEEEecCChhHHHHHHHhcCCCCC
Confidence            5668999999  456777777777655 5899999999888888763 21      10011111233333332 235799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....           ...++.+.+.|+++|.+++..
T Consensus       234 ~vid~~g-----------~~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          234 VVYESVG-----------GAMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEECSC-----------THHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCC-----------HHHHHHHHHHHhcCCEEEEEe
Confidence            9986552           136688899999999988764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.70  E-value=0.014  Score=46.65  Aligned_cols=98  Identities=18%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cC-Cc
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQ-QE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~  130 (197)
                      .++++||.+|+|  .|..+..+++.. + .++++++.+++..+.+++. ..      ..-+.....+..+.+.. .. +.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA-GA------DYVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh-CC------CEEecCCCccHHHHHHHHhcCCC
Confidence            466899999997  344555555554 4 6899999999988888653 11      10011111222222222 22 47


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+.+...          ...++.+.+.|+++|.+++..
T Consensus       241 ~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          241 VDAVIDLNNS----------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             EEEEEESCCC----------HHHHTTGGGGEEEEEEEEECC
T ss_pred             ceEEEECCCC----------HHHHHHHHHHHhcCCEEEEEC
Confidence            9999966521          346788889999999998754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.68  E-value=0.011  Score=46.99  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~  131 (197)
                      ..+++||.+|+  |.|..+..+++..+ .++++++.+++-++.+++. ..      ..-+.....|..+.+...  ...+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~~~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEY-GA------EYLINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------cEEEeCCCchHHHHHHHHhCCCCc
Confidence            45689999994  45556666666555 6899999999988888763 21      101111113333333321  3479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..           ...++.+.+.|+++|.+++..
T Consensus       219 D~vid~~g-----------~~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          219 DASFDSVG-----------KDTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             EEEEECCG-----------GGGHHHHHHHEEEEEEEEECC
T ss_pred             eEEEECCC-----------hHHHHHHHHHhccCCEEEEEc
Confidence            99986552           124678889999999998864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.67  E-value=0.018  Score=45.54  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +++++||.+|+  |.|..+..+++..+ .++++++.+++-++.+++.-.       ..-+.....|..+.+.. . ...+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKALGA-------WETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCC-------CEEEeCCCccHHHHHHHHhCCCCc
Confidence            45689999993  45666666666555 589999999998888876421       10111111233333332 2 3479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..           ...++.+.+.|+++|.+++..
T Consensus       211 Dvvid~~g-----------~~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVG-----------QDTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSC-----------GGGHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCC-----------hHHHHHHHHHhcCCCEEEEEe
Confidence            99986552           124578889999999999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.65  E-value=0.033  Score=44.43  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+++||.+|+  |.|..+..+++..+ .++++++.+++-.+.+++.-.       ..-+... .+..+.+.. . ...+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga-------~~v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSVGA-------DIVLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTC-------SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCC-------cEEecCc-hhHHHHHHHHhCCCCc
Confidence            56689999997  45666667777655 599999999988888887421       1111111 343333333 2 2379


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.....           ..++.+.+.|+++|.+++..
T Consensus       229 Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          229 DMVVDPIGG-----------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEEESCC-------------CHHHHHHTEEEEEEEEEC-
T ss_pred             eEEEECCch-----------hHHHHHHHhhcCCCEEEEEE
Confidence            999876531           13577889999999998754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.65  E-value=0.013  Score=46.90  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      .+.+||.+|+|. |..+..+++..+..++++++.+++-++.+++. ..      . -+.....|..+.+.. ....+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------~-v~~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------R-LVNPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------E-EECTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------h-ccCcCccCHHHHHHHhcCCCCCEE
Confidence            567999999853 55566666655533899999998887777653 21      0 011111233332322 24579999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....     .     ...++.+.+.|+++|.+++..
T Consensus       236 id~~g-----~-----~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          236 LEFSG-----N-----EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             EECSC-----C-----HHHHHHHHHHEEEEEEEEECC
T ss_pred             EECCC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence            86542     1     456788999999999988764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.56  E-value=0.019  Score=46.11  Aligned_cols=97  Identities=13%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +++++||..|+  |.|..+..+++..+ .++++++.+++-.+.+++. ..      ..-+.....+..+.+.. . ...+
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~~~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN-GA------HEVFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------SEEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHc-CC------CEEEeCCCchHHHHHHHHcCCCCc
Confidence            45689999997  44555555665544 6899999999888877653 11      00111111222222222 1 3479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..           ...++.+.+.|+++|.+++..
T Consensus       241 D~vi~~~G-----------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          241 DIIIEMLA-----------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EEEEESCH-----------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEEEECCC-----------hHHHHHHHHhccCCCEEEEEe
Confidence            99986652           235678889999999998754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.56  E-value=0.029  Score=45.00  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             CCC--CeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCc
Q psy4592          56 PNP--KKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQE  130 (197)
Q Consensus        56 ~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~  130 (197)
                      ..+  ++||..|+  |.|..+..+++..+..++++++.+++-.+.+++.+..      ...+.+...+..+.+.. ..+.
T Consensus       157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~------~~~~d~~~~~~~~~~~~~~~~~  230 (357)
T 2zb4_A          157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF------DAAINYKKDNVAEQLRESCPAG  230 (357)
T ss_dssp             CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC------SEEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC------ceEEecCchHHHHHHHHhcCCC
Confidence            456  79999997  3444555555554423899999999888877764321      10111111233333332 2237


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+++.+.-           ...++.+.+.|+++|.+++..
T Consensus       231 ~d~vi~~~G-----------~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          231 VDVYFDNVG-----------GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             EEEEEESCC-----------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCEEEECCC-----------HHHHHHHHHHhccCcEEEEEC
Confidence            999996652           246788899999999998754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.40  E-value=0.02  Score=45.66  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      ..+++||.+|+  |.|..+..+++..+ .++++++.+++-++.+++. ..     . .-+.....+..+.+.. . ...+
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-ga-----~-~~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL-GA-----D-ETVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC-----S-EEEETTSTTHHHHHHHHTTTTCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC-----C-EEEcCCcccHHHHHHHHhCCCCc
Confidence            45689999998  56666667776555 5899999999988888753 21     1 0011111232232322 1 2479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+.+..     .      ..++.+.+.|+++|.+++..
T Consensus       237 d~vi~~~g-----~------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          237 DKVVDHTG-----A------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             EEEEESSC-----S------SSHHHHHHHEEEEEEEEESS
T ss_pred             eEEEECCC-----H------HHHHHHHHhhccCCEEEEEe
Confidence            99997653     1      13477888999999988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.29  E-value=0.036  Score=44.44  Aligned_cols=97  Identities=22%  Similarity=0.244  Sum_probs=62.0

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      +.+++||.+|+  |.|..+..+++..+ .++++++.+++-.+.+++.-.       ..-+.....|..+.+.. ....+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKCEACERLGA-------KRGINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCC-------CEEEeCCchHHHHHHHHHhCCCce
Confidence            45679999953  34666666666655 689999999998888877421       10111111233332222 245799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+.+..     .      ..++.+.+.|+++|.+++..
T Consensus       238 vvid~~g-----~------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          238 IILDMIG-----A------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             EEEESCC-----G------GGHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCC-----H------HHHHHHHHHhccCCEEEEEE
Confidence            9986653     1      14577889999999988764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.28  E-value=0.15  Score=41.08  Aligned_cols=101  Identities=20%  Similarity=0.290  Sum_probs=58.7

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|+.+|+|.=+ ....+++..+ .+|+++|.+++-++.+++....        .+.....+..++ ...-..+|+|+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~G-a~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~DvVI  235 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS--------RVELLYSNSAEI-ETAVAEADLLI  235 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHH-HHHHHTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHH-HHHHcCCCEEE
Confidence            34799999985322 2233444445 4899999999888877665421        222232222221 11113589998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .....+....+.+..    +...+.|+|+|+++...
T Consensus       236 ~~~~~~~~~~~~li~----~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          236 GAVLVPGRRAPILVP----ASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             ECCCCTTSSCCCCBC----HHHHTTSCTTCEEEETT
T ss_pred             ECCCcCCCCCCeecC----HHHHhhCCCCCEEEEEe
Confidence            766543322233322    44567889999888755

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.24  E-value=0.15  Score=41.01  Aligned_cols=95  Identities=20%  Similarity=0.115  Sum_probs=58.8

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+||.+|+|. |..+..+++..+ .++++++.+++-.+.+++.+..        ..-+-..+ .+.+....+.+|+|+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~lGa--------~~v~~~~~-~~~~~~~~~~~D~vi  256 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGA--------DSFLVSRD-QEQMQAAAGTLDGII  256 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHTSCC--------SEEEETTC-HHHHHHTTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcCC--------ceEEeccC-HHHHHHhhCCCCEEE
Confidence            668999999753 444555666555 5899999999888877754431        11111122 122333235799998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ......    .      .++.+.+.|+++|.++...
T Consensus       257 d~~g~~----~------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          257 DTVSAV----H------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             ECCSSC----C------CSHHHHHHEEEEEEEEECC
T ss_pred             ECCCcH----H------HHHHHHHHHhcCCEEEEEc
Confidence            665311    1      1256678899999988764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.19  E-value=0.071  Score=42.67  Aligned_cols=109  Identities=11%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-------C----------CCCCCCeEEEEcc
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-------V----------GLSDPRLTVHVGD  119 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-------~----------~~~~~~~~~~~~d  119 (197)
                      ....|+.+|||.......+....+...++-||. |++++.-++.++...       .          .+..++..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            346999999999998888775433344444444 888876666543210       0          0012578999999


Q ss_pred             hHHH--H----hhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         120 GFRF--M----SEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       120 ~~~~--~----~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +++.  +    ...  .....++++-....+.+...  ...+++.+.+.. |+|.+++
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~--~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE--SQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH--HHHHHHHHHHHC-SSEEEEE
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH--HHHHHHHHHhhC-CCcEEEE
Confidence            8852  2    221  23456788777665554432  256788888777 7777653

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.15  E-value=0.084  Score=42.09  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      +.+.+||.+|+  |.|..+..+++..+ .+++++ .+++-++.+++.- .      . .+. ...|..+.+..  ....+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~~~~~~~~lG-a------~-~i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGSDLEYVRDLG-A------T-PID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHHHHHHHHHHT-S------E-EEE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHHHHHHHHHcC-C------C-Eec-cCCCHHHHHHHHhcCCCc
Confidence            56689999994  35666667777655 589898 8888888887642 1      1 122 22233333332  23479


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-...           ...++.+.+.|+++|.++...
T Consensus       218 D~vid~~g-----------~~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          218 DLVYDTLG-----------GPVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEESSC-----------THHHHHHHHHEEEEEEEEESC
T ss_pred             eEEEECCC-----------cHHHHHHHHHHhcCCeEEEEc
Confidence            99986542           136688889999999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.12  E-value=0.11  Score=42.29  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC--CCe-EEEE--cc-----hHHHHh
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--PRL-TVHV--GD-----GFRFMS  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~--~~~-~~~~--~d-----~~~~~~  125 (197)
                      ++.+|+.+|+|.=+ .+..+++..+ .+|+++|.+++..+.+++.-.... .++.  ... .+..  .+     -.+.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~lGa~~~-~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRSVGAQWL-DLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHHTTCEEC-CCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEE-eccccccccccchhhhhHHHHhhhHHHHH
Confidence            46799999998533 3333444444 689999999988887766211000 0000  000 0000  00     011122


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ..-..+|+|+.....+....+.+.+    +++.+.+|||++++=.
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt----~emv~~MkpGsVIVDv  301 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVT----AAAATGMQPGSVVVDL  301 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBC----HHHHHTSCTTCEEEET
T ss_pred             HHHhcCCEEEECCCCCCcccceeec----HHHHhcCCCCcEEEEE
Confidence            2235799999765444433445555    4556678888777654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.12  E-value=0.026  Score=46.45  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHh-cCCC-CccEEEEEcCHHHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVL-KHPS-VESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~-~~~~-~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      +++..|+|+|++.|..+..++ +..+ ..+|+++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            456799999999999998877 4333 37999999999999999887653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.05  E-value=0.49  Score=44.52  Aligned_cols=122  Identities=14%  Similarity=0.120  Sum_probs=77.8

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----------
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----------  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------  126 (197)
                      ..+++|+.||.|++...+...+-...+.++|+++...+..+.|++         ...++.+|+.+....           
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~gdi~~~~~  921 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP---------GTTVFTEDCNVLLKLVMAGEVTNSLG  921 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHTTTCSBCSSC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---------CCcEeeccHHHHhHhhhccchhhhhh
Confidence            458999999999999888766421468899999999998888864         345777887765421           


Q ss_pred             ----cCCceeEEEECCCCCC-CCCcc------------cccHHHHHHHHhhcCCCcEEEEEcCCCC--cChhHHHHHHHH
Q psy4592         127 ----HQQEFDVIITDSSDPV-GPAES------------LFQASYFELMSRALRPGGIVCSQAGTLW--YSLDCVGNTLQH  187 (197)
Q Consensus       127 ----~~~~~D~I~~~~~~~~-~~~~~------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~  187 (197)
                          ..+.+|+|+..+|... +....            |+ .+++ .+.+.++|.-+++=|+....  .....++.++..
T Consensus       922 ~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~-~~~l-riv~~~rPk~fv~ENV~glls~~~g~~~~~il~~  999 (1330)
T 3av4_A          922 QRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLV-VSFL-SYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRC  999 (1330)
T ss_dssp             CBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHH-HHHH-HHHHHHCCSEEEEEEEGGGGTTTTTHHHHHHHHH
T ss_pred             hhccccCccceEEecCCCcccccccccccccccchhhHHH-HHHH-HHHHHhcCcEEEEeccHHHhccCccHHHHHHHHH
Confidence                0136899999988633 22111            11 1233 34456799876666653321  123355666665


Q ss_pred             HHh
Q psy4592         188 CAS  190 (197)
Q Consensus       188 ~~~  190 (197)
                      |..
T Consensus      1000 L~~ 1002 (1330)
T 3av4_A         1000 LVR 1002 (1330)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.96  E-value=0.23  Score=34.04  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CCeEEEEeCCchH-hH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCcee
Q psy4592          58 PKKVLIVGGGDGG-VA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~-~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D  132 (197)
                      ..+|+.+|+|.=+ .. ..+.+. + ..++++|.+++.++.+++.           .+.++.+|+.+.  +.. ....+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g-~~v~vid~~~~~~~~~~~~-----------g~~~i~gd~~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-D-IPLVVIETSRTRVDELRER-----------GVRAVLGNAANEEIMQLAHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHT-----------TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHc-----------CCCEEECCCCCHHHHHhcCcccCC
Confidence            3589999997532 22 223333 3 6999999999988877651           356777876532  332 235789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|++..+.     ..  ....+-...+.+.|+..++.....
T Consensus        74 ~vi~~~~~-----~~--~n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           74 WLILTIPN-----GY--EAGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             EEEECCSC-----HH--HHHHHHHHHHHHCSSSEEEEEESS
T ss_pred             EEEEECCC-----hH--HHHHHHHHHHHHCCCCeEEEEECC
Confidence            99977642     11  012234456677888888775543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.96  E-value=0.11  Score=41.56  Aligned_cols=95  Identities=19%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.+||.+|+|. |.++..+++..+ .++++++.+++-.+.+++.+..       +.+ +...+ .+.+....+.+|+|+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~lGa-------~~v-i~~~~-~~~~~~~~~g~D~vi  249 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGA-------DDY-VIGSD-QAKMSELADSLDYVI  249 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTTSCC-------SCE-EETTC-HHHHHHSTTTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHcCC-------cee-ecccc-HHHHHHhcCCCCEEE
Confidence            668999999753 444555666545 5899999999888887744431       111 11122 122333235799998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      -.....    .      .++.+.+.|+++|.++...
T Consensus       250 d~~g~~----~------~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          250 DTVPVH----H------ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             ECCCSC----C------CSHHHHTTEEEEEEEEECS
T ss_pred             ECCCCh----H------HHHHHHHHhccCCEEEEeC
Confidence            654211    1      2366778999999998764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.95  E-value=0.11  Score=41.94  Aligned_cols=97  Identities=13%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      ..+.+||.+|++  .|.++..+++..+ .+++++ .+++-.+.+++.- .      ..-+.....|..+.+.. ..+.+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G-a~Vi~~-~~~~~~~~~~~lG-a------~~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG-YIPIAT-CSPHNFDLAKSRG-A------EEVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEE-ECGGGHHHHHHTT-C------SEEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEE-eCHHHHHHHHHcC-C------cEEEECCCchHHHHHHHHccCCcc
Confidence            456799999983  6777777887655 577777 4888888887641 1      11122222344443333 344699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhc-CCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRAL-RPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~L-kpgG~l~~~~  171 (197)
                      +|+-..-     .     ...++.+.+.| +++|.++...
T Consensus       234 ~v~d~~g-----~-----~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          234 YALDCIT-----N-----VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEEESSC-----S-----HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEEECCC-----c-----hHHHHHHHHHhhcCCCEEEEEe
Confidence            9985442     1     45678888899 6999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.94  E-value=0.039  Score=43.42  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+.+.+||.+|+|. |.++..+++..+ .++++++ +++-.+.+++. ..         -.++ .| .+.+   ...+|+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~-~~~~~~~~~~l-Ga---------~~v~-~d-~~~v---~~g~Dv  202 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAG-YVVDLVS-ASLSQALAAKR-GV---------RHLY-RE-PSQV---TQKYFA  202 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHT-CEEEEEC-SSCCHHHHHHH-TE---------EEEE-SS-GGGC---CSCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEE-ChhhHHHHHHc-CC---------CEEE-cC-HHHh---CCCccE
Confidence            35678999999953 566677777655 5999999 88888888774 11         1112 24 2212   467999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-....           ..+..+.+.|+++|.++...
T Consensus       203 v~d~~g~-----------~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          203 IFDAVNS-----------QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EECC------------------TTGGGEEEEEEEEEEC
T ss_pred             EEECCCc-----------hhHHHHHHHhcCCCEEEEEe
Confidence            9854321           12255678999999988764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.92  E-value=0.037  Score=43.89  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+++||..|+  |.|.....+++..+ .++++++.+++-.+.+++. ..      ..-+.....+..+.+.. . ...+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL-GC------HHTINYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------CEEEECCCHHHHHHHHHHhCCCCC
Confidence            45679999995  56666666666555 6899999999888887663 21      10011111222222222 1 3469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+...           ..++.+.+.|+++|.++...
T Consensus       216 d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          216 DVVYDSIGK-----------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEECSCT-----------TTHHHHHHTEEEEEEEEECC
T ss_pred             eEEEECCcH-----------HHHHHHHHhhccCCEEEEEe
Confidence            999966531           14578889999999988764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.92  E-value=0.076  Score=42.35  Aligned_cols=96  Identities=19%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             CCCeEEEEe-CC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          57 NPKKVLIVG-GG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .+.+||.+| +| .|.++..+++..+ .++++++.+++-.+.+++.-.      + .-+.. ..|..+.+.. ....+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa------~-~vi~~-~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASRNETIEWTKKMGA------D-IVLNH-KESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCSHHHHHHHHHHTC------S-EEECT-TSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCC------c-EEEEC-CccHHHHHHHhCCCCccE
Confidence            567999995 33 4556666776655 599999999998888887421      0 00100 0133333322 2457999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....          ....++.+.+.|+++|.++...
T Consensus       221 v~d~~g----------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          221 VFCTFN----------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEESSC----------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             EEECCC----------chHHHHHHHHHhccCCEEEEEC
Confidence            986441          1456788999999999997653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.91  E-value=0.054  Score=43.39  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+++||..|+  |.|..+..+++..+ .++++++.+++-++.+++. ..      ..-+.....+..+.+.. . ...+
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQMAEKL-GA------AAGFNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------cEEEecCChHHHHHHHHHhcCCCc
Confidence            45679999984  45555555665544 6899999999888888553 21      00011111222232322 1 2469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+...           ..++.+.+.|+++|.+++..
T Consensus       233 d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          233 NLILDCIGG-----------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEEESSCG-----------GGHHHHHHHEEEEEEEEECC
T ss_pred             eEEEECCCc-----------hHHHHHHHhccCCCEEEEEe
Confidence            999876531           13577789999999998864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.84  E-value=0.027  Score=44.57  Aligned_cols=97  Identities=13%  Similarity=0.057  Sum_probs=60.3

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+++||..|+  |.|.....+++..+ .++++++.+++..+.+++. ..      ..-+.....+..+.+.. . ...+
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~  210 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GA------WQVINYREEDLVERLKEITGGKKV  210 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEEECCCccHHHHHHHHhCCCCc
Confidence            45689999994  44555555555444 5899999999888888763 21      00011111222222222 1 3469


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++.+..           ...++.+.+.|+++|.+++..
T Consensus       211 D~vi~~~g-----------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          211 RVVYDSVG-----------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             EEEEECSC-----------GGGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEECCc-----------hHHHHHHHHHhcCCCEEEEEe
Confidence            99997652           124578889999999998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.77  E-value=0.6  Score=39.13  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC--------CCCeEEEEcchHHHHh
Q psy4592          57 NPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS--------DPRLTVHVGDGFRFMS  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~--------~~~~~~~~~d~~~~~~  125 (197)
                      ...+|..||+|.-+..  ..+++.+  .+|+++|++++.++..++...... .++.        ..++.+ ..|..+.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~~   83 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAVA   83 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHhh
Confidence            4579999999964443  3344443  589999999999888776421110 0000        112332 345443333


Q ss_pred             hcCCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                          ..|+|+...+.+...+  +.+ ...+.++.+...|+++..++..+
T Consensus        84 ----~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           84 ----HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ----HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ----cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence                3799999876543211  111 12567778888999877665543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.72  E-value=0.018  Score=46.27  Aligned_cols=97  Identities=24%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH-HHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF-RFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~D~  133 (197)
                      ..+.+||.+|+|. |.++..+++..+ .++++++.+++-++.+++. ..        . .++..+-. ++...-.+.+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~G-a~Vi~~~~~~~~~~~~~~l-Ga--------~-~v~~~~~~~~~~~~~~~~~D~  246 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKM-GA--------D-HYIATLEEGDWGEKYFDTFDL  246 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TC--------S-EEEEGGGTSCHHHHSCSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CC--------C-EEEcCcCchHHHHHhhcCCCE
Confidence            4568999999853 556666666555 5799999999888888763 21        1 11211111 122221247999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+.......   .     ..++.+.+.|+++|.++...
T Consensus       247 vid~~g~~~---~-----~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          247 IVVCASSLT---D-----IDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEECCSCST---T-----CCTTTGGGGEEEEEEEEECC
T ss_pred             EEECCCCCc---H-----HHHHHHHHHhcCCCEEEEec
Confidence            986653200   0     12255678999999988753

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=94.72  E-value=0.021  Score=44.45  Aligned_cols=67  Identities=15%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             CCceeEEEECCCCCCCCCc-cc-cc-----HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         128 QQEFDVIITDSSDPVGPAE-SL-FQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~-~l-~~-----~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      .++||+|++|+.-+..... +. .+     .-.++.+.++|+|||.|++-....  .....+.+...+++.|..|+
T Consensus       204 ~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygg--aDr~se~lv~~LaR~F~~Vr  277 (320)
T 2hwk_A          204 VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGY--ADRASESIIGAIARQFKFSR  277 (320)
T ss_dssp             SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCC--CSHHHHHHHHHHHTTEEEEE
T ss_pred             cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecC--CcccHHHHHHHHHHhcceee
Confidence            3679999999876554333 20 00     115667789999999999865331  12255777888888887775

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.66  E-value=0.029  Score=44.58  Aligned_cols=46  Identities=15%  Similarity=0.155  Sum_probs=38.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCH---HHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN---RVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~  103 (197)
                      .++..|||.-||+|..+.++.+..  .+.+++|+++   ..++.+++++..
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHH
Confidence            566799999999999988877664  5899999999   999999998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.61  E-value=0.097  Score=43.29  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc--------------
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD--------------  119 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d--------------  119 (197)
                      ..+++||.+|+  |.|..+..+++..+ .++++++.+++-++.+++. ..      ..-+.....|              
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRAL-GC------DLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------CCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC------CEEEecccccccccccccccccch
Confidence            55689999997  34556666666655 6888889999988888663 21      1111111111              


Q ss_pred             -----hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         120 -----GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       120 -----~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                           ...........+|+|+....           ...++.+.+.|+++|.+++..
T Consensus       291 ~~~~~~~~v~~~~g~g~Dvvid~~G-----------~~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKAGREPDIVFEHTG-----------RVTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHSSCCSEEEECSC-----------HHHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHhCCCceEEEECCC-----------chHHHHHHHHHhcCCEEEEEe
Confidence                 11111112457999986542           235688889999999998864

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.56  E-value=0.16  Score=40.09  Aligned_cols=113  Identities=13%  Similarity=0.104  Sum_probs=71.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCce---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEF---  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~---  131 (197)
                      ....|++||||.=.....+.. .....++-|| .|.+++..++.+...+ .....+..++.+|+++.+...  ...|   
T Consensus       102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~-~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHG-VTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTT-CCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcC-CCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            346899999998766555442 2236777777 4999988888764211 112457888999987522111  1112   


Q ss_pred             --eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         132 --DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       132 --D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                        =++++....++.+...  ...+++.+.+.+.||+.+++....+
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~--~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATA--QDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             SCEEEEECSCGGGSCHHH--HHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CCEEEEEechHhhCCHHH--HHHHHHHHHHhCCCCeEEEEEecCC
Confidence              2555555555544332  2678899999999999999876544

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.24  E-value=0.083  Score=41.23  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch-HHHHhhcCCce
Q psy4592          55 HPNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG-FRFMSEHQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~  131 (197)
                      .+.+++||.+|+  |.|..+..+++..+ .++++++.+++-.+.+++. ..        . .++..+- .++... -..+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga--------~-~~~~~~~~~~~~~~-~~~~  190 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLAL-GA--------E-EAATYAEVPERAKA-WGGL  190 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHT-TC--------S-EEEEGGGHHHHHHH-TTSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC--------C-EEEECCcchhHHHH-hcCc
Confidence            356689999997  44566666666655 5899999999888888652 21        1 1222111 222222 2579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+. ...           ..++.+.+.|+++|.++...
T Consensus       191 d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          191 DLVLE-VRG-----------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC-
T ss_pred             eEEEE-CCH-----------HHHHHHHHhhccCCEEEEEe
Confidence            99996 421           13578889999999988754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.95  E-value=0.46  Score=38.90  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKK   99 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~   99 (197)
                      .+.+|+.+|+|.=+ .+..+++..+ ..|+++|.+++..+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHH
Confidence            36799999997533 2333444455 589999999988777654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.92  E-value=0.79  Score=38.08  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             CeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC--------CCCeEEEEcchHHHHhhc
Q psy4592          59 KKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS--------DPRLTVHVGDGFRFMSEH  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~--------~~~~~~~~~d~~~~~~~~  127 (197)
                      .+|..||+|.=+...+  +++.+  .+|+++|.+++.++..++...... .++.        ..++++ ..|..+.+   
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV---   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence            4788999885443333  33342  689999999998887766322110 0000        123433 34544433   


Q ss_pred             CCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         128 QQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...|+|+...+.+...+  +.+ .-.+.++.+.+.|++|-.++..+
T Consensus        77 -~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 -PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             -GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             -hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence             34799999876543211  111 12566778888898877666544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.82  E-value=0.51  Score=38.23  Aligned_cols=98  Identities=17%  Similarity=0.312  Sum_probs=57.7

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc---chHHHHhhcCCcee
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG---DGFRFMSEHQQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~D  132 (197)
                      .+++|+.+|+|.=+ ....+++..+ .+|+++|.+++-++.+++.+..        .+.....   +..+.+    ..+|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G-a~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l----~~aD  233 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG-ATVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAV----KRAD  233 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHH----cCCC
Confidence            46799999985322 2222333444 5899999999888777765431        1222222   222222    3589


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+.....+....+.+..    +.+.+.|||||+++..+
T Consensus       234 vVi~~~~~p~~~t~~li~----~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          234 LVIGAVLVPGAKAPKLVS----NSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             EEEECCCCTTSCCCCCBC----HHHHTTSCTTCEEEEGG
T ss_pred             EEEECCCcCCCCCcceec----HHHHhcCCCCcEEEEEe
Confidence            999865433322223332    45667889999887654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.79  E-value=0.33  Score=39.84  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------CCCeE-EEE--cch-----H
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------DPRLT-VHV--GDG-----F  121 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------~~~~~-~~~--~d~-----~  121 (197)
                      .+.+|+.+|+|.=+ .+..+++..+ ..|+++|.++...+.+++.-.... ...      ..... +..  .+-     .
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~~G~~~~-~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG-AVVSATDVRPAAKEQVASLGAKFI-AVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSTTHHHHHHHTTCEEC-CCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHcCCcee-ecccccccccccccchhhhcchhhhhhhH
Confidence            45799999998533 3333445444 689999999988887776311000 000      00000 110  000     0


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..+...-...|+|+.....+....+.+.+    +++.+.+|||.+++=.+
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt----~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVT----REMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBC----HHHHTTSCTTCEEEETT
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEec----HHHHhcCCCCCEEEEEe
Confidence            11222124689999875544444555655    45666888888777544

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=93.73  E-value=0.16  Score=40.56  Aligned_cols=95  Identities=12%  Similarity=0.042  Sum_probs=55.3

Q ss_pred             CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      +.+.+||..|++  .|.++..+++..+...+++++ +++-.+.++  +..      ..-+. ...|..+.+.. ..+.+|
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga------~~~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSV------THLFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGS------SEEEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCC------cEEEc-CCccHHHHHHHhcCCCce
Confidence            566899999983  456666777765556888887 555556665  221      11111 12233333332 345799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-...           ...++.+.+.|+++|.+++..
T Consensus       211 vv~d~~g-----------~~~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          211 IVLDCLC-----------GDNTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEECC------------------CTTEEEEEEEEEEC
T ss_pred             EEEECCC-----------chhHHHHHHHhhcCCEEEEEC
Confidence            9986542           112366789999999999765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.66  E-value=0.4  Score=38.89  Aligned_cols=109  Identities=22%  Similarity=0.288  Sum_probs=55.8

Q ss_pred             CCCeEEEEeCCchHh-HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC----------eEEEEcc----hH
Q psy4592          57 NPKKVLIVGGGDGGV-AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR----------LTVHVGD----GF  121 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~d----~~  121 (197)
                      .+.+|+.+|+|.=+. +..+++..+ .+|+++|.++...+.+++ +.......+...          .+....|    ..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHH-TTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            467999999975333 333444455 579999999887776665 321000000000          0000000    01


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.+......+|+|+.....+..+.+.+.+    ++..+.|||||+++-..
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~----~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLIT----EEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSC----HHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeC----HHHHhcCCCCCEEEEEe
Confidence            11222224589999765333322333333    44566789999887654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.59  E-value=0.061  Score=43.26  Aligned_cols=93  Identities=17%  Similarity=0.234  Sum_probs=57.4

Q ss_pred             CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH---HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN---RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +++||.+|+|. |..+..+++..+ .++++++.++   +-.+.+++. ..       +.+. .. |..+.+......+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~~~-ga-------~~v~-~~-~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYG-LEVWMANRREPTEVEQTVIEET-KT-------NYYN-SS-NGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHT-CEEEEEESSCCCHHHHHHHHHH-TC-------EEEE-CT-TCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCccchHHHHHHHHh-CC-------ceec-hH-HHHHHHHHhCCCCCE
Confidence            78999999832 334444555444 5899999988   777777653 11       1111 11 222222211257999


Q ss_pred             EEECCCCCCCCCcccccHHHH-HHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYF-ELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~-~~~~~~LkpgG~l~~~~  171 (197)
                      |+.....          ...+ +.+.+.|+++|.+++..
T Consensus       250 vid~~g~----------~~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA----------DVNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC----------CTHHHHHHGGGEEEEEEEEECS
T ss_pred             EEECCCC----------hHHHHHHHHHHHhcCCEEEEEe
Confidence            9876531          1245 78899999999988764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.54  E-value=0.11  Score=43.18  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE----EcchH------HH
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH----VGDGF------RF  123 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~d~~------~~  123 (197)
                      +.+.+||.+|+  |.|.++..+++..+ .++++++.+++-++.+++.-...--.....+..+.    ..|..      +.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~  305 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKR  305 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHH
Confidence            45679999997  35666667777655 68888889999889887642100000000011000    00110      11


Q ss_pred             Hhh-c-CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         124 MSE-H-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       124 ~~~-~-~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.. . ...+|+|+-...           ...++.+.+.|+++|.+++..
T Consensus       306 i~~~t~g~g~Dvvid~~G-----------~~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          306 IRELTGGEDIDIVFEHPG-----------RETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHTSCCEEEEEECSC-----------HHHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHhCCCCCcEEEEcCC-----------chhHHHHHHHhhCCcEEEEEe
Confidence            222 2 357999985442           346788899999999999864

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.52  E-value=0.21  Score=41.04  Aligned_cols=45  Identities=16%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCC-Ccc----EEEEEcCHHHHHHHHhhcCC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPS-VES----AYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~-~~~----v~~ve~~~~~~~~a~~~~~~  103 (197)
                      .+|+|+.||.|+....+.+.+. ...    +.++|+++...+..+.+++.
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            5999999999999888776531 123    78899999999988888763

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=93.42  E-value=0.1  Score=46.41  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCC-----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPS-----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      ..+|+|+-||.|+++.-+.+.+.     ...+.++|+++.+++.-+.|++         ...+.+.|+.+.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---------~~~~~~~di~~i  273 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---------QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---------TSEEEESCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---------CCceecCcHHHh
Confidence            35899999999998877665421     2467899999999999999874         345666666543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.42  E-value=0.094  Score=41.29  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             eEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEE
Q psy4592          60 KVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~  136 (197)
                      +||.+|+  |.|.++..+++..+ .++++++.+++-.+.+++. ..        ..-+-..+... ... ..+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga--------~~vi~~~~~~~-~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG-YQVAAVSGRESTHGYLKSL-GA--------NRILSRDEFAE-SRPLEKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGGGHHHHHHH-TC--------SEEEEGGGSSC-CCSSCCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC--------CEEEecCCHHH-HHhhcCCCccEEEE
Confidence            5999997  45667777777665 5999999999999988774 11        11111111000 111 2357998875


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...           ...++.+.+.|+++|.++...
T Consensus       218 ~~g-----------~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          218 TVG-----------DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             SSC-----------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCC-----------cHHHHHHHHHHhcCCEEEEEe
Confidence            431           337788999999999998864

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=93.41  E-value=0.044  Score=42.22  Aligned_cols=70  Identities=14%  Similarity=0.141  Sum_probs=45.7

Q ss_pred             hhcCCceeEEEECCCCCCCCCc-cccc------HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         125 SEHQQEFDVIITDSSDPVGPAE-SLFQ------ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       125 ~~~~~~~D~I~~~~~~~~~~~~-~l~~------~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      +...++||+|++|...+..... +...      ..+-..+.+.|+|||.+++....  +-...-+.+...+.+.|..++
T Consensus       206 P~~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYG--yADR~SE~vV~alARkF~~~r  282 (324)
T 3trk_A          206 PATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYG--YADRTSERVICVLGRKFRSSR  282 (324)
T ss_dssp             CGGGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECC--CCSHHHHHHHHHHHTTEEEEE
T ss_pred             CCcCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeec--ccccchHHHHHHHHhhheeee
Confidence            3334799999999876554221 1110      22344667999999999987643  334555677788888777665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.18  E-value=0.79  Score=36.08  Aligned_cols=91  Identities=16%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CCeEEEEeCCch--HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH-HHhhcCCceeEE
Q psy4592          58 PKKVLIVGGGDG--GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR-FMSEHQQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~G--~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~D~I  134 (197)
                      .++|..||+|.=  .++..+.+.+...+|+++|.+++.++.+++. ..         +.-...|..+ .+    ...|+|
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~---------~~~~~~~~~~~~~----~~aDvV   98 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI---------IDEGTTSIAKVED----FSPDFV   98 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS---------CSEEESCTTGGGG----GCCSEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CC---------cchhcCCHHHHhh----ccCCEE
Confidence            368999998852  3444444443223899999999888777653 10         1112234332 22    358999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +...+..     .  ..+.++++...|+++..++-
T Consensus        99 ilavp~~-----~--~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           99 MLSSPVR-----T--FREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             EECSCGG-----G--HHHHHHHHHHHSCTTCEEEE
T ss_pred             EEeCCHH-----H--HHHHHHHHhhccCCCcEEEE
Confidence            9877521     1  26788889999999876654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.09  E-value=0.68  Score=33.00  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhhc--CCc
Q psy4592          58 PKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSEH--QQE  130 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~--~~~  130 (197)
                      ..+|+.+|+|.  ++..++   .......++++|.+++.++.+++.           ...++.+|..+  .+...  ...
T Consensus        39 ~~~v~IiG~G~--~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~~l~~~~~~~~  105 (183)
T 3c85_A           39 HAQVLILGMGR--IGTGAYDELRARYGKISLGIEIREEAAQQHRSE-----------GRNVISGDATDPDFWERILDTGH  105 (183)
T ss_dssp             TCSEEEECCSH--HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred             CCcEEEECCCH--HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHHHHHhccCCCC
Confidence            45899999874  333322   222026899999999887766542           23455566532  23322  457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|+|+...+.     ..  ....+-...+.+.|++.++.....
T Consensus       106 ad~vi~~~~~-----~~--~~~~~~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          106 VKLVLLAMPH-----HQ--GNQTALEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             CCEEEECCSS-----HH--HHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCEEEEeCCC-----hH--HHHHHHHHHHHHCCCCEEEEEECC
Confidence            8999986532     11  012223355667788888876543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.08  E-value=0.66  Score=37.37  Aligned_cols=99  Identities=18%  Similarity=0.326  Sum_probs=55.6

Q ss_pred             CCCeEEEEeCCchHhHHH---HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVARE---VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~---l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|+.+|+|  .++..   +++..+ .+|+++|.+++-++.+++.+..        .+.....+..+ +...-..+|+
T Consensus       165 ~~~~V~ViGaG--~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~g~--------~~~~~~~~~~~-l~~~~~~~Dv  232 (369)
T 2eez_A          165 APASVVILGGG--TVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVFGG--------RVITLTATEAN-IKKSVQHADL  232 (369)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SEEEEECCHHH-HHHHHHHCSE
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcCc--------eEEEecCCHHH-HHHHHhCCCE
Confidence            35799999985  34433   333344 5899999999887777654321        23333233222 1111235899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+.....+....+.+..    +.+.+.|++||.++..+
T Consensus       233 Vi~~~g~~~~~~~~li~----~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          233 LIGAVLVPGAKAPKLVT----RDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             EEECCC-------CCSC----HHHHTTSCTTCEEEECC
T ss_pred             EEECCCCCccccchhHH----HHHHHhhcCCCEEEEEe
Confidence            99877543211222222    55667889999877654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.06  E-value=0.56  Score=37.94  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+||.++.+.|.++..++..    .++.+.-|--.....+.|+..  +++....+++...     +......||+|+.
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~--~~~~~~~~~~~~~-----~~~~~~~~~~v~~  106 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRL--NGIDESSVKFLDS-----TADYPQQPGVVLI  106 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHH--TTCCGGGSEEEET-----TSCCCSSCSEEEE
T ss_pred             CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHH--cCCCccceEeccc-----ccccccCCCEEEE
Confidence            3468999999999999887643    334554333333345555543  2223334565433     2233568999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ..|.+..    . -...+..+...|++|+.+++....    ........+.+.+.++.
T Consensus       107 ~lpk~~~----~-l~~~L~~l~~~l~~~~~i~~~g~~----~~~~~~~~~~l~~~~~~  155 (375)
T 4dcm_A          107 KVPKTLA----L-LEQQLRALRKVVTSDTRIIAGAKA----RDIHTSTLELFEKVLGP  155 (375)
T ss_dssp             ECCSCHH----H-HHHHHHHHHTTCCTTSEEEEEEEG----GGCCHHHHHHHHHHTCC
T ss_pred             EcCCCHH----H-HHHHHHHHHhhCCCCCEEEEEecc----cchHHHHHHHHHhhcCc
Confidence            7763221    1 155778899999999998775432    22224445555554443

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.06  E-value=0.23  Score=40.00  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=58.1

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+.+||.+|+  |.|..+..+++..+ .++++++ +++-.+.+++. ..      ..-+.....|..+.+.. ...+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga------~~v~~~~~~~~~~~~~~-~~g~D~  251 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVC-SQDASELVRKL-GA------DDVIDYKSGSVEEQLKS-LKPFDF  251 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TC------SEEEETTSSCHHHHHHT-SCCBSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEe-ChHHHHHHHHc-CC------CEEEECCchHHHHHHhh-cCCCCE
Confidence            45689999993  45666666776655 5888888 67777777553 11      10111111233332332 246999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+.....     .    ...++.+.+.|+++|.++...
T Consensus       252 vid~~g~-----~----~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          252 ILDNVGG-----S----TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEESSCT-----T----HHHHGGGGBCSSSCCEEEESC
T ss_pred             EEECCCC-----h----hhhhHHHHHhhcCCcEEEEeC
Confidence            9865421     1    124466778999999998754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.02  E-value=0.76  Score=36.92  Aligned_cols=100  Identities=10%  Similarity=0.023  Sum_probs=60.7

Q ss_pred             CCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCC-CCCeEEEEcchHHHHhhcCCcee
Q psy4592          58 PKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLS-DPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~-~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ..+|..||+|.-+.+..  +++.+  ..|+.++.+++.++..++.-....  .+.. .+++.+ ..|..+.+    ...|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----~~aD  101 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG--QKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----EGVT  101 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----TTCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----hcCC
Confidence            46899999986554433  33332  589999999988877665421100  0001 123443 35654443    3479


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+...+..       ...+.++++...++|+..++...
T Consensus       102 vVilaVp~~-------~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          102 DILIVVPSF-------AFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             EEEECCCHH-------HHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEECCCHH-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence            999877421       12678888888998887665443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.00  E-value=0.99  Score=37.47  Aligned_cols=107  Identities=16%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             CCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC--------CCCeEEEEcchHHHHhh
Q psy4592          58 PKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS--------DPRLTVHVGDGFRFMSE  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~--------~~~~~~~~~d~~~~~~~  126 (197)
                      .-++-.||+|.-+...+  +++.+  .+|+++|++++.++..++...... .++.        ..++++ ..|..+.+  
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~--   82 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV--   82 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH--
Confidence            45888999986554433  33442  689999999998887765321100 0000        113333 35554433  


Q ss_pred             cCCceeEEEECCCCCCCC---Cccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 HQQEFDVIITDSSDPVGP---AESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 ~~~~~D~I~~~~~~~~~~---~~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        ...|+|+...+.+...   .+.+ +-.+.++.+.+.|++|..++..+
T Consensus        83 --~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           83 --KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             --TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             --hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence              3479999987654321   1111 11556678888999888777654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.88  E-value=0.067  Score=42.26  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=55.9

Q ss_pred             eEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEE
Q psy4592          60 KVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~  136 (197)
                      +||.+|+  |.|..+..+++..+ .++++++.+++-.+.+++. ..      ..-+.....+ .+.+.. ....+|+|+.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~-~~~~~~~~~~~~d~vid  222 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVL-GA------KEVLAREDVM-AERIRPLDKQRWAAAVD  222 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHT-TC------SEEEECC----------CCSCCEEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-CC------cEEEecCCcH-HHHHHHhcCCcccEEEE
Confidence            8999997  45666667776655 6899999998888888763 21      1011111111 111111 2347999986


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....           ..++.+.+.|+++|.+++..
T Consensus       223 ~~g~-----------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          223 PVGG-----------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             CSTT-----------TTHHHHHHTEEEEEEEEECS
T ss_pred             CCcH-----------HHHHHHHHhhccCCEEEEEe
Confidence            5421           13577888999999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.56  E-value=0.95  Score=30.24  Aligned_cols=96  Identities=14%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             CCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCcee
Q psy4592          58 PKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D  132 (197)
                      .++|+.+|+|.-+..  ..+.+. + .+++++|.+++.++.+++..          .+.++.+|..+  .+.. ....+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~-g-~~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK-G-HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCHHHHHHcCcccCC
Confidence            358999988643222  223333 3 68999999998776655432          23455565432  2222 235789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|+...+..     .  ....+..+.+.++++ .+++....
T Consensus        72 ~vi~~~~~~-----~--~~~~~~~~~~~~~~~-~ii~~~~~  104 (140)
T 1lss_A           72 MYIAVTGKE-----E--VNLMSSLLAKSYGIN-KTIARISE  104 (140)
T ss_dssp             EEEECCSCH-----H--HHHHHHHHHHHTTCC-CEEEECSS
T ss_pred             EEEEeeCCc-----h--HHHHHHHHHHHcCCC-EEEEEecC
Confidence            999876421     1  123444556667775 45554433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.54  E-value=0.61  Score=38.30  Aligned_cols=97  Identities=21%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             CCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeE
Q psy4592          58 PKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~  133 (197)
                      ..+|+.+|+|.-+ .....+...+ ..+++||.|++.++.+++.           .+.++.+|+.+.  +.. ....+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence            3589999997532 2222222223 7999999999999888752           245677887643  333 2467999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |++....     ..  ....+-...+.+.|+..++.....
T Consensus        72 viv~~~~-----~~--~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           72 LINAIDD-----PQ--TNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             EEECCSS-----HH--HHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             EEECCCC-----hH--HHHHHHHHHHHhCCCCeEEEEECC
Confidence            9987642     11  123445566778899888876543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.54  E-value=1.5  Score=32.92  Aligned_cols=75  Identities=13%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--------  124 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--------  124 (197)
                      .++.+|..|++.| ++.+++    +.+  .+|+.++.+++.++.+.+.+..     ...++.++.+|+.+.-        
T Consensus         6 ~~k~vlVTGas~G-IG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~   77 (252)
T 3h7a_A            6 RNATVAVIGAGDY-IGAEIAKKFAAEG--FTVFAGRRNGEKLAPLVAEIEA-----AGGRIVARSLDARNEDEVTAFLNA   77 (252)
T ss_dssp             CSCEEEEECCSSH-HHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHH-----TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECcCCCHHHHHHHHHH
Confidence            4568888888765 444444    342  6899999988776655554432     2347888888875421        


Q ss_pred             -hhcCCceeEEEECCCC
Q psy4592         125 -SEHQQEFDVIITDSSD  140 (197)
Q Consensus       125 -~~~~~~~D~I~~~~~~  140 (197)
                       ... ++.|++|.+.-.
T Consensus        78 ~~~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           78 ADAH-APLEVTIFNVGA   93 (252)
T ss_dssp             HHHH-SCEEEEEECCCC
T ss_pred             HHhh-CCceEEEECCCc
Confidence             112 579999998753

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.91  E-value=2.2  Score=32.14  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .++.+|..|++.| ++.++++.  ....+|+.++.+++-++.+.+.+..     ...++.++.+|+.+.-      .   
T Consensus         5 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~   78 (257)
T 3imf_A            5 KEKVVIITGGSSG-MGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-----FPGQILTVQMDVRNTDDIQKMIEQID   78 (257)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----STTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            3467887777554 55444432  1126899999998887776665543     2347888888876421      1   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ...++.|++|.+.-
T Consensus        79 ~~~g~id~lv~nAg   92 (257)
T 3imf_A           79 EKFGRIDILINNAA   92 (257)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            11247899998875

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.84  E-value=1.2  Score=30.66  Aligned_cols=98  Identities=10%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             CeEEEEeCCchHhHHHHhcCC--CCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCcee
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP--SVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D  132 (197)
                      .+|+.+|+|  .++..+.+..  ....++++|.+ ++..+..+...+        ..+.++.+|+.+  .+.. .-+.+|
T Consensus         4 ~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~ad   73 (153)
T 1id1_A            4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc--------CCCeEEEcCCCCHHHHHHcChhhCC
Confidence            589999875  4444433211  12689999997 455544443322        247788888753  2332 246789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|++....     ..  .........+.+.|...++.....
T Consensus        74 ~vi~~~~~-----d~--~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           74 AILALSDN-----DA--DNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEEECSSC-----HH--HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EEEEecCC-----hH--HHHHHHHHHHHHCCCCEEEEEECC
Confidence            99987632     11  123445566777788888876544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.71  E-value=3.3  Score=31.14  Aligned_cols=109  Identities=9%  Similarity=0.067  Sum_probs=61.8

Q ss_pred             CCCeEEEEeCCc--h--H-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh
Q psy4592          57 NPKKVLIVGGGD--G--G-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS  125 (197)
Q Consensus        57 ~~~~vLdiG~G~--G--~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~  125 (197)
                      .+++||..|++.  |  . ++..+++.+  .+++.++.++...+.+++.....    ...++.++.+|+.+.      +.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAG--ARLIFTYAGERLEKSVHELAGTL----DRNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHTS----SSCCCEEEECCCSSSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEecCchHHHHHHHHHHHhc----CCCCceEEeCCCCCHHHHHHHHH
Confidence            457899999762  2  1 333444443  68889888876555554443321    223688888886532      11


Q ss_pred             ---hcCCceeEEEECCCCCC-----CCCcccccH--------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 ---EHQQEFDVIITDSSDPV-----GPAESLFQA--------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ---~~~~~~D~I~~~~~~~~-----~~~~~l~~~--------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                         ...++.|+++.+.....     .+......+              .+.+.+...++++|.++..+
T Consensus        80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence               11247899998875322     111111111              24456677888888877665

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.62  E-value=0.61  Score=36.55  Aligned_cols=94  Identities=16%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEe-C-CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          55 HPNPKKVLIVG-G-GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG-~-G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ..++.+||.+| + |.|.++..+++..+ .+++++. +++-.+.+++. ..        . .++..+-.+.+......+|
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~-~~~~~~~~~~l-Ga--------~-~~i~~~~~~~~~~~~~g~D  217 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTA-SKRNHAFLKAL-GA--------E-QCINYHEEDFLLAISTPVD  217 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEE-CHHHHHHHHHH-TC--------S-EEEETTTSCHHHHCCSCEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEe-ccchHHHHHHc-CC--------C-EEEeCCCcchhhhhccCCC
Confidence            35668999997 3 35667777777655 5888887 45447777664 21        1 1221111111222235799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-...           ...++.+.+.|+++|.++...
T Consensus       218 ~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          218 AVIDLVG-----------GDVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             EEEESSC-----------HHHHHHHGGGEEEEEEEEECC
T ss_pred             EEEECCC-----------cHHHHHHHHhccCCCEEEEeC
Confidence            9985442           223488899999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.52  E-value=0.76  Score=31.86  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             CCCCeEEEEeCCchHh-HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhhc-CCce
Q psy4592          56 PNPKKVLIVGGGDGGV-AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSEH-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~~  131 (197)
                      ..+.+|+.+|+|.=+. ....+...+ ..++++|.+++.++.++.   .       ....++.+|..+  .+... ...+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~---~-------~g~~~~~~d~~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNS---E-------FSGFTVVGDAAEFETLKECGMEKA   85 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCT---T-------CCSEEEESCTTSHHHHHTTTGGGC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHh---c-------CCCcEEEecCCCHHHHHHcCcccC
Confidence            3457999999875322 222222223 589999999876543321   1       123455566432  22221 3468


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      |+|+.....     ..  ....+..+.+.+.+...++.....+
T Consensus        86 d~Vi~~~~~-----~~--~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           86 DMVFAFTND-----DS--TNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             SEEEECSSC-----HH--HHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             CEEEEEeCC-----cH--HHHHHHHHHHHHCCCCeEEEEECCH
Confidence            999987642     11  1223344555566777777765443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.46  E-value=4.4  Score=33.27  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             eEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC--------CCCeEEEEcchHHHHhhcC
Q psy4592          60 KVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS--------DPRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        60 ~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~--------~~~~~~~~~d~~~~~~~~~  128 (197)
                      +|..||+|.=+..  ..+++.+  .+|+++|.+++.++..++...... .++.        ..++.+ ..|..+.+.   
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~---   75 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVL---   75 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHH---
T ss_pred             EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhc---
Confidence            6888998854333  3344443  589999999998887665321110 0000        112332 345444333   


Q ss_pred             CceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCC---CcEEEE
Q psy4592         129 QEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRP---GGIVCS  169 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~Lkp---gG~l~~  169 (197)
                       ..|+|+...+.+...+  ..+ +..+.++++.+.|++   +..++.
T Consensus        76 -~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~  121 (436)
T 1mv8_A           76 -DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV  121 (436)
T ss_dssp             -TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred             -cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence             3799999876544211  111 125567778888888   555554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.44  E-value=2.9  Score=31.92  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++...+.+..     ...++.++.+|+.+.-      .   
T Consensus        23 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~   96 (279)
T 3sju_A           23 RPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-----AGHDVDGSSCDVTSTDEVHAAVAAAV   96 (279)
T ss_dssp             --CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            3468888887654 44444432  1126899999998877665554433     2357888888876421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|++|.+.-.
T Consensus        97 ~~~g~id~lv~nAg~  111 (279)
T 3sju_A           97 ERFGPIGILVNSAGR  111 (279)
T ss_dssp             HHHCSCCEEEECCCC
T ss_pred             HHcCCCcEEEECCCC
Confidence            112478999988753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.37  E-value=3.7  Score=31.13  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcC------------HHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEID------------NRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      .++.||..|++.| ++.+++    +.+  .+++.++.+            .+-++.+...+..     ...++.++.+|+
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~   80 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEG--ADIILFDICHDIETNEYPLATSRDLEEAGLEVEK-----TGRKAYTAEVDV   80 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH-----TTSCEEEEECCT
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCC--CeEEEEcccccccccccchhhhHHHHHHHHHHHh-----cCCceEEEEccC
Confidence            4568888888654 444443    343  689999876            5444444433322     234788888887


Q ss_pred             HHHHh------h---cCCceeEEEECCCCCCCCCcccccH--------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         121 FRFMS------E---HQQEFDVIITDSSDPVGPAESLFQA--------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       121 ~~~~~------~---~~~~~D~I~~~~~~~~~~~~~l~~~--------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+.-.      .   .-++.|++|.+.-..... .....+              .+.+.+...|+.+|.++..+
T Consensus        81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            64211      1   124789999986532211 011001              23455667778888877654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.22  E-value=1.5  Score=32.23  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=57.6

Q ss_pred             eEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeEE
Q psy4592          60 KVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~I  134 (197)
                      +|+.+|+|  .++..+++.  .....++++|.+++.++...+..          ...++.+|+.+.  +.. ....+|+|
T Consensus         2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----------~~~~i~gd~~~~~~l~~a~i~~ad~v   69 (218)
T 3l4b_C            2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----------KATIIHGDGSHKEILRDAEVSKNDVV   69 (218)
T ss_dssp             CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----------SSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----------CCeEEEcCCCCHHHHHhcCcccCCEE
Confidence            68888875  444444331  12368999999999877654432          356778887642  222 24678999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ++....     ..  ....+....+.+.+...++.....
T Consensus        70 i~~~~~-----d~--~n~~~~~~a~~~~~~~~iia~~~~  101 (218)
T 3l4b_C           70 VILTPR-----DE--VNLFIAQLVMKDFGVKRVVSLVND  101 (218)
T ss_dssp             EECCSC-----HH--HHHHHHHHHHHTSCCCEEEECCCS
T ss_pred             EEecCC-----cH--HHHHHHHHHHHHcCCCeEEEEEeC
Confidence            976632     11  123445556667777777765443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.19  E-value=2.6  Score=31.75  Aligned_cols=78  Identities=21%  Similarity=0.292  Sum_probs=49.5

Q ss_pred             CCCeEEEEeC-Cch--H-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-------
Q psy4592          57 NPKKVLIVGG-GDG--G-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-------  125 (197)
Q Consensus        57 ~~~~vLdiG~-G~G--~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------  125 (197)
                      .++.||..|+ |.|  . ++..+++.+  .+++.++.+++-.+...+.+...    ...++.++.+|+.+.-.       
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRDQLADL----GLGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTT----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHhc----CCCceEEEEeCCCCHHHHHHHHHH
Confidence            4568999887 444  2 333444443  68999999987776665554321    23578899988764211       


Q ss_pred             --hcCCceeEEEECCCC
Q psy4592         126 --EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 --~~~~~~D~I~~~~~~  140 (197)
                        ...++.|++|.+.-.
T Consensus        95 ~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCcEEEECCCc
Confidence              112478999998753

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.10  E-value=4.2  Score=31.27  Aligned_cols=107  Identities=9%  Similarity=0.051  Sum_probs=60.9

Q ss_pred             CCCeEEEEeCCch-HhH----HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h
Q psy4592          57 NPKKVLIVGGGDG-GVA----REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G-~~~----~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~  125 (197)
                      .++.+|..|++.| +++    ..+++.+  .+|+.++.++...+.+++....      ..++.++.+|+.+.-      .
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAG--AELAFTYQGDALKKRVEPLAEE------LGAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTT--CEEEEEECSHHHHHHHHHHHHH------HTCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh------cCCceEEECCCCCHHHHHHHHH
Confidence            4578999997633 233    3444443  6888999887655544443221      125778888865421      1


Q ss_pred             ---hcCCceeEEEECCCCCC-----CCCccccc--------------HHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 ---EHQQEFDVIITDSSDPV-----GPAESLFQ--------------ASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ---~~~~~~D~I~~~~~~~~-----~~~~~l~~--------------~~~~~~~~~~LkpgG~l~~~~  171 (197)
                         ..-++.|++|.+.-...     .+......              -.+.+.+...|+++|.++..+
T Consensus       102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence               11357999998875321     11111100              124456667788888877654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.92  E-value=4  Score=30.88  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------h-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------E-  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~-  126 (197)
                      .++.+|..|++.| ++.++++.  ....+++.++.+ ++..+...+.+..     ...++.++.+|+.+.-.      . 
T Consensus        17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA-----LGSDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4568888887654 55444432  112677777753 4444444333322     13468888888764311      1 


Q ss_pred             --cCCceeEEEECCCCCCCCC-ccccc--------------HHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 --HQQEFDVIITDSSDPVGPA-ESLFQ--------------ASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 --~~~~~D~I~~~~~~~~~~~-~~l~~--------------~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        .-++.|++|.+.-...... .....              -.+.+.+.+.|+++|.++..+
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence              1247899998764322111 11100              123556677888899887765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.87  E-value=4  Score=31.34  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHH-HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNR-VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------  125 (197)
                      .+++||..|++.| ++.++++..  ...+++.++.+++ ..+...+....     ...++.++.+|+.+.-.        
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK-----EGVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT-----TTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4568888887654 554444321  1268888888754 33333333322     23578888888764211        


Q ss_pred             -hcCCceeEEEECCCCCCC--CCcccc--------------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 -EHQQEFDVIITDSSDPVG--PAESLF--------------QASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~~~~--~~~~l~--------------~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...++.|++|.+......  +.....              .-.+.+.+.+.|+++|.++..+
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence             112478999988643211  111000              0124556677888889877654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.87  E-value=3.3  Score=30.73  Aligned_cols=76  Identities=13%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h-
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~-  125 (197)
                      .++.+|..|++. +++.+++    +.+  .+++.++.+++..+...+.+..     ...++.++.+|+.+.-      . 
T Consensus         4 ~~k~vlITGas~-gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~   75 (247)
T 3lyl_A            4 NEKVALVTGASR-GIGFEVAHALASKG--ATVVGTATSQASAEKFENSMKE-----KGFKARGLVLNISDIESIQNFFAE   75 (247)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEecCCCHHHHHHHHHH
Confidence            346788888655 4544444    342  6899999998776655554432     2346888888875421      1 


Q ss_pred             --hcCCceeEEEECCCC
Q psy4592         126 --EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 --~~~~~~D~I~~~~~~  140 (197)
                        ...++.|+++.+...
T Consensus        76 ~~~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           76 IKAENLAIDILVNNAGI   92 (247)
T ss_dssp             HHHTTCCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence              123478999998753

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.85  E-value=2.7  Score=32.54  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------h
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------E  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~  126 (197)
                      .++.||..|++.| ++.+++    +.+  .+++.++.+++-++.+.+.+..     ...++.++.+|+.+.-.      .
T Consensus        30 ~gk~vlVTGas~g-IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~  101 (301)
T 3tjr_A           30 DGRAAVVTGGASG-IGLATATEFARRG--ARLVLSDVDQPALEQAVNGLRG-----QGFDAHGVVCDVRHLDEMVRLADE  101 (301)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCceEEEEccCCCHHHHHHHHHH
Confidence            4568998888755 444444    343  6899999998877766555432     23478888888764311      1


Q ss_pred             ---cCCceeEEEECCCC
Q psy4592         127 ---HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ---~~~~~D~I~~~~~~  140 (197)
                         ..+..|++|.+.-.
T Consensus       102 ~~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          102 AFRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHHSSCSEEEECCCC
T ss_pred             HHHhCCCCCEEEECCCc
Confidence               12478999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.84  E-value=1.8  Score=34.38  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCC-CCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL-SDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+.+|..+|+|.-+.+.+.. ...+...++.+|++++.++.....+......+ ...+++. ..|..+.+    ...|+
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~~ea~----~~aDi   81 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSYEAAL----TGADC   81 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSHHHHH----TTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCHHHHh----CCCCE
Confidence            345689999997655543322 12222369999999876665222111000000 1224433 26755433    34799


Q ss_pred             EEECCCCCCCC--------Ccccc------cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGP--------AESLF------QASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~--------~~~l~------~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |+.....+..+        ...+.      -.+.++.+.+.. |++.+++.++.
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP  134 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNP  134 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence            99876322211        11111      145666777764 99998876544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.72  E-value=3.2  Score=31.59  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      +++.+|.-|++.| ++.++++.  ....+|..++.+++-++...+.+..     ...++.++.+|+.+.-.         
T Consensus         6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~-----~g~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-----MGKEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4568888887765 44444432  1227899999999887766665543     23578888888764211         


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|++|.|.-
T Consensus        80 ~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           80 ETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCc
Confidence            11357899998864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=90.67  E-value=3.9  Score=34.14  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             CeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC-------CCCeEEEEcchHHHHhhcC
Q psy4592          59 KKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS-------DPRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        59 ~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~-------~~~~~~~~~d~~~~~~~~~  128 (197)
                      .+|..||+|.=+..  ..+++.+...+|+++|.+++.++..++...... .++.       ..++. ...|..+.+.   
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~-~t~~~~~~~~---   85 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLF-FSSDIPKAIA---   85 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEE-EESCHHHHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEE-EECCHHHHhh---
Confidence            58999999865443  334444323689999999998887764311100 0000       01232 2345434333   


Q ss_pred             CceeEEEECCCCCCCC-------Cccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         129 QEFDVIITDSSDPVGP-------AESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~-------~~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ..|+|+...+.+...       ...+ +..+.++.+.+.|++|..++..+
T Consensus        86 -~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           86 -EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             -cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence             379999987654321       1111 12566778888999877766543

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=90.53  E-value=0.27  Score=33.92  Aligned_cols=74  Identities=8%  Similarity=0.182  Sum_probs=43.9

Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592          90 DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV  167 (197)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l  167 (197)
                      +|+.++.++..+.+-    .....+.+.-|-...  +.-+..+||.|+.-.+...  ...++....+..+.+.|||||.|
T Consensus        21 ~pe~le~~k~~~~~~----~~~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~--~~~~l~r~li~~l~~aLkpgG~L   94 (136)
T 2km1_A           21 TPELVENTKAQAASK----KVKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQ--TDIKFPKKLISVLADSLKPNGSL   94 (136)
T ss_dssp             SHHHHHHHHHHHHHT----TEEEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSS--CSCCCCHHHHHHHHTTCCTTCCE
T ss_pred             CHHHHHHHHHhhhcc----ccchhhHHHHHHHhcCcccCCcccccEEEEecCCcc--chhhcCHHHHHHHHHHhCCCCEE
Confidence            577777777654320    012244444441110  0113568998887443221  22445589999999999999999


Q ss_pred             EE
Q psy4592         168 CS  169 (197)
Q Consensus       168 ~~  169 (197)
                      .-
T Consensus        95 ~g   96 (136)
T 2km1_A           95 IG   96 (136)
T ss_dssp             EC
T ss_pred             Ee
Confidence            84

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.46  E-value=0.95  Score=30.64  Aligned_cols=93  Identities=8%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             CeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCcee
Q psy4592          59 KKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D  132 (197)
                      ++|+.+|+|.  ++..+++   ..+ .+++++|.+++.++.+++.           ...++.+|+.+.  +.. ....+|
T Consensus         7 ~~v~I~G~G~--iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~~d   72 (141)
T 3llv_A            7 YEYIVIGSEA--AGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEGVS   72 (141)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCcccCC
Confidence            5899999965  3333332   223 6899999999888776542           245677776542  222 235789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|+...+     +..  .........+.+. ...++.....
T Consensus        73 ~vi~~~~-----~~~--~n~~~~~~a~~~~-~~~iia~~~~  105 (141)
T 3llv_A           73 AVLITGS-----DDE--FNLKILKALRSVS-DVYAIVRVSS  105 (141)
T ss_dssp             EEEECCS-----CHH--HHHHHHHHHHHHC-CCCEEEEESC
T ss_pred             EEEEecC-----CHH--HHHHHHHHHHHhC-CceEEEEEcC
Confidence            9997664     111  0122333444556 6666665443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.40  E-value=1.7  Score=35.98  Aligned_cols=106  Identities=12%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CC------CCCCeEEEEcchHHHHhhcCCce
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GL------SDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~------~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      .+|..||+|.-+.+.+.....+ .+|+++|++++.++..++....... ++      ...++++ ..|..+.+    ...
T Consensus        37 mkIaVIGlG~mG~~lA~~La~G-~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~-ttd~~ea~----~~a  110 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQN-HEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA-TTDKHDAY----RNA  110 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-SEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHH----TTC
T ss_pred             CEEEEECcCHHHHHHHHHHHcC-CeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEE-EcCHHHHH----hCC
Confidence            5899999986554433221123 7999999999998877663211000 00      0113332 34544433    347


Q ss_pred             eEEEECCCCCCCCC---ccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPA---ESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~---~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+...|.+....   +.+ .-.+.++.+.+ |+||..++..+
T Consensus       111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S  153 (432)
T 3pid_A          111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS  153 (432)
T ss_dssp             SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS
T ss_pred             CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC
Confidence            99998876543211   111 11456677778 89988777644

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.29  E-value=0.37  Score=39.28  Aligned_cols=48  Identities=23%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcC-------CCCccEEEEEcCHHHHHHHHhhcC
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKH-------PSVESAYLVEIDNRVIEVSKKYLP  102 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~ve~~~~~~~~a~~~~~  102 (197)
                      .+.+-.|+|+|.|.|.++.-+++.       ....+++.||+||...+.=++.+.
T Consensus        78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            344568999999999998776642       123589999999988775555553

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.18  E-value=1.7  Score=33.19  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~---  125 (197)
                      +++.+|.-|++.| ++.++++.  ....+|..++.+++.++.+.+.+..     ...++..+.+|+.+.      +.   
T Consensus         8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~-----~g~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR-----KGYDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-----TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            5667777777665 55444432  1227899999998877655554433     234677777776532      11   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|++|.|.-.
T Consensus        82 ~~~G~iDiLVNNAG~   96 (255)
T 4g81_D           82 AEGIHVDILINNAGI   96 (255)
T ss_dssp             HTTCCCCEEEECCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence            124689999998743

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.17  E-value=1.7  Score=34.12  Aligned_cols=114  Identities=10%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             CCeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          58 PKKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        58 ~~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+|..||+|..+  ++..++......+++.+|++++....+......     ..++++.. .|. +.+    ...|+|+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~-----~~~~i~~t-~d~-~~l----~~aD~Vi   82 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIF-----NLPNVEIS-KDL-SAS----AHSKVVI   82 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHH-----TCTTEEEE-SCG-GGG----TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhh-----cCCCeEEe-CCH-HHH----CCCCEEE
Confidence            3689999999633  444444433335899999998633233222111     22356553 564 222    3479999


Q ss_pred             ECCCCCCCCCcc--cc------cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHH
Q psy4592         136 TDSSDPVGPAES--LF------QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH  187 (197)
Q Consensus       136 ~~~~~~~~~~~~--l~------~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  187 (197)
                      ...-.+.....+  +.      ..+.++.+.+.. |++.+++.++.    .+.+..++..
T Consensus        83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP----~~~~t~~~~~  137 (303)
T 2i6t_A           83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP----VEIMTYVTWK  137 (303)
T ss_dssp             ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS----HHHHHHHHHH
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh----HHHHHHHHHH
Confidence            875332100000  00      134556666664 99998876553    3444444444

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=90.14  E-value=2.6  Score=34.33  Aligned_cols=103  Identities=10%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             eEEEEeCCchHhHH--HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CC------CCCCeEEEEcchHHHHhhcCCc
Q psy4592          60 KVLIVGGGDGGVAR--EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GL------SDPRLTVHVGDGFRFMSEHQQE  130 (197)
Q Consensus        60 ~vLdiG~G~G~~~~--~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~------~~~~~~~~~~d~~~~~~~~~~~  130 (197)
                      +|..||+|.=+...  .+++  + .+|+++|.+++.++..++....+.. ++      ...++.+ ..|..+.+.    .
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G-~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~~----~   73 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--Q-NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAYK----E   73 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--T-SEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHHH----H
T ss_pred             EEEEECCCHHHHHHHHHHhC--C-CEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEE-eCCHHHHhc----C
Confidence            68889987533332  2333  3 6899999999888766553211000 00      0012222 344433333    3


Q ss_pred             eeEEEECCCCCCC---CCccc-ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVG---PAESL-FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~---~~~~l-~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .|+|+...+.+..   ....+ ...+.++.+.+ ++++..++..+
T Consensus        74 aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S  117 (402)
T 1dlj_A           74 AELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS  117 (402)
T ss_dssp             CSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS
T ss_pred             CCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC
Confidence            7999998765421   11111 12667778888 88887777633

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.07  E-value=2.9  Score=31.26  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--h-----
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--E-----  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~-----  126 (197)
                      ++++||..|+ +|+++.++++..   ...+++.++.+++-.+...+.+..     ...++.++.+|+.+.-.  .     
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~   76 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-----EGLSPRFHQLDIDDLQSIRALRDFL   76 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH-----TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh-----cCCeeEEEECCCCCHHHHHHHHHHH
Confidence            3457877775 556666555421   236899999987765554444322     12467888888764211  1     


Q ss_pred             --cCCceeEEEECCCCCCCCCcccc---------------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 --HQQEFDVIITDSSDPVGPAESLF---------------QASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 --~~~~~D~I~~~~~~~~~~~~~l~---------------~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        ..++.|+||.+............               ...+++.+.+.++++|.+++.+
T Consensus        77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence              12379999988643221110000               0124455566677778777654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.98  E-value=2.6  Score=32.16  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~  126 (197)
                      .++.+|..|++.| ++.+++    +.+  .+|+.++.+++.++...+.+..     ...++.++.+|+.+.-      ..
T Consensus        31 ~gk~~lVTGas~G-IG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~v~~~~~~  102 (276)
T 3r1i_A           31 SGKRALITGASTG-IGKKVALAYAEAG--AQVAVAARHSDALQVVADEIAG-----VGGKALPIRCDVTQPDQVRGMLDQ  102 (276)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHH-----TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCHHHHHHHHHH
Confidence            4568888887654 444443    343  6899999988766655554432     2346778888876421      11


Q ss_pred             ---cCCceeEEEECCCC
Q psy4592         127 ---HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ---~~~~~D~I~~~~~~  140 (197)
                         .-++.|++|.+.-.
T Consensus       103 ~~~~~g~iD~lvnnAg~  119 (276)
T 3r1i_A          103 MTGELGGIDIAVCNAGI  119 (276)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               12478999998753

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.97  E-value=4.5  Score=31.72  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=56.3

Q ss_pred             CCCeEEEEeCCchHhHH--HHhcCCCCccEEEEEcCHHHHHH-HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAR--EVLKHPSVESAYLVEIDNRVIEV-SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~--~l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+.+|..+|+|.=+.+.  .+.......+++.+|++++..+. +.......  .....++++...+...     -...|+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~~~a-----l~~aDv   77 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK--VFAPKPVDIWHGDYDD-----CRDADL   77 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT--TSSSSCCEEEECCGGG-----TTTCSE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHh--hhcCCCeEEEcCcHHH-----hCCCCE
Confidence            34689999997533332  23222223589999999875442 22211100  0012245555544221     245899


Q ss_pred             EEECCCCCCCCC---cccc------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPA---ESLF------QASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~---~~l~------~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+...+.+..+.   ..+.      ..+..+.+.+. .|++.+++.++
T Consensus        78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~tN  124 (316)
T 1ldn_A           78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATN  124 (316)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSS
T ss_pred             EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeCC
Confidence            999865444321   1111      12344555555 59998887544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.90  E-value=1.8  Score=34.05  Aligned_cols=105  Identities=17%  Similarity=0.276  Sum_probs=56.5

Q ss_pred             CCCeEEEEeCCchHhHHHH--hcCCCCccEEEEEcCHHHHHH-HHh---hcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592          57 NPKKVLIVGGGDGGVAREV--LKHPSVESAYLVEIDNRVIEV-SKK---YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE  130 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l--~~~~~~~~v~~ve~~~~~~~~-a~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  130 (197)
                      .+.+|..+|+|.-+.+...  +...-..++..+|++++.++- +..   ..+.     ...++++...+. +.+    ..
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~-----~~~~~~v~~~~~-~a~----~~   74 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPY-----SPTTVRVKAGEY-SDC----HD   74 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGG-----SSSCCEEEECCG-GGG----TT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhh-----cCCCeEEEeCCH-HHh----CC
Confidence            3468999999765544332  222222589999999865442 111   1221     113455555442 222    34


Q ss_pred             eeEEEECCCCCCCCCcc---c--cc----HHHHHHHHhhcCCCcEEEEEcC
Q psy4592         131 FDVIITDSSDPVGPAES---L--FQ----ASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~---l--~~----~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      .|+|+.....+..+...   +  .+    .+..+.+.+. .|++.+++.++
T Consensus        75 aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  124 (317)
T 3d0o_A           75 ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN  124 (317)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence            79999877554432210   0  01    2233444444 89999998553

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=89.90  E-value=3.9  Score=29.64  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             eEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH-H--HhhcCCceeEE
Q psy4592          60 KVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR-F--MSEHQQEFDVI  134 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~~~D~I  134 (197)
                      +||..|+ +|.++.++.+.  ..+.+|++++-+++-       ...      .++++++.+|+.+ .  +...-+.+|+|
T Consensus         2 ~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~-------~~~------~~~~~~~~~D~~d~~~~~~~~~~~~d~v   67 (219)
T 3dqp_A            2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKVEQ-------VPQ------YNNVKAVHFDVDWTPEEMAKQLHGMDAI   67 (219)
T ss_dssp             EEEEEST-TSHHHHHHHHHHTTSSCEEEEEESSGGG-------SCC------CTTEEEEECCTTSCHHHHHTTTTTCSEE
T ss_pred             eEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCccc-------hhh------cCCceEEEecccCCHHHHHHHHcCCCEE
Confidence            6888885 56666665542  123689999987642       111      1578999999866 2  33334579999


Q ss_pred             EECCCC
Q psy4592         135 ITDSSD  140 (197)
Q Consensus       135 ~~~~~~  140 (197)
                      +.+...
T Consensus        68 i~~ag~   73 (219)
T 3dqp_A           68 INVSGS   73 (219)
T ss_dssp             EECCCC
T ss_pred             EECCcC
Confidence            987754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.74  E-value=0.44  Score=37.86  Aligned_cols=94  Identities=9%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             CeEEEEe-CC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEE
Q psy4592          59 KKVLIVG-GG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVI  134 (197)
Q Consensus        59 ~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I  134 (197)
                      +.||..| +| .|..+..+++..+ .++++++.+++-.+.+++.-.       ..-+.....|..+.+...  ...+|+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~~Ga-------~~~~~~~~~~~~~~v~~~~~~~g~D~v  237 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEG-FRPIVTVRRDEQIALLKDIGA-------AHVLNEKAPDFEATLREVMKAEQPRIF  237 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESCGGGHHHHHHHTC-------SEEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCC-------CEEEECCcHHHHHHHHHHhcCCCCcEE
Confidence            4555543 22 3444455555555 599999999988888876421       101111112333333321  2369999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +-...           ...++.+.+.|+++|.+++..
T Consensus       238 id~~g-----------~~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          238 LDAVT-----------GPLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EESSC-----------HHHHHHHHHHSCTTCEEEECC
T ss_pred             EECCC-----------ChhHHHHHhhhcCCCEEEEEe
Confidence            86542           234477889999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.72  E-value=1.3  Score=36.89  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~  131 (197)
                      +.++|+.+|||.  ++..+++.  ..+..++.||.+++.++.+...+          .+..+.||+.+.  +.. ..+.+
T Consensus         2 ~~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----------~~~~i~Gd~~~~~~L~~Agi~~a   69 (461)
T 4g65_A            2 NAMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY----------DLRVVNGHASHPDVLHEAGAQDA   69 (461)
T ss_dssp             CCEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----------SCEEEESCTTCHHHHHHHTTTTC
T ss_pred             CcCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----------CcEEEEEcCCCHHHHHhcCCCcC
Confidence            456899999985  33333332  12368999999999998777654          356788988643  332 35678


Q ss_pred             eEEEEC
Q psy4592         132 DVIITD  137 (197)
Q Consensus       132 D~I~~~  137 (197)
                      |++++-
T Consensus        70 d~~ia~   75 (461)
T 4g65_A           70 DMLVAV   75 (461)
T ss_dssp             SEEEEC
T ss_pred             CEEEEE
Confidence            988874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.68  E-value=1.4  Score=34.00  Aligned_cols=101  Identities=18%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC------C-CCCC-------CCeEEEEcchHH
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA------V-GLSD-------PRLTVHVGDGFR  122 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~------~-~~~~-------~~~~~~~~d~~~  122 (197)
                      ++|..||+|+=+  ++..++.. + .+|+.+|.+++.++.+++.+....      . ....       .+++. ..|..+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH-G-FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence            589999998633  23333334 3 689999999998887765421000      0 0000       01222 344333


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+    ...|+|+...+..    . -....+++++...++|+..++.++
T Consensus        82 ~~----~~aDlVi~av~~~----~-~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           82 AV----KDADLVIEAVPES----L-DLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             HT----TTCSEEEECCCSC----H-HHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             Hh----ccCCEEEEeccCc----H-HHHHHHHHHHHhhCCCCcEEEECC
Confidence            22    4589999877521    1 112667888999999988776554

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=89.59  E-value=2.8  Score=32.40  Aligned_cols=79  Identities=15%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.||..|++.| ++.++++.  ..+.+|+.++.+++-++...+.+...    ...++.++.+|+.+.-.         
T Consensus        40 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~  114 (293)
T 3rih_A           40 SARSVLVTGGTKG-IGRGIATVFARAGANVAVAARSPRELSSVTAELGEL----GAGNVIGVRLDVSDPGSCADAARTVV  114 (293)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS----SSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----CCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence            4567877777554 55444432  11268999999987766655555431    22478888888764311         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|++|.+.-.
T Consensus       115 ~~~g~iD~lvnnAg~  129 (293)
T 3rih_A          115 DAFGALDVVCANAGI  129 (293)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112478999988643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.36  E-value=4.5  Score=29.22  Aligned_cols=100  Identities=13%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             eEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          60 KVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +||..|+ +|.++..+.+..  ...+|+++.-++.-.+..   .        .++++++.+|+.+.-...-+.+|+||.+
T Consensus         2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~--------~~~~~~~~~D~~d~~~~~~~~~d~vi~~   69 (224)
T 3h2s_A            2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR---L--------GATVATLVKEPLVLTEADLDSVDAVVDA   69 (224)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---T--------CTTSEEEECCGGGCCHHHHTTCSEEEEC
T ss_pred             EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc---c--------CCCceEEecccccccHhhcccCCEEEEC
Confidence            6888886 455555544321  126899999887654422   1        2468889999764311112468999988


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      ....+.+............+.+.++.. +.+++.+
T Consensus        70 ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S  104 (224)
T 3h2s_A           70 LSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFIL  104 (224)
T ss_dssp             CCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred             CccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            754332221111233445555555543 5666553

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=89.34  E-value=1.9  Score=32.30  Aligned_cols=78  Identities=21%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             HHHHhhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcC--HHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592          45 EMIAFLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRLTVHVGDG  120 (197)
Q Consensus        45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~  120 (197)
                      +.+.++|++..-.+++||.+|+|.=+....  +++.+  +.++.++.+  +++.+++.+           .+++++..+.
T Consensus        18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~l~~~-----------~~i~~i~~~~   84 (223)
T 3dfz_A           18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVSAEINEWEAK-----------GQLRVKRKKV   84 (223)
T ss_dssp             ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCCHHHHHHHHT-----------TSCEEECSCC
T ss_pred             cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHHHc-----------CCcEEEECCC
Confidence            456667777777888999999986554433  33332  688888643  444444432           2455555443


Q ss_pred             HHHHhhcCCceeEEEECC
Q psy4592         121 FRFMSEHQQEFDVIITDS  138 (197)
Q Consensus       121 ~~~~~~~~~~~D~I~~~~  138 (197)
                      .   +..-..+|+||+..
T Consensus        85 ~---~~dL~~adLVIaAT   99 (223)
T 3dfz_A           85 G---EEDLLNVFFIVVAT   99 (223)
T ss_dssp             C---GGGSSSCSEEEECC
T ss_pred             C---HhHhCCCCEEEECC
Confidence            2   12235689999765

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.31  E-value=5.6  Score=29.91  Aligned_cols=75  Identities=17%  Similarity=0.114  Sum_probs=48.7

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-------
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------  125 (197)
                      .++.+|..|++.| ++.+    +++.+  .+|+.++.+++-++...+.+..     ...++.++.+|+.+.-.       
T Consensus        10 ~~k~vlVTGas~g-IG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~   81 (264)
T 3ucx_A           10 TDKVVVISGVGPA-LGTTLARRCAEQG--ADLVLAARTVERLEDVAKQVTD-----TGRRALSVGTDITDDAQVAHLVDE   81 (264)
T ss_dssp             TTCEEEEESCCTT-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCcH-HHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            4568888888665 4444    44443  6899999998777665554432     23478888888764311       


Q ss_pred             --hcCCceeEEEECCC
Q psy4592         126 --EHQQEFDVIITDSS  139 (197)
Q Consensus       126 --~~~~~~D~I~~~~~  139 (197)
                        ..-++.|++|.+..
T Consensus        82 ~~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           82 TMKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHHTSCCSEEEECCC
T ss_pred             HHHHcCCCcEEEECCC
Confidence              11357899999873

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=89.30  E-value=4.1  Score=30.89  Aligned_cols=78  Identities=9%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .++.+|..|++. +++.++++.  ..+.+|+.++.+++-++...+.+..     ...++.++.+|+.+.-      .   
T Consensus        20 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           20 KGTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-----KGLNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHHH
Confidence            356888888754 455544432  1126899999998766544443322     1246788888865321      1   


Q ss_pred             hcC-CceeEEEECCCC
Q psy4592         126 EHQ-QEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~-~~~D~I~~~~~~  140 (197)
                      ..- +..|++|.+.-.
T Consensus        94 ~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           94 HVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHTTSCCCEEEECCCC
T ss_pred             HHcCCCCcEEEECCCC
Confidence            112 678999998743

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.16  E-value=0.091  Score=41.50  Aligned_cols=88  Identities=16%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             eEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH----Hhh-cCCcee
Q psy4592          60 KVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF----MSE-HQQEFD  132 (197)
Q Consensus        60 ~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~-~~~~~D  132 (197)
                      +||.+|+  |.|..+..+++..+ .++++++.+++-.+.+++. ..        . .++  |..+.    +.. ....+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga--------~-~v~--~~~~~~~~~~~~~~~~~~d  219 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQL-GA--------S-EVI--SREDVYDGTLKALSKQQWQ  219 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHH-TC--------S-EEE--EHHHHCSSCCCSSCCCCEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC--------c-EEE--ECCCchHHHHHHhhcCCcc
Confidence            8999997  45556666666555 5899999988888888763 21        1 111  21111    011 124699


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+....           ...++.+.+.|+++|.+++..
T Consensus       220 ~vid~~g-----------~~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          220 GAVDPVG-----------GKQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEEESCC-----------THHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCc-----------HHHHHHHHHhhcCCCEEEEEe
Confidence            9885542           125688889999999998764

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.12  E-value=6  Score=30.00  Aligned_cols=78  Identities=13%  Similarity=0.171  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEc-------------CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEI-------------DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF  121 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~  121 (197)
                      .++.+|..|++.| ++.++++.  ....+++.++.             +++-++...+.+..     ...++.++.+|+.
T Consensus        14 ~gk~~lVTGas~g-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~   87 (280)
T 3pgx_A           14 QGRVAFITGAARG-QGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED-----QGRKALTRVLDVR   87 (280)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT-----TTCCEEEEECCTT
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh-----cCCeEEEEEcCCC
Confidence            4568888888665 44444432  11268989887             56555555444332     2357888888875


Q ss_pred             HHH------h---hcCCceeEEEECCCC
Q psy4592         122 RFM------S---EHQQEFDVIITDSSD  140 (197)
Q Consensus       122 ~~~------~---~~~~~~D~I~~~~~~  140 (197)
                      +.-      .   ..-++.|++|.+.-.
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           88 DDAALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            421      1   112478999998753

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.12  E-value=5.9  Score=29.91  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .+++||..|++. +++.++++..  .+.+|++++.+++-.+...+.+..     ...++.++.+|+.+.-      .   
T Consensus        30 ~~k~vlITGasg-gIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~v~~~~~~~~  103 (272)
T 1yb1_A           30 TGEIVLITGAGH-GIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCSNREDIYSSAKKVK  103 (272)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh-----cCCeEEEEEeeCCCHHHHHHHHHHHH
Confidence            456888888654 5555554321  126899999988766554443332     1246888888865421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...+..|+||.+...
T Consensus       104 ~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A          104 AEIGDVSILVNNAGV  118 (272)
T ss_dssp             HHTCCCSEEEECCCC
T ss_pred             HHCCCCcEEEECCCc
Confidence            113478999998753

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.09  E-value=6  Score=29.99  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE-  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~-  126 (197)
                      .++.+|..|++.| ++.++++.  ....++..++.+ ++..+...+.+..     ...++.++.+|+.+.-      .. 
T Consensus        30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ-----AGGRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4568888888664 44444432  112678777654 3444433333322     1346788888876421      11 


Q ss_pred             --cCCceeEEEECCCCCCCCC-cccc--------------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592         127 --HQQEFDVIITDSSDPVGPA-ESLF--------------QASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       127 --~~~~~D~I~~~~~~~~~~~-~~l~--------------~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        .-++.|++|.+.-...... ....              .-.+.+.+.+.|+++|.++..+
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence              1247899999875322111 1100              0124556677888889877764

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=89.08  E-value=0.39  Score=40.87  Aligned_cols=67  Identities=15%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             CCceeEEEECCCCCCCCCc-cccc------HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         128 QQEFDVIITDSSDPVGPAE-SLFQ------ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~-~l~~------~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      .++||+|++|.-.+...+. +...      ..+-..+.++|||||.+++..+.  +-...-+.+...+.+.|..++
T Consensus       219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YG--yADr~sE~vv~alaRkF~~~r  292 (670)
T 4gua_A          219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYG--YADRNSEDVVTALARKFVRVS  292 (670)
T ss_dssp             CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC--CCSHHHHHHHHHHHHTEEEEE
T ss_pred             CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEee--ccccchHHHHHHHHhheeeee
Confidence            4699999999866543221 1110      22445677999999999987643  334555667777777776655

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.01  E-value=3.9  Score=27.70  Aligned_cols=85  Identities=22%  Similarity=0.301  Sum_probs=48.6

Q ss_pred             CCeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE-EEcchHHHHhhcCCceeE
Q psy4592          58 PKKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV-HVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~D~  133 (197)
                      +++|+.+|+|.  ++..+++   ..+ .+++.++.+++-.+...+.+.          ... ...+..+.+.    .+|+
T Consensus        21 ~~~v~iiG~G~--iG~~~a~~l~~~g-~~v~v~~r~~~~~~~~a~~~~----------~~~~~~~~~~~~~~----~~Di   83 (144)
T 3oj0_A           21 GNKILLVGNGM--LASEIAPYFSYPQ-YKVTVAGRNIDHVRAFAEKYE----------YEYVLINDIDSLIK----NNDV   83 (144)
T ss_dssp             CCEEEEECCSH--HHHHHGGGCCTTT-CEEEEEESCHHHHHHHHHHHT----------CEEEECSCHHHHHH----TCSE
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHhC----------CceEeecCHHHHhc----CCCE
Confidence            67999999854  4444443   223 459999999877654333332          122 2344444443    4899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+...+.+..    +..       ...|++|+.++-.
T Consensus        84 vi~at~~~~~----~~~-------~~~l~~g~~vid~  109 (144)
T 3oj0_A           84 IITATSSKTP----IVE-------ERSLMPGKLFIDL  109 (144)
T ss_dssp             EEECSCCSSC----SBC-------GGGCCTTCEEEEC
T ss_pred             EEEeCCCCCc----Eee-------HHHcCCCCEEEEc
Confidence            9987754321    111       2457777666543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=89.00  E-value=4.3  Score=31.72  Aligned_cols=106  Identities=12%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEEEE
Q psy4592          60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I~~  136 (197)
                      +|..+|+|.-+.+..  ++......+++.+|++++.++.....+...... .....++.. .|..+ +    ...|+|+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~-~~~~~~i~~t~d~~~-l----~~aDvVii   75 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV-GLFDTKVTGSNDYAD-T----ANSDIVII   75 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH-HTCCCEEEEESCGGG-G----TTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhc-ccCCcEEEECCCHHH-H----CCCCEEEE
Confidence            688999976544433  333312368999999987666332111100000 011223332 55433 2    45899999


Q ss_pred             CCCCCCCCCc---ccc--c----HHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAE---SLF--Q----ASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~---~l~--~----~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ..+.+..+..   .+.  +    .+..+.+.+. .|++.+++.++
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tN  119 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSN  119 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcC
Confidence            8765543321   110  1    2344445555 69998887644

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=88.91  E-value=6.1  Score=29.85  Aligned_cols=69  Identities=25%  Similarity=0.491  Sum_probs=45.2

Q ss_pred             CeEEEEeCCchHhHHHH----hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          59 KKVLIVGGGDGGVAREV----LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      ++||.-|++.| ++.++    ++.+  .+|..+|.+++..+...+.         ..++..+.+|+.+.-.         
T Consensus         3 K~vlVTGas~G-IG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~v~~~~   70 (247)
T 3ged_A            3 RGVIVTGGGHG-IGKQICLDFLEAG--DKVCFIDIDEKRSADFAKE---------RPNLFYFHGDVADPLTLKKFVEYAM   70 (247)
T ss_dssp             CEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHTT---------CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEecCCCH-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh---------cCCEEEEEecCCCHHHHHHHHHHHH
Confidence            57888888776 44444    3343  7999999998776654432         2467788888764211         


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|++|.|.-
T Consensus        71 ~~~g~iDiLVNNAG   84 (247)
T 3ged_A           71 EKLQRIDVLVNNAC   84 (247)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            11357899998874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.91  E-value=5.3  Score=31.15  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      .++.||..|++.| ++.++++..  .+.+|++++.+++-++.+.+.+...+   ...++.++.+|+.+.-      .   
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4568998888654 444444321  12689999999877665555433210   1236888888876421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...+..|++|.+.-.
T Consensus        83 ~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           83 ARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhCCCCCEEEECCCc
Confidence            113578999998753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=88.90  E-value=3.3  Score=31.14  Aligned_cols=78  Identities=10%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.||..|++. +++.++++.  ..+.+|+.++.+++-++...+.+..     ...++.++.+|+.+.-.         
T Consensus        28 ~~k~vlITGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~  101 (262)
T 3rkr_A           28 SGQVAVVTGASR-GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA-----AGGEAESHACDLSHSDAIAAFATGVL  101 (262)
T ss_dssp             TTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----hCCceeEEEecCCCHHHHHHHHHHHH
Confidence            346788888754 455554432  1126899999998877666555432     23468888888754211         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...++.|++|.+...
T Consensus       102 ~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          102 AAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            112478999998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.86  E-value=3.4  Score=31.39  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             CCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---E  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---~  126 (197)
                      ++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++.+.+.+..     ...++.++.+|+.+.-      .   .
T Consensus         4 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~~   77 (264)
T 3tfo_A            4 DKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRD-----AGGTALAQVLDVTDRHSVAAFAQAAVD   77 (264)
T ss_dssp             TCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-----TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            457888887654 55444432  1126899999998777666554432     1346778888875321      1   1


Q ss_pred             cCCceeEEEECCCC
Q psy4592         127 HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ~~~~~D~I~~~~~~  140 (197)
                      .-++.|++|.+.-.
T Consensus        78 ~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           78 TWGRIDVLVNNAGV   91 (264)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            12478999988743

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.86  E-value=5.2  Score=30.73  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCH--HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDN--RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~-  125 (197)
                      .++.+|..|++.| ++.++++.  ....+++.++.+.  ...+...+....     ...++.++.+|+.+.-      . 
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE-----CGRKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH-----TTCCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH-----cCCcEEEEEecCCCHHHHHHHHHH
Confidence            4568888887654 55544432  1126788887762  333333332222     1246778888765421      1 


Q ss_pred             --hcCCceeEEEECCCCCC-CCC-ccccc--------------HHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 --EHQQEFDVIITDSSDPV-GPA-ESLFQ--------------ASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 --~~~~~~D~I~~~~~~~~-~~~-~~l~~--------------~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        ..-+..|+++.+.-... ... ..+..              -.+.+.+...++++|.++..+
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence              11257899999875322 111 11100              124556667888889877765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.81  E-value=4.1  Score=30.56  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~--  126 (197)
                      .+++||..|++. +++.++++.  ....+|+.++.+++-++...+.+..     ...++.++.+|+.+.-      ..  
T Consensus         8 ~~k~vlVTGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (260)
T 2ae2_A            8 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-----KGFKVEASVCDLSSRSERQELMNTVA   81 (260)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            346888888754 455444432  1126899999988766544443322     1246778888876421      11  


Q ss_pred             -cC-CceeEEEECCCC
Q psy4592         127 -HQ-QEFDVIITDSSD  140 (197)
Q Consensus       127 -~~-~~~D~I~~~~~~  140 (197)
                       .- +..|++|.+.-.
T Consensus        82 ~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           82 NHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHTTTCCCEEEECCCC
T ss_pred             HHcCCCCCEEEECCCC
Confidence             12 679999998753

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.70  E-value=4.8  Score=30.28  Aligned_cols=78  Identities=14%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++++|..|++. +++.++++.  ....+|+.++.+++-++.+.+.+...    ...++.++.+|+.+.-.         
T Consensus         9 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (262)
T 3pk0_A            9 QGRSVVVTGGTK-GIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL----GSGKVIGVQTDVSDRAQCDALAGRAV   83 (262)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----SSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----CCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            456788777755 455544432  11268999999988776655544331    22478888888764211         


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|++|.+.-
T Consensus        84 ~~~g~id~lvnnAg   97 (262)
T 3pk0_A           84 EEFGGIDVVCANAG   97 (262)
T ss_dssp             HHHSCCSEEEECCC
T ss_pred             HHhCCCCEEEECCC
Confidence            11247899999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.38  E-value=1.8  Score=34.14  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC-C-CCCCC-CCCeEEEEcchHHHHhhcCCceeE
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG-M-AVGLS-DPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~-~-~~~~~-~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+|..||+|.-+  ++..+.+. + .+|++++.+++.++..++.... . ..... ..++.....|..+.+    ..+|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~   78 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   78 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCCE
Confidence            589999998633  22334333 2 5799999998877766554210 0 00000 001112234544433    35899


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+...+...       ..+.++.+...++++..++..
T Consensus        79 vi~~v~~~~-------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           79 ILIVVPAIH-------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEECSCGGG-------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEeCCchH-------HHHHHHHHHHhCCCCCEEEEc
Confidence            998775221       166788888889988766543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=88.38  E-value=3.3  Score=30.81  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.||..|++.| ++.++++.  ....+++.++.+++..+...+.+..     ...++.++.+|+.+.-.         
T Consensus         8 ~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            8 ENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA-----DGGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4568888887654 44444432  1126899999998877666554432     23468888888764311         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...++.|++|.+...
T Consensus        82 ~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            112478999998743

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.33  E-value=0.85  Score=35.85  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             CCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CCC-CCCeEEEEcchHHHHhhcCCcee
Q psy4592          57 NPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GLS-DPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~-~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      ...+|..||+|.-+.+  ..+.+.+  ..|+.+ .+++.++..++.--.... +.. ..++.. ..|..+     ...+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~~-----~~~~D   88 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDPSA-----VQGAD   88 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCGGG-----GTTCS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCHHH-----cCCCC
Confidence            4569999999865433  3344442  588899 888887777653111000 000 001111 233221     24689


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+...+..     .  ..+.++.+...++++..++...
T Consensus        89 ~vilavk~~-----~--~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           89 LVLFCVKST-----D--TQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             EEEECCCGG-----G--HHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEEEEcccc-----c--HHHHHHHHHHhcCCCCEEEEeC
Confidence            999877532     1  2678899999999988766543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=88.32  E-value=2.1  Score=34.07  Aligned_cols=95  Identities=15%  Similarity=0.179  Sum_probs=56.0

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      +.+.+||.+|+|. |.++..+++.. + .++++++.+++-.+.+++. ..      ..-+.... +..+.+.. . ...+
T Consensus       185 ~~g~~VlV~GaG~vG~~avqlak~~~G-a~Vi~~~~~~~~~~~~~~l-Ga------~~vi~~~~-~~~~~v~~~~~g~g~  255 (359)
T 1h2b_A          185 YPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL-GA------DHVVDARR-DPVKQVMELTRGRGV  255 (359)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT-TC------SEEEETTS-CHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHh-CC------CEEEeccc-hHHHHHHHHhCCCCC
Confidence            4668999999852 33445566654 4 6899999999988888763 21      10011100 11222222 2 2379


Q ss_pred             eEEEECCCCCCCCCcccccHH--HHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQAS--YFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~--~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-...     .     ..  .++.+.+.  ++|.+++..
T Consensus       256 Dvvid~~G-----~-----~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          256 NVAMDFVG-----S-----QATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             EEEEESSC-----C-----HHHHHHGGGGEE--EEEEEEECC
T ss_pred             cEEEECCC-----C-----chHHHHHHHhhc--CCCEEEEEe
Confidence            99986542     1     22  45566666  899888754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=88.30  E-value=2.3  Score=33.45  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             CCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHH-HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEV-SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ++.+|..+|+|.=+.+..  ++...-..+++.+|++++.++- +.......  .+. .++++..+|...     -...|+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~--~~~-~~~~i~~~~~~a-----~~~aDv   77 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGL--PFM-GQMSLYAGDYSD-----VKDCDV   77 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSC--CCT-TCEEEC--CGGG-----GTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhH--Hhc-CCeEEEECCHHH-----hCCCCE
Confidence            456899999864333322  2233223489999999865442 22221110  011 355555444221     245799


Q ss_pred             EEECCCCCCCCCc---cc--cc----HHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITDSSDPVGPAE---SL--FQ----ASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~~~~~~~---~l--~~----~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+.....+..+..   .+  .+    .+..+.+.+. .|++.+++.++
T Consensus        78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  124 (318)
T 1y6j_A           78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN  124 (318)
T ss_dssp             EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred             EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence            9987755442221   00  00    2344455555 79999888543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.05  E-value=3.4  Score=26.45  Aligned_cols=69  Identities=16%  Similarity=0.223  Sum_probs=41.8

Q ss_pred             CCeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--HhhcCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSEHQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~D  132 (197)
                      .++|+.+|+|  .++..+.+   ..+..++++++.+++-.+.++.           ..+.+...|..+.  +...-..+|
T Consensus         5 ~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~d   71 (118)
T 3ic5_A            5 RWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALGGFD   71 (118)
T ss_dssp             CEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTTTCS
T ss_pred             cCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHcCCC
Confidence            3589999984  44443332   2233689999999887665541           1345566665432  222235789


Q ss_pred             EEEECCC
Q psy4592         133 VIITDSS  139 (197)
Q Consensus       133 ~I~~~~~  139 (197)
                      +|+...+
T Consensus        72 ~vi~~~~   78 (118)
T 3ic5_A           72 AVISAAP   78 (118)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9998763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.04  E-value=2.7  Score=32.02  Aligned_cols=78  Identities=10%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.+|..|++.| ++.++++.  ....+|+.++.+++-++...+.+..     ...++.++.+|+.+.-.         
T Consensus        25 ~gk~~lVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~   98 (271)
T 4ibo_A           25 GGRTALVTGSSRG-LGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN-----VGHDAEAVAFDVTSESEIIEAFARLD   98 (271)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-----TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence            4568888886554 55444432  1126899999988776655554432     23467788887654211         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...++.|++|.+.-.
T Consensus        99 ~~~g~iD~lv~nAg~  113 (271)
T 4ibo_A           99 EQGIDVDILVNNAGI  113 (271)
T ss_dssp             HHTCCCCEEEECCCC
T ss_pred             HHCCCCCEEEECCCC
Confidence            123578999998753

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.03  E-value=4.3  Score=33.69  Aligned_cols=100  Identities=19%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC----------C-CCCCCCCCeEEEEcchHHHHh
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG----------M-AVGLSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~----------~-~~~~~~~~~~~~~~d~~~~~~  125 (197)
                      ++|..||+|.=+  ++..+++. + ..|+.+|.+++.++.+++....          . ..........+ ..|. +.  
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~-G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~--  111 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV-G-ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KE--  111 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GG--
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HH--
Confidence            579999999733  33334444 3 6899999999888766542110          0 00001112233 4553 21  


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        -...|+||...+.    + .-....+++++...++|+.+++.++
T Consensus       112 --~~~aDlVIeaVpe----~-~~~k~~v~~~l~~~~~~~~ii~snT  150 (463)
T 1zcj_A          112 --LSTVDLVVEAVFE----D-MNLKKKVFAELSALCKPGAFLCTNT  150 (463)
T ss_dssp             --GTTCSEEEECCCS----C-HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --HCCCCEEEEcCCC----C-HHHHHHHHHHHHhhCCCCeEEEeCC
Confidence              2458999988752    1 1112567888889999988877644

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=88.00  E-value=3.9  Score=32.20  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=55.8

Q ss_pred             CCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEE
Q psy4592          58 PKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I  134 (197)
                      ..+|..+|+|.=+.+..  ++.. +...++.+|++++.++.....+...... .....++.. .|. +.+    ...|+|
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~~~l~~~~~~l~~~~~~-~~~~~~i~~t~d~-~al----~~aD~V   76 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVKNMPHGKALDTSHTNVM-AYSNCKVSGSNTY-DDL----AGADVV   76 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHTHHHH-HTCCCCEEEECCG-GGG----TTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhhhhh-cCCCcEEEECCCH-HHh----CCCCEE
Confidence            35899999975443332  2223 3235999999987666332222110000 011223333 554 222    347999


Q ss_pred             EECCCCCCCCC--------ccc------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         135 ITDSSDPVGPA--------ESL------FQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       135 ~~~~~~~~~~~--------~~l------~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.....+..+.        ..+      .-.+.++.+.+.. |++.+++.++.
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP  128 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP  128 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            98763322211        111      1144566666664 99998876543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.98  E-value=2.2  Score=34.16  Aligned_cols=69  Identities=25%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~D~  133 (197)
                      ..++||.+|||  .++..+++. .....++.+|.+.+-++.+++.            ...+..|+.+  .+...-...|+
T Consensus        15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~d~~d~~~l~~~~~~~Dv   80 (365)
T 3abi_A           15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF------------ATPLKVDASNFDKLVEVMKEFEL   80 (365)
T ss_dssp             -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT------------SEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc------------CCcEEEecCCHHHHHHHHhCCCE
Confidence            45689999985  333333321 1225789999999887766443            2233444432  22222356899


Q ss_pred             EEECCC
Q psy4592         134 IITDSS  139 (197)
Q Consensus       134 I~~~~~  139 (197)
                      |++..+
T Consensus        81 Vi~~~p   86 (365)
T 3abi_A           81 VIGALP   86 (365)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            998765

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.94  E-value=5.8  Score=29.22  Aligned_cols=95  Identities=20%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCcee
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFD  132 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D  132 (197)
                      ..+|+.+|+|  .++..+++..  ... ++++|.+++.++.++   .         .+.++.+|+.+  .+.. .-..+|
T Consensus         9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~---------~~~~i~gd~~~~~~l~~a~i~~ad   73 (234)
T 2aef_A            9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR---S---------GANFVHGDPTRVSDLEKANVRGAR   73 (234)
T ss_dssp             -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---T---------TCEEEESCTTCHHHHHHTTCTTCS
T ss_pred             CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---c---------CCeEEEcCCCCHHHHHhcCcchhc
Confidence            4589999986  4444444321  225 999999998776554   1         35678888763  2332 245789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      .|++..+.     ..  .........+.+.|+..++....++
T Consensus        74 ~vi~~~~~-----d~--~n~~~~~~a~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           74 AVIVDLES-----DS--ETIHCILGIRKIDESVRIIAEAERY  108 (234)
T ss_dssp             EEEECCSC-----HH--HHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred             EEEEcCCC-----cH--HHHHHHHHHHHHCCCCeEEEEECCH
Confidence            99976531     11  0223445566788887888766543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=87.83  E-value=7.2  Score=29.65  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             CCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------E  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~  126 (197)
                      ++.||..|++ |+++.++++.  ....+|+.++.+++-.+...+.+..     ...++.++.+|+.+.-.         .
T Consensus        44 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~d~~~v~~~~~~~~~  117 (285)
T 2c07_A           44 NKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-----FGYESSGYAGDVSKKEEISEVINKILT  117 (285)
T ss_dssp             SCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-----TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh-----cCCceeEEECCCCCHHHHHHHHHHHHH
Confidence            4578888775 4555555432  1236888888777665544444332     13467888888654211         1


Q ss_pred             cCCceeEEEECCCC
Q psy4592         127 HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ~~~~~D~I~~~~~~  140 (197)
                      ..+..|++|.+...
T Consensus       118 ~~~~id~li~~Ag~  131 (285)
T 2c07_A          118 EHKNVDILVNNAGI  131 (285)
T ss_dssp             HCSCCCEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence            12578999998753

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=87.81  E-value=3.3  Score=31.55  Aligned_cols=78  Identities=12%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      .++.+|..|++.| ++.++++.  ..+.+|+.++.+++..+.+.+.+..     ...++.++.+|+.+.      ...  
T Consensus        32 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           32 RGRTALVTGSSRG-IGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA-----SGGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH-----TTCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEecCCCHHHHHHHHHHHH
Confidence            4567888887654 55444432  1126899999887665555444332     234688888886532      111  


Q ss_pred             cCCceeEEEECCCC
Q psy4592         127 HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ~~~~~D~I~~~~~~  140 (197)
                      ..++.|++|.+.-.
T Consensus       106 ~~g~iD~lvnnAg~  119 (275)
T 4imr_A          106 AIAPVDILVINASA  119 (275)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            01578999998753

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=87.78  E-value=8.5  Score=30.12  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CCCeEEEEeCCchH--hHHHHhcCCCCccEE-EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGG--VAREVLKHPSVESAY-LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~--~~~~l~~~~~~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ++.+|..||||.=+  ....+....+..+++ .+|.+++..+.+.+.+.       .+   ....|..+.+..  ...|+
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g-------~~---~~~~~~~~~l~~--~~~D~   74 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELG-------VE---TTYTNYKDMIDT--ENIDA   74 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTC-------CS---EEESCHHHHHTT--SCCSE
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhC-------CC---cccCCHHHHhcC--CCCCE
Confidence            44689999998532  223333133445654 56999887655444322       11   223566665543  46899


Q ss_pred             EEECCC
Q psy4592         134 IITDSS  139 (197)
Q Consensus       134 I~~~~~  139 (197)
                      |+...+
T Consensus        75 V~i~tp   80 (346)
T 3cea_A           75 IFIVAP   80 (346)
T ss_dssp             EEECSC
T ss_pred             EEEeCC
Confidence            997664

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.77  E-value=7.7  Score=29.60  Aligned_cols=78  Identities=13%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++...+.+..     ...++.++.+|+.+.-.         
T Consensus        27 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~  100 (283)
T 3v8b_A           27 PSPVALITGAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVG-----AGGQAIALEADVSDELQMRNAVRDLV  100 (283)
T ss_dssp             CCCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4568888887654 55444432  1126899999998877766665543     23578888888764311         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ...++.|++|.+.-.
T Consensus       101 ~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A          101 LKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCCCEEEECCCC
Confidence            112479999988753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.65  E-value=3.5  Score=34.71  Aligned_cols=89  Identities=21%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             CCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..+++|+.+|+|.=+ .....++..+ .+|+++|.++...+.+++. .          .++  .+..+.+    ..+|+|
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~G-a~Viv~d~~~~~~~~A~~~-G----------a~~--~~l~e~l----~~aDvV  333 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQG-ARVSVTEIDPINALQAMME-G----------FDV--VTVEEAI----GDADIV  333 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-T----------CEE--CCHHHHG----GGCSEE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-C----------CEE--ecHHHHH----hCCCEE
Confidence            456899999986422 2222334344 5899999999887766542 1          121  2433433    358999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....     ...+..    .+..+.||+||+++...
T Consensus       334 i~atg-----t~~~i~----~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          334 VTATG-----NKDIIM----LEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             EECSS-----SSCSBC----HHHHHHSCTTCEEEECS
T ss_pred             EECCC-----CHHHHH----HHHHHhcCCCcEEEEeC
Confidence            98652     222222    34566789999887644

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.64  E-value=9  Score=31.73  Aligned_cols=107  Identities=15%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCC-------CCCCeEEEEcchHHHHhhcC
Q psy4592          59 KKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGL-------SDPRLTVHVGDGFRFMSEHQ  128 (197)
Q Consensus        59 ~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~  128 (197)
                      .+|..||+|.=+..  ..+++.+...+|+++|.+++.++..++...... .++       ...++.+ ..|..+.+.   
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~~---   81 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAIK---   81 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHHh---
Confidence            58999999854433  334444323689999999988776544211000 000       0012332 345444333   


Q ss_pred             CceeEEEECCCCCCCCC-------ccc-ccHHHHHHHHhhcCCCcEEEEE
Q psy4592         129 QEFDVIITDSSDPVGPA-------ESL-FQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~-------~~l-~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                       ..|+|+...+.+....       +.+ +..+..+.+.+.|++|..++..
T Consensus        82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~  130 (467)
T 2q3e_A           82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEK  130 (467)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEEC
T ss_pred             -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEEC
Confidence             3799999876544211       111 0145666777888887665543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=87.63  E-value=7.7  Score=29.45  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=46.4

Q ss_pred             CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEcC----------------HHHHHHHHhhcCCCCCCCCCCCeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEID----------------NRVIEVSKKYLPGMAVGLSDPRLTVH  116 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~  116 (197)
                      .++.+|..|++.| ++.++    ++.+  .+++.++.+                ++.++...+.+..     ...++.++
T Consensus        10 ~~k~~lVTGas~g-IG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~   81 (286)
T 3uve_A           10 EGKVAFVTGAARG-QGRSHAVRLAQEG--ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG-----HNRRIVTA   81 (286)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCC--CeEEEEeccccccccccccccccCCHHHHHHHHHHHhh-----cCCceEEE
Confidence            4568888888765 44443    3343  689999876                4444444443332     23578888


Q ss_pred             EcchHHHH------h---hcCCceeEEEECCCC
Q psy4592         117 VGDGFRFM------S---EHQQEFDVIITDSSD  140 (197)
Q Consensus       117 ~~d~~~~~------~---~~~~~~D~I~~~~~~  140 (197)
                      .+|+.+.-      .   ...++.|++|.+.-.
T Consensus        82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            88876421      1   112478999998753

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=87.62  E-value=7.2  Score=29.48  Aligned_cols=76  Identities=16%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEc-------------CHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEI-------------DNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      .++.+|..|++.| ++.++    ++.+  .+++.++.             +++-++...+....     ...++.++.+|
T Consensus        10 ~~k~~lVTGas~G-IG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D   81 (277)
T 3tsc_A           10 EGRVAFITGAARG-QGRAHAVRMAAEG--ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA-----ANRRIVAAVVD   81 (277)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH-----TTCCEEEEECC
T ss_pred             CCCEEEEECCccH-HHHHHHHHHHHcC--CEEEEEeccccccccccccccCHHHHHHHHHHHHh-----cCCeEEEEECC
Confidence            4568888887665 44443    3343  68989987             55555444333322     23468888888


Q ss_pred             hHHHHh------h---cCCceeEEEECCCC
Q psy4592         120 GFRFMS------E---HQQEFDVIITDSSD  140 (197)
Q Consensus       120 ~~~~~~------~---~~~~~D~I~~~~~~  140 (197)
                      +.+.-.      .   .-++.|++|.+.-.
T Consensus        82 ~~~~~~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           82 TRDFDRLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            764311      1   12578999998753

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.59  E-value=1.3  Score=35.30  Aligned_cols=97  Identities=15%  Similarity=0.070  Sum_probs=53.9

Q ss_pred             CCC-CeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHH----HHHHHhhcCCCCCCCCCCCeEEEE---cchHHHHh
Q psy4592          56 PNP-KKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRV----IEVSKKYLPGMAVGLSDPRLTVHV---GDGFRFMS  125 (197)
Q Consensus        56 ~~~-~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  125 (197)
                      +.+ .+||.+|+  |.|.++..+++..+ .+++++.-+++-    .+.+++. ..      ..-+....   .|..+.+.
T Consensus       165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~~~~l-Ga------~~vi~~~~~~~~~~~~~i~  236 (364)
T 1gu7_A          165 TPGKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPNLDEVVASLKEL-GA------TQVITEDQNNSREFGPTIK  236 (364)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCCTTHHHHHHHHHHH-TC------SEEEEHHHHHCGGGHHHHH
T ss_pred             CCCCcEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCccccHHHHHHHHhc-CC------eEEEecCccchHHHHHHHH
Confidence            456 89999996  35566667777655 566666544332    4455432 21      10111111   23222232


Q ss_pred             h----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         126 E----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .    ....+|+|+-...     .     .... .+.+.|+++|.+++..
T Consensus       237 ~~t~~~~~g~Dvvid~~G-----~-----~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          237 EWIKQSGGEAKLALNCVG-----G-----KSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHHHTCCEEEEEESSC-----H-----HHHH-HHHHTSCTTCEEEECC
T ss_pred             HHhhccCCCceEEEECCC-----c-----hhHH-HHHHHhccCCEEEEec
Confidence            2    1357999985542     1     2233 6789999999998764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=87.50  E-value=4.3  Score=30.75  Aligned_cols=109  Identities=11%  Similarity=0.064  Sum_probs=57.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEE-cCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVE-IDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------  125 (197)
                      .++.+|..|++.| ++.++++..  .+.+++.++ .+++..+...+.+..     ...++.++.+|+.+.-.        
T Consensus        26 ~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           26 TNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA-----AGGKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            4568888887665 444444321  125676664 344444444333322     13467888888764211        


Q ss_pred             -hcCCceeEEEECCCCCCCCCcccccH---------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 -EHQQEFDVIITDSSDPVGPAESLFQA---------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~~~~~~~~l~~~---------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                       ...++.|++|.+.-........-.+.               .+.+.+.+.++++|.++..+
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence             11247999999875322111000011               13456667778888877765

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=87.43  E-value=8.1  Score=30.42  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|..||+|.  ++..++   ...+ .+|+++|.++...+.+.+.           .+.+.  +..+.+.    ..|+
T Consensus       154 ~g~~vgIIG~G~--iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~-----------g~~~~--~l~e~l~----~aDv  213 (330)
T 2gcg_A          154 TQSTVGIIGLGR--IGQAIARRLKPFG-VQRFLYTGRQPRPEEAAEF-----------QAEFV--STPELAA----QSDF  213 (330)
T ss_dssp             TTCEEEEECCSH--HHHHHHHHHGGGT-CCEEEEESSSCCHHHHHTT-----------TCEEC--CHHHHHH----HCSE
T ss_pred             CCCEEEEECcCH--HHHHHHHHHHHCC-CEEEEECCCCcchhHHHhc-----------CceeC--CHHHHHh----hCCE
Confidence            356899999874  333333   2233 5899999876544433221           12322  5555554    3799


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      |+...+...... .+..    ++..+.|++|.+++ ++..
T Consensus       214 Vi~~vp~~~~t~-~~i~----~~~~~~mk~gailI-n~sr  247 (330)
T 2gcg_A          214 IVVACSLTPATE-GLCN----KDFFQKMKETAVFI-NISR  247 (330)
T ss_dssp             EEECCCCCTTTT-TCBS----HHHHHHSCTTCEEE-ECSC
T ss_pred             EEEeCCCChHHH-HhhC----HHHHhcCCCCcEEE-ECCC
Confidence            999876532211 2222    34556788887765 5433

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=87.38  E-value=1.4  Score=33.82  Aligned_cols=79  Identities=18%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---Hh------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---MS------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---~~------  125 (197)
                      .++.||..|++. +++.++++.  ..+.+|+.++.+++-.+.+.+.+...    ...++.++.+|+.+.   +.      
T Consensus        11 ~~k~vlITGas~-GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAVVTGGNK-GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS----NHENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----TCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEccCCCcHHHHHHHHHHH
Confidence            346788888765 455554432  11268999999987666555544321    234788888887543   11      


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ...+..|++|.+.-.
T Consensus        86 ~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence             112479999998753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=87.33  E-value=4.7  Score=30.23  Aligned_cols=78  Identities=9%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++.+|..|++.| ++.++++..  ...+++.++.+++-.+...+.+..     ...++.++.+|+.+.-.         
T Consensus        11 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A           11 NDAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ-----AGGKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             TTCEEEECSCSSH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            4567888887654 555444321  126899999998776655554432     23578888888764311         


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|+++.+.-.
T Consensus        85 ~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           85 DQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112478999998753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.31  E-value=8.4  Score=29.57  Aligned_cols=106  Identities=13%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~---  125 (197)
                      +++.+|.-|++.| ++.++++.  ..+.+|..++.+++.++.+.+.+.        .+...+.+|+.+.      +.   
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--------~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--------GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--------TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------CCeEEEEecCCCHHHHHHHHHHHH
Confidence            5678888887765 44444432  122799999999988776655442        2456677776532      11   


Q ss_pred             hcCCceeEEEECCCCCCC-CCcccccH--------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVG-PAESLFQA--------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~-~~~~l~~~--------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ..-++.|++|.|.-.... +-..+..+              ...+.+...|+.+|.++..+
T Consensus        99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A           99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            123579999988643221 11111101              13455567888888876654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=87.24  E-value=7.7  Score=29.03  Aligned_cols=106  Identities=13%  Similarity=0.191  Sum_probs=61.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      .++++|..|++.| ++.++++.  ....+++.++.+++-++...+.+.        .++.++.+|+.+.-.         
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--------PRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------CcceEEEccCCCHHHHHHHHHHHH
Confidence            4568888887654 44444432  112689999999887766555432        367788888664211         


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccH---------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQA---------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~---------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...++.|+++.+.-........-.+.               .+.+.+...++++|.++..+
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            11247999998864322111000011               13455566777788877654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=87.18  E-value=8.1  Score=29.26  Aligned_cols=81  Identities=12%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------h--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------E--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~--  126 (197)
                      .+++||..|++.| ++.++++.  ....+|+.++.+++-.+.+.+.+...+  ....++.++.+|+.+.-.      .  
T Consensus        10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--ANGGAIRYEPTDITNEDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--CSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            4568888887654 44444332  112689999999877665555443311  012368888888764311      1  


Q ss_pred             -cCCceeEEEECCCC
Q psy4592         127 -HQQEFDVIITDSSD  140 (197)
Q Consensus       127 -~~~~~D~I~~~~~~  140 (197)
                       ..++.|+++.+.-.
T Consensus        87 ~~~g~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence             12478999998753

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=87.07  E-value=5.5  Score=30.07  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEc-CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEI-DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--  125 (197)
                      .+++||..|++.| ++.++++.  ..+.+++.++. +++..+..++.+..     ...++.++.+|+.+.-      .  
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~  101 (271)
T 4iin_A           28 TGKNVLITGASKG-IGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE-----KGYKAAVIKFDAASESDFIEAIQTI  101 (271)
T ss_dssp             SCCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHH
Confidence            4568888887654 55444432  11268888887 55555554444332     2347888888875421      1  


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ...++.|++|.+.-.
T Consensus       102 ~~~~g~id~li~nAg~  117 (271)
T 4iin_A          102 VQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence             112479999998753

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=87.04  E-value=7.3  Score=30.66  Aligned_cols=106  Identities=22%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCeEEEEe-CCc-hHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc--chHHHHhhcCCce
Q psy4592          57 NPKKVLIVG-GGD-GGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG--DGFRFMSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG-~G~-G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~  131 (197)
                      ++.+|+.+| +|. |..... +.......+++.+|++++ ...+.......    ...++..+.+  |..+.+    ...
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~----~~~~v~~~~~t~d~~~al----~ga   77 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMD----TGAVVRGFLGQQQLEAAL----TGM   77 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSC----SSCEEEEEESHHHHHHHH----TTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhccc----ccceEEEEeCCCCHHHHc----CCC
Confidence            456899999 676 543333 333322257999999876 22222211110    1113433333  333323    347


Q ss_pred             eEEEECCCCCCCCC---cccc------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         132 DVIITDSSDPVGPA---ESLF------QASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       132 D~I~~~~~~~~~~~---~~l~------~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+|+.....+..+.   ..+.      ..++.+.+.+. .|++++++.++
T Consensus        78 DvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SN  126 (326)
T 1smk_A           78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISN  126 (326)
T ss_dssp             SEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS
T ss_pred             CEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECC
Confidence            99998765443221   1111      12334444443 58898888653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.00  E-value=6.7  Score=29.11  Aligned_cols=77  Identities=10%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--h------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--E------  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~------  126 (197)
                      ..++||..|++ |+++.++++..  ...+|+.++.+++-.+...+.+..     ...++.++.+|+.+.-.  .      
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~   85 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-----EGHDVSSVVMDVTNTESVQNAVRSVH   85 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence            34688888865 45555544321  126899999987765544433322     12468888888764211  1      


Q ss_pred             -cCCceeEEEECCC
Q psy4592         127 -HQQEFDVIITDSS  139 (197)
Q Consensus       127 -~~~~~D~I~~~~~  139 (197)
                       ..++.|++|.+..
T Consensus        86 ~~~~~id~vi~~Ag   99 (260)
T 3awd_A           86 EQEGRVDILVACAG   99 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence             1246899998864

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=86.99  E-value=7.8  Score=28.87  Aligned_cols=79  Identities=13%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch--HH------HHh-
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG--FR------FMS-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~--~~------~~~-  125 (197)
                      .++.+|..|++.| ++.++++.  ....+|+.++.+++-++.+.+.+...    ...++.++..|+  .+      ... 
T Consensus        11 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~   85 (252)
T 3f1l_A           11 NDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEE----TGRQPQWFILDLLTCTSENCQQLAQR   85 (252)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----HSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----cCCCceEEEEecccCCHHHHHHHHHH
Confidence            4568888887654 44444432  11268999999987766554443221    123567777776  21      111 


Q ss_pred             --hcCCceeEEEECCCC
Q psy4592         126 --EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 --~~~~~~D~I~~~~~~  140 (197)
                        ...++.|++|.+.-.
T Consensus        86 ~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           86 IAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHCSCCSEEEECCCC
T ss_pred             HHHhCCCCCEEEECCcc
Confidence              123579999998753

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=86.97  E-value=2.1  Score=43.05  Aligned_cols=99  Identities=12%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC-eEEEEcchHHHHhh-c-CCc
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR-LTVHVGDGFRFMSE-H-QQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~-~-~~~  130 (197)
                      +.+.+||..|+  |.|..+..+++..+ .+|++++-+++-.+.+++.+...    .... +.....+..+.+.. . ...
T Consensus      1666 ~~Ge~VLI~gaaGgVG~aAiqlAk~~G-a~Viat~~s~~k~~~l~~~~~~l----ga~~v~~~~~~~~~~~i~~~t~g~G 1740 (2512)
T 2vz8_A         1666 QPGESVLIHSGSGGVGQAAIAIALSRG-CRVFTTVGSAEKRAYLQARFPQL----DETCFANSRDTSFEQHVLRHTAGKG 1740 (2512)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTC----CSTTEEESSSSHHHHHHHHTTTSCC
T ss_pred             CCCCEEEEEeCChHHHHHHHHHHHHcC-CEEEEEeCChhhhHHHHhhcCCC----CceEEecCCCHHHHHHHHHhcCCCC
Confidence            56689999974  55666677777655 68999999998888888754321    1111 11111233333322 2 246


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+|+-..           ..+.++...+.|+++|.++..
T Consensus      1741 vDvVld~~-----------g~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1741 VDLVLNSL-----------AEEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             EEEEEECC-----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECC-----------CchHHHHHHHhcCCCcEEEEe
Confidence            99998533           145788999999999998865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.88  E-value=3.3  Score=31.31  Aligned_cols=95  Identities=12%  Similarity=-0.011  Sum_probs=55.4

Q ss_pred             CeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++||..|+  |.++..+.+..  ...+|+++.-++.-.+....           .+++++.+|..+ +.  ...+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~D~~d-~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-----------SGAEPLLWPGEE-PS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-----------TTEEEEESSSSC-CC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-----------CCCeEEEecccc-cc--cCCCCEEEE
Confidence            58999994  77776665421  22689999988765443322           357888888766 22  457899998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .........+  .+..+++.+.+.-..-..+++.+
T Consensus        70 ~a~~~~~~~~--~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           70 STAPDSGGDP--VLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CCCCBTTBCH--HHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             CCCccccccH--HHHHHHHHHHhhcCCceEEEEee
Confidence            7653222211  12345554444312224555443

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.69  E-value=8.4  Score=28.92  Aligned_cols=77  Identities=14%  Similarity=0.067  Sum_probs=49.1

Q ss_pred             CCCeEEEEeCCc----hH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h
Q psy4592          57 NPKKVLIVGGGD----GG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S  125 (197)
Q Consensus        57 ~~~~vLdiG~G~----G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~  125 (197)
                      +++.+|.-|+++    |. ++..+++.+  .+|..++.+++..+.+.+.+...    ...++.++.+|+.+.-      .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~G--a~Vvi~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~   78 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLG--AKLVFTYRKERSRKELEKLLEQL----NQPEAHLYQIDVQSDEEVINGFE   78 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHGGG----TCSSCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc----CCCcEEEEEccCCCHHHHHHHHH
Confidence            567899999643    32 334444453  78999999987776666554432    2346788888865321      1


Q ss_pred             ---hcCCceeEEEECCC
Q psy4592         126 ---EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ---~~~~~~D~I~~~~~  139 (197)
                         ..-++.|+++.|.-
T Consensus        79 ~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           79 QIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHHHHHCCCSEEEECCC
T ss_pred             HHHHHhCCCCEEEeccc
Confidence               12357999998864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=86.59  E-value=8.7  Score=29.50  Aligned_cols=77  Identities=12%  Similarity=0.186  Sum_probs=45.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcC------------HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEID------------NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      .++.+|..|++.| ++.++++.  ..+.+++.++.+            ++-++...+.+..     ...++.++.+|+.+
T Consensus        27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~  100 (299)
T 3t7c_A           27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA-----LGRRIIASQVDVRD  100 (299)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH-----TTCCEEEEECCTTC
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh-----cCCceEEEECCCCC
Confidence            4568888888765 44444331  112689899876            4444443333322     23478888888764


Q ss_pred             HHh------h---cCCceeEEEECCC
Q psy4592         123 FMS------E---HQQEFDVIITDSS  139 (197)
Q Consensus       123 ~~~------~---~~~~~D~I~~~~~  139 (197)
                      .-.      .   .-++.|++|.+.-
T Consensus       101 ~~~v~~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          101 FDAMQAAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            211      1   1247899998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	2e-61
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	2e-56
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	1e-52
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	7e-51
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	1e-49
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	4e-48
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	1e-46
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	6e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	1e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	3e-04
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	9e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.003
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.003

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  191 bits (486), Expect = 2e-61
 Identities = 103/200 (51%), Positives = 136/200 (68%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SLQV++  +   S            +G  L+LDGI+Q TE DEFSY EM+A LP+ 
Sbjct: 43  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 102

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HP+PK+VLI+GGGDGG+ REVLKH SVE   + EID  VI+V+KK+LPGM+ G S P+L
Sbjct: 103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 162

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            +  GDGF F+  H+ EFDVIITDSSDPVGPAESLF  SY+EL+  AL+  GI+ SQ  +
Sbjct: 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222

Query: 174 LWYSLDCVGNTLQHCASVFP 193
           +W  L  + + +     +FP
Sbjct: 223 VWLHLPLIAHLVAFNRKIFP 242

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (451), Expect = 2e-56
 Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G +LSLQVE+  +   S          K +G  L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 15  GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 74

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           SHPNP+KVLI+GGGDGGV REV+KHPSVES    EID  VI+VSKK+LPGMA+G S  +L
Sbjct: 75  SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 134

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
           T+HVGDGF FM ++Q  FDVIITDSSDP+GPAESLF+ SY++LM  AL+  G++C Q   
Sbjct: 135 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W  LD +    Q C S+FP
Sbjct: 195 QWLHLDLIKEMRQFCQSLFP 214

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  168 bits (426), Expect = 1e-52
 Identities = 92/201 (45%), Positives = 134/201 (66%), Gaps = 9/201 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G + SL+VE+  +   S            +G  L+LDG+IQ TE DE +Y EMI  LPLC
Sbjct: 17  GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 76

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           S PNPKKVL++GGGDGGV REV +H S+E   + EID  V++VSK++ P +A+G  DPR+
Sbjct: 77  SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV 136

Query: 114 TVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + +GDG  F+    +  +D +I DSSDP+GPA+ LF+  +F+ ++RALRPGG+VC+QA 
Sbjct: 137 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196

Query: 173 TLWYSLDCVGNTLQHCASVFP 193
           +LW  +D + + + +C  +F 
Sbjct: 197 SLWLHMDIIEDIVSNCREIFK 217

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score =  163 bits (413), Expect = 7e-51
 Identities = 84/200 (42%), Positives = 130/200 (65%), Gaps = 8/200 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
              ++++V +  +   +          +EFG  L LDG++  +E DEF Y EM+A +PL 
Sbjct: 12  NFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLF 71

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
           +HPNP+ VL+VGGGDGGV RE+LKHPSV+ A LV+ID +VIE SKK+LP +A  L DPR+
Sbjct: 72  THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV 131

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
            V V DGF  +++ + ++DVI+ DS++PVGPA +LF   ++  +++AL+  GI  +Q   
Sbjct: 132 DVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191

Query: 174 LWYSLDCVGNTLQHCASVFP 193
            W++ + + N  +    +FP
Sbjct: 192 PWFTPELITNVQRDVKEIFP 211

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score =  160 bits (406), Expect = 1e-49
 Identities = 78/201 (38%), Positives = 109/201 (54%), Gaps = 9/201 (4%)

Query: 2   GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
            V L +++    Y   S           + G    LDGI   TE DEF Y EM+A +P+ 
Sbjct: 26  NVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMF 85

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
            HPNPKKVLI+GGGDGG  REVLKH SVE A L E+D  VIE ++KYL   + G  DPR 
Sbjct: 86  LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA 145

Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDP-VGPAESLFQASYFELMSRALRPGGIVCSQAG 172
            + + +G  ++ + + EFDVII DS+DP  G    LF   +++    AL+  G+  ++  
Sbjct: 146 EIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205

Query: 173 TLWYSLDCVGNTLQHCASVFP 193
             +Y +       +  + VFP
Sbjct: 206 DPFYDIGWFKLAYRRISKVFP 226

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  157 bits (397), Expect = 4e-48
 Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 12/199 (6%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
             +L  ++E       +          K FG  LILD  +Q TE DE+ Y E +    + 
Sbjct: 14  YETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAML 73

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL-SDPR 112
           +HP PK+VLIVGGG+G   REVLKHP+VE A +V+ID  ++EV+K+++P    G   DPR
Sbjct: 74  THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR 133

Query: 113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVG---PAESLFQASYFELMSRALRPGGIVCS 169
             + + D   ++   ++ +DV+I D +DPVG   PA  L+   ++ L+   L PGG++  
Sbjct: 134 AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193

Query: 170 QAGTLWYSLDCVGNTLQHC 188
           Q G +  +   V   +   
Sbjct: 194 QTGMILLTHHRVHPVVHRT 212

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  152 bits (385), Expect = 1e-46
 Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 16/210 (7%)

Query: 2   GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
           G  ++ ++++  Y   S          + FG  L LDG +Q     E SY E +    + 
Sbjct: 9   GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 68

Query: 54  SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP------GMAVG 107
           +HP PK+VL++GGGDGG  REVL+H  V+   +VEID  VI VSK  +          + 
Sbjct: 69  AHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN 127

Query: 108 LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
               +  + +GDGF F+  ++  FDVII DS+DPVGPA+ LF   ++  +  AL   GI 
Sbjct: 128 GKHEKAKLTIGDGFEFIKNNRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY 186

Query: 168 CSQAGTLWYSLDCVGNTLQHCASVFPRLHC 197
            +QAG+++   D + +  +    VF R++ 
Sbjct: 187 VTQAGSVYLFTDELISAYKEMKKVFDRVYY 216

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 13/130 (10%)

Query: 42  SYSEMIAFLPLCSHPNP-KKVLIVGGGDGGVAREVLKHPSVE-SAYLVEIDNRVIEVSKK 99
            Y +  A +       P  +VL  G G G +   +L+           E      E +++
Sbjct: 80  IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR 139

Query: 100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSR 159
            + G      D    + V D            D  + D   P             + +SR
Sbjct: 140 NVSGCYGQPPD-NWRLVVSDLA-DSELPDGSVDRAVLDMLAPW---------EVLDAVSR 188

Query: 160 ALRPGGIVCS 169
            L  GG++  
Sbjct: 189 LLVAGGVLMV 198

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 53  CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR 112
            +     +VL VG G    A +V + P ++  +++E ++ V +  + + P          
Sbjct: 49  AASSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH---KVI 104

Query: 113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
               + +             ++            +           R L+PGG++ 
Sbjct: 105 PLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 12/128 (9%)

Query: 49  FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
            L L       +VL V  G G  +  +++     S   V+  +++++ + K         
Sbjct: 48  LLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEP 105

Query: 109 SDPRLTVHVGDGFRF---MSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELMSRA 160
           +  +  +   +       +        VI   +S     D  G       A   + ++  
Sbjct: 106 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLA--LKNIASM 163

Query: 161 LRPGGIVC 168
           +RPGG++ 
Sbjct: 164 VRPGGLLV 171

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 18/96 (18%)

Query: 28  ILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLV 87
           + + I    +                 HP   KVL +  G G  +             L+
Sbjct: 25  VYNKIFDKLDLT-----------KTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLL 73

Query: 88  EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF 123
           E  + + +                 L +   D + +
Sbjct: 74  EKRSSLYKFLNAKFE-------GSPLQILKRDPYDW 102

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 14/139 (10%)

Query: 37  EFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV 96
           E      ++MI  + +    +    + +G G G V  +V    + +  Y VE  +   + 
Sbjct: 134 ETSFDLVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY 190

Query: 97  SKKYLPGM-----AVGLSDPRLTVHVGDGFRF-MSEHQQEFDVIITDSSDPVGPAESLFQ 150
           ++             G      T+  GD       E      VI  ++      A     
Sbjct: 191 AETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-----AFGPEV 245

Query: 151 ASYFELMSRALRPGGIVCS 169
               +     ++ GG + S
Sbjct: 246 DHQLKERFANMKEGGRIVS 264

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 18/120 (15%)

Query: 59  KKVLIVGGGDGGVAREVLKHPSVE-SAYLVEIDNRVIEVSKKYLPGM-------AVGLSD 110
             VL  G G GG++  + K    +      E+     +++KK             V    
Sbjct: 100 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159

Query: 111 PRLTVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
             +     D      + +   FD +  D  +P              +    L+ GG+   
Sbjct: 160 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAV 210

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 46  MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA 105
           M+  L L      K++L++GGG+  V    L         L+    ++  VS      + 
Sbjct: 1   MVKSLQLAHQLKDKRILLIGGGE--VGLTRLYK-------LMPTGCKLTLVSPDLHKSII 51

Query: 106 VGLSDPRLTVHVGDGFRFMSEHQQE 130
                        D           
Sbjct: 52  PKFGKFIQNKDQPDYREDAKRFINP 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	100.0
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	100.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	100.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	100.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	100.0
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	100.0
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.8
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.76
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.75
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.73
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.73
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.72
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.72
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.72
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.71
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.71
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.71
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.7
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.69
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.68
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.68
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.68
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.67
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.67
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.67
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.67
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.67
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.65
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.63
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.62
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.61
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.61
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.61
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.58
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.57
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.57
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.57
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.56
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.56
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.53
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.52
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.52
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.51
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.49
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.48
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.46
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.46
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.46
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.44
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.42
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.42
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.39
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.38
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.35
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.3
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.27
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.26
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.17
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.09
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.0
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.98
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.97
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.96
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.95
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.92
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.87
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.82
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.79
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.76
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.7
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.67
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.61
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.56
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.56
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.54
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.52
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.43
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.72
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.68
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.65
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.61
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.59
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.44
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.41
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.35
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.16
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.15
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.08
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.05
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.78
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.77
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.74
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.56
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.55
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.47
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.42
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.31
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.29
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.26
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.23
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.21
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.14
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.04
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.45
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.37
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.35
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.63
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.57
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.39
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.32
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.21
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.62
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.19
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.18
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.07
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.03
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.95
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.94
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.78
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.74
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.74
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.69
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.59
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.51
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.41
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.24
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.45
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.43
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.32
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.23
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.11
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.94
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	90.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.83
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.77
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.52
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.42
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.23
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.12
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	90.09
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.05
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.03
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.96
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.89
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.62
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	89.08
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	88.7
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.64
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.27
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.85
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.35
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.23
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.96
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	86.93
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.84
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.59
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.3
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.23
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.96
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	85.93
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.85
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.7
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	85.43
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	85.34
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.98
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.91
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.72
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	84.34
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	84.25
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	84.0
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.89
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	83.78
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.73
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	83.36
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	83.24
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	82.97
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	82.86
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.74
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.38
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	82.36
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	82.2
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	81.93
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	81.31
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.99
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	80.98
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	80.63
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.46
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	80.43
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.32
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	80.11

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=8.1e-36  Score=235.71  Aligned_cols=195  Identities=53%  Similarity=0.956  Sum_probs=171.0

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..+++++++|++++|+        +..||+.|++||.+|++..+++.|++++.|++++.+++|++||.||.|.|+.+.
T Consensus        43 g~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~r  122 (312)
T d2b2ca1          43 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILR  122 (312)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHH
T ss_pred             CceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHH
Confidence            778999999999999999        678999999999999999999999999999999889999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..++++||+|+++++.++++++.+...++.++++++.+|+++++....++||+|++|.+.+..+...|++.+|
T Consensus       123 ellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eF  202 (312)
T d2b2ca1         123 EVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSY  202 (312)
T ss_dssp             HHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------H
T ss_pred             HHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHH
Confidence            99998777899999999999999999998765556779999999999999998788999999999988888888999999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|||++++++.+++...+.+..++++++++||+|.
T Consensus       203 y~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~  245 (312)
T d2b2ca1         203 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVT  245 (312)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEE
Confidence            9999999999999999999999988999999999999999875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-35  Score=232.36  Aligned_cols=195  Identities=40%  Similarity=0.727  Sum_probs=173.2

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|+++.|+        +..||+.|++||.+|++..+++.|++++.+++++.+++|++||.||+|.|+.+.
T Consensus        26 ~~~~~~~v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r  105 (295)
T d1inla_          26 NVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR  105 (295)
T ss_dssp             SEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHH
T ss_pred             CceEEEEEEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCceEEEecCCchHHHH
Confidence            677899999999999999        778999999999999999999999999999999889999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCC-CCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPV-GPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~-~~~~~l~~~~  152 (197)
                      ++++..+..++++||+||++++.|+++++.+...+++++++++.+|+++++....++||+|++|.+.+. .+...|++.+
T Consensus       106 ~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~e  185 (295)
T d1inla_         106 EVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEE  185 (295)
T ss_dssp             HHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHH
T ss_pred             HHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHH
Confidence            999987778999999999999999999865433456789999999999999987889999999998875 4566899999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      |++.+++.|+|||++++++.+++...+.++.++++++++||+|+
T Consensus       186 fy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~  229 (295)
T d1inla_         186 FYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR  229 (295)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeE
Confidence            99999999999999999999999889999999999999999885

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.6e-35  Score=227.71  Aligned_cols=195  Identities=43%  Similarity=0.836  Sum_probs=180.5

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |.+.+++++++|+++.|+        +..+|+.|++||.+|+...+++.|++++.+.+++.++++++||.||.|.|..+.
T Consensus        12 ~~~~~~~i~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~   91 (274)
T d1iy9a_          12 NFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIR   91 (274)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHH
T ss_pred             CceEEEEEeeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEecCCCCcHHHH
Confidence            567899999999999998        667899999999999999999999999999999888999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..++++||+||++++.|+++++.+.+.+++++++++.+|+++++....++||+|++|.+.+..+...|++.+|
T Consensus        92 ~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF  171 (274)
T d1iy9a_          92 EILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGF  171 (274)
T ss_dssp             HHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHH
T ss_pred             HHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHH
Confidence            99998777899999999999999999986544445778999999999999998888999999999998888888999999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.++++|+|+|+++.++.+++...+.++.++++++++||+|+
T Consensus       172 y~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~  214 (274)
T d1iy9a_         172 YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITK  214 (274)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceE
Confidence            9999999999999999999998888999999999999999975

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=230.04  Aligned_cols=195  Identities=62%  Similarity=1.046  Sum_probs=170.7

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..+|+.|++||.+|+...+++.|++++.+.+++.+++|++||.||.|.|..+.
T Consensus        15 ~~~~~~~~~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~   94 (285)
T d2o07a1          15 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLR   94 (285)
T ss_dssp             TEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHH
T ss_pred             CceEEEEEeeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHH
Confidence            678899999999999999        677999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY  153 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~  153 (197)
                      ++++..+..++++||+||++++.|+++++.+...+.+++++++.+|+++++....++||+|++|.+.+..+...|++.+|
T Consensus        95 ~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF  174 (285)
T d2o07a1          95 EVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESY  174 (285)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHH
T ss_pred             HHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHH
Confidence            99988777899999999999999999986433334678999999999999988778999999999988887888999999


Q ss_pred             HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      ++.+++.|+|||++++++.++....+.++.+.++++++||+|+
T Consensus       175 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~  217 (285)
T d2o07a1         175 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVA  217 (285)
T ss_dssp             HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeee
Confidence            9999999999999999999988888999999999999999985

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.6e-34  Score=225.44  Aligned_cols=195  Identities=47%  Similarity=0.928  Sum_probs=179.4

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |+..+++++++|++++|+        +..||+.|++||.+|++..+++.|++++.+++++.+++|++||.||.|.|+.+.
T Consensus        17 ~~~~~~~v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r   96 (290)
T d1xj5a_          17 GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLR   96 (290)
T ss_dssp             TEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHH
T ss_pred             CceEEEEEeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcceEEecCCchHHHH
Confidence            677899999999999998        667999999999999999999999999999999889999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHH
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQAS  152 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~  152 (197)
                      ++++..+..++++||+||++++.++++++.+...+++++++++.+|+.+++... .++||+|++|.+.+..+...|++.+
T Consensus        97 ~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~e  176 (290)
T d1xj5a_          97 EVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKP  176 (290)
T ss_dssp             HHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHH
T ss_pred             HHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHH
Confidence            999987777999999999999999999865433346789999999999999764 4589999999999888888999999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      |++.+++.|+|||++++++.+++...+.++.++++++++||++.
T Consensus       177 F~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~  220 (290)
T d1xj5a_         177 FFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSV  220 (290)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccce
Confidence            99999999999999999999998889999999999999999874

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.3e-33  Score=222.09  Aligned_cols=195  Identities=35%  Similarity=0.630  Sum_probs=170.4

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..||+.|++||.+|+...+++.|++++.+++++.++++++||.||+|.|+.+.
T Consensus        14 ~~~~~~~~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~   93 (312)
T d1uira_          14 YETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLR   93 (312)
T ss_dssp             SEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred             CceEEEEEEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceEEEeCCCchHHHH
Confidence            456789999999999999        777999999999999999999999999999998888999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC---CCcccc
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG---PAESLF  149 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~---~~~~l~  149 (197)
                      ++++..+..++++||+||++++.|+++++.+. +.+++++++++.+|+++++....++||+|++|.+.+..   +...|+
T Consensus        94 ~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~  173 (312)
T d1uira_          94 EVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLY  173 (312)
T ss_dssp             HHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGS
T ss_pred             HHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhh
Confidence            99988777899999999999999999985432 22456899999999999998877899999999977553   445689


Q ss_pred             cHHHHHHHHhhcCCCcEEEEEcCCCCcC-hhHHHHHHHHHHhhCCccc
Q psy4592         150 QASYFELMSRALRPGGIVCSQAGTLWYS-LDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       150 ~~~~~~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~f~~v~  196 (197)
                      +.+|++.++++|+|||++++++.++... .+..+.+.++++++|++|.
T Consensus       174 t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~  221 (312)
T d1uira_         174 TVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR  221 (312)
T ss_dssp             SHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEE
T ss_pred             hHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEE
Confidence            9999999999999999999998776553 3456777899999999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4e-32  Score=212.68  Aligned_cols=193  Identities=37%  Similarity=0.651  Sum_probs=169.7

Q ss_pred             cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592           2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR   73 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~   73 (197)
                      |...+++++++|++++|+        +..+|+.|++||.+|++..+++.|++++.++++..++++++||.||+|.|..+.
T Consensus         9 ~~~~~~~~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~   88 (276)
T d1mjfa_           9 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVR   88 (276)
T ss_dssp             GEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHH
T ss_pred             CceEEEEEeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCCchHHHH
Confidence            677899999999999998        677999999999999999999999999999888888999999999999999999


Q ss_pred             HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC------CCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcc
Q psy4592          74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV------GLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAES  147 (197)
Q Consensus        74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~  147 (197)
                      ++++... .++++||+||++++.|+++++....      ....++++++++|+..++.. .++||+|++|.+.+..+...
T Consensus        89 ~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~~~~~~~  166 (276)
T d1mjfa_          89 EVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKV  166 (276)
T ss_dssp             HHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----
T ss_pred             HHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCCCCCccc
Confidence            9888644 6999999999999999998864311      12467999999999999875 57899999999998888888


Q ss_pred             cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592         148 LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH  196 (197)
Q Consensus       148 l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~  196 (197)
                      |++.+|++.+++.|+|||++++++.+++...+.+..++++++++|++|.
T Consensus       167 L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~  215 (276)
T d1mjfa_         167 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVY  215 (276)
T ss_dssp             TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred             ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeE
Confidence            9999999999999999999999998888888899999999999999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=1e-19  Score=137.74  Aligned_cols=105  Identities=19%  Similarity=0.313  Sum_probs=88.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..  .+++++|+|+++++.|++++...    ..+++++.++|+.+ ++.+.++||+|+
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~----~~~~i~~~~~d~~~-l~~~~~~fD~v~   86 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQ-MPFTDERFHIVT   86 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-C-CCSCTTCEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc----cccccccccccccc-cccccccccccc
Confidence            566899999999999999998775  68999999999999999886542    34689999999876 455568999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+++    ..++++++++|||||++++..
T Consensus        87 ~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          87 CRIAAHHFPNP----ASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccCCH----HHHHHHHHHhcCCCcEEEEEe
Confidence            99887777665    789999999999999998853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.4e-19  Score=137.67  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..  .++++||+|+.|++.|+++....    ..+++.++++|+.+ ++..+++||+|+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~----~~~~~~~~~~d~~~-~~~~~~~fD~v~   87 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK----GVENVRFQQGTAES-LPFPDDSFDIIT   87 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH----TCCSEEEEECBTTB-CCSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccc----cccccccccccccc-ccccccccceee
Confidence            677899999999999999998875  68999999999999999886542    23579999999876 455578999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+++    ..++++++++|||||++++..
T Consensus        88 ~~~~l~~~~d~----~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          88 CRYAAHHFSDV----RKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeceeecccCH----HHHHHHHHHeeCCCcEEEEEE
Confidence            98887777665    789999999999999988853

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=2.9e-19  Score=132.44  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=95.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||+|||+|.++..+++..  .+++++|+|+.+++.+++++...  ++...++++..+|..+.+  .+++||+|+
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~--~l~~~~i~~~~~d~~~~~--~~~~fD~Ii  124 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLN--NLDNYDIRVVHSDLYENV--KDRKYNKII  124 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT--TCTTSCEEEEECSTTTTC--TTSCEEEEE
T ss_pred             CCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHh--CCccceEEEEEcchhhhh--ccCCceEEE
Confidence            567899999999999999988765  58999999999999999986542  234567999999986533  357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      ++++.+...+.   ..++++++.+.|||||.+++....    ....+.+...+++.|.++
T Consensus       125 ~~~p~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~----~~~~~~~~~~l~~~f~~~  177 (194)
T d1dusa_         125 TNPPIRAGKEV---LHRIIEEGKELLKDNGEIWVVIQT----KQGAKSLAKYMKDVFGNV  177 (194)
T ss_dssp             ECCCSTTCHHH---HHHHHHHHHHHEEEEEEEEEEEES----THHHHHHHHHHHHHHSCC
T ss_pred             EcccEEecchh---hhhHHHHHHHhcCcCcEEEEEEeC----cCCHHHHHHHHHHhCCcE
Confidence            99987665332   267899999999999998875433    122334444555555554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=3.1e-18  Score=125.98  Aligned_cols=120  Identities=19%  Similarity=0.305  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++.+|||+|||+|.++.++++..  .+++++|+++++++.|++++...  ++ .++++++++|+.+.+.. ..+||.|
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~--gl-~~~v~~~~gda~~~~~~-~~~~D~v  104 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH--GL-GDNVTLMEGDAPEALCK-IPDIDIA  104 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT--TC-CTTEEEEESCHHHHHTT-SCCEEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHc--CC-CcceEEEECchhhcccc-cCCcCEE
Confidence            3567899999999999999988764  58999999999999999997653  22 35899999999886543 5789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +++...+.       ..++++.+.+.|||||++++....    .+......+.++..
T Consensus       105 ~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~----~e~~~~~~~~l~~~  150 (186)
T d1l3ia_         105 VVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAIL----LETKFEAMECLRDL  150 (186)
T ss_dssp             EESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECB----HHHHHHHHHHHHHT
T ss_pred             EEeCcccc-------chHHHHHHHHHhCcCCEEEEEeec----cccHHHHHHHHHHc
Confidence            99875321       267899999999999999986432    34455555566554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.1e-19  Score=134.29  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||||||+|.++..+++..+ +++++||+|+.+++.|+++....  ++ .++++++.+|+.+..  .+++||+|+
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~--gl-~~~v~~~~~d~~~~~--~~~~fD~v~  105 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL--GV-SERVHFIHNDAAGYV--ANEKCDVAA  105 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT--TC-TTTEEEEESCCTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHh--hc-cccchhhhhHHhhcc--ccCceeEEE
Confidence            5668999999999999999887655 79999999999999999876542  22 357999999998752  357899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||++++..
T Consensus       106 ~~~~~~~~~d~----~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         106 CVGATWIAGGF----AGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EESCGGGTSSS----HHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEehhhccCCH----HHHHHHHHHHcCcCcEEEEEe
Confidence            98877666654    789999999999999999864

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=1.2e-17  Score=124.44  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEEC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITD  137 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~  137 (197)
                      ..|||||||+|..+..+++..|...++|||+++.++..|.++....    ..+|+.++.+|+...... ..+++|.|++.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~----~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS----EAQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS----CCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH----hccCchhcccchhhhhcccCchhhhccccc
Confidence            3899999999999999998888899999999999999888776542    346899999999887643 46789999999


Q ss_pred             CCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         138 SSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       138 ~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+.|+...    ..+.++++++.+.++|||||.|.+.+..
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~  146 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            98887532    3466789999999999999999997654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=130.42  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I  134 (197)
                      +.+.+|||||||+|.++..+++..+ .++++||+||.+++.|++++..     ...++.++.+|+...... ..++||.|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-----cccccccccccccccccccccccccce
Confidence            5678999999999999999988754 6899999999999999998765     345788889998775544 46799999


Q ss_pred             EECCCCCCCCCccc-ccHHHHHHHHhhcCCCcEEEEE
Q psy4592         135 ITDSSDPVGPAESL-FQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       135 ~~~~~~~~~~~~~l-~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.|.........++ ....++++++++|||||+|++.
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            99886543322222 2267999999999999999874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.3e-18  Score=130.81  Aligned_cols=106  Identities=22%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++..+|||||||+|.++..+++..  .+++++|+|++|++.|+++...     ...++.++++|+.+ ++...++||+|+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~--~~v~giD~S~~~i~~ak~~~~~-----~~~~~~~~~~d~~~-l~~~~~~fD~I~  107 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKS-----RESNVEFIVGDARK-LSFEDKTFDYVI  107 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCCEEEECCTTS-CCSCTTCEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhh--cccccccccccchhhhhhhhcc-----cccccccccccccc-ccccCcCceEEE
Confidence            455799999999999999998764  6899999999999999987654     23567889999876 355568999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++..  ...+++++.++|||||.+++..
T Consensus       108 ~~~~l~~~~~~d--~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         108 FIDSIVHFEPLE--LNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             EESCGGGCCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EecchhhCChhH--HHHHHHHHHHHcCcCcEEEEEE
Confidence            987766554322  1578999999999999998864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=1.5e-18  Score=132.98  Aligned_cols=124  Identities=19%  Similarity=0.282  Sum_probs=98.5

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      +..+++.+|||+|||+|+++..+++. .+..+++++|.++++++.|++++....   ...++++..+|+.+.++  .++|
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~~~~--~~~f  155 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFIS--DQMY  155 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCCC--SCCE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeecccc--ccee
Confidence            33467789999999999999998874 455799999999999999999986532   34689999999876543  4689


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPR  194 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~  194 (197)
                      |.|++|.+.++         ++++++.++|||||++++++.+    .+++.+....+++. |.+
T Consensus       156 D~V~ld~p~p~---------~~l~~~~~~LKpGG~lv~~~P~----i~Qv~~~~~~l~~~gf~~  206 (250)
T d1yb2a1         156 DAVIADIPDPW---------NHVQKIASMMKPGSVATFYLPN----FDQSEKTVLSLSASGMHH  206 (250)
T ss_dssp             EEEEECCSCGG---------GSHHHHHHTEEEEEEEEEEESS----HHHHHHHHHHSGGGTEEE
T ss_pred             eeeeecCCchH---------HHHHHHHHhcCCCceEEEEeCC----cChHHHHHHHHHHCCCce
Confidence            99999886432         4789999999999999987543    46777788877765 543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=2.7e-18  Score=134.01  Aligned_cols=107  Identities=22%  Similarity=0.320  Sum_probs=88.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||||||+|.++..+++..+ .+|++||+++.+++.|+++....  ++ .++++++++|+.+. +.+.++||+|+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~--gl-~~~v~~~~~d~~~l-~~~~~sfD~V~  140 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA--GL-ADNITVKYGSFLEI-PCEDNSYDFIW  140 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH--TC-TTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhcccccc--cc-cccccccccccccc-cccccccchhh
Confidence            5668999999999999999887644 68999999999999999876532  22 35899999998773 55568999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++.    ..++++++++|||||.+++..
T Consensus       141 ~~~~l~h~~d~----~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         141 SQDAFLHSPDK----LKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             EESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhhccCH----HHHHHHHHHhcCCCcEEEEEE
Confidence            98776666554    789999999999999998864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=7e-18  Score=129.61  Aligned_cols=145  Identities=19%  Similarity=0.101  Sum_probs=97.7

Q ss_pred             EEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC
Q psy4592          26 ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA  105 (197)
Q Consensus        26 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~  105 (197)
                      .+.+|--+.+.++...+..-++..+... .+++++|||+|||+|.++..+++.+  .+++++|+|+.+++.|+++...  
T Consensus        90 ~i~i~pg~aFGTG~H~TT~l~l~~l~~~-~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~--  164 (254)
T d2nxca1          90 PLVIEPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR--  164 (254)
T ss_dssp             EEECCCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH--
T ss_pred             EEEEccccccCccccchhhHHHHHHHhh-cCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHH--
Confidence            3455544444444433333344444322 3567899999999999999888764  5899999999999999998765  


Q ss_pred             CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         106 VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       106 ~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                         ++.+.++.++|+.+..+  .++||+|+++...+    .   ..++++.+.++|||||+++++...    .+....+.
T Consensus       165 ---n~~~~~~~~~d~~~~~~--~~~fD~V~ani~~~----~---l~~l~~~~~~~LkpGG~lilSgil----~~~~~~v~  228 (254)
T d2nxca1         165 ---NGVRPRFLEGSLEAALP--FGPFDLLVANLYAE----L---HAALAPRYREALVPGGRALLTGIL----KDRAPLVR  228 (254)
T ss_dssp             ---TTCCCEEEESCHHHHGG--GCCEEEEEEECCHH----H---HHHHHHHHHHHEEEEEEEEEEEEE----GGGHHHHH
T ss_pred             ---cCCceeEEecccccccc--ccccchhhhccccc----c---HHHHHHHHHHhcCCCcEEEEEecc----hhhHHHHH
Confidence               23457889999876543  47899999986421    1   167889999999999999985321    23344555


Q ss_pred             HHHHhh
Q psy4592         186 QHCASV  191 (197)
Q Consensus       186 ~~~~~~  191 (197)
                      +.+++.
T Consensus       229 ~~~~~~  234 (254)
T d2nxca1         229 EAMAGA  234 (254)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            555544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.73  E-value=1.4e-18  Score=132.91  Aligned_cols=108  Identities=13%  Similarity=0.194  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ...+++|||+|||+|.++..+++.+  .+++|||+|++|++.|+++.+.     ...+++++++|+.++ + ..++||+|
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~-----~~~~v~~~~~d~~~~-~-~~~~fD~i  105 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-----QGLKPRLACQDISNL-N-INRKFDLI  105 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-----TTCCCEEECCCGGGC-C-CSCCEEEE
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccc-----cCccceeeccchhhh-c-cccccccc
Confidence            3556899999999999999999875  5899999999999999987654     235799999998764 2 24689999


Q ss_pred             EECCC-CCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         135 ITDSS-DPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       135 ~~~~~-~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ++... .++..... ....++++++++|||||.|++...
T Consensus       106 ~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         106 TCCLDSTNYIIDSD-DLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             EECTTGGGGCCSHH-HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ceeeeeeeccCCHH-HHHHHHHHHHHhCCCCeEEEEEeC
Confidence            97432 22222111 115699999999999999998653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.72  E-value=9.7e-18  Score=126.63  Aligned_cols=108  Identities=11%  Similarity=0.170  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +++.+|||+|||+|..+..+++.  .+..+++++|+|+.|++.|+++.....   ...++++..+|+.+   ...+++|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~~~---~~~~~~d~  111 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRH---VEIKNASM  111 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCTTT---CCCCSEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchhhc---ccccccee
Confidence            45679999999999999988864  356799999999999999998765321   34578888888754   23468999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |++....++.+...  ...+++++++.|||||.+++..
T Consensus       112 i~~~~~l~~~~~~d--~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         112 VILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEESCGGGSCGGG--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeeccccChhh--HHHHHHHHHHhCCCCceeeccc
Confidence            99987776654322  2689999999999999999864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.4e-17  Score=127.63  Aligned_cols=160  Identities=16%  Similarity=0.185  Sum_probs=109.6

Q ss_pred             CCCcEEEEcCeeeeeccchh-hHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          22 EFGTALILDGIIQCTEFDEF-SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      .||..+.++..+-..++.-. .....+...    ...+.+|||+|||+|.++..+++..+..+++++|+|+..++.|++|
T Consensus        76 F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N  151 (274)
T d2b3ta1          76 FWSLPLFVSPATLIPRPDTECLVEQALARL----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN  151 (274)
T ss_dssp             ETTEEEECCTTSCCCCTTHHHHHHHHHHHS----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred             EeeeEEEEeccccccccchhhhhhhHhhhh----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH
Confidence            46777777755554444322 223333322    2456789999999999999999877889999999999999999999


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC-------------CCcccc--------cHHHHHHHHh
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG-------------PAESLF--------QASYFELMSR  159 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~-------------~~~~l~--------~~~~~~~~~~  159 (197)
                      ....    ...+++++++|..+.++  ..+||+|++|||.-..             |...+.        -..+++.+.+
T Consensus       152 a~~~----~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~  225 (274)
T d2b3ta1         152 AQHL----AIKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRN  225 (274)
T ss_dssp             HHHH----TCCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGG
T ss_pred             HHHh----CcccceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHH
Confidence            8653    23479999999765433  4689999999985211             111121        1457889999


Q ss_pred             hcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCccc
Q psy4592         160 ALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRLH  196 (197)
Q Consensus       160 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~v~  196 (197)
                      .|+|||.+++..+.     ...+.+.+.+++. |.+|+
T Consensus       226 ~L~~~G~l~lEig~-----~q~~~v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         226 ALVSGGFLLLEHGW-----QQGEAVRQAFILAGYHDVE  258 (274)
T ss_dssp             GEEEEEEEEEECCS-----SCHHHHHHHHHHTTCTTCC
T ss_pred             hcCCCCEEEEEECc-----hHHHHHHHHHHHCCCCeEE
Confidence            99999999997533     2223344444433 66554

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.7e-18  Score=128.75  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|||||||+|.++..+++... .++++||+|++|++.|+++++..    ..++++++++|+.++ +...++||+|+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~----~~~~~~f~~~d~~~~-~~~~~~fD~I~  132 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEE----GKRVRNYFCCGLQDF-TPEPDSYDVIW  132 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGG----GGGEEEEEECCGGGC-CCCSSCEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccc----ccccccccccccccc-ccccccccccc
Confidence            3457999999999999998876654 68999999999999999987642    235789999999874 44468999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.+++.+  .+++++++++|||||.+++..
T Consensus       133 ~~~~l~h~~~~~~--~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGHLTDQHL--AEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccchhhhh--hhHHHHHHHhcCCcceEEEEE
Confidence            9887766654321  579999999999999999863

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=2.9e-18  Score=132.07  Aligned_cols=106  Identities=18%  Similarity=0.270  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..+.+|||+|||+|.++..++.... ..|++||+++.+++.|++++..      .++++++++|+.++ +...++||+|+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~~~-~~~~~~fD~I~  163 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETA-TLPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc------cccceeEEcccccc-ccCCCccceEE
Confidence            4567999999999999998876543 5899999999999999998753      35789999998764 33467899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....++.++..+  .++++++++.|||||.+++..
T Consensus       164 ~~~vl~hl~d~d~--~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         164 IQWTAIYLTDADF--VKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeccccccchhhh--HHHHHHHHHhcCCCcEEEEEe
Confidence            9988777655422  578999999999999999853

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=7.7e-18  Score=128.78  Aligned_cols=106  Identities=18%  Similarity=0.262  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++++|||||||+|..+..+++..  .++++||+|++|++.|+++++.     .+.+++++++|+.++ +. .++||+|
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~-----~~~~i~~~~~d~~~l-~~-~~~fD~I  109 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE-----RNLKIEFLQGDVLEI-AF-KNEFDAV  109 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCCEEEESCGGGC-CC-CSCEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeecccccccccccccc-----ccccchheehhhhhc-cc-ccccchH
Confidence            3566799999999999999988864  5899999999999999998764     345799999998774 33 3689999


Q ss_pred             EECCC-CCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSS-DPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~-~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++... .++.....  ...++++++++|||||++++..
T Consensus       110 ~~~~~~~~~~~~~~--~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYFDEED--LRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcCChHH--HHHHHHHHHHHcCCCcEEEEEe
Confidence            98542 22221111  2579999999999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1.3e-17  Score=128.46  Aligned_cols=128  Identities=16%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      +...++.+|||+|||+|+++..+++. .+..+++++|+++++++.|++++...... ...++++.++|+.+. ...+++|
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~-~~~nv~~~~~d~~~~-~~~~~~f  169 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLADS-ELPDGSV  169 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCGGGC-CCCTTCE
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC-CCceEEEEecccccc-cccCCCc
Confidence            34467789999999999999999875 56679999999999999999987542111 246899999998763 3346789


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh--CCcc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV--FPRL  195 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--f~~v  195 (197)
                      |+|+.|.+.++         +.++++.++|||||.+++.+.+    .++..+..+.++..  |-++
T Consensus       170 DaV~ldlp~P~---------~~l~~~~~~LkpGG~lv~~~P~----i~Qv~~~~~~l~~~~~f~~i  222 (264)
T d1i9ga_         170 DRAVLDMLAPW---------EVLDAVSRLLVAGGVLMVYVAT----VTQLSRIVEALRAKQCWTEP  222 (264)
T ss_dssp             EEEEEESSCGG---------GGHHHHHHHEEEEEEEEEEESS----HHHHHHHHHHHHHHSSBCCC
T ss_pred             ceEEEecCCHH---------HHHHHHHhccCCCCEEEEEeCc----cChHHHHHHHHHHcCCeecc
Confidence            99999986443         3779999999999999987644    57788888888632  6554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.71  E-value=9.9e-17  Score=119.86  Aligned_cols=152  Identities=13%  Similarity=0.101  Sum_probs=105.8

Q ss_pred             eeeeeceeecCCCCCCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEE
Q psy4592           6 SLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAY   85 (197)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~   85 (197)
                      .+.++..|.-+.+....||+.+ +++.....+..-.....++.. ..+..+++.+|||+|||+|..+..+++..+..+|+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~e~~-~~~~r~w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~   84 (209)
T d1nt2a_           7 VYLLDDTLVTKSKYGSHYGEKV-FDGYREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIY   84 (209)
T ss_dssp             EEEETTEEEEECSCCCSSSCCE-ETTEEECCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEE
T ss_pred             eEEeccEeEEecCCcccCCcee-ccceeeeCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEE
Confidence            4566666666655556799885 566654432221112222222 22334567899999999999999999866667999


Q ss_pred             EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC
Q psy4592          86 LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP  163 (197)
Q Consensus        86 ~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp  163 (197)
                      ++|++|.+++.|++....      .+++.++.+|+......  ....+|+|+.+.+.+..      ...+++++.+.|||
T Consensus        85 gvDis~~~i~~a~~~a~~------~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~------~~~~l~~~~~~Lkp  152 (209)
T d1nt2a_          85 AVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQ------IEILKANAEFFLKE  152 (209)
T ss_dssp             EECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTH------HHHHHHHHHHHEEE
T ss_pred             EEeCCHHHHHHHHHHhhc------cCCceEEEeeccCccccccccceEEEEEecccChhh------HHHHHHHHHHHhcc
Confidence            999999999999887653      35899999998753222  24578888877643221      26789999999999


Q ss_pred             CcEEEEEc
Q psy4592         164 GGIVCSQA  171 (197)
Q Consensus       164 gG~l~~~~  171 (197)
                      ||.+++..
T Consensus       153 gG~l~i~~  160 (209)
T d1nt2a_         153 KGEVVIMV  160 (209)
T ss_dssp             EEEEEEEE
T ss_pred             CCeEEEEE
Confidence            99998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.70  E-value=6.6e-17  Score=120.30  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=93.2

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEEC
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITD  137 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~  137 (197)
                      ..|||||||+|.++..+++..|...++|+|+++.++..|.++....    +.+|+.++.+|+.+.... ...++|.|++.
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~----~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh----ccccceeeecCHHHHhhhccCCceehhccc
Confidence            4899999999999999999888899999999999999887765432    346899999999875543 46789999999


Q ss_pred             CCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         138 SSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       138 ~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .|.||...    .++.++++++.+.++|||||.+.+.+..
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~  148 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  148 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            99988633    3466789999999999999999987654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.70  E-value=6.1e-18  Score=129.95  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++++|||+|||+|..+..+++.. ..+++|||+|+++++.|+++....+   ...++.+.++|+........++||+|+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhhcccccccceEEE
Confidence            566899999999999988887764 3689999999999999998764321   235799999997543222356899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|+...+.-....+++++.++|||||+|++..
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            988776653321112578999999999999999864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=1.2e-17  Score=123.73  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=85.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||||||+|..+..+++.+  .+++++|+++.+++.+++.....    +.+++++...|+.+...  .++||+|++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~d~~~~~~--~~~fD~I~~  101 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAE----GLDNLQTDLVDLNTLTF--DGEYDFILS  101 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT----TCTTEEEEECCTTTCCC--CCCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhc----cccchhhhheecccccc--cccccEEEE
Confidence            45699999999999999999875  68999999999999998876542    33579999999765432  578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ....++.+...  ...+++++.++|+|||++++..
T Consensus       102 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         102 TVVMMFLEAQT--IPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             ESCGGGSCTTH--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeecCCHHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence            88877665432  2679999999999999988864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.69  E-value=1.6e-16  Score=125.60  Aligned_cols=127  Identities=14%  Similarity=0.151  Sum_probs=98.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++++|||++||+|+++.++++.+ ..+|++||+++..++.+++|+..  ++++..+++++++|+.++++.   ...+||
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~--n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEA--NHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHH--TTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHH--hcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            456899999999999998877654 36899999999999999999765  344456899999999988764   356899


Q ss_pred             EEEECCCCCCCCCccccc-----HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         133 VIITDSSDPVGPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~-----~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      +|++|||........+.+     .++++.+.++|+|||.+++.++++....+.+...+
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v  277 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQI  277 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence            999999854322222221     46888899999999999999998877766665554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=2e-17  Score=129.09  Aligned_cols=105  Identities=10%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .+|.+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++++..     .+.++++.++|+.+. +. .++||+|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~f~~~d~~~~-~~-~~~fD~v   98 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-----LPYDSEFLEGDATEI-EL-NDKYDIA   98 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS-----SSSEEEEEESCTTTC-CC-SSCEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc-----ccccccccccccccc-cc-cCCceEE
Confidence            5678999999999999999887654 36899999999999999998765     234799999998763 32 4689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++....++.+++    ..+++++.++|||||.+++..
T Consensus        99 ~~~~~l~~~~d~----~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          99 ICHAFLLHMTTP----ETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEESCGGGCSSH----HHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEehhhhcCCCH----HHHHHHHHHHcCcCcEEEEEE
Confidence            999988777665    689999999999999988764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.68  E-value=1.3e-17  Score=122.60  Aligned_cols=118  Identities=10%  Similarity=0.016  Sum_probs=87.4

Q ss_pred             hcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC--------CCCCCeEEEEcchH
Q psy4592          50 LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG--------LSDPRLTVHVGDGF  121 (197)
Q Consensus        50 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~d~~  121 (197)
                      ++.+..+++.+|||+|||+|..+..+++.+  .+|+++|+|++|++.|++..+.....        ......++.++|+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            333334677899999999999999999874  79999999999999999876531100        01245678888876


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +..+....+||+|++....++.+...  ...+++.+++.|||||.+++..
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~--~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADM--RERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHH--HHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEecchhh--hHHHHHHHHHhcCCCcEEEEEE
Confidence            64444446899999977665543321  2678999999999999987765

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2e-17  Score=125.66  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +++.+|||+|||+|.++..+++.+  .+++|+|+++.|++.|+++...          .++.+|+.+ ++.+.++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~----------~~~~~~~~~-l~~~~~~fD~ii  107 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGVK----------NVVEAKAED-LPFPSGAFEAVL  107 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTCS----------CEEECCTTS-CCSCTTCEEEEE
T ss_pred             CCCCEEEEECCCCchhcccccccc--eEEEEeeccccccccccccccc----------ccccccccc-ccccccccccee
Confidence            466799999999999999998774  6999999999999999987431          256788766 455568999999


Q ss_pred             ECC-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         136 TDS-SDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       136 ~~~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +.. ..++.++.    .++++++.++|||||.+++...
T Consensus       108 ~~~~~~~~~~d~----~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         108 ALGDVLSYVENK----DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ECSSHHHHCSCH----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eecchhhhhhhH----HHHHHHHHhhcCcCcEEEEEEC
Confidence            854 44555554    6799999999999999998753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.5e-16  Score=123.83  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=86.0

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      +..+++.+|||||||+|+++..+++..+ ++|++|++|+++++.|++.....  ++ ..++.+...|.++    ..++||
T Consensus        48 l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~--~l-~~~~~~~~~d~~~----~~~~fD  119 (280)
T d2fk8a1          48 LDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASI--DT-NRSRQVLLQGWED----FAEPVD  119 (280)
T ss_dssp             SCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTS--CC-SSCEEEEESCGGG----CCCCCS
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhh--cc-ccchhhhhhhhhh----hccchh
Confidence            3346778999999999999999887755 79999999999999999887652  22 3578888888653    257899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .|++-....+.+...  -+.++++++++|||||.++++.
T Consensus       120 ~i~si~~~eh~~~~~--~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         120 RIVSIEAFEHFGHEN--YDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EEEEESCGGGTCGGG--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhHhhHHHHhhhhh--HHHHHHHHHhccCCCceEEEEE
Confidence            999977654443322  2789999999999999999875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=3.4e-16  Score=124.29  Aligned_cols=126  Identities=20%  Similarity=0.232  Sum_probs=99.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      +++++|||+|||+|+++..+++.+. .+|+++|+++.+++.+++|+...  ++ .++++++++|+.+++..   ...+||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n--gl-~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN--GV-EDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc--CC-CccceeeechhhhhhHHHHhccCCCC
Confidence            5678999999999999999887753 68999999999999999998753  33 24789999999887643   367999


Q ss_pred             EEEECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         133 VIITDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      +|++|+|..........     -.+++..+.++|+|||.+++.++++....+.+.+..
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v  277 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  277 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence            99999986544322211     145788889999999999999988877666655543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.6e-16  Score=125.90  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=97.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~  133 (197)
                      .+++|||+|||+|+++.+++..  ..+|+++|+|+.+++.|++++...  ++  .+++++++|+.+++..   ..++||+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~n--gl--~~~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN--GL--GNVRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT--TC--TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHc--CC--CCcceeeccHHHHhhhhHhhhcCCCE
Confidence            5679999999999999988753  379999999999999999998763  22  4799999999887553   3679999


Q ss_pred             EEECCCCCCCCCccccc-----HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         134 IITDSSDPVGPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~-----~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      |++|+|........+..     .+++..+.++|+|||.+++.++++....+.+.+++
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence            99999865443322211     35788899999999999999988877666666554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.67  E-value=8e-17  Score=121.59  Aligned_cols=100  Identities=15%  Similarity=0.114  Sum_probs=83.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|||||||+|.++..+++.+  .++++||+|+++++.|++..+        .+++++++|+.+..  .+++||+|++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~--~~~~fD~I~~   87 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQ--LPRRYDNIVL   87 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCC--CSSCEEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc--------cccccccccccccc--cccccccccc
Confidence            45699999999999999888764  589999999999999998753        36999999987642  2578999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHH-hhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMS-RALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~-~~LkpgG~l~~~~~  172 (197)
                      ....++.+++    ..++++++ ++|||||.+++.+.
T Consensus        88 ~~vleh~~d~----~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          88 THVLEHIDDP----VALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             ESCGGGCSSH----HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cceeEecCCH----HHHHHHHHHHhcCCCceEEEEeC
Confidence            8877666665    67889997 78999999999763

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-16  Score=123.82  Aligned_cols=99  Identities=20%  Similarity=0.300  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ..++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++..         +++++.++|+.+ ++..+++||+|
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~-l~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHR-LPFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTS-CSBCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehhh-ccCCCCCEEEE
Confidence            45678999999999999999998877789999999999999998864         468899999876 45557899999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ++....+           .++++.|+|||||.+++.+..+
T Consensus       152 ~~~~~~~-----------~~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         152 IRIYAPC-----------KAEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             EEESCCC-----------CHHHHHHHEEEEEEEEEEEECT
T ss_pred             eecCCHH-----------HHHHHHHHhCCCcEEEEEeeCC
Confidence            9754311           2478999999999999987543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=3.9e-16  Score=118.16  Aligned_cols=162  Identities=12%  Similarity=0.045  Sum_probs=104.2

Q ss_pred             CCCCCcEEEEcCeee---eeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH
Q psy4592          20 RKEFGTALILDGIIQ---CTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV   96 (197)
Q Consensus        20 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~   96 (197)
                      ...||+.++-.+...   ..+..-.....++..+..+..+++.+|||+|||+|..+..++...+...|++||++|.|++.
T Consensus        34 ~~~y~e~~~~~~~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~  113 (230)
T d1g8sa_          34 KKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE  113 (230)
T ss_dssp             CCSSSCCEEEETTEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH
T ss_pred             CCccCceeeecCCceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence            345888876443222   22222122233444444444567789999999999999999987676899999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC---
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT---  173 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~---  173 (197)
                      +++....      .+++.++.+|+..........+|++++....++....    ..+++++++.|||||.+++....   
T Consensus       114 a~~~a~~------~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~----~~~l~~~~r~LKpgG~~~i~~k~~~~  183 (230)
T d1g8sa_         114 LLDACAE------RENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA----EILIKNAKWFLKKGGYGMIAIKARSI  183 (230)
T ss_dssp             HHHHTTT------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHH----HHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred             HHHHHhh------hcccceEEEeeccCcccccccceeEEeeccccchHHH----HHHHHHHHHhcccCceEEEEeecccc
Confidence            9887653      4688889999876544433444544433222232222    67899999999999998886311   


Q ss_pred             -C-CcChhHHHHHHHHHHhh
Q psy4592         174 -L-WYSLDCVGNTLQHCASV  191 (197)
Q Consensus       174 -~-~~~~~~~~~~~~~~~~~  191 (197)
                       . ......+++..+.+++.
T Consensus       184 d~~~~~~~~~~e~~~~L~~a  203 (230)
T d1g8sa_         184 DVTKDPKEIFKEQKEILEAG  203 (230)
T ss_dssp             CSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence             1 11223445555555544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.5e-16  Score=118.02  Aligned_cols=115  Identities=21%  Similarity=0.266  Sum_probs=88.4

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG  118 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  118 (197)
                      +.....++..+.   .+++.+|||||||+|.++..+++. .+..+++++|+++++++.|++++...    ...++.++++
T Consensus        61 P~~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~----~~~n~~~~~~  133 (213)
T d1dl5a1          61 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL----GIENVIFVCG  133 (213)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEES
T ss_pred             chhhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh----cccccccccC
Confidence            444556665554   367789999999999999988864 34578999999999999999987653    3468899999


Q ss_pred             chHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         119 DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       119 d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |+.+.++. .++||+|+++...+..+          +.+.+.|||||++++...
T Consensus       134 d~~~~~~~-~~~fD~I~~~~~~~~~p----------~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         134 DGYYGVPE-FSPYDVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             CGGGCCGG-GCCEEEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBC
T ss_pred             chHHcccc-ccchhhhhhhccHHHhH----------HHHHHhcCCCcEEEEEEC
Confidence            98775444 46899999988654332          346778999999998653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=8.4e-17  Score=114.51  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=86.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++++|||+|||+|.++.+++.++. .++++||+++++++.+++++...+   ...+++++++|+..++....++||+|++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc---cccchhhhcccccccccccccccceeEe
Confidence            568999999999999998887754 699999999999999999987542   2357999999999988777889999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~~  173 (197)
                      |||.....     ....++.+.  +.|+|+|.+++....
T Consensus        90 DPPy~~~~-----~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          90 DPPYAKET-----IVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CCSSHHHH-----HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhccch-----HHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            99742211     134555553  579999999987543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=9.5e-17  Score=124.04  Aligned_cols=124  Identities=19%  Similarity=0.267  Sum_probs=96.4

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      +...++.+|||+|||+|+++..+++. .+..+++++|+++++++.|++++...+   ...++.+...|+....  ....|
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d~~~~~--~~~~~  173 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDV  173 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSE
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEeccccccc--cccce
Confidence            33467889999999999999999874 456799999999999999999886531   2357889999965422  34679


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPR  194 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~  194 (197)
                      |.|+.+.+.     +    .++++++.++|||||++++.+.+    .+.+.+..+.+++. |-+
T Consensus       174 D~V~~d~p~-----p----~~~l~~~~~~LKpGG~lv~~~P~----~~Qv~~~~~~l~~~gF~~  224 (266)
T d1o54a_         174 DALFLDVPD-----P----WNYIDKCWEALKGGGRFATVCPT----TNQVQETLKKLQELPFIR  224 (266)
T ss_dssp             EEEEECCSC-----G----GGTHHHHHHHEEEEEEEEEEESS----HHHHHHHHHHHHHSSEEE
T ss_pred             eeeEecCCC-----H----HHHHHHHHhhcCCCCEEEEEeCc----ccHHHHHHHHHHHCCcee
Confidence            999998753     2    34789999999999999987643    46777777777754 543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=3.5e-16  Score=122.26  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=86.6

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD  132 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D  132 (197)
                      +..+++.+|||||||+|+++.++++..+ +++++|++|++.++.+++.....  ++ ..++++...|..    ..+++||
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~--~l-~~~v~~~~~d~~----~~~~~fD  128 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV--DS-PRRKEVRIQGWE----EFDEPVD  128 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHS--CC-SSCEEEEECCGG----GCCCCCS
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhh--cc-chhhhhhhhccc----ccccccc
Confidence            3346778999999999999999987765 79999999999999998876542  22 357889889853    3357899


Q ss_pred             EEEECCCC-CCCCCcc----cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSD-PVGPAES----LFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~-~~~~~~~----l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .|++-... |......    -.-+.+++++.++|||||+++++...
T Consensus       129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            99997655 4332110    11278999999999999999997643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.4e-16  Score=122.70  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCC-------CCCCCCCeEEEEcchHHHH
Q psy4592          53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMA-------VGLSDPRLTVHVGDGFRFM  124 (197)
Q Consensus        53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~d~~~~~  124 (197)
                      +...++.+|||+|||+|+++..+++. .+..+++++|+++++++.|++++...+       ......++++.++|+.+..
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence            34467889999999999999999874 455799999999999999998864311       0012468999999986543


Q ss_pred             hh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         125 SE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       125 ~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      .. ....||.|+.|.+.++.         .+.++.++|||||++++.+.+    .+++....+.++..
T Consensus       174 ~~~~~~~fD~V~LD~p~P~~---------~l~~~~~~LKpGG~lv~~~P~----i~Qv~~~~~~l~~~  228 (324)
T d2b25a1         174 EDIKSLTFDAVALDMLNPHV---------TLPVFYPHLKHGGVCAVYVVN----ITQVIELLDGIRTC  228 (324)
T ss_dssp             -------EEEEEECSSSTTT---------THHHHGGGEEEEEEEEEEESS----HHHHHHHHHHHHHH
T ss_pred             cccCCCCcceEeecCcCHHH---------HHHHHHHhccCCCEEEEEeCC----HHHHHHHHHHHHHc
Confidence            22 24689999999875443         678999999999999987644    46777788777643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.1e-15  Score=118.99  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=86.2

Q ss_pred             CCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        54 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..+++.+|||||||+|+.+..+++..+ +++++|.+|++.++.|++.....  + ...++++..+|.++.    +++||.
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~--g-~~~~v~~~~~d~~~~----~~~fD~  130 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANS--E-NLRSKRVLLAGWEQF----DEPVDR  130 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTC--C-CCSCEEEEESCGGGC----CCCCSE
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhh--h-hhhhhHHHHhhhhcc----cccccc
Confidence            346778999999999999999888765 89999999999999999876542  2 346899999997542    478999


Q ss_pred             EEECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         134 IITDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       134 I~~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      |++-... |.....   ...+++++.++|||||.++++..
T Consensus       131 i~si~~~eh~~~~~---~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         131 IVSIGAFEHFGHER---YDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             EEEESCGGGTCTTT---HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eeeehhhhhcCchh---HHHHHHHHHhhcCCCCcEEEEEE
Confidence            9996654 433222   26899999999999999998764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.62  E-value=1.1e-15  Score=114.99  Aligned_cols=111  Identities=23%  Similarity=0.233  Sum_probs=85.9

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      ...+..++..+.+   +++.+|||||||+|+++..+++..  .+|+++|+++++++.|++++..      ..+++++.+|
T Consensus        56 p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d  124 (224)
T d1vbfa_          56 LNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY------YNNIKLILGD  124 (224)
T ss_dssp             HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT------CSSEEEEESC
T ss_pred             hhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc------ccccccccCc
Confidence            3444455655542   677899999999999998888764  6899999999999999998764      3589999999


Q ss_pred             hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       120 ~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +...++. .++||.|+++...+..+          +.+.+.|||||++++..+
T Consensus       125 ~~~g~~~-~~pfD~Iiv~~a~~~ip----------~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         125 GTLGYEE-EKPYDRVVVWATAPTLL----------CKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             GGGCCGG-GCCEEEEEESSBBSSCC----------HHHHHTEEEEEEEEEEEC
T ss_pred             hhhcchh-hhhHHHHHhhcchhhhh----------HHHHHhcCCCCEEEEEEc
Confidence            8765554 47899999987643332          445678999999998653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=115.73  Aligned_cols=112  Identities=13%  Similarity=-0.038  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-------------CCCCCCeEEEEcchHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-------------GLSDPRLTVHVGDGFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~d~~~  122 (197)
                      +.+.+|||+|||+|..+..+++.+  .+|++||+|+.+++.|++.......             .....++++.++|+.+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            456799999999999999999874  6999999999999999876542100             0023579999999887


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ......+.||+|+.....+..+...  .+.+++++.++|||||.+++..
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~--r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGD--RKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEeccchh--hHHHHHHHHhhcCCcceEEEEE
Confidence            6555567999999988776654332  2789999999999999877664

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.61  E-value=3.6e-15  Score=116.78  Aligned_cols=127  Identities=17%  Similarity=0.211  Sum_probs=94.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      ..+++|||++||+|+++.+++..+  ++|++||.|+.+++.|++|+..  +++...+++++++|+.+++..   ...+||
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~l--n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD  206 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVL--AGLEQAPIRWICEDAMKFIQREERRGSTYD  206 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHH--HTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhh--hcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence            456799999999999999988764  5899999999999999998764  233455799999999998764   367899


Q ss_pred             EEEECCCCCCC-CCccc-----ccHHHHHHHHhhcCCCcE-EEEEcCCCCcChhHHHHHHH
Q psy4592         133 VIITDSSDPVG-PAESL-----FQASYFELMSRALRPGGI-VCSQAGTLWYSLDCVGNTLQ  186 (197)
Q Consensus       133 ~I~~~~~~~~~-~~~~l-----~~~~~~~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~  186 (197)
                      +||+|||.... +....     +...+++.+.++|+|||. +++++++.......+.+++.
T Consensus       207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~  267 (309)
T d2igta1         207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR  267 (309)
T ss_dssp             EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999985332 11111     114466788899999996 44545566666666666654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=4.2e-16  Score=115.90  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      ..+|||||||+|.++..+.      ++++||+|+.+++.|+++           +++++++|+.+. +..+++||+|++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-~~~~~~fD~I~~~   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------cccccccccccc-ccccccccccccc
Confidence            4589999999999987763      457999999999999873           478999998763 4456899999999


Q ss_pred             CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...++.+++    ..++++++++|+|||.+++...
T Consensus        99 ~~l~h~~d~----~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          99 TTICFVDDP----ERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCGGGSSCH----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccc----ccchhhhhhcCCCCceEEEEec
Confidence            888777665    7899999999999999988763

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.9e-16  Score=115.51  Aligned_cols=122  Identities=21%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEE
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHV  117 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~  117 (197)
                      +..+..++..+.. ..+++.+|||||||+|+.+..+++. .+..+|+++|+++++++.|++++.+.. ......++++..
T Consensus        60 P~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~  138 (224)
T d1i1na_          60 PHMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  138 (224)
T ss_dssp             HHHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             hHHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence            4555667766532 1256689999999999998888764 345799999999999999998865321 001235789999


Q ss_pred             cchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       118 ~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +|+....+. .++||.|+++...+..+          +.+.+.|||||++++....
T Consensus       139 gD~~~~~~~-~~~fD~I~~~~~~~~ip----------~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         139 GDGRMGYAE-EAPYDAIHVGAAAPVVP----------QALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             SCGGGCCGG-GCCEEEEEECSBBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred             eecccccch-hhhhhhhhhhcchhhcC----------HHHHhhcCCCcEEEEEEcc
Confidence            998765443 57899999988654432          4567899999999986643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.58  E-value=1.5e-15  Score=116.46  Aligned_cols=107  Identities=28%  Similarity=0.409  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ...++|||||||+|.++..+++..+..+++++|+ |++++.+++++...  + ...+++++.+|+.+   ....+||+|+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~-~~~rv~~~~~D~~~---~~~~~~D~v~  151 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--G-LSDRVDVVEGDFFE---PLPRKADAII  151 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--T-CTTTEEEEECCTTS---CCSSCEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh--h-cccchhhccccchh---hcccchhhee
Confidence            4557999999999999999998888889999998 77889898876542  2 23689999999754   2246799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ..+++++++++|||||++++.-
T Consensus       152 ~~~vlh~~~d~~--~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         152 LSFVLLNWPDHD--AVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eccccccCCchh--hHHHHHHHHHhcCCCcEEEEEe
Confidence            988776654432  1468999999999999988853

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=3.9e-15  Score=111.32  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      ++....|+..+..   .++.+|||||||+|+.+..+++..+ .+++++|.++++++.|++++...    ...|+.++++|
T Consensus        64 P~~~a~ml~~L~l---~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~----g~~nv~~~~gd  135 (215)
T d1jg1a_          64 PHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA----GVKNVHVILGD  135 (215)
T ss_dssp             HHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESC
T ss_pred             hhhHHHHHHhhcc---CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHc----CCceeEEEECc
Confidence            4555666666643   5678999999999999988887644 67999999999999999988754    34789999999


Q ss_pred             hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       120 ~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +.+.++. .++||.|++.......|          ..+.+.|+|||++++...
T Consensus       136 ~~~g~~~-~~pfD~Iiv~~a~~~ip----------~~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         136 GSKGFPP-KAPYDVIIVTAGAPKIP----------EPLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             GGGCCGG-GCCEEEEEECSBBSSCC----------HHHHHTEEEEEEEEEEEC
T ss_pred             cccCCcc-cCcceeEEeecccccCC----------HHHHHhcCCCCEEEEEEc
Confidence            9875554 57899999987654333          335668999999998653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.7e-15  Score=114.61  Aligned_cols=110  Identities=16%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             CeEEEEeCCchHhHHHHhcC----CC--CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----c
Q psy4592          59 KKVLIVGGGDGGVAREVLKH----PS--VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----H  127 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~----~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~  127 (197)
                      .+|||||||+|.++..+++.    .+  ...+++||+++.|++.+++++.... .+...+..+...++.++...     .
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccCC
Confidence            48999999999987776542    12  2468999999999999998865421 11222455667776654322     3


Q ss_pred             CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .++||+|++....++.+++    ..++++++++|+|||.+++...+
T Consensus       121 ~~~fD~I~~~~~l~~~~d~----~~~l~~l~~~LkpgG~l~i~~~~  162 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDI----PATLKFFHSLLGTNAKMLIIVVS  162 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCH----HHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCceeEEEEccceecCCCH----HHHHHHHHhhCCCCCEEEEEEec
Confidence            6789999999888777665    78999999999999998887543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=2.2e-14  Score=108.13  Aligned_cols=139  Identities=17%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CCCCcEEEEcCe---eeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHH
Q psy4592          21 KEFGTALILDGI---IQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEV   96 (197)
Q Consensus        21 ~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~   96 (197)
                      ..||+.++-.+.   ...++..-.....++.-+..+..+++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.
T Consensus        34 ~vyge~~~~~~~~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~  113 (227)
T d1g8aa_          34 RVYGERVIKWEGEEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE  113 (227)
T ss_dssp             CCTTCCEEEETTEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             cccCceEEEcCCeeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence            358887654322   2222211111133444344444567789999999999999999875 455799999999999999


Q ss_pred             HHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592          97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++++...      ..++..+..|+.....  .....+|+|+++.+.+..      ...+++++.+.|||||.+++..
T Consensus       114 a~~~a~~------~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~------~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         114 LVPIVEE------RRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ------AKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             HHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHh------cCCceEEEEECCCcccccccccceEEEEEEccccch------HHHHHHHHHHhcccCCeEEEEE
Confidence            9988764      3578888888764322  235689999998754321      2678999999999999988854

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.7e-15  Score=108.44  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=85.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||++||+|.++.+++.++. .+++.||.++..++.+++++...    ...+.+++.+|+.+++.....+||+|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~----~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL----KAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT----TCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc----cccceeeeeecccccccccccccCEEEE
Confidence            456999999999999999888864 69999999999999999997653    3457899999999988776789999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEc
Q psy4592         137 DSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQA  171 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~  171 (197)
                      |||.....     ..+.+..+.+  .|+++|.+++..
T Consensus       118 DPPY~~~~-----~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFRRGL-----LEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSSTTT-----HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cCccccch-----HHHHHHHHHHCCCCCCCeEEEEEe
Confidence            99854321     1556666654  699999999864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=109.12  Aligned_cols=105  Identities=21%  Similarity=0.291  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~  129 (197)
                      .++++|||||||+|..+.++++..+ ..+++++|.+++..+.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--g~-~~~i~~~~Gda~e~l~~~~~~~~~~  134 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EA-EHKIDLRLKPALETLDELLAAGEAG  134 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TC-TTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc--Cc-cceEEEEEeehhhcchhhhhhcccC
Confidence            5678999999999999999997643 579999999999999999998652  23 358999999998877542     56


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +||+|+.|....   .    ...+++.+.+.|+|||++++-
T Consensus       135 ~fD~ifiD~dk~---~----y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         135 TFDVAVVDADKE---N----CSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             CEEEEEECSCST---T----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEeCCHH---H----HHHHHHHHHHHhcCCcEEEEe
Confidence            899999987421   1    167889999999999999984

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=4.3e-15  Score=114.26  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++.+|||+|||+|.++..+++.. .++|+++|++|.+++.+++|+...  ++ .++++++++|+.++..  ...||.|+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n--~l-~~~v~~~~~D~~~~~~--~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN--KV-EDRMSAYNMDNRDFPG--ENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT--TC-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHh--CC-CceEEEEEcchHHhcc--CCCCCEEE
Confidence            567899999999999999988764 369999999999999999998653  22 2479999999987543  46899999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++|.    .    ..++++.+.++|++||++.++.
T Consensus       180 ~~~p~----~----~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         180 MGYVV----R----THEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             ECCCS----S----GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCC----c----hHHHHHHHHhhcCCCCEEEEEe
Confidence            98762    1    1457888999999999987654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.53  E-value=1.2e-14  Score=106.12  Aligned_cols=107  Identities=18%  Similarity=0.240  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .++.+|||++||+|+++.+++.++. ..+++||.++.+++.+++++...+   ...+++++++|+.+++..   ...+||
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchhhhhhhcccCCCcc
Confidence            3567999999999999999998854 689999999999999999976432   234799999999988764   356899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~  171 (197)
                      +|++|||.....     ..+.++.+.  ..|+++|.+++..
T Consensus       116 lIflDPPY~~~~-----~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         116 LVLLDPPYAKQE-----IVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             EEEECCCGGGCC-----HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             eEEechhhhhhH-----HHHHHHHHHHCCCCCCCEEEEEEc
Confidence            999999853221     155677765  4699999999865

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=2.3e-14  Score=103.62  Aligned_cols=104  Identities=21%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D  132 (197)
                      ..+.+|||+|||+|.++.++++.+  .+++++|+|+.+++.+++++...     +...++...++..++.   ...++||
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRT-----GLGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHH-----TCCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhh-----ccccceeeeehhcccccccccCCccc
Confidence            456799999999999999888774  58889999999999999997753     1233556666554433   2457899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHH--HhhcCCCcEEEEEcC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELM--SRALRPGGIVCSQAG  172 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~--~~~LkpgG~l~~~~~  172 (197)
                      +|++|||.....      .+.+..+  ...|+|||++++...
T Consensus       113 ~If~DPPY~~~~------~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         113 VAFMAPPYAMDL------AALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCCTTSCT------THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eeEEccccccCH------HHHHHHHHHcCCcCCCeEEEEEec
Confidence            999999865432      1233333  357999999998653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.5e-15  Score=114.41  Aligned_cols=114  Identities=15%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~  133 (197)
                      .++++|||+|||+|..+..+++.+  .+|+++|+|++|++.|+++....+......+..+...|.......  ..++||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            456799999999999999998874  689999999999999988754311000112345556665443221  2568999


Q ss_pred             EEECC-CCCCCCCccc---ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDS-SDPVGPAESL---FQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~-~~~~~~~~~l---~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |++.. ..++.++...   ....++++++++|||||+|++..
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            99754 2222222110   11569999999999999999864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.9e-14  Score=112.34  Aligned_cols=108  Identities=20%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++|||||||+|.++..+++.+. .+|+++|.++.+...++.....   + ...+++++.+|+.+. ....++||+|+
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~---~-~~~~i~~~~~~~~~l-~~~~~~~D~Iv  107 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLN---K-LEDTITLIKGKIEEV-HLPVEKVDVII  107 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHT---T-CTTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHh---C-CCccceEEEeeHHHh-cCccccceEEE
Confidence            3567999999999999998888754 6999999999886544432221   1 246899999998773 44457999999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +.+..+........ +.++....+.|||||+++..
T Consensus       108 se~~~~~~~~e~~~-~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         108 SEWMGYFLLFESML-DSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             ECCCBTTBTTTCHH-HHHHHHHHHHEEEEEEEESC
T ss_pred             Eeeeeeeccccccc-HHHHHHHHhcCCCCcEEecc
Confidence            98876654443222 66777888999999998743

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.51  E-value=3.1e-14  Score=107.18  Aligned_cols=105  Identities=15%  Similarity=0.253  Sum_probs=86.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------C
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------Q  128 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~  128 (197)
                      .++++||+||+++|+.+.++++.. ...+++.+|.+++..+.|++++.+.  ++ .++++++.+|+.+.++.-      .
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~--g~-~~~i~~~~g~a~~~L~~l~~~~~~~  134 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GV-DHKIDFREGPALPVLDEMIKDEKNH  134 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh--cc-ccceeeeehHHHHHHHHHHhccccC
Confidence            467899999999999999998643 3579999999999999999998752  33 358999999999887652      4


Q ss_pred             CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++||+|+.|...   ..    ...+++.+.++|+|||.+++-
T Consensus       135 ~~fD~iFiDa~k---~~----y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         135 GSYDFIFVDADK---DN----YLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             TCBSEEEECSCS---TT----HHHHHHHHHHHBCTTCCEEEE
T ss_pred             CceeEEEeccch---hh----hHHHHHHHHhhcCCCcEEEEc
Confidence            689999999842   11    267999999999999999885

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.49  E-value=2e-14  Score=110.40  Aligned_cols=107  Identities=26%  Similarity=0.321  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ...++|||||||+|.++..+++..|..+++++|+ |++++.+++++...  + ..++++++.+|..+   ..+.+||+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~--~-~~~ri~~~~~d~~~---~~p~~~D~v~  152 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--G-LADRVTVAEGDFFK---PLPVTADVVL  152 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--T-CTTTEEEEECCTTS---CCSCCEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--C-Ccceeeeeeeeccc---cccccchhhh
Confidence            3457999999999999999999888889999998 88899998876532  2 23689999999654   2245799999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ...++++++++|||||++++.-
T Consensus       153 ~~~vLh~~~d~~--~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         153 LSFVLLNWSDED--ALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccCcHH--HHHHHHHHHhhcCCcceeEEEE
Confidence            988776654432  2578999999999999988763

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=3.5e-14  Score=112.69  Aligned_cols=106  Identities=23%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++++|||||||+|.++..+++.+. .+|+++|.++ +++.|++.....  + ...+++++++|+.+. +.+.++||+|++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~--~-~~~~i~~i~~~~~~l-~~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELN--G-FSDKITLLRGKLEDV-HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHT--T-CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHh--C-ccccceEEEeehhhc-cCcccceeEEEE
Confidence            567999999999999998888754 6999999997 567777654432  1 246899999998763 444579999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .+..+........ +.++....+.|||||.++-
T Consensus       112 e~~~~~~~~e~~~-~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         112 EWMGYFLLYESMM-DTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTBSTTCCH-HHHHHHHHHHEEEEEEEES
T ss_pred             EecceeeccchhH-HHHHHHHHhccCCCeEEEe
Confidence            8876554433222 6788888999999999863

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=3.7e-14  Score=106.56  Aligned_cols=122  Identities=18%  Similarity=0.207  Sum_probs=86.8

Q ss_pred             hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC------CCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCC
Q psy4592          40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP------SVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPR  112 (197)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~  112 (197)
                      +..+..++..+.. ..+++.+|||||||+|+.+..+++..      ...+|+++|+++++++.|++++.... ......+
T Consensus        64 P~~~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n  142 (223)
T d1r18a_          64 PHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  142 (223)
T ss_dssp             HHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hhhHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence            4455666665531 12566899999999999988877642      23489999999999999988753210 0002358


Q ss_pred             eEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       113 ~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      +.+..+|+.+.++. .++||.|+++...+..+          +.+.+.|||||++++....
T Consensus       143 v~~~~~d~~~~~~~-~~~fD~Iiv~~a~~~~p----------~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         143 LLIVEGDGRKGYPP-NAPYNAIHVGAAAPDTP----------TELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             EEEEESCGGGCCGG-GCSEEEEEECSCBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred             EEEEeccccccccc-ccceeeEEEEeechhch----------HHHHHhcCCCcEEEEEEec
Confidence            99999998876554 46899999988654332          3467899999999986643

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=4e-13  Score=99.37  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .-.+++|||+|||+|.++.+++..+. ..++++|+|+.+++.+++|+...     ..+.+++.+|+.++    .++||+|
T Consensus        44 dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~-----~~~~~~~~~d~~~~----~~~fD~V  113 (201)
T d1wy7a1          44 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIV  113 (201)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEE
T ss_pred             CCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc-----CCCceEEECchhhh----CCcCcEE
Confidence            34678999999999999998877654 69999999999999999998752     35789999997542    5789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      ++|||.......  ....++......
T Consensus       114 i~nPP~~~~~~~--~d~~~l~~~~~~  137 (201)
T d1wy7a1         114 IMNPPFGSQRKH--ADRPFLLKAFEI  137 (201)
T ss_dssp             EECCCCSSSSTT--TTHHHHHHHHHH
T ss_pred             EEcCcccccccc--ccHHHHHHHHhh
Confidence            999986543221  124455554443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=6.7e-14  Score=110.50  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=79.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++++|||||||+|.++..+++.+. .+|+++|.++.+ ..+++....  ++ ..++++++++|+.+ ++...++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~--n~-~~~~v~~~~~~~~~-~~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKA--NK-LDHVVTIIKGKVEE-VELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHH--TT-CTTTEEEEESCTTT-CCCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHH--hC-CccccceEeccHHH-cccccceeEEEee
Confidence            567999999999999998888754 689999999865 444444332  11 23579999999876 3444579999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ....+........ +.++..+.+.|||||.++-.
T Consensus       107 ~~~~~~l~~e~~~-~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         107 EWMGYCLFYESML-NTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             CCCBBTBTBTCCH-HHHHHHHHHHEEEEEEEESC
T ss_pred             eeeeeeeccHHHH-HHHHHHHHhcCCCCeEEEee
Confidence            8876554333322 77899999999999998743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=4.8e-13  Score=102.96  Aligned_cols=144  Identities=19%  Similarity=0.324  Sum_probs=98.0

Q ss_pred             CCCcEEEEcCeeeeeccchhhH-HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          22 EFGTALILDGIIQCTEFDEFSY-SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      .||..+.++..+-..+++-... ...+.....   ....+|+|+|||+|.++..+++. +..+++++|+|+..++.|++|
T Consensus        77 F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~N  152 (271)
T d1nv8a_          77 FMGLSFLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKN  152 (271)
T ss_dssp             ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHH
T ss_pred             EeeeEEEEecCccCchhhhhhhhhhhhhhhcc---ccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHH
Confidence            4788888886665555542222 333333221   24468999999999999888765 568999999999999999999


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC-----------CCccccc----HHHH-HHHHhhcCCC
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG-----------PAESLFQ----ASYF-ELMSRALRPG  164 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~-----------~~~~l~~----~~~~-~~~~~~Lkpg  164 (197)
                      ....  + ...++.+..+|..+.+....++||+|++|||.-..           |...|+.    -.++ +-+.+.|+||
T Consensus       153 a~~~--~-~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~  229 (271)
T d1nv8a_         153 AERH--G-VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG  229 (271)
T ss_dssp             HHHT--T-CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             HHHc--C-CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCC
Confidence            7653  1 23478889999877665555799999999983111           0000010    1223 3356899999


Q ss_pred             cEEEEEcC
Q psy4592         165 GIVCSQAG  172 (197)
Q Consensus       165 G~l~~~~~  172 (197)
                      |.+++..+
T Consensus       230 G~l~~Eig  237 (271)
T d1nv8a_         230 KIVLMEIG  237 (271)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEEC
Confidence            99999764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.42  E-value=3.6e-13  Score=99.02  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .-.+++|||+|||+|.++..+++.+. .+|++||+|+.+++.|++|.+         +++++++|+.+    ..++||+|
T Consensus        46 dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~---------~~~~~~~D~~~----l~~~fD~V  111 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSE----ISGKYDTW  111 (197)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGG----CCCCEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccc---------cccEEEEehhh----cCCcceEE
Confidence            34678999999999999988777754 689999999999999999863         57899999754    35789999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHh
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSR  159 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~  159 (197)
                      ++|||......  ..+..|++.+.+
T Consensus       112 i~NPPfg~~~~--~~D~~fl~~a~~  134 (197)
T d1ne2a_         112 IMNPPFGSVVK--HSDRAFIDKAFE  134 (197)
T ss_dssp             EECCCC---------CHHHHHHHHH
T ss_pred             EeCcccchhhh--hchHHHHHHHHh
Confidence            99998643211  112456665543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=104.78  Aligned_cols=132  Identities=11%  Similarity=0.039  Sum_probs=89.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh----h-cCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----E-HQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~-~~~~~  131 (197)
                      ...++||+|||+|.++..+++..+..+++++|+++++++.|+++....  ++ ..++.+...+....+.    . ..++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n--~l-~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--NL-SDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--TC-TTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh--CC-CcceeeeeeccHHhhhhhhhhcccCce
Confidence            346999999999999999888777789999999999999999997653  22 3578888766443221    1 24589


Q ss_pred             eEEEECCCCCCCCC--------------cc---------c--------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhH
Q psy4592         132 DVIITDSSDPVGPA--------------ES---------L--------FQASYFELMSRALRPGGIVCSQAGTLWYSLDC  180 (197)
Q Consensus       132 D~I~~~~~~~~~~~--------------~~---------l--------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~  180 (197)
                      |+|++|||......              +.         +        +-..++++..+.+++.|.+.+..+.    .+.
T Consensus       138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~----~~~  213 (250)
T d2h00a1         138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK----KCS  213 (250)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS----TTS
T ss_pred             eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc----hhh
Confidence            99999999753210              00         0        1133566677889999998765433    244


Q ss_pred             HHHHHHHHHhh-CCcc
Q psy4592         181 VGNTLQHCASV-FPRL  195 (197)
Q Consensus       181 ~~~~~~~~~~~-f~~v  195 (197)
                      ++.+.+.+++. +.++
T Consensus       214 l~~i~~~L~~~g~~~i  229 (250)
T d2h00a1         214 LAPLKEELRIQGVPKV  229 (250)
T ss_dssp             HHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHcCCCeE
Confidence            44555555433 4444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-13  Score=108.18  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=84.0

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-----CCCCCCCeEEEEc
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-----VGLSDPRLTVHVG  118 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~  118 (197)
                      .+++..+.   ..+..+|||+|||+|.++..+++..+..+++|||+++.+++.|++......     .+....+++++++
T Consensus       141 ~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         141 AQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            44444433   356679999999999999988876665689999999999999876532110     0123468999999


Q ss_pred             chHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         119 DGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       119 d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+.+..-. ....+|+|+++...+. ++.    ...+.++++.|||||++++.
T Consensus       218 d~~~~~~~~~~~~advi~~~~~~f~-~~~----~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFVNNFAFG-PEV----DHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEECCTTTC-HHH----HHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccccccCcceEEEEcceecc-hHH----HHHHHHHHHhCCCCcEEEEe
Confidence            98763211 1123688988765432 221    56889999999999999874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.2e-13  Score=99.64  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----cCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----HQQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~  129 (197)
                      .+|++|||+|||+|..+.++++.. +..+++++|+++++.+.|++++...  ++ ..+++++.+|+.+.++.     ..+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~--gl-~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA--GL-QDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH--TC-GGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc--CC-Cccceeeeccccccccchhhccccc
Confidence            467899999999999999998764 3479999999999999999887642  22 35799999999987654     246


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +||+|+.|...    ... .....+.++.++|+|||++++
T Consensus       132 ~~D~ifiD~~~----~~~-~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         132 TLDMVFLDHWK----DRY-LPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             CEEEEEECSCG----GGH-HHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccceeeecccc----ccc-ccHHHHHHHhCccCCCcEEEE
Confidence            89999998531    110 012356777899999998876

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-14  Score=110.34  Aligned_cols=115  Identities=13%  Similarity=0.044  Sum_probs=73.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC-----------------------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR-----------------------  112 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~-----------------------  112 (197)
                      .++.+|||||||+|..+..++... ..+++++|+++.+++.|++++..........+                       
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            456799999999998876666553 35899999999999999988654210000000                       


Q ss_pred             --e-EEEEcchH--HH-HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         113 --L-TVHVGDGF--RF-MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       113 --~-~~~~~d~~--~~-~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        + .....+..  .. .+...++||+|++....++.+...-....+++++.++|||||++++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~  193 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  193 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence              0 00000000  00 012356899999987765443221111568999999999999999865

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=1.1e-12  Score=95.56  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I  134 (197)
                      ...+|||+.||||+++.+++.++. .+++.||.++..++..++++..++  .......+...|+.+++...  ..+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhc--ccccccccccccccccccccccCCcccEE
Confidence            456999999999999999998864 699999999999999999976542  12346788889988776643  4579999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~  171 (197)
                      ++|||.....     ..+.++.+.  ..|+++|.+++..
T Consensus       120 FlDPPY~~~~-----~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         120 FLDPPFHFNL-----AEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             EECCCSSSCH-----HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EechhHhhhh-----HHHHHHHHHHhCCcCCCcEEEEEe
Confidence            9999864321     155667665  4799999999875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=8.7e-12  Score=91.26  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=89.9

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .+++..+.   ..++..+||++||+|+.+..+++..+.++++++|.|+++++.|++++...     ..++.+++++..+.
T Consensus        13 ~evi~~l~---~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~~r~~~~~~~f~~~   84 (192)
T d1m6ya2          13 REVIEFLK---PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREA   84 (192)
T ss_dssp             HHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGH
T ss_pred             HHHHHhhC---CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----cccccchhHHHhhH
Confidence            55555554   24567999999999999999998767789999999999999999988642     35899999887653


Q ss_pred             ---Hhh-cCCceeEEEECCCCCCC----CC-cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         124 ---MSE-HQQEFDVIITDSSDPVG----PA-ESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       124 ---~~~-~~~~~D~I~~~~~~~~~----~~-~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                         +.. ..+++|.|+.|.-....    ++ .--...+.+..+.++|+|||.+++.+
T Consensus        85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence               222 25799999999643110    11 11112578899999999999998865

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=3.6e-12  Score=103.13  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=78.3

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-----CCCCCCCeEE-EE
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-----VGLSDPRLTV-HV  117 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----~~~~~~~~~~-~~  117 (197)
                      .+++..+.   ..++.+|||||||+|.++..+++..+..+++|||+++.+++.|+++.....     .+.......+ ..
T Consensus       206 ~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         206 SDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            44444443   356689999999999999999887665689999999999999987643210     0011223333 22


Q ss_pred             cchH--HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         118 GDGF--RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       118 ~d~~--~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ++..  +.....-..+|+|+++...+. ++.    ...+.++++.|||||+++..
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~f~-~~l----~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFLFD-EDL----NKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTCC-HHH----HHHHHHHHTTCCTTCEEEES
T ss_pred             echhhccccccccccceEEEEecccCc-hHH----HHHHHHHHHhcCCCcEEEEe
Confidence            3322  112222346899998764322 221    56889999999999999873

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.8e-13  Score=101.66  Aligned_cols=114  Identities=11%  Similarity=0.011  Sum_probs=73.7

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCC------------------------
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP------------------------  111 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~------------------------  111 (197)
                      ..+.+|||+|||+|..+...+.... .+|+++|+++.+++.+++++......++-.                        
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            4678999999999977654443333 589999999999999999875421111100                        


Q ss_pred             --CeEEEEcchHHHH-----hhcCCceeEEEECCCCCCCC-CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         112 --RLTVHVGDGFRFM-----SEHQQEFDVIITDSSDPVGP-AESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       112 --~~~~~~~d~~~~~-----~~~~~~~D~I~~~~~~~~~~-~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                        ...+...|+....     ....++||+|++....++.+ +..- -..+++++.++|||||+|++..
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~-~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLAS-FQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHH-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHH-HHHHHHHHHHHcCCCCEEEEec
Confidence              0112223332110     01135799999988765543 2211 1668999999999999998864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=7.5e-12  Score=98.92  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=87.2

Q ss_pred             CCCCeEEEEeCCchHhHHHHhc-----CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLK-----HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~-----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  130 (197)
                      ..+.+|||.|||+|++..++..     .....+++|+|+++.+++.|+.+...     ...+..+.++|....  ....+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~--~~~~~  188 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-----QRQKMTLLHQDGLAN--LLVDP  188 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-----HTCCCEEEESCTTSC--CCCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-----hhhhhhhhccccccc--ccccc
Confidence            3456899999999999887753     22335899999999999999887653     234567777875432  23578


Q ss_pred             eeEEEECCCCCCCCC--------------cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592         131 FDVIITDSSDPVGPA--------------ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA  189 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~--------------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      ||+|++|||......              ......-|++.+.+.|+|||++++.+.+.+........+.+.+.
T Consensus       189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~  261 (328)
T d2f8la1         189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIK  261 (328)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred             ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHH
Confidence            999999998632100              00011347999999999999988777665654444444444443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.2e-10  Score=90.20  Aligned_cols=134  Identities=13%  Similarity=0.158  Sum_probs=91.5

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      ...+.+|||+++|.|+=+..++.......++++|+++.-++..++++...    ...++.....|..........+||.|
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~----g~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc----cccceeeeccccccchhcccccccEE
Confidence            45668999999999999988886555578999999999998888887653    22345555555432222235689999


Q ss_pred             EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ++|+|....    .++..              ...+++.++.+.|||||+++..+++...  +..+++.+.+-+.+++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~--~ENE~vv~~~l~~~~~  251 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP--EENSLQIKAFLQRTAD  251 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG--GGTHHHHHHHHHHCTT
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch--hhCHHHHHHHHHhCCC
Confidence            999986442    11110              1356888999999999999999888444  3334444444444443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.00  E-value=3.5e-11  Score=91.19  Aligned_cols=102  Identities=17%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      +.||.++..|         ......++..+.   ..+..+|||||||+|.++..+++..  .++++||+|+.+++.+++.
T Consensus         5 ~k~GQnFL~d---------~~ii~kIv~~~~---~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~   70 (245)
T d1yuba_           5 IKYSQNFLTS---------EKVLNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEK   70 (245)
T ss_dssp             CCSCCCBCCC---------TTTHHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCT
T ss_pred             CCCCCcccCC---------HHHHHHHHHhcC---CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhh
Confidence            3467776555         222345554443   2456799999999999999998874  6999999999999888877


Q ss_pred             cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592         101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG  143 (197)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~  143 (197)
                      ++      ..++++++++|+.++ +.....++.|++|.|.+..
T Consensus        71 ~~------~~~n~~ii~~D~l~~-~~~~~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          71 LK------LNTRVTLIHQDILQF-QFPNKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             TT------TCSEEEECCSCCTTT-TCCCSSEEEEEEECCSSSC
T ss_pred             hh------hccchhhhhhhhhcc-ccccceeeeEeeeeehhhh
Confidence            65      246899999999764 3345677889999987665

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.3e-09  Score=84.33  Aligned_cols=104  Identities=15%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D  132 (197)
                      .+..+|||+.||+|.++..+++..  .+|++||++++.++.|+++....    .-.|++++.+|+.+.+..   ...++|
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n----~i~n~~~~~~~~~~~~~~~~~~~~~~d  284 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLN----GLQNVTFYHENLEEDVTKQPWAKNGFD  284 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhc----ccccceeeecchhhhhhhhhhhhccCc
Confidence            456799999999999999998765  69999999999999999987653    346899999998765433   246799


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      +|++|||-...       .+.++.+.+. +|.-++++ +++|
T Consensus       285 ~vilDPPR~G~-------~~~~~~l~~~-~~~~ivYV-SCnp  317 (358)
T d1uwva2         285 KVLLDPARAGA-------AGVMQQIIKL-EPIRIVYV-SCNP  317 (358)
T ss_dssp             EEEECCCTTCC-------HHHHHHHHHH-CCSEEEEE-ESCH
T ss_pred             eEEeCCCCccH-------HHHHHHHHHc-CCCEEEEE-eCCH
Confidence            99999974332       3456666654 67655555 4443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1e-09  Score=79.23  Aligned_cols=135  Identities=15%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD  119 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d  119 (197)
                      +-..++.....++  ++..+||||||+.|+|+..+.+. .+...+.++|+.|-         .      ..+++.++++|
T Consensus         8 fKL~EI~~k~~l~--k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~------~i~~~~~~~~d   70 (180)
T d1ej0a_           8 FKLDEIQQSDKLF--KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D------PIVGVDFLQGD   70 (180)
T ss_dssp             HHHHHHHHHHCCC--CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C------CCTTEEEEESC
T ss_pred             HHHHHHHHHhCcc--CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c------ccCCceEeecc
Confidence            3345666655544  56679999999999999988763 34478999998651         1      13578889988


Q ss_pred             hHHHHh-------hcCCceeEEEECCCCCCCCCcccc-------cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         120 GFRFMS-------EHQQEFDVIITDSSDPVGPAESLF-------QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       120 ~~~~~~-------~~~~~~D~I~~~~~~~~~~~~~l~-------~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      ..+...       ....++|+|++|............       ....+.-+.+.|++||.|++-...    ......++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~----g~~~~~l~  146 (180)
T d1ej0a_          71 FRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ----GEGFDEYL  146 (180)
T ss_dssp             TTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES----STTHHHHH
T ss_pred             cccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec----CccHHHHH
Confidence            754321       125689999999875444332110       123456677999999999996532    34566778


Q ss_pred             HHHHhhCCccc
Q psy4592         186 QHCASVFPRLH  196 (197)
Q Consensus       186 ~~~~~~f~~v~  196 (197)
                      ..++..|..|+
T Consensus       147 ~~l~~~F~~V~  157 (180)
T d1ej0a_         147 REIRSLFTKVK  157 (180)
T ss_dssp             HHHHHHEEEEE
T ss_pred             HHHHhhcCEEE
Confidence            88888887775

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.97  E-value=9.4e-10  Score=81.50  Aligned_cols=121  Identities=20%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..++.+|||.|||+|.+...+.+. .....++++|+++..++.             .....++++|....  ....+||+
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~fd~   81 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-------------PPWAEGILADFLLW--EPGEAFDL   81 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-------------CTTEEEEESCGGGC--CCSSCEEE
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-------------cccceeeeeehhcc--ccccccce
Confidence            356689999999999998877653 334679999999865322             23457778886442  23578999


Q ss_pred             EEECCCCCCCC----Ccc---------------------cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592         134 IITDSSDPVGP----AES---------------------LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC  188 (197)
Q Consensus       134 I~~~~~~~~~~----~~~---------------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  188 (197)
                      |+.|+|.....    ...                     -....|++.+.+.|+|||++++.+.+.+......+.+.+.+
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l  161 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFL  161 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHH
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHH
Confidence            99999853210    000                     01145788999999999998888766666444444444444


Q ss_pred             Hh
Q psy4592         189 AS  190 (197)
Q Consensus       189 ~~  190 (197)
                      .+
T Consensus       162 ~~  163 (223)
T d2ih2a1         162 AR  163 (223)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.96  E-value=4.6e-10  Score=84.95  Aligned_cols=99  Identities=20%  Similarity=0.225  Sum_probs=76.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ....+|||||||+|.++..+++..|..+++..|+ |.+++.+    .      ..++++++.+|..+.    ....|+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~------~~~ri~~~~gd~~~~----~p~~D~~~  144 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P------PLSGIEHVGGDMFAS----VPQGDAMI  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C------CCTTEEEEECCTTTC----CCCEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C------CCCCeEEecCCcccc----cccceEEE
Confidence            3447999999999999999999888899999998 5554311    1      246899999997542    24579999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +....|..++..  ....++++++.|+|||.+++.-
T Consensus       145 l~~vLh~~~de~--~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         145 LKAVCHNWSDEK--CIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EESSGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EehhhhhCCHHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence            988777665532  2578999999999999988864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.95  E-value=7.9e-10  Score=83.13  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+.++|||||||+|.++..+++..  .++++||+|+.+++.+++.+.      +.++++++++|+.++- ........|+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~------~~~n~~i~~~D~l~~~-~~~~~~~~vv   90 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV------DHDNFQVLNKDILQFK-FPKNQSYKIF   90 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT------TCCSEEEECCCGGGCC-CCSSCCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh------cccchhhhhhhhhhcc-ccccccceee
Confidence            567899999999999999999864  689999999999999998875      3469999999997642 2223345688


Q ss_pred             ECCCCCCC
Q psy4592         136 TDSSDPVG  143 (197)
Q Consensus       136 ~~~~~~~~  143 (197)
                      .|.|.+..
T Consensus        91 ~NLPYnIs   98 (235)
T d1qama_          91 GNIPYNIS   98 (235)
T ss_dssp             EECCGGGH
T ss_pred             eeehhhhh
Confidence            89875443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=2.4e-09  Score=85.64  Aligned_cols=108  Identities=22%  Similarity=0.282  Sum_probs=85.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-----------CCCCCeEEEEcchHHHHh
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-----------LSDPRLTVHVGDGFRFMS  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~d~~~~~~  125 (197)
                      ++.+|||..||+|..+...++..+...|++.|+|++.++.+++|+..++..           .....+.+.+.|+...+.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            567999999999999987665445579999999999999999987542100           012357888999988887


Q ss_pred             hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ...+.||+|..||+-  .+      ..|++.+.+.++.||++.+.+.
T Consensus       125 ~~~~~fDvIDiDPfG--s~------~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDPFG--SP------MEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECCSS--CC------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCCCC--Cc------HHHHHHHHHHhccCCEEEEEec
Confidence            777889999999941  22      4599999999999999999753

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=8.1e-09  Score=80.70  Aligned_cols=117  Identities=17%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      ..++.+|||+++|.|+=+..++.. .....++++|+++.-+..+++++...    ...++.+...|.... +....+||.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~----~~~~i~~~~~d~~~~-~~~~~~fD~  188 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL----GVLNVILFHSSSLHI-GELNVEFDK  188 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH----TCCSEEEESSCGGGG-GGGCCCEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH----Hhhcccccccccccc-ccccccccE
Confidence            355689999999999988777653 33468999999999998888876653    345788888887653 334678999


Q ss_pred             EEECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592         134 IITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY  176 (197)
Q Consensus       134 I~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~  176 (197)
                      |++|+|.....    ++..              ...+++.++.+.|||||.++..+++...
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            99999864321    1110              1245788999999999999999887544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.82  E-value=1.7e-09  Score=81.70  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||||||+|.++..+++..|..++++.|+ |.+++.+    +      ..++++++.+|..+    +...+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~------~~~rv~~~~gD~f~----~~p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----S------GSNNLTYVGGDMFT----SIPNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C------CBTTEEEEECCTTT----CCCCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----c------ccCceEEEecCccc----CCCCCcEEEE
Confidence            346899999999999999999888899999998 5554422    2      24689999999754    2346899999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCC---cEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPG---GIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~Lkpg---G~l~~~  170 (197)
                      ....|..++..  ..+.++++++.|+||   |++++.
T Consensus       145 ~~vLHdw~d~~--~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         145 KYILHNWTDKD--CLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             ESCGGGSCHHH--HHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EeecccCChHH--HHHHHHHHHHHcCcccCCcEEEEE
Confidence            88777665542  257899999999999   656654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-08  Score=77.06  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D  132 (197)
                      ..+.+|||+++|.|+-+.+++.. .+...++++|+++.-++.+++++...    .-.++.+...|+....+.  ..++||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~----g~~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA----GVSCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc----Cccceeeeehhhhhhcccccccceee
Confidence            45679999999999988877653 33468999999999999999887654    345799999997654322  135799


Q ss_pred             EEEECCCCCCC------CCc------------cc--ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhC
Q psy4592         133 VIITDSSDPVG------PAE------------SL--FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVF  192 (197)
Q Consensus       133 ~I~~~~~~~~~------~~~------------~l--~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f  192 (197)
                      .|++|+|....      +..            .+  .....+..+. .|+|||.++..+++...  +....+.+.+-+.+
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~--~ENe~vV~~~L~~~  245 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ--EENEDVVRDALQQN  245 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG--GGTHHHHHHHHTTS
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh--hHhHHHHHHHHHhC
Confidence            99999985432      100            00  0123445555 47999999988877444  33344444443333


Q ss_pred             C
Q psy4592         193 P  193 (197)
Q Consensus       193 ~  193 (197)
                      |
T Consensus       246 ~  246 (293)
T d2b9ea1         246 P  246 (293)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.79  E-value=2.8e-09  Score=80.49  Aligned_cols=97  Identities=23%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ...+|||||||+|.++..+++..|..++++.|+-+ +++.+    .      ..+++++..+|..+.+    ...|+++.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~----~------~~~r~~~~~~d~~~~~----P~ad~~~l  145 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA----P------SYPGVEHVGGDMFVSI----PKADAVFM  145 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC----C------CCTTEEEEECCTTTCC----CCCSCEEC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc----c------cCCceEEecccccccC----CCcceEEE
Confidence            34789999999999999999988889999999954 33211    1      3468999999975422    34677776


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ....|..++..  ...++++++++|+|||.+++.
T Consensus       146 ~~vlh~~~d~~--~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         146 KWICHDWSDEH--CLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             SSSSTTSCHHH--HHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEeecCCHHH--HHHHHHHHHHhcCCCceEEEE
Confidence            66555554432  267999999999999988876

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.78  E-value=5.1e-09  Score=76.31  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             CCCCeEEEEeCCchHhHHH----Hhc----CCCCccEEEEEcCHHHHHHHHhh------------------cCCCCCCCC
Q psy4592          56 PNPKKVLIVGGGDGGVARE----VLK----HPSVESAYLVEIDNRVIEVSKKY------------------LPGMAVGLS  109 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~----l~~----~~~~~~v~~ve~~~~~~~~a~~~------------------~~~~~~~~~  109 (197)
                      ..+.+|+..|||+|.-+..    +..    .....+|++.|+++.+++.|++.                  +........
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4556999999999974322    221    12235799999999999998742                  111000000


Q ss_pred             C---------CCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         110 D---------PRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       110 ~---------~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      .         ..+.+...+.........++||+|+|-........+.  ..+.++++++.|+|||+|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~--~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT--QEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH--HHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH--HHHHHHHHHHHhCCCcEEEE
Confidence            0         0122333332211111246899999977654433221  26799999999999999887

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.1e-08  Score=75.23  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=78.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++.+++|+|+|.|.=+.-++-..|..+++.+|.+..-+...+.-...+    +-.+++++++.+++..  ...+||+|++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~~~--~~~~fD~V~s  138 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc----CCcceeeeccchhhhc--cccccceehh
Confidence            456999999999976666655556689999999998777776654432    3458999999987642  2468999998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      -+..    +    ...+++-+...++++|.+++.-+.
T Consensus       139 RA~~----~----~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         139 RAFA----S----LNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             SCSS----S----HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             hhhc----C----HHHHHHHHHHhcCCCcEEEEECCC
Confidence            7752    1    167889999999999999987654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.7e-08  Score=74.52  Aligned_cols=79  Identities=14%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-----HhhcCCc
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-----MSEHQQE  130 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~  130 (197)
                      .....|||||||+|.++..+++..  .++++||+|+.+++..++.+.      ..++++++.+|+.++     ......+
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~~~~ii~~D~l~~~~~~~~~~~~~~   91 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFGELAEKMGQP   91 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh------hccchhHHhhhhhhhcccccccccCCC
Confidence            456799999999999999999875  689999999999999987654      346899999999753     1112233


Q ss_pred             eeEEEECCCCCCC
Q psy4592         131 FDVIITDSSDPVG  143 (197)
Q Consensus       131 ~D~I~~~~~~~~~  143 (197)
                      + .|+.|.|.+..
T Consensus        92 ~-~vvgNlPY~Is  103 (252)
T d1qyra_          92 L-RVFGNLPYNIS  103 (252)
T ss_dssp             E-EEEEECCTTTH
T ss_pred             e-EEEecchHHHH
Confidence            3 78889876554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.70  E-value=1.2e-07  Score=68.17  Aligned_cols=116  Identities=22%  Similarity=0.220  Sum_probs=83.6

Q ss_pred             HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      .+.+..+.   ..++..++|..+|.|+.+.++++..  .+++++|.||++++.+++..        .+++.+++++..+.
T Consensus         8 ~Evl~~l~---~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~--------~~~~~~~~~~f~~~   74 (182)
T d1wg8a2           8 QEALDLLA---VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLH--------LPGLTVVQGNFRHL   74 (182)
T ss_dssp             HHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC--------CTTEEEEESCGGGH
T ss_pred             HHHHHhcC---CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhcc--------ccceeEeehHHHHH
Confidence            44454443   3566799999999999999998864  68999999999999998753        35799998876654


Q ss_pred             Hh---h-cCCceeEEEECCCCCCC----CCccc-ccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         124 MS---E-HQQEFDVIITDSSDPVG----PAESL-FQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       124 ~~---~-~~~~~D~I~~~~~~~~~----~~~~l-~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      -.   . ..+++|.|+.|.-....    ++..+ .....++...+.|+|||.+++.+.
T Consensus        75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            32   2 24689999998732111    11111 114578889999999999998653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.67  E-value=5.6e-09  Score=84.94  Aligned_cols=129  Identities=17%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCC----C---------CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHP----S---------VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~----~---------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ..+.+|+|-+||+|++...+.+..    .         ...+.++|+++.+..+|+.+.-.  .+....+..+..+|..+
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l--~g~~~~~~~i~~~d~l~  238 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--HGIGTDRSPIVCEDSLE  238 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--TTCCSSCCSEEECCTTT
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh--cCCccccceeecCchhh
Confidence            446799999999999987766531    1         13589999999999999876432  11223456677888643


Q ss_pred             HHhhcCCceeEEEECCCCCCCCCcc-------------cccHHHHHHHHhhcCCCcEEEEEcCCCC-cChhHHHHHHHHH
Q psy4592         123 FMSEHQQEFDVIITDSSDPVGPAES-------------LFQASYFELMSRALRPGGIVCSQAGTLW-YSLDCVGNTLQHC  188 (197)
Q Consensus       123 ~~~~~~~~~D~I~~~~~~~~~~~~~-------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~  188 (197)
                        .....+||+|++|||........             -....|+..+.+.|++||++++.+.... ......+.+.+.+
T Consensus       239 --~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L  316 (425)
T d2okca1         239 --KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL  316 (425)
T ss_dssp             --SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred             --hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence              22356899999999974321100             0013599999999999998888764322 2333334444444

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-07  Score=72.02  Aligned_cols=79  Identities=24%  Similarity=0.365  Sum_probs=62.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .....|||||+|+|.++..+++..  .++++||+|+.+++..++.+...   ....+++++.+|+..+   ....++.||
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~---~~~~~~~~i~~D~l~~---~~~~~~~vV   91 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT---PVASKLQVLVGDVLKT---DLPFFDTCV   91 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS---TTGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhh---ccccchhhhHHHHhhh---hhhhhhhhh
Confidence            456799999999999999999874  59999999999999998876531   1235899999998653   234567899


Q ss_pred             ECCCCCC
Q psy4592         136 TDSSDPV  142 (197)
Q Consensus       136 ~~~~~~~  142 (197)
                      .|.|.+.
T Consensus        92 ~NLPY~I   98 (278)
T d1zq9a1          92 ANLPYQI   98 (278)
T ss_dssp             EECCGGG
T ss_pred             cchHHHH
Confidence            9987533

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.56  E-value=1.8e-07  Score=69.77  Aligned_cols=129  Identities=13%  Similarity=0.079  Sum_probs=81.0

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++..+|+|+|||.|+++..++...+...+.++++--...+     .+.....+...-+++...+...  ...+.+.|.|+
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~~~~~~~ni~~~~~~~dv~--~l~~~~~D~vl  137 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIPMSTYGWNLVRLQSGVDVF--FIPPERCDTLL  137 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCCCSTTGGGEEEECSCCTT--TSCCCCCSEEE
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCccccccccccccchhhhhHH--hcCCCcCCEEE
Confidence            4556999999999999999988766667888887322100     0111001111234555444221  12357899999


Q ss_pred             ECCCCCCCCCcccc---cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592         136 TDSSDPVGPAESLF---QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR  194 (197)
Q Consensus       136 ~~~~~~~~~~~~l~---~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~  194 (197)
                      ||+... .+++...   +-+.++.+.+.|+|||-|++-+.+|..  +...+.+..|+..|+.
T Consensus       138 cDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~--~~v~e~le~lq~~fgg  196 (257)
T d2p41a1         138 CDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM--SSVIEKMEALQRKHGG  196 (257)
T ss_dssp             ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS--HHHHHHHHHHHHHHCC
T ss_pred             eeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC--hHHHHHHHHHHHHhCC
Confidence            998643 3332211   235677788999999999998866533  5566667777777754

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.56  E-value=3.1e-08  Score=74.03  Aligned_cols=109  Identities=15%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhc----CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE
Q psy4592          41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK----HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH  116 (197)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~  116 (197)
                      ..|++++..+      +|++||+||++.|+.+..++.    ....++++++|++++.......         ..++++++
T Consensus        70 ~~~~eli~~~------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---------~~~~I~~i  134 (232)
T d2bm8a1          70 AVYHDMLWEL------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------DMENITLH  134 (232)
T ss_dssp             HHHHHHHHHH------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------GCTTEEEE
T ss_pred             HHHHHHHHHh------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---------cccceeee
Confidence            3445555433      578999999999987766543    2345799999998865332222         23689999


Q ss_pred             EcchHHH--Hhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         117 VGDGFRF--MSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       117 ~~d~~~~--~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .+|..+.  +.. ....+|+|+.|.. |.. ...+  .+ + .....|++||++++.
T Consensus       135 ~gDs~~~~~~~~l~~~~~dlIfID~~-H~~-~~v~--~~-~-~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         135 QGDCSDLTTFEHLREMAHPLIFIDNA-HAN-TFNI--MK-W-AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             ECCSSCSGGGGGGSSSCSSEEEEESS-CSS-HHHH--HH-H-HHHHTCCTTCEEEEC
T ss_pred             ecccccHHHHHHHHhcCCCEEEEcCC-cch-HHHH--HH-H-HHhcccCcCCEEEEE
Confidence            9986532  222 2346899999875 222 1111  12 2 356899999999984

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=4.3e-07  Score=67.84  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI  134 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I  134 (197)
                      ...+++|||+|.|.=+.-++-..|..+++.+|.+..-+...+.-...+    +-.++.++++.++++-..  ..++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----CCCCcEEEeehhhhccccccccccceEE
Confidence            456999999999976655554456689999999987776665543332    335899999998875432  24689999


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ++-+..    .    ...+++.+...++++|.+++.-+..
T Consensus       146 ~sRAva----~----l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         146 TARAVA----R----LSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             EEECCS----C----HHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEhhhh----C----HHHHHHHHhhhcccCCEEEEECCCC
Confidence            987742    1    1668899999999999999876553

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.52  E-value=1.1e-07  Score=71.57  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=64.9

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC-----CCCeEEEEcchHHHHhhcCCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-----DPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+|||.-+|.|.-+..++..+  ++|+++|.+|.+..+.+..+........     ..+++++++|+.+++....++||+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            489999999999999988774  7999999999888777654322100000     137999999999998876778999


Q ss_pred             EEECCCCCCC
Q psy4592         134 IITDSSDPVG  143 (197)
Q Consensus       134 I~~~~~~~~~  143 (197)
                      |+.||+++..
T Consensus       168 IYlDPMFp~~  177 (250)
T d2oyra1         168 VYLDPMFPHK  177 (250)
T ss_dssp             EEECCCCCCC
T ss_pred             EEECCCCccc
Confidence            9999998654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.8e-07  Score=77.75  Aligned_cols=131  Identities=11%  Similarity=0.027  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcC----CC--------------CccEEEEEcCHHHHHHHHhhcCCCCCCCCC---CCeE
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKH----PS--------------VESAYLVEIDNRVIEVSKKYLPGMAVGLSD---PRLT  114 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~----~~--------------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~---~~~~  114 (197)
                      ..+.+|+|-+||+|++...+.+.    ..              ...++++|+++.+..+|+-++-..  +...   ..-.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~--~~~~~i~~~~~  240 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH--DIEGNLDHGGA  240 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT--TCCCBGGGTBS
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh--cccccccccch
Confidence            44579999999999998765542    11              125899999999999998764321  1010   1223


Q ss_pred             EEEcchHHHHhhcCCceeEEEECCCCCCCCCc----------ccccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHH
Q psy4592         115 VHVGDGFRFMSEHQQEFDVIITDSSDPVGPAE----------SLFQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGN  183 (197)
Q Consensus       115 ~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~----------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~  183 (197)
                      +..++....-.....+||+|++|||.......          .-..--|++.+.+.|+|||++.+.+...+. ....-+.
T Consensus       241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~  320 (524)
T d2ar0a1         241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD  320 (524)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHH
T ss_pred             hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHH
Confidence            44455432222235689999999996432110          000134899999999999998887654332 3233334


Q ss_pred             HHHHH
Q psy4592         184 TLQHC  188 (197)
Q Consensus       184 ~~~~~  188 (197)
                      +.+.+
T Consensus       321 iR~~L  325 (524)
T d2ar0a1         321 IRRDL  325 (524)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=3.7e-06  Score=65.51  Aligned_cols=87  Identities=17%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccC---CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH
Q psy4592          21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCS---HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS   97 (197)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a   97 (197)
                      +.||...+.|         ......++..+....   ......|||||.|.|.++..++......+++++|+|+...+..
T Consensus        13 k~~GQnfL~d---------~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L   83 (322)
T d1i4wa_          13 FFYGFKYLWN---------PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFL   83 (322)
T ss_dssp             CGGGCCCBCC---------HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHH
T ss_pred             hhccccccCC---------HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            4577766555         344455555543321   1245689999999999999998764335899999999999999


Q ss_pred             HhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592          98 KKYLPGMAVGLSDPRLTVHVGDGFRF  123 (197)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~d~~~~  123 (197)
                      ++.+.       +.+++++.+|+..+
T Consensus        84 ~~~~~-------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          84 NAKFE-------GSPLQILKRDPYDW  102 (322)
T ss_dssp             HHHTT-------TSSCEEECSCTTCH
T ss_pred             HHhcc-------CCCcEEEeCchhhc
Confidence            88764       35799999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.99  E-value=3.1e-05  Score=54.17  Aligned_cols=100  Identities=19%  Similarity=0.290  Sum_probs=73.2

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      +|.+|+.||+|.-+ .+...++..+ ..++.+|.+++.++..+..+..        +++....+-.. +...-...|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~--------~~~~~~~~~~~-l~~~~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS--------RVELLYSNSAE-IETAVAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHH-HHHHHHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcc--------cceeehhhhhh-HHHhhccCcEEE
Confidence            57899999999654 4445555555 7999999999999888776542        45666665433 333345689999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .....+....+.|.+    +++.+.+|||.+++=.
T Consensus       101 ~aalipG~~aP~lIt----~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1         101 GAVLVPGRRAPILVP----ASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             ECCCCTTSSCCCCBC----HHHHTTSCTTCEEEET
T ss_pred             EeeecCCcccCeeec----HHHHhhcCCCcEEEEe
Confidence            988777777788877    4556689999998743

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.81  E-value=3.6e-05  Score=54.36  Aligned_cols=100  Identities=17%  Similarity=0.171  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~  131 (197)
                      .+++.+||.+|||. |.++..+++..+..+|+++|.+++-.+.+++.-.       ..-+.+...+..+.+.. . ...+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccccccchhHHHHHHHHhhccCc
Confidence            35678999999986 6677778877665689999999999999987521       11121222233333333 2 3459


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-...     .     .+.++++.+.++|+|.+++..
T Consensus        98 D~vid~~g-----~-----~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          98 DRVIMAGG-----G-----SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEECSS-----C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             ceEEEccC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence            99986542     1     336688899999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=2.6e-05  Score=54.69  Aligned_cols=99  Identities=23%  Similarity=0.248  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++.+||.+|+| .|.++..+++..+ ++++++|.+++-++.+++.-.         ...+...+-.+......+.+|+
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lGa---------~~~i~~~~~~~~~~~~~~~~d~   94 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGA---------DHYIATLEEGDWGEKYFDTFDL   94 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTC---------SEEEEGGGTSCHHHHSCSCEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccCC---------cEEeeccchHHHHHhhhcccce
Confidence            3567899999998 4556666666655 689999999999999988521         1111111112233344568999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+.........        .++.+.+.|+|+|++++..
T Consensus        95 vi~~~~~~~~~--------~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          95 IVVCASSLTDI--------DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEECCSCSTTC--------CTTTGGGGEEEEEEEEECC
T ss_pred             EEEEecCCccc--------hHHHHHHHhhccceEEEec
Confidence            98654321111        1245678999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.72  E-value=0.00081  Score=46.59  Aligned_cols=99  Identities=19%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE----cchH---HHHhh
Q psy4592          55 HPNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV----GDGF---RFMSE  126 (197)
Q Consensus        55 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~d~~---~~~~~  126 (197)
                      .+.+.+||.+|+| .|.++..+++..+ .+++++|.+++-++.|++.-.         ...+..    .+..   +.+..
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga---------~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGA---------DVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC---------SEEEECCTTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCC---------cEEEeccccccccchhhhhhhc
Confidence            3566899999988 4455566666655 699999999999999988532         111211    1111   22222


Q ss_pred             -cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         127 -HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       127 -~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                       ....+|+|+-...          .+..++.+.+.++|+|.+++....
T Consensus        94 ~~g~g~D~vid~~g----------~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          94 AIGDLPNVTIDCSG----------NEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HSSSCCSEEEECSC----------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccccCCceeeecCC----------ChHHHHHHHHHHhcCCceEEEecC
Confidence             2457899985442          156789999999999999987643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.68  E-value=0.00011  Score=51.65  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          55 HPNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      .+++.+||.+|+|.-+ ++..+++..+...++++|.+++-++.+++.-.       ..-+.....|..+.+.. ..+.+|
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            3566899999997544 34445555555688899999999999988521       11111122344444433 356899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+-..-          ....++.+.+.++|+|.+++..
T Consensus        99 ~vid~~G----------~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          99 FALESTG----------SPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEECSC----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEEcCC----------cHHHHHHHHhcccCceEEEEEe
Confidence            9985542          1567899999999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=6.8e-05  Score=53.88  Aligned_cols=110  Identities=10%  Similarity=0.004  Sum_probs=70.5

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      .+++.+||.+|||. |.++..+++..+..+++++|.+++-++.|++.-..       .-+.....|..+.+..  ....+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------IADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------EEEeCCCcCHHHHHHHHhCCCCc
Confidence            36778999999998 44556666665657999999999999999886211       0011112343333322  24469


Q ss_pred             eEEEECCCCCCC--CC---cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVG--PA---ESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~--~~---~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+++-..-....  +.   ...-..+.++.+.+.++|+|.+++..
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            999865321110  11   01112578999999999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=5.6e-05  Score=53.54  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---Hhh-c-CC
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---MSE-H-QQ  129 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~-~-~~  129 (197)
                      +.+.+||.+|+|. |.++..+++..+..+|+++|.+++-++.+++.-.       ..-+.....|..+.   +.. . ..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-------DLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccc-------eEEEeccccchHHHHHHHHHhhCCC
Confidence            4568999999873 5566677776664589999999999999987521       00111112233222   121 2 34


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+|+|+-...     .     +..++.+.+.|++||++++..
T Consensus       100 g~Dvvid~vG-----~-----~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         100 GADFILEATG-----D-----SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             CEEEEEECSS-----C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             CceEEeecCC-----c-----hhHHHHHHHHhcCCCEEEEEe
Confidence            6999885441     1     235688899999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00047  Score=48.00  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---Hhh-cCC
Q psy4592          55 HPNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---MSE-HQQ  129 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~  129 (197)
                      ..++.+||.+|+|..++. ..+++..+..+++++|.+++-++.|++.-..       ..+.....|..+.   +.. ...
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCCC
Confidence            356679999999866544 4455655545899999999999999875211       0111111222221   111 246


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+|+|+-...          .+..++.+.+.+++||++++....
T Consensus        97 g~Dvvid~~G----------~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          97 KPEVTIECTG----------AEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCSEEEECSC----------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CceEEEeccC----------CchhHHHHHHHhcCCCEEEEEecC
Confidence            7999885442          156789999999999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.44  E-value=0.00043  Score=48.31  Aligned_cols=99  Identities=12%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             CCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~  133 (197)
                      +++..||.+|+|..+.. ..+++..+...++++|.+++-++.+++....       .-+.....+..+..... ...+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-------~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-------HVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-------EEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-------eeecCcccHHHHHHHhhCCCCceE
Confidence            45679999999865544 4555554557899999999999999885321       01111112233333332 456999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+....          ....++...+.|+++|++++..
T Consensus       104 vid~~g----------~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         104 AMDFVG----------SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEESSC----------CHHHHHHGGGGEEEEEEEEECC
T ss_pred             EEEecC----------cchHHHHHHHHHhCCCEEEEEe
Confidence            986552          1557899999999999999865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00029  Score=49.25  Aligned_cols=97  Identities=13%  Similarity=0.057  Sum_probs=65.4

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      +++.+||..|+  |.|..+..+++..+ +++++++-+++-.+.+++.-.       ..-+.....|..+.+..  ....+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeccccccccccccccccC-cccccccccccccccccccCc-------ccccccccccHHHHhhhhhccCCc
Confidence            56679999996  45566677777665 688899989988888877421       11122222344444433  24579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+....           ...++...+.|+|+|.++...
T Consensus        99 d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          99 DIIIEMLA-----------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEEESCH-----------HHHHHHHHHHEEEEEEEEECC
T ss_pred             eEEeeccc-----------HHHHHHHHhccCCCCEEEEEe
Confidence            99986441           446788899999999999863

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.35  E-value=0.00038  Score=48.85  Aligned_cols=100  Identities=14%  Similarity=0.037  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc--hHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD--GFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~~~~  130 (197)
                      .+++.+||.+|||. |.++..+++..+...++++|.+++-.+.+++.-..       .-+.....|  ....... ....
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-------DCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-------cccCCccchhhhhhhHhhhhcCC
Confidence            35668999999987 66667777766656899999999999999885211       011111111  1222221 2467


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~  171 (197)
                      +|+++-..-          .+..++++.+.++++ |.+++..
T Consensus        99 ~d~vie~~G----------~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          99 VDYSLDCAG----------TAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             BSEEEESSC----------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             CcEEEEecc----------cchHHHHHHHHhhcCCeEEEecC
Confidence            999985441          156889999999996 9998865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.22  E-value=0.00026  Score=49.26  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEeC-C-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCc
Q psy4592          55 HPNPKKVLIVGG-G-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~  130 (197)
                      .+++.+||.+|+ | .|.++..+++..+...++++|.+++-.+.+++.-..       ..+.....|..+.+..  ..+.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-------YVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-------eeeccCCcCHHHHHHHHhhccc
Confidence            356689999997 3 444455566655557999999999999999875210       0111111233332322  2456


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+....          ....++.+.+.++|+|.+++..
T Consensus        98 ~d~vid~~g----------~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          98 VDAVIDLNN----------SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             EEEEEESCC----------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             chhhhcccc----------cchHHHhhhhhcccCCEEEEec
Confidence            999886542          1557788899999999998874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=0.00062  Score=47.04  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             CCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      +++.+||.+|+|.- .++..+++..+ .+++++|.+++-++.+++.-.       ..-+.....|..+.+......+|.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGA-------SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCc-------cccccccchhHHHHHHHhhcCCccc
Confidence            56789999998753 34455666655 799999999999999987521       1111111223333333222334544


Q ss_pred             EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +.+..          ..+.++.+.+.|+|+|++++..
T Consensus        98 i~~~~----------~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          98 LVTAV----------SNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EECCS----------CHHHHHHHHTTEEEEEEEEECC
T ss_pred             ccccc----------cchHHHHHHHHhcCCcEEEEEE
Confidence            44331          1457788999999999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.15  E-value=0.001  Score=46.89  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CCCeEEEEeCCchHh-HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCC--CCCCe------------EEEEcchH
Q psy4592          57 NPKKVLIVGGGDGGV-AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL--SDPRL------------TVHVGDGF  121 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--~~~~~------------~~~~~d~~  121 (197)
                      +|.+|+.||+|.-++ +...++..+ +.++++|++++.++..+.....+-.-.  .....            ++.... .
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG-A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~-~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ-A  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH-H
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH-H
Confidence            467999999997654 344555555 799999999999988887654220000  00000            011111 1


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      +.+...-...|+|+.....+....+.|.+    +++.+.+|||.+++=
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit----~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLIT----EEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSC----HHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeeh----HHHHHhcCCCcEEEE
Confidence            11222234689999988877777777777    455668999999884

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.08  E-value=0.0039  Score=47.47  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+.+|+|+.||.|++...+.+.+ ...+.++|+++.+++..+.|++..           .++|+.+........+|+++.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhcceeeeeec
Confidence            45799999999999998887664 456788999999999999998631           136776654444467999999


Q ss_pred             CCCCC-CC----------CCcccccHHHHHHHHhhcCCCcEEEEEcCCC--CcChhHHHHHHHHHHhh
Q psy4592         137 DSSDP-VG----------PAESLFQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCASV  191 (197)
Q Consensus       137 ~~~~~-~~----------~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~  191 (197)
                      .+|.. .+          +...++ .+++ .+.+.++|.=+++=|+...  ......++.+...+++.
T Consensus        78 gpPCq~fS~ag~~~g~~d~r~~l~-~~~~-~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~l  143 (327)
T d2c7pa1          78 GFPCQAFSISGKQKGFEDSRGTLF-FDIA-RIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHH-HHHH-HHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhcCCcccchhHH-HHHH-HHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhc
Confidence            98752 22          111122 2333 3456789987666565332  12334566666666543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00054  Score=47.32  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++.+||..|+|.-++. ..+++..+ .++++++.+++-++.+++.-..       .-+.....|..+.+......+|.
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~-------~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGAD-------LVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCS-------EEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCcc-------eecccccchhhhhcccccCCCce
Confidence            356689999999865544 44555544 5899999999999999884211       01111112433434432334555


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.+..          ....++.+.+.|+|+|.+++..
T Consensus        97 ~v~~~~----------~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAV----------SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSC----------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             EEeecC----------CHHHHHHHHHHhccCCceEecc
Confidence            555442          1567899999999999999864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.88  E-value=0.0011  Score=50.24  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=76.7

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS  139 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~  139 (197)
                      +|+|+-||.|++...+...+ ...+.++|+++.+.+..+.|++          -+++.+|+.+.-...-...|+++..+|
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCCHhHcccccEEeeccc
Confidence            79999999999987776553 4567799999999999988864          245678887754444567999999987


Q ss_pred             CCC-CC---CcccccH--HH---HHHHHhhcCCCcEEEEEcCCC--CcChhHHHHHHHHHH
Q psy4592         140 DPV-GP---AESLFQA--SY---FELMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCA  189 (197)
Q Consensus       140 ~~~-~~---~~~l~~~--~~---~~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~  189 (197)
                      ... +.   ......+  .+   +-.+.+.++|.-+++=|+...  +.....+..++..+.
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~  131 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFD  131 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHh
Confidence            532 21   1111111  11   223557789987777666332  123345555555544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.0015  Score=45.59  Aligned_cols=96  Identities=18%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      .++++||..|.  |.|.++..+++..+ +++.++.-+++-.+.+++.-.       ..-+.....|..+.+..  ....+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga-------~~vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGV-------EYVGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCC-------SEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccccc-------cccccCCccCHHHHHHHHhCCCCE
Confidence            45679999884  45566677776655 677787778888888876421       11112222344444433  24579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      |+|+....           .+.++.+.+.|+++|+++..
T Consensus        96 d~v~d~~g-----------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLA-----------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCC-----------THHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEeccc-----------chHHHHHHHHhcCCCEEEEE
Confidence            99996552           23567888999999999985

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0053  Score=43.09  Aligned_cols=95  Identities=11%  Similarity=0.068  Sum_probs=63.2

Q ss_pred             CeEEEEe--CCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592          59 KKVLIVG--GGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG--~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~  135 (197)
                      ..||..|  .|.|.++..+++..+...++++..+++-...+.+.+..      ..-+++...|..+.+.. ..+.+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEeeccchhHHHHHHHHhccCceEEE
Confidence            6799988  46778889999876655677777776655544444332      11233333455554544 356799998


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      -..-           .+.++...+.|+++|+++..
T Consensus       106 D~vG-----------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 DNVG-----------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ecCC-----------chhHHHHhhhccccccEEEe
Confidence            4441           45778999999999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.74  E-value=0.0055  Score=42.58  Aligned_cols=100  Identities=10%  Similarity=-0.004  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc--hHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD--GFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~~~~  130 (197)
                      .+++.+||.+|+|..++. ..+++..+..+|+++|.+++-++.+++.-..       .-+.+...|  ..+.... ....
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-------~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-------EEEcCCCchhHHHHHHHHhcCCC
Confidence            356789999999865544 4455655557899999999999999885211       111111222  2222222 3457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCC-CcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRP-GGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp-gG~l~~~~  171 (197)
                      +|.|+-..-     .     ...+++....+++ +|.+++..
T Consensus        98 ~d~vid~~g-----~-----~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          98 VDYAVECAG-----R-----IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             BSEEEECSC-----C-----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CcEEEEcCC-----C-----chHHHHHHHHHHHhcCceEEEE
Confidence            999986542     1     4455666666655 68888755

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.0046  Score=42.53  Aligned_cols=92  Identities=18%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             CeEEEEeCCc-h-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD-G-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++|+.||||. | .++..+.+.....+++++|.+++.++.+++.-.          +.....+...   ......|+|+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----------~~~~~~~~~~---~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----------IDEGTTSIAK---VEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----------CSEEESCGGG---GGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----------chhhhhhhhh---hhccccccccc
Confidence            3699999985 3 345556555544689999999999999987521          1111122111   11245799998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ..+.     ..  ..+.++++.+.++++..+.-.
T Consensus        69 a~p~-----~~--~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          69 SSPV-----RT--FREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             CSCH-----HH--HHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCc-----hh--hhhhhhhhhcccccccccccc
Confidence            7741     11  266788888999887766543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0056  Score=42.11  Aligned_cols=96  Identities=18%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          55 HPNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        55 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++.+||.+|+|. |.++..+++..+ +++++++.+++-.+.+++.-.         . .++...-.+......+.+|.
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGa---------d-~~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGA---------D-EVVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTC---------S-EEEETTCHHHHHTTTTCEEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCC---------c-EEEECchhhHHHHhcCCCce
Confidence            36678999999874 445566777655 677789999988888877521         1 12222212222223467999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ++.....     .     ..++...+.++++|.+++..
T Consensus        97 vid~~g~-----~-----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          97 ILNTVAA-----P-----HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEECCSS-----C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             eeeeeec-----c-----hhHHHHHHHHhcCCEEEEec
Confidence            9865421     1     13477788999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00087  Score=51.39  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI  134 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I  134 (197)
                      |.+|+|+.||.|++...+...+- ...+.++|+++.+.+..+.+++         ...+..+|+.+....  .....|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCccEE
Confidence            56899999999998877755431 1346799999999999998874         234556676643221  12368999


Q ss_pred             EECCCC
Q psy4592         135 ITDSSD  140 (197)
Q Consensus       135 ~~~~~~  140 (197)
                      +..+|.
T Consensus        73 ~ggpPC   78 (343)
T d1g55a_          73 LMSPPC   78 (343)
T ss_dssp             EECCC-
T ss_pred             Eeeccc
Confidence            999885

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.55  E-value=0.0015  Score=48.60  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             eEEEEcchHHHHhh-cCCceeEEEECCCCCCCCC-------cccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         113 LTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPA-------ESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       113 ~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~-------~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      --++.+|..+.+.. +++++|+|+.|||......       ..-+....++++.++|||+|.++++...
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence            45778999998876 4689999999999644211       0011256778999999999999998644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.55  E-value=0.0045  Score=43.16  Aligned_cols=100  Identities=8%  Similarity=-0.036  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc--hHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD--GFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~~~~  130 (197)
                      .+++..|+.+|+|..++. ..+++..+..+|+++|.+++-++.|++.-..       .-+.....|  ....... ....
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------~~in~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------ECISPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------EEECccccchHHHHHHHHhcccc
Confidence            356789999999865544 4455655657999999999999999987321       111111122  1112221 2457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhc-CCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRAL-RPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L-kpgG~l~~~~  171 (197)
                      +|.++-...     .     ...++.....+ +.+|.+++..
T Consensus       100 ~d~vi~~~g-----~-----~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         100 VGYTFEVIG-----H-----LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CCEEEECSC-----C-----HHHHHHHHTTSCTTTCEEEECS
T ss_pred             ceEEEEeCC-----c-----hHHHHHHHHHhhcCCeEEEEEE
Confidence            998886542     1     33445555445 5558988865

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0028  Score=44.00  Aligned_cols=97  Identities=12%  Similarity=0.033  Sum_probs=65.4

Q ss_pred             CCCCeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592          56 PNPKKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~  131 (197)
                      +++++||..|+|+  |.++..+++..+ +++++++.+++-.+.+++.-.       ..-+.....|..+.+..  ....+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~lGa-------~~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGA-------WQVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhcCC-------eEEEECCCCCHHHHHHHHhCCCCe
Confidence            5567999997764  556677777655 799999999999999887521       11222223454444443  24579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+....           .+.++...+.|+++|.+++..
T Consensus        99 d~v~d~~g-----------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          99 RVVYDSVG-----------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEECSC-----------GGGHHHHHHTEEEEEEEEECC
T ss_pred             EEEEeCcc-----------HHHHHHHHHHHhcCCeeeecc
Confidence            98875441           234578899999999988754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.42  E-value=0.0019  Score=48.79  Aligned_cols=46  Identities=11%  Similarity=0.036  Sum_probs=40.1

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      .++..|||.-||+|..+.++.+.+  -..+++|++++.++.|++++..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHHh
Confidence            566899999999999988877764  5889999999999999998764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.0017  Score=45.49  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592          56 PNPKKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D  132 (197)
                      +.+.+||.-|.+.  |.++..+++..+ ++++++--+++-.+.+++.-.       ..-+... .+..+.... ..+.+|
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~lGa-------~~vi~~~-~~~~~~~~~~~~~gvD  100 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVLGA-------KEVLARE-DVMAERIRPLDKQRWA  100 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHTTC-------SEEEECC----------CCSCCEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHhccc-------ceeeecc-hhHHHHHHHhhccCcC
Confidence            4457899999654  456677777655 788888888888888887421       1111111 111121222 356899


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      +|+-...           ...++...+.|+|+|+++....
T Consensus       101 ~vid~vg-----------g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         101 AAVDPVG-----------GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEECST-----------TTTHHHHHHTEEEEEEEEECSC
T ss_pred             EEEEcCC-----------chhHHHHHHHhCCCceEEEeec
Confidence            8885542           2256888999999999998753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.29  E-value=0.002  Score=47.21  Aligned_cols=45  Identities=16%  Similarity=0.020  Sum_probs=38.9

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP  102 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~  102 (197)
                      .++..|||.-+|+|..+.++.+..  -+.+++|++++.++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            566799999999999988877765  588999999999999998763

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.28  E-value=0.0035  Score=45.83  Aligned_cols=58  Identities=16%  Similarity=0.310  Sum_probs=42.7

Q ss_pred             EEEEcchHHHHhh-cCCceeEEEECCCCCCCCCc--c--------cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         114 TVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAE--S--------LFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       114 ~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~--~--------l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +++++|..+.+.. +++++|+|+.|||.......  .        -+..+.+++++++|+|+|.+++..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            5889999998876 46789999999996543210  0        011357788999999999888653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.26  E-value=0.015  Score=39.93  Aligned_cols=100  Identities=11%  Similarity=-0.031  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE--EcchHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH--VGDGFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~-~~~~  130 (197)
                      .+++.+||..|+|.. .++..+++..+...+++++.+++-.+.+++.=..       .-+.+.  ..+..+.+.. ....
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            366789999998743 3445566655557899999999999999875211       011110  1223333333 3457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +|+|+...-          ....++.+...+++||.+++..
T Consensus        99 ~D~vid~~G----------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          99 VDYSFECIG----------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             BSEEEECSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEeeecCC----------CHHHHHHHHHhhcCCceeEEEE
Confidence            999986542          1567889999999998776653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0081  Score=41.49  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=59.4

Q ss_pred             CCCCeEEEEeC-C-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGG-G-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      +++++||..|. | .|..+..+++..+ +++++++.+++-.+.+++.-.         ..-+-..|..+... ....+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lGa---------~~~i~~~~~~~~~~-~~~g~D~   94 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALGA---------EEAATYAEVPERAK-AWGGLDL   94 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTTC---------SEEEEGGGHHHHHH-HTTSEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccccccccccc---------ceeeehhhhhhhhh-ccccccc
Confidence            56679999985 3 3456666777655 689999999988888877421         11121223222222 2467999


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+- ..   +.        .+++..+.|+|+|.+++..
T Consensus        95 v~d-~~---G~--------~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          95 VLE-VR---GK--------EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEE-CS---CT--------THHHHHTTEEEEEEEEEC-
T ss_pred             ccc-cc---ch--------hHHHHHHHHhcCCcEEEEe
Confidence            875 21   11        2367788999999998753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.21  E-value=0.0053  Score=46.18  Aligned_cols=64  Identities=14%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             CCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcc---c-------ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         111 PRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAES---L-------FQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~---l-------~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      .+-++++||..+.+.. +++++|+|+.|||.....+..   .       +-.+.+++++++|+|+|.++++....
T Consensus        11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~   85 (320)
T d1booa_          11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   85 (320)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence            4568999999998876 467999999999965431110   0       01456889999999999999987554

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.14  E-value=0.0016  Score=48.23  Aligned_cols=115  Identities=12%  Similarity=0.050  Sum_probs=73.7

Q ss_pred             CCCCCCeEEEEeCCchHhHHHHhcCC----------------------------------------CCccEEEEEcCHHH
Q psy4592          54 SHPNPKKVLIVGGGDGGVAREVLKHP----------------------------------------SVESAYLVEIDNRV   93 (197)
Q Consensus        54 ~~~~~~~vLdiG~G~G~~~~~l~~~~----------------------------------------~~~~v~~ve~~~~~   93 (197)
                      ....+..++|-.||+|.+.++.+...                                        ....+.+.|+++.+
T Consensus        47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a  126 (249)
T d1o9ga_          47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA  126 (249)
T ss_dssp             SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence            34556789999999999988765420                                        01246788999999


Q ss_pred             HHHHH---hhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCceeEEEECCCCCCCC--Ccccc---cHHHHHHHHhhc
Q psy4592          94 IEVSK---KYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQEFDVIITDSSDPVGP--AESLF---QASYFELMSRAL  161 (197)
Q Consensus        94 ~~~a~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~I~~~~~~~~~~--~~~l~---~~~~~~~~~~~L  161 (197)
                      ++.|+   .+...  .++ ...+++...|+.+..+.    ....+++||+|||....-  .....   -..++..+.+.+
T Consensus       127 i~~A~~~r~n~~~--Agl-~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~  203 (249)
T d1o9ga_         127 AQAARRLRERLTA--EGG-ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL  203 (249)
T ss_dssp             HHHHHHHHHHHHH--TTS-SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH--cCC-CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence            98884   34432  222 35788988887532221    245689999999853321  11111   146677788889


Q ss_pred             CCCcEEEEEc
Q psy4592         162 RPGGIVCSQA  171 (197)
Q Consensus       162 kpgG~l~~~~  171 (197)
                      ..-..+++..
T Consensus       204 p~~s~~~it~  213 (249)
T d1o9ga_         204 PAHAVIAVTD  213 (249)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCcEEEEeC
Confidence            7666777654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.11  E-value=0.014  Score=40.52  Aligned_cols=97  Identities=10%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             CCCCeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh-cCCce
Q psy4592          56 PNPKKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE-HQQEF  131 (197)
Q Consensus        56 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~~  131 (197)
                      +++.+||..|++.  |..+..+++..+ ++++++.-+++-.+.+++.-.       ..-+.....+..+. ... ....+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGF-------DAAFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhh-------hhhcccccccHHHHHHHHhhcCCC
Confidence            5678999988865  345666777665 799999999998888887521       10111112222222 222 34579


Q ss_pred             eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+|+-...           .+.+++..+.|+++|.++...
T Consensus       100 d~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         100 DCYFDNVG-----------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEEEESSC-----------HHHHHHHGGGEEEEEEEEECC
T ss_pred             ceeEEecC-----------chhhhhhhhhccCCCeEEeec
Confidence            99985431           557899999999999999863

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.08  E-value=0.017  Score=39.71  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC--CC-CCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV--GL-SDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ++|..||+|..+.+.+......+..|+.+|.+++-++.+++.-.....  .. ..........|..+.+    ..+|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCEEE
Confidence            588999999876655433211226999999999888877764211100  00 0112223345655544    3489999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ...+.     ..  ....++++...|+++-.+++.
T Consensus        78 i~v~~-----~~--~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          78 IVVPA-----IH--HASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             ECSCG-----GG--HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEch-----hH--HHHHHHHhhhccCCCCEEEEe
Confidence            86642     11  277899999999999877754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.04  E-value=0.024  Score=39.02  Aligned_cols=99  Identities=9%  Similarity=-0.032  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~  130 (197)
                      .+++.+||.+|+|.++ +...+++..+...|+++|.+++-.+.+++.-..       ..+....  .+..+.... ..+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCchhHHHHHHHHHhcCC
Confidence            4667899999997655 334455555657999999999999999886321       0111100  112222222 3457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCc-EEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGG-IVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG-~l~~~  170 (197)
                      +|+|+-..-     .     ...++.+...++++| .+++.
T Consensus        99 ~D~vid~~G-----~-----~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          99 VDFSFEVIG-----R-----LDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             BSEEEECSC-----C-----HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCEEEecCC-----c-----hhHHHHHHHHHhcCCcceEEe
Confidence            999886542     1     456777888888875 55544

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.95  E-value=0.062  Score=39.74  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeEEEECC
Q psy4592          62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDVIITDS  138 (197)
Q Consensus        62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~I~~~~  138 (197)
                      +.+-+|+-.++..+++..  .+...+|+-|+-.+..++++..      ..+++++..|..+.+..   +.++==+|++||
T Consensus        87 l~~YPGSP~ia~~llR~~--Drl~l~ELHp~e~~~L~~~~~~------~~~~~v~~~DG~~~l~allPP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCCC--CceEEeecCHHHHHHHHHHhcc------CCCceEEcCchHHHHHhhCCCCCCceEEEecC
Confidence            457788888877776554  6999999999999999988763      47999999999988764   234556999999


Q ss_pred             CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592         139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV  191 (197)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (197)
                      +.....+..-. .+.+.++.+.. |.|+++++-  |.........+.+.++..
T Consensus       159 pYE~k~ey~~v-~~~l~~a~kr~-~~g~~~iWY--Pi~~~~~~~~~~~~l~~~  207 (271)
T d2oo3a1         159 SYERKEEYKEI-PYAIKNAYSKF-STGLYCVWY--PVVNKAWTEQFLRKMREI  207 (271)
T ss_dssp             CCCSTTHHHHH-HHHHHHHHHHC-TTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHH-HHHHHHHHHhC-CCceEEEEe--eccCcHHHHHHHHHHHhc
Confidence            86554332111 33444444442 677777653  556667777777777655

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.67  E-value=0.0038  Score=46.24  Aligned_cols=46  Identities=20%  Similarity=0.102  Sum_probs=39.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG  103 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~  103 (197)
                      .++..|||.-+|+|..+.+..+..  -+.+++|+++...+.|++++..
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            567799999999999888877664  5899999999999999988753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.45  E-value=0.028  Score=38.21  Aligned_cols=88  Identities=17%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             CeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++|..||+|.  +.++..+.+.+  .+|+++|.+++.++.+++.-.          +.....+. +.    ....|+|+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~----------~~~~~~~~-~~----~~~~DiIil   63 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQL----------VDEAGQDL-SL----LQTAKIIFL   63 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTS----------CSEEESCG-GG----GTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhc----------cceeeeec-cc----ccccccccc
Confidence            3688999983  33445555443  689999999998888776421          11112222 11    245899997


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      ..|     ...  .++.++++...|+++-.++-.
T Consensus        64 avp-----~~~--~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          64 CTP-----IQL--ILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             CSC-----HHH--HHHHHHHHGGGSCTTCEEEEC
T ss_pred             cCc-----Hhh--hhhhhhhhhhhcccccceeec
Confidence            664     111  267888888888888876543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.37  E-value=0.092  Score=35.72  Aligned_cols=99  Identities=11%  Similarity=0.032  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-c-hHHHHhh-cCCc
Q psy4592          55 HPNPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-D-GFRFMSE-HQQE  130 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d-~~~~~~~-~~~~  130 (197)
                      .+++.+||.+|+|.++.... +++......++++|.+++-++.+++.=.       ..-+..... + ..+.... ....
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA-------d~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-------TDFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC-------cEEEcCCCcchhHHHHHHhhccCC
Confidence            35668999999998654433 4444455789999999999999988521       111111111 1 1222222 2457


Q ss_pred             eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      +|+|+-..-     .     ...++.+...++++|..++.
T Consensus        99 ~d~vid~~G-----~-----~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          99 VDFSLECVG-----N-----VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             BSEEEECSC-----C-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             cceeeeecC-----C-----HHHHHHHHHHhhCCCcceeE
Confidence            999985542     1     45667777777776544443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.35  E-value=0.094  Score=33.92  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCceeEEEE
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D~I~~  136 (197)
                      +|+.+|+  |..+..+.+......++.+|.+++..+.++.           ..+.++.||+.+  .+.. .-++++.+++
T Consensus         2 HivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           2 HVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             CEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEEE
Confidence            5666665  5577777776666789999999998876644           246788898754  2332 3567888987


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                      ....     ..  .-.+.-...+.+.|...++....++
T Consensus        69 ~~~~-----d~--~n~~~~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          69 NLES-----DS--ETIHCILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             CCSS-----HH--HHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred             eccc-----hh--hhHHHHHHHHHHCCCceEEEEEcCH
Confidence            6631     11  0223445567789999888876553

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.24  Score=35.79  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=52.1

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-------
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------  125 (197)
                      .++.+|.-|++.| ++.+    +++.+  .+|..++.+++-++...+.+..     .+.++..+.+|..+.-.       
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCHHHHHHHHHH
Confidence            4567777788776 4444    44443  7899999999888766665543     23578888888764311       


Q ss_pred             --hcCCceeEEEECCCCCC
Q psy4592         126 --EHQQEFDVIITDSSDPV  142 (197)
Q Consensus       126 --~~~~~~D~I~~~~~~~~  142 (197)
                        ...+..|+++.+.....
T Consensus        78 i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHTCCCSEEEECCCCCC
T ss_pred             HHHHcCCCceeEeeccccc
Confidence              12467899998875433

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.57  E-value=0.37  Score=34.79  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=51.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +.+.+|..|++.| ++.++++.  ....+|..++.+++-++.+.+.+..     ...++..+.+|+.+.-      .   
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~-----~g~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-----FGYESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4567888887665 55554432  1237899999999888777666543     2346888888876421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|+++.+...
T Consensus        83 ~~~g~iDilvnnag~   97 (251)
T d2c07a1          83 TEHKNVDILVNNAGI   97 (251)
T ss_dssp             HHCSCCCEEEECCCC
T ss_pred             HhcCCceeeeecccc
Confidence            124689999987653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.39  E-value=0.35  Score=35.10  Aligned_cols=76  Identities=9%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--------  124 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--------  124 (197)
                      +++.||..|++.| ++.+++    +.+  .+|..++.+++-++.+.+.+..     ...++.++.+|+.+.-        
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~~~~D~s~~~~~~~~~~~   76 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWRE-----KGLNVEGSVCDLLSRTERDKLMQT   76 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCCceEEEeecCCHHHHHHHHHH
Confidence            5678999998765 444443    343  6899999999877766665543     2356778888766321        


Q ss_pred             -hhc-CCceeEEEECCCC
Q psy4592         125 -SEH-QQEFDVIITDSSD  140 (197)
Q Consensus       125 -~~~-~~~~D~I~~~~~~  140 (197)
                       ... .+..|+++.+...
T Consensus        77 ~~~~~~g~idilinnag~   94 (258)
T d1ae1a_          77 VAHVFDGKLNILVNNAGV   94 (258)
T ss_dssp             HHHHTTSCCCEEEECCCC
T ss_pred             HHHHhCCCcEEEeccccc
Confidence             111 3578888887643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.24  Score=36.03  Aligned_cols=80  Identities=15%  Similarity=0.043  Sum_probs=50.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +.+.||..|++.| ++.++++..  .+.+|+.++.+++-++.+.+.+...  + ...++.++.+|+.+.-      .   
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~--~-~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA--G-YPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--T-CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--C-CCceEEEEEccCCCHHHHHHHHHHHH
Confidence            4568999998776 444444321  2278999999998777665544321  0 1236777888876421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-+..|++|.+...
T Consensus        85 ~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          85 SQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhcCCCCEEEecccc
Confidence            123579999988643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.21  E-value=0.11  Score=35.57  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             CeEEEEeCCchHhH---HHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE-EEcchHHHHhhcCCce
Q psy4592          59 KKVLIVGGGDGGVA---REVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV-HVGDGFRFMSEHQQEF  131 (197)
Q Consensus        59 ~~vLdiG~G~G~~~---~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~  131 (197)
                      -+|..||+|+.+..   ..+....   ...+++.+|++++-++.....+...... .....++ ...|..+.+.    -.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~eal~----~A   78 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-KAPDIEFAATTDPEEAFT----DV   78 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-HCTTSEEEEESCHHHHHS----SC
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH-hCCCcceEecCChhhccC----CC
Confidence            47889999975432   2222222   2358999999998765322211110000 1123333 3456555454    37


Q ss_pred             eEEEECC
Q psy4592         132 DVIITDS  138 (197)
Q Consensus       132 D~I~~~~  138 (197)
                      |+|+...
T Consensus        79 D~Vvita   85 (167)
T d1u8xx1          79 DFVMAHI   85 (167)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.61  Score=33.40  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--h---hc
Q psy4592          57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--S---EH  127 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---~~  127 (197)
                      .++++|..|++.| ++.++    ++.+  .+|..++.+++-++...+.++         .+..++.|+.+.-  .   ..
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~~~   73 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATG--ARVVAVSRTQADLDSLVRECP---------GIEPVCVDLGDWEATERALGS   73 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHST---------TCEEEECCTTCHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC---------CCeEEEEeCCCHHHHHHHHHH
Confidence            5679999998775 44444    3443  689999999988776665442         3566677765321  1   12


Q ss_pred             CCceeEEEECCCC
Q psy4592         128 QQEFDVIITDSSD  140 (197)
Q Consensus       128 ~~~~D~I~~~~~~  140 (197)
                      -++.|++|.+...
T Consensus        74 ~g~iDilVnnAg~   86 (244)
T d1pr9a_          74 VGPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             hCCceEEEecccc
Confidence            4689999988654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.62  E-value=0.7  Score=31.99  Aligned_cols=109  Identities=12%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CC-------CCCeEEEEcchHHHHhhcCCce
Q psy4592          60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LS-------DPRLTVHVGDGFRFMSEHQQEF  131 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~-------~~~~~~~~~d~~~~~~~~~~~~  131 (197)
                      +|..+|+|-=+++.++.-...+.+|+++|++++.++...+........ +.       ...--....|..+.+.    ..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~----~~   77 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL----DS   77 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH----TC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh----hC
Confidence            678899886554444332212268999999999988776542211000 00       0011123344444333    36


Q ss_pred             eEEEECCCCCCCCCccc---ccHHHHHHHHh---hcCCCcEEEEEcC
Q psy4592         132 DVIITDSSDPVGPAESL---FQASYFELMSR---ALRPGGIVCSQAG  172 (197)
Q Consensus       132 D~I~~~~~~~~~~~~~l---~~~~~~~~~~~---~LkpgG~l~~~~~  172 (197)
                      |+|+...+.+...+...   ......+.+..   .++++..+++.+.
T Consensus        78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence            89998877654322111   11344444444   4457777777653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.44  E-value=0.48  Score=34.17  Aligned_cols=77  Identities=12%  Similarity=0.112  Sum_probs=50.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|..|++.| ++.++++.  ....+|..++.+++.++.+.+.+..      ..++.++.+|+.+.-      .   
T Consensus         5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (251)
T d1zk4a1           5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDATE   77 (251)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4567877776655 55444432  1127899999999888877776643      347888888876421      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|++|.+.-.
T Consensus        78 ~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          78 KAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHSSCCEEEECCCC
T ss_pred             HHhCCceEEEecccc
Confidence            113578999987643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.42  E-value=0.59  Score=33.82  Aligned_cols=75  Identities=13%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh-
Q psy4592          57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~-  125 (197)
                      +++.+|..|++.| ++.++    ++.+  .+|..++.+++-++.+.+.+..     ...++.++.+|+.+.      +. 
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRS-----KGFKVEASVCDLSSRSERQELMNT   78 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCCceEEEeeCCCHHHHHHHHHH
Confidence            5678898888765 44444    3443  7899999998887766665543     234677888887532      11 


Q ss_pred             --hc-CCceeEEEECCC
Q psy4592         126 --EH-QQEFDVIITDSS  139 (197)
Q Consensus       126 --~~-~~~~D~I~~~~~  139 (197)
                        .. ..+.|+++.+.-
T Consensus        79 ~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          79 VANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHHTTTCCCEEEECCC
T ss_pred             HHHHhCCCceEEEECCc
Confidence              11 347999998864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.19  E-value=0.14  Score=32.33  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=59.7

Q ss_pred             hhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEc--CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH
Q psy4592          49 FLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEI--DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM  124 (197)
Q Consensus        49 ~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  124 (197)
                      ++|++..-.+++||.+|+|.=+....  +++.+  ++++.++.  +++....++.           .++++......+  
T Consensus         3 ~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~--   67 (113)
T d1pjqa1           3 HLPIFCQLRDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANE-----------GMLTLVEGPFDE--   67 (113)
T ss_dssp             CEEEEECCBTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTT-----------TSCEEEESSCCG--
T ss_pred             ccceEEEeCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHHhc-----------CCceeeccCCCH--
Confidence            45555556778999999998655433  33343  67777664  4555444422           356666554332  


Q ss_pred             hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592         125 SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL  174 (197)
Q Consensus       125 ~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~  174 (197)
                       ..-..+|+|+....     +     ++.-+++.+..++.|.++-.+..|
T Consensus        68 -~dl~~~~lv~~at~-----d-----~~~n~~i~~~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          68 -TLLDSCWLAIAATD-----D-----DTVNQRVSDAAESRRIFCNVVDAP  106 (113)
T ss_dssp             -GGGTTCSEEEECCS-----C-----HHHHHHHHHHHHHTTCEEEETTCT
T ss_pred             -HHhCCCcEEeecCC-----C-----HHHHHHHHHHHHHcCCEEEeCCCh
Confidence             11245788886652     1     344467777778888887554443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.18  E-value=0.14  Score=33.16  Aligned_cols=91  Identities=16%  Similarity=0.228  Sum_probs=55.2

Q ss_pred             CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCceeE
Q psy4592          59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D~  133 (197)
                      ++|+.+|+|.  ++..+++.  ..+..++.+|.||+.++.++..+          ...++.+|+.+  .+.. .-+.+|.
T Consensus         1 M~IvI~G~G~--~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a~~   68 (132)
T d1lssa_           1 MYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDADM   68 (132)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhhhh
Confidence            3688888864  44444432  12268999999999988776543          35678888764  2333 2467898


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVC  168 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~  168 (197)
                      +++-..     +..  ..-+.....+.+.+.-.++
T Consensus        69 vv~~t~-----~d~--~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          69 YIAVTG-----KEE--VNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEECCS-----CHH--HHHHHHHHHHHTTCCCEEE
T ss_pred             hcccCC-----cHH--HHHHHHHHHHHcCCceEEE
Confidence            887542     111  0123344556778875543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.07  E-value=0.8  Score=31.03  Aligned_cols=102  Identities=9%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             eEEEEeCCchH-hHHHHhcCCCCccEEEE-EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592          60 KVLIVGGGDGG-VAREVLKHPSVESAYLV-EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD  137 (197)
Q Consensus        60 ~vLdiG~G~G~-~~~~l~~~~~~~~v~~v-e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~  137 (197)
                      +|..||||.-+ .-....+..+..+++++ |.+++-.+...+.+..      .+..+ ...|..+.+..  ...|+|+..
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~------~~~~~-~~~~~~~ll~~--~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY------PESTK-IHGSYESLLED--PEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC------CTTCE-EESSHHHHHHC--TTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc------cccee-ecCcHHHhhhc--cccceeeec
Confidence            78899998633 21222233345677755 8888766554444332      12233 34677776654  568999886


Q ss_pred             CCCCCC----------------CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592         138 SSDPVG----------------PAESLFQASYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       138 ~~~~~~----------------~~~~l~~~~~~~~~~~~LkpgG~l~~~  170 (197)
                      .+....                .-+-..+.+-++++.++.+..|..+..
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v  122 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD  122 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEE
Confidence            542110                111112345556666666666665543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.03  E-value=0.71  Score=33.21  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             eEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---hcC
Q psy4592          60 KVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---EHQ  128 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---~~~  128 (197)
                      .+|.-|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+..     ...++..+.+|+.+.-      .   ..-
T Consensus         3 ValITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~-----~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           3 VALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ-----AGGHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            3466676654 55554432  1227899999999888766665543     2346888888876421      1   124


Q ss_pred             CceeEEEECCC
Q psy4592         129 QEFDVIITDSS  139 (197)
Q Consensus       129 ~~~D~I~~~~~  139 (197)
                      ++.|++|.+.-
T Consensus        77 g~iDilVnnAG   87 (255)
T d1gega_          77 GGFDVIVNNAG   87 (255)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCccEEEeccc
Confidence            68999998864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.95  E-value=0.016  Score=39.92  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             CCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----cCC
Q psy4592          57 NPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----HQQ  129 (197)
Q Consensus        57 ~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~  129 (197)
                      ++..||.-|.  |-|.++..+++..+ ++++++--+++-.+.+++.-.         .. ++  |..+....     ..+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~lGa---------d~-vi--~~~~~~~~~~~~~~~~   89 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQLGA---------SE-VI--SREDVYDGTLKALSKQ   89 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHHTC---------SE-EE--EHHHHCSSCCCSSCCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhhcc---------cc-eE--eccchhchhhhcccCC
Confidence            4457998885  34456677777765 789999988888888877521         11 11  22222111     145


Q ss_pred             ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      .+|+|+-..-           .+.+++..+.|+|+|.+++..
T Consensus        90 gvd~vid~vg-----------g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          90 QWQGAVDPVG-----------GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CEEEEEESCC-----------THHHHHHHTTEEEEEEEEECC
T ss_pred             CceEEEecCc-----------HHHHHHHHHHhccCceEEEee
Confidence            7999885541           457789999999999999865

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.94  E-value=0.92  Score=32.82  Aligned_cols=76  Identities=12%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++.+.+.+..      ..++.++.+|+.+.-      .   
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHHH
Confidence            5678999998776 44444432  1227899999999888777666543      235778888875321      1   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|++|.+.-
T Consensus        78 ~~~g~iD~lVnnAG   91 (268)
T d2bgka1          78 AKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCcceeccccc
Confidence            11357899998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.78  E-value=0.93  Score=32.56  Aligned_cols=76  Identities=13%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             CCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---E  126 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---~  126 (197)
                      ++.+|.-|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+..     ...++.++.+|+.+.-      .   .
T Consensus         2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~-----~g~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-----AGVEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            345677776654 55544432  1227899999999888776665543     2346888888875321      1   1


Q ss_pred             cCCceeEEEECCC
Q psy4592         127 HQQEFDVIITDSS  139 (197)
Q Consensus       127 ~~~~~D~I~~~~~  139 (197)
                      .-++.|++|.|.-
T Consensus        76 ~~g~iDilVnnAG   88 (257)
T d2rhca1          76 RYGPVDVLVNNAG   88 (257)
T ss_dssp             HTCSCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            2468999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.74  E-value=0.48  Score=31.58  Aligned_cols=123  Identities=15%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .+..+|-.||+|. |.....++...+..++..+|++++.++-...-+.................+..+.+    ...|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCCCeE
Confidence            3456888999875 33222222322345899999998765432221110000001122233334433333    336888


Q ss_pred             EECCCCCCCCC--------cccc--cHHHHHHHHhh---cCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592         135 ITDSSDPVGPA--------ESLF--QASYFELMSRA---LRPGGIVCSQAGTLWYSLDCVGNTLQ  186 (197)
Q Consensus       135 ~~~~~~~~~~~--------~~l~--~~~~~~~~~~~---LkpgG~l~~~~~~~~~~~~~~~~~~~  186 (197)
                      +.....+..+.        ..+.  +...++++.+.   ..|+|++++.++.    .+.+..+..
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP----vd~lt~~~~  141 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP----LDCMVKVMC  141 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS----HHHHHHHHH
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc----HHHHHHHHH
Confidence            88664322211        1111  12223333322   3699999886644    355554443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.74  E-value=0.79  Score=33.10  Aligned_cols=75  Identities=13%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh-
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~-  125 (197)
                      +++.+|..|.+.| ++.+    +++.+  .+|..++.+++.++.+.+.+..     ...++..+.+|+.+.      +. 
T Consensus         4 ~gK~alITGas~G-IG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~   75 (260)
T d1zema1           4 NGKVCLVTGAGGN-IGLATALRLAEEG--TAIALLDMNREALEKAEASVRE-----KGVEARSYVCDVTSEEAVIGTVDS   75 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT-----TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHH
Confidence            5678888887765 4444    44443  7899999999888877776654     234688888886532      11 


Q ss_pred             --hcCCceeEEEECCC
Q psy4592         126 --EHQQEFDVIITDSS  139 (197)
Q Consensus       126 --~~~~~~D~I~~~~~  139 (197)
                        ..-+..|++|.+.-
T Consensus        76 ~~~~~g~iDilVnnaG   91 (260)
T d1zema1          76 VVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCCeehhhhc
Confidence              11357999998754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.69  E-value=0.9  Score=32.89  Aligned_cols=107  Identities=12%  Similarity=0.049  Sum_probs=61.2

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~  125 (197)
                      +++.+|..|++.| ++.+    +++.+  .+|+.++.+ ++.++...+.+..     ...++.++.+|..+.-      .
T Consensus        17 ~gK~~lITGas~G-IG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~D~~~~~~v~~~~~   88 (272)
T d1g0oa_          17 EGKVALVTGAGRG-IGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKK-----NGSDAACVKANVGVVEDIVRMFE   88 (272)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC--CEEEEEeCCchHHHHHHHHHHHh-----hCCceeeEeCCCCCHHHHHHHHH
Confidence            4578888888765 4444    44443  788888876 4555544443332     2346888888876421      1


Q ss_pred             ---hcCCceeEEEECCCCCCCCCcccccH---------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 ---EHQQEFDVIITDSSDPVGPAESLFQA---------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ---~~~~~~D~I~~~~~~~~~~~~~l~~~---------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                         ...++.|+++.+..........-.+.               .+.+.+...|+.+|..++..
T Consensus        89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence               11357899998875332211111111               23556667788888766654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.85  Score=33.69  Aligned_cols=83  Identities=7%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+..........++..+.+|+.+.-      .   
T Consensus        11 ~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          11 QGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            5678888887765 55444432  1227899999998776655443221000012346888888876321      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|++|.+...
T Consensus        90 ~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          90 DTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeEEEEeeccc
Confidence            113579999988643

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.51  E-value=0.13  Score=39.64  Aligned_cols=48  Identities=23%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEeCCchHhHHHHhcCC-------CCccEEEEEcCHHHHHHHHhhcC
Q psy4592          55 HPNPKKVLIVGGGDGGVAREVLKHP-------SVESAYLVEIDNRVIEVSKKYLP  102 (197)
Q Consensus        55 ~~~~~~vLdiG~G~G~~~~~l~~~~-------~~~~v~~ve~~~~~~~~a~~~~~  102 (197)
                      .+.+.+|+|+|+|+|.++..+++..       ...+++.+|.++...+.-++.+.
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            3455689999999999987665421       23568999999988777666654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.41  E-value=0.16  Score=35.12  Aligned_cols=97  Identities=15%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             CCCCeEEEEeCCc---hHhHHHHhcCCCCccEEEEE-c---CHHHHHHHHhhcCCCCCCCCCCCeEEEEcc-------hH
Q psy4592          56 PNPKKVLIVGGGD---GGVAREVLKHPSVESAYLVE-I---DNRVIEVSKKYLPGMAVGLSDPRLTVHVGD-------GF  121 (197)
Q Consensus        56 ~~~~~vLdiG~G~---G~~~~~l~~~~~~~~v~~ve-~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d-------~~  121 (197)
                      +++.+||.+.+|+   |..+..+++..+ .+++++- -   .++..+.+++. ..      ..-+..-..|       +.
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~G-a~vI~~v~~~~~~~~~~~~~~~l-Ga------d~vi~~~~~~~~~~~~~v~   98 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPNLDEVVASLKEL-GA------TQVITEDQNNSREFGPTIK   98 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCCTTHHHHHHHHHHH-TC------SEEEEHHHHHCGGGHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcC-CeEEEEEecccccchHHhhhhhc-cc------cEEEeccccchhHHHHHHH
Confidence            4556899984443   445566777655 4655553 2   23344444443 11      1111110011       11


Q ss_pred             HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         122 RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       122 ~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      +........+|+|+-..           ....+....+.|+|+|.++...
T Consensus        99 ~~~~~~g~~vdvv~D~v-----------g~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          99 EWIKQSGGEAKLALNCV-----------GGKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHHTCCEEEEEESS-----------CHHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHhhccCCceEEEECC-----------CcchhhhhhhhhcCCcEEEEEC
Confidence            11222356799998432           1446688889999999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.36  E-value=1  Score=32.28  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~  126 (197)
                      +++.+|.-|++.| ++.+    +++.+  .+|..++.+++-++.+.+.+.        .+..++.+|+.+.      +..
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~   73 (244)
T d1nffa_           5 TGKVALVSGGARG-MGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDT   73 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHH
Confidence            5678888888766 4444    44443  689999999988877666543        3567777876532      111


Q ss_pred             ---cCCceeEEEECCCC
Q psy4592         127 ---HQQEFDVIITDSSD  140 (197)
Q Consensus       127 ---~~~~~D~I~~~~~~  140 (197)
                         .-+..|+++.+.-.
T Consensus        74 ~~~~~g~idilinnAG~   90 (244)
T d1nffa_          74 AVTAFGGLHVLVNNAGI   90 (244)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCeEEEECCcc
Confidence               13578999988643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.24  E-value=1.3  Score=31.93  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CCCeEEEEeCCch---HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h--
Q psy4592          57 NPKKVLIVGGGDG---GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--  125 (197)
                      +++.+|..|.+.|   .++..+++.+  .+|..++.+++-++...+.+.        .++.++.+|+.+.-      .  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATARELG--------DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC--------CceEEEEcccCCHHHHHHHHHHH
Confidence            5678999998776   2333344443  789999999877665555432        36788888876321      1  


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ..-++.|++|.+.-.
T Consensus        74 ~~~~g~iDilVnnAg~   89 (254)
T d1hdca_          74 REEFGSVDGLVNNAGI   89 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCccEEEecCcc
Confidence             113578999987643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.80  E-value=1.1  Score=32.10  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~--  126 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+.        .++..+.+|+.+.-      ..  
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--------~~~~~~~~Dvt~~~~v~~~~~~~~   74 (256)
T d1k2wa_           4 DGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEIG--------PAACAIALDVTDQASIDRCVAELL   74 (256)
T ss_dssp             TTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--------TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------CceEEEEeeCCCHHHHHHHHHHHH
Confidence            4578888888765 44444432  122799999999887776655442        36777888765321      11  


Q ss_pred             -cCCceeEEEECCCC
Q psy4592         127 -HQQEFDVIITDSSD  140 (197)
Q Consensus       127 -~~~~~D~I~~~~~~  140 (197)
                       .-++.|++|.+.-.
T Consensus        75 ~~~g~iDilVnnAg~   89 (256)
T d1k2wa_          75 DRWGSIDILVNNAAL   89 (256)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCccEEEeeccc
Confidence             13579999988653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.45  E-value=0.49  Score=32.67  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC---CCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG---MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+|..||+|..+.+.+......+.+|+....+++.++...+.-..   +.+..-++++.+ ..|..+.+.    ..|+|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~a~~----~ad~ii   82 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEKAYN----GAEIIL   82 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHHHHT----TCSCEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhhccC----CCCEEE
Confidence            379999999887766533322235899999999988866543111   101111345654 466655543    368888


Q ss_pred             ECCC
Q psy4592         136 TDSS  139 (197)
Q Consensus       136 ~~~~  139 (197)
                      ...|
T Consensus        83 iavP   86 (189)
T d1n1ea2          83 FVIP   86 (189)
T ss_dssp             ECSC
T ss_pred             EcCc
Confidence            7664

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.43  E-value=0.69  Score=33.43  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~  126 (197)
                      +++.+|..|++.| ++.+    +++.+  .+|..++.+++-++.+.+.+..     ...++..+.+|+.+.      +..
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQK-----KGFQVTGSVCDASLRPEREKLMQT   78 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----cCCceEEEeccCCCHHHHHHHHHH
Confidence            4678888887765 4444    44443  6899999998877766555443     234688888887532      111


Q ss_pred             ---c-CCceeEEEECCC
Q psy4592         127 ---H-QQEFDVIITDSS  139 (197)
Q Consensus       127 ---~-~~~~D~I~~~~~  139 (197)
                         . .++.|+++.+.-
T Consensus        79 ~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          79 VSSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHHTTCCSEEEEECC
T ss_pred             HHHHhCCCccccccccc
Confidence               1 367999999864

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.66  Score=33.69  Aligned_cols=109  Identities=15%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CCeEEEEeCCchHhHHHHhcC---CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---------h
Q psy4592          58 PKKVLIVGGGDGGVAREVLKH---PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---------S  125 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~---~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~  125 (197)
                      +++|..|-.|+++++.++++.   .+..+|+.++.+++-++.+.+.+..     ...++.++.+|..+.-         .
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-----EGLSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH-----TTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEEecCCHHHHHHHHHHHH
Confidence            467865655555666665542   1236899999999888777666543     2356788888876421         1


Q ss_pred             hcCCceeEEEECCCCCCC-CCcccccH--------------HHHHHHHhhcCCCcEEEEEc
Q psy4592         126 EHQQEFDVIITDSSDPVG-PAESLFQA--------------SYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~~~-~~~~l~~~--------------~~~~~~~~~LkpgG~l~~~~  171 (197)
                      ...++.|++|.|.-.... +......+              .+.+.+...|+++|.++..+
T Consensus        77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            123689999998643221 11111001              23455668889999877653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.048  Score=36.66  Aligned_cols=96  Identities=8%  Similarity=-0.030  Sum_probs=54.0

Q ss_pred             CeEEEEeCCc-hH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD-GG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++|+.||+|. |. ++..|.+.+  ..|+.++.+++..+........     ..........+..+..    +.+|+|+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~D~iii   69 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETD-----GSIFNESLTANDPDFL----ATSDLLLV   69 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTT-----SCEEEEEEEESCHHHH----HTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHHhhhhccccCC-----ccccccccccchhhhh----cccceEEE
Confidence            4799999986 33 333344443  6899998877533221111110     1111122223323322    35899998


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG  172 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~  172 (197)
                      ....+     .  .++.++.+...++++..++...+
T Consensus        70 ~vka~-----~--~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          70 TLKAW-----Q--VSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             CSCGG-----G--HHHHHHHHHTTSCTTSCEEEECS
T ss_pred             eeccc-----c--hHHHHHhhccccCcccEEeeccC
Confidence            76421     1  37788999999999887776543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=1.8  Score=30.75  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=46.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--h---hcCC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--S---EHQQ  129 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---~~~~  129 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++...+..         +++..+..|+.+.-  .   ..-+
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~g   73 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---------PGIEPVCVDLGDWDATEKALGGIG   73 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHHcC
Confidence            5678998898765 44444332  12279999999987766655543         24566777765321  1   1246


Q ss_pred             ceeEEEECCC
Q psy4592         130 EFDVIITDSS  139 (197)
Q Consensus       130 ~~D~I~~~~~  139 (197)
                      +.|++|.+.-
T Consensus        74 ~iDilVnnAg   83 (242)
T d1cyda_          74 PVDLLVNNAA   83 (242)
T ss_dssp             CCSEEEECCC
T ss_pred             CCeEEEECCc
Confidence            8999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.94  E-value=0.92  Score=32.55  Aligned_cols=76  Identities=12%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh-
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS-  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~-  125 (197)
                      +++.+|..|++.| ++.+    +++.+  .+|..++.+++-++.+.+.+...    ...++..+.+|+.+.      +. 
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~----~g~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAG--CSVVVASRNLEEASEAAQKLTEK----YGVETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH----HCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHH----hCCcEEEEEccCCCHHHHHHHHHH
Confidence            4578888888765 4444    44443  78999999987665544433210    124677788886532      11 


Q ss_pred             --hcCCceeEEEECCC
Q psy4592         126 --EHQQEFDVIITDSS  139 (197)
Q Consensus       126 --~~~~~~D~I~~~~~  139 (197)
                        ..-++.|++|.+.-
T Consensus        77 ~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence              11357999998864

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=90.93  E-value=1.3  Score=32.81  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee-
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD-  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D-  132 (197)
                      .....|+.+|||.=.-...+ ...+..+++=||. |++++.-++.++..+ .....+..++..|..+.+..  ....|| 
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~-~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~  164 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHG-VTPTADRREVPIDLRQDWPPALRSAGFDP  164 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTT-CCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcC-CCCCceEEEecccccchHHHHHHhcCCCC
Confidence            34567888999986554443 2233344444443 788776555543211 11224567777776642221  111233 


Q ss_pred             ----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 ----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                          ++++-...++.+...  ...+++.+.+...||+.+++....
T Consensus       165 ~~ptl~i~EGvl~YL~~~~--~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         165 SARTAWLAEGLLMYLPATA--QDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             TSCEEEEECSCGGGSCHHH--HHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCEEEEEccccccCCHHH--HHHHHHHHHHhCCCCCEEEEEecc
Confidence                455555444443322  267899999999999999986533

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=0.14  Score=35.25  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592          57 NPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~  133 (197)
                      .+.+||..|..  .|..+..+++..+ .+++++--+++..+.+++.-.         . .++.-+-.++... ....+|.
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~~k~~~~~~lGa---------d-~vi~~~~~~~~~~l~~~~~~~   99 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRESTHEYLKSLGA---------S-RVLPRDEFAESRPLEKQVWAG   99 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTE---------E-EEEEGGGSSSCCSSCCCCEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcC-CCeEEEecchhHHHHHHhhcc---------c-cccccccHHHHHHHHhhcCCe
Confidence            34588887753  3456667777765 788899989988888876421         1 1121111111111 2346788


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA  171 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~  171 (197)
                      |+-..           -...+....+.|+++|.++...
T Consensus       100 vvD~V-----------gg~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         100 AIDTV-----------GDKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEESS-----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             eEEEc-----------chHHHHHHHHHhccccceEeec
Confidence            76322           1557889999999999999874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.77  E-value=0.83  Score=33.24  Aligned_cols=78  Identities=17%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~  126 (197)
                      +++.+|.-|++.| ++.+++    +.+  .+|..++.+++-++.+.+.+...  +....++..+.+|+.+.-      ..
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~~~~Dv~~~~~v~~~~~~   77 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEG--AQVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTEASGQDDIINT   77 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEEeeCCCHHHHHHHHHH
Confidence            4578888887765 444443    443  78999999988877666554321  112346888888865321      11


Q ss_pred             ---cCCceeEEEECCC
Q psy4592         127 ---HQQEFDVIITDSS  139 (197)
Q Consensus       127 ---~~~~~D~I~~~~~  139 (197)
                         .-++.|+++.+.-
T Consensus        78 ~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          78 TLAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCceEEEeecc
Confidence               1357899998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=1.8  Score=30.76  Aligned_cols=74  Identities=12%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|.-|++.| ++.++++.  ..+.+|..++.+++-++...+.+.        .+...+.+|+.+.-      .   
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG--------ANGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--------CCCcEEEEEecCHHHhhhhhhhhh
Confidence            4567777787665 45544432  122789999999988776666543        25667777765321      1   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|+++.+..
T Consensus        74 ~~~g~iDilVnnAg   87 (243)
T d1q7ba_          74 AEFGEVDILVNNAG   87 (243)
T ss_dssp             HHTCSCSEEEECCC
T ss_pred             cccCCcceehhhhh
Confidence            12468999998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.063  Score=35.83  Aligned_cols=51  Identities=25%  Similarity=0.473  Sum_probs=34.8

Q ss_pred             HhhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhh
Q psy4592          48 AFLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKY  100 (197)
Q Consensus        48 ~~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~  100 (197)
                      ..+++...-++++||.+|+|.-+....  +++.+  ++++.|  |+++++...+.+.
T Consensus         3 ~~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~~~~~~   57 (150)
T d1kyqa1           3 KSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDLHKSIIPKFGKF   57 (150)
T ss_dssp             CCEEEEECCTTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEECTTHHHHHCGG
T ss_pred             ccchhheeeCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHhc
Confidence            345555556788999999998665544  33333  566666  7788888877654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.23  E-value=1.4  Score=32.10  Aligned_cols=77  Identities=12%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--------  124 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--------  124 (197)
                      +++.+|..|++.| ++.+++    +.+  .+|+.++.+++-++.+.+.+...    ...++.++.+|..+.-        
T Consensus        24 ~gK~alITGas~G-IG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~~l~~~----~g~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          24 QGKVAFITGGGTG-LGKGMTTLLSSLG--AQCVIASRKMDVLKATAEQISSQ----TGNKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH----HSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHh----cCCceEEEEecccChHHHHHHhhh
Confidence            4578888888665 444444    443  79999999987665444433210    1246777777765321        


Q ss_pred             -hhcCCceeEEEECCCC
Q psy4592         125 -SEHQQEFDVIITDSSD  140 (197)
Q Consensus       125 -~~~~~~~D~I~~~~~~  140 (197)
                       ....+..|+++.+.-.
T Consensus        97 ~~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          97 LIKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHHTCSCSEEEECCCC
T ss_pred             hhhhccccchhhhhhhh
Confidence             1225689999987643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=2.3  Score=30.35  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~---  125 (197)
                      +++.+|..|++.| ++.++++.  ....+|..++.+++.++...+..         ++..++.+|+.+.      ..   
T Consensus         5 ~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~~~   74 (250)
T d1ydea1           5 AGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSETI   74 (250)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHHHH
Confidence            5678999998765 44444432  12278999999998887776654         2467778886532      11   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|++|.+.-
T Consensus        75 ~~~g~iDilVnnAG   88 (250)
T d1ydea1          75 RRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEeccc
Confidence            11357899998874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=90.09  E-value=0.99  Score=32.47  Aligned_cols=78  Identities=8%  Similarity=0.035  Sum_probs=46.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhc-CCCCCCCCCCCeEEEEcchHHHH------h--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYL-PGMAVGLSDPRLTVHVGDGFRFM------S--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~d~~~~~------~--  125 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++.+.+.+ ..     ...++..+.+|+.+.-      .  
T Consensus         8 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           8 VNKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE-----FGVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             TTEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH-----HTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-----hCCceEEEEccCCCHHHHHHHHHHH
Confidence            5678888887665 55444432  12278999999876554333322 11     1246778888875321      1  


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ..-++.|++|.+...
T Consensus        82 ~~~~g~iDilVnnAg~   97 (260)
T d1h5qa_          82 DADLGPISGLIANAGV   97 (260)
T ss_dssp             HHHSCSEEEEEECCCC
T ss_pred             HHHhCCCcEecccccc
Confidence             124689999988643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.05  E-value=1.4  Score=27.88  Aligned_cols=94  Identities=13%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             CeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--HHhh-cCCcee
Q psy4592          59 KKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--FMSE-HQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~~~D  132 (197)
                      ++++.+|+|.  ++..+++   ..+ ..++++|.|++.++.++..           ....+.+|+.+  .+.. .-...|
T Consensus         1 k~~iIiG~G~--~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~a~i~~a~   66 (134)
T d2hmva1           1 KQFAVIGLGR--FGGSIVKELHRMG-HEVLAVDINEEKVNAYASY-----------ATHAVIANATEENELLSLGIRNFE   66 (134)
T ss_dssp             CCEEEECCSH--HHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTT-----------CSEEEECCTTCTTHHHHHTGGGCS
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHh-----------CCcceeeecccchhhhccCCcccc
Confidence            3677888764  3433332   223 6899999999998877542           23456677653  2222 234688


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .+++..+....       ...+-.+.+.+.+...++..+.+
T Consensus        67 ~vi~~~~~~~~-------~~~~~~~~~~~~~~~~iiar~~~  100 (134)
T d2hmva1          67 YVIVAIGANIQ-------ASTLTTLLLKELDIPNIWVKAQN  100 (134)
T ss_dssp             EEEECCCSCHH-------HHHHHHHHHHHTTCSEEEEECCS
T ss_pred             EEEEEcCchHH-------hHHHHHHHHHHcCCCcEEeeccc
Confidence            88876642111       22334444555677777765433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.03  E-value=0.99  Score=32.43  Aligned_cols=108  Identities=17%  Similarity=0.096  Sum_probs=60.0

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEE-EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLV-EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~v-e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~--  125 (197)
                      .++.||..|++.| ++.++++..  .+.+|+.. ..+++..+.+.+.+..     .+.++.++.+|+.+.      +.  
T Consensus         5 ~GK~alITGas~G-IG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~D~~~~~~v~~~~~~~   78 (259)
T d1ja9a_           5 AGKVALTTGAGRG-IGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK-----LGAQGVAIQADISKPSEVVALFDKA   78 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH-----cCCCceEecCCCCCHHHHHHHHHHH
Confidence            4578888886554 555444321  12566654 4566666666665543     234788888887632      11  


Q ss_pred             -hcCCceeEEEECCCCCCCCCcccccH---------------HHHHHHHhhcCCCcEEEEE
Q psy4592         126 -EHQQEFDVIITDSSDPVGPAESLFQA---------------SYFELMSRALRPGGIVCSQ  170 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~~~~~~~~l~~~---------------~~~~~~~~~LkpgG~l~~~  170 (197)
                       ...+..|+++.+.-.....+....+.               .+.+.+...|+.+|..++.
T Consensus        79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence             12357999998875433221111111               1345555677777766554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=1.4  Score=31.58  Aligned_cols=77  Identities=13%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|+.++.+++-++.+.+.+..     ...++.++.+|+.+.-      .   
T Consensus        10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~-----~g~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-----LGGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            5668887777654 55544432  1237899999998887766665543     2346788888876421      1   


Q ss_pred             hcCCceeEEEECCC
Q psy4592         126 EHQQEFDVIITDSS  139 (197)
Q Consensus       126 ~~~~~~D~I~~~~~  139 (197)
                      ..-++.|+++.+.-
T Consensus        84 ~~~g~iDilvnnAG   97 (255)
T d1fmca_          84 SKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHSSCCEEEECCC
T ss_pred             HHcCCCCEeeeCCc
Confidence            11357999998764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.89  E-value=1.3  Score=31.80  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S---  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~---  125 (197)
                      +++.+|..|++.| ++.++++.  ....+|..++.+++.++...+.+.        .+..++.+|+.+.-      .   
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~   75 (253)
T d1hxha_           5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--------ERSMFVRHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--------TTEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------CCeEEEEeecCCHHHHHHHHHHHH
Confidence            4568888887665 54444432  122789999999988776665543        24566666655321      1   


Q ss_pred             hcCCceeEEEECCCC
Q psy4592         126 EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~  140 (197)
                      ..-++.|+++.+.-.
T Consensus        76 ~~~g~iDilVnnAG~   90 (253)
T d1hxha_          76 RRLGTLNVLVNNAGI   90 (253)
T ss_dssp             HHHCSCCEEEECCCC
T ss_pred             HHhCCCCeEEecccc
Confidence            113578999998743

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.62  E-value=2.4  Score=29.97  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+          +.+.+.+|+.+.      +..  
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~Dv~~~~~v~~~~~~~~   72 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV----------GAHPVVMDVADPASVERGFAEAL   72 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------TCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----------CCeEEEEecCCHHHHHHHHHHHH
Confidence            4568888888776 54444432  11278999999998877665533          345666776532      111  


Q ss_pred             -cCCceeEEEECCC
Q psy4592         127 -HQQEFDVIITDSS  139 (197)
Q Consensus       127 -~~~~~D~I~~~~~  139 (197)
                       .-++.|++|.+.-
T Consensus        73 ~~~g~iDilVnnAG   86 (242)
T d1ulsa_          73 AHLGRLDGVVHYAG   86 (242)
T ss_dssp             HHHSSCCEEEECCC
T ss_pred             HhcCCceEEEECCc
Confidence             1357999998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.08  E-value=0.73  Score=30.52  Aligned_cols=42  Identities=12%  Similarity=0.022  Sum_probs=28.2

Q ss_pred             CCeEEEEeCCc-hH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhc
Q psy4592          58 PKKVLIVGGGD-GG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYL  101 (197)
Q Consensus        58 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~  101 (197)
                      .++||.||+|- |. ++..|.+. + ..|+.+|.+.+-.+...+.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~-g-~~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS-G-IKVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEECChHHHHHHHhcc
Confidence            46899999863 32 22333334 3 58999999998777666654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=2.1  Score=30.54  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------  125 (197)
                      +++.+|.-|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+...   ....++.++.+|+.+.-.         
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            4678888888765 45544432  12278999999988777665554321   123468888888764311         


Q ss_pred             hcCCceeEEEECCCCC
Q psy4592         126 EHQQEFDVIITDSSDP  141 (197)
Q Consensus       126 ~~~~~~D~I~~~~~~~  141 (197)
                      ..-++.|++|.+....
T Consensus        78 ~~~G~iDilVnnAg~~   93 (254)
T d2gdza1          78 DHFGRLDILVNNAGVN   93 (254)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCcCeeccccccc
Confidence            1135799999887543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=88.70  E-value=2.4  Score=29.95  Aligned_cols=108  Identities=16%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------h--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------E--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~--  126 (197)
                      .++.+|..|++.| ++.++++.  ..+.+|+.++.+.+.++...+.+        ..++.++.+|+.+.-.      .  
T Consensus         4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dls~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAAL--------EAEAIAVVADVSDPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--------CCceEEEEecCCCHHHHHHHHHHHH
Confidence            4678888888765 44444432  12279999999988776555543        2367778888653211      1  


Q ss_pred             -cCCceeEEEECCCCCCCCC-cccccH--------------HHHHHHHhhcCCCcEEEEEcCC
Q psy4592         127 -HQQEFDVIITDSSDPVGPA-ESLFQA--------------SYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       127 -~~~~~D~I~~~~~~~~~~~-~~l~~~--------------~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                       .-++.|+++.+........ .....+              .+.+.+...++.++.+++.+..
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence             1257999999764322211 111111              1344556778888876665533

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.85  Score=29.88  Aligned_cols=98  Identities=8%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHH-HHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCcee
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIE-VSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFD  132 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D  132 (197)
                      .+|+.+|+|.-+  +...+.+. + ..++.||.+++... .+.+..        ...+.++.||+.+.  +.. .-++.|
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~-~-~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a~   73 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR-G-QNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-C-CCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccCC
Confidence            378898887432  22223333 2 68999999986543 333322        23688899987653  222 356789


Q ss_pred             EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      .|++....    +.   .--..-...+-+.|+-.++..+..
T Consensus        74 ~vi~~~~~----d~---~n~~~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          74 AILALSDN----DA---DNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEEECSSC----HH---HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EEEEcccc----HH---HHHHHHHHHHHhCCCCceEEEEcC
Confidence            99876531    11   012333445667888888876654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.41  E-value=0.76  Score=30.45  Aligned_cols=119  Identities=14%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             CeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+|-.||+|.  +.++..+... +..++..+|++++..+--..-+.... .+...+..+...+-.+.+    ...|+|+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~-~l~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~v~~~~~~~~~----~~advvvi   77 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVKNMPHGKALDTSHTN-VMAYSNCKVSGSNTYDDL----AGADVVIV   77 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHTHH-HHHTCCCCEEEECCGGGG----TTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCCeEEEEeccCCcceeeecchhhhc-cccCCCcEEEeccccccc----CCCcEEEE
Confidence            5899999874  2233323333 44689999998876542221111100 001123444433322212    34788888


Q ss_pred             CCCCCCCC--------Ccccc--cHHHHHHHHhhc---CCCcEEEEEcCCCCcChhHHHHHHHH
Q psy4592         137 DSSDPVGP--------AESLF--QASYFELMSRAL---RPGGIVCSQAGTLWYSLDCVGNTLQH  187 (197)
Q Consensus       137 ~~~~~~~~--------~~~l~--~~~~~~~~~~~L---kpgG~l~~~~~~~~~~~~~~~~~~~~  187 (197)
                      ..-.+..+        ...+.  +...++.+...+   .|++++++.++.    .+.+..++..
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP----vD~~t~~~~~  137 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP----VDVMVQLLHQ  137 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS----HHHHHHHHHH
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc----hHHHHHHHHH
Confidence            65433221        11111  123333333323   599988886544    4555555433

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.32  E-value=2.5  Score=30.23  Aligned_cols=78  Identities=24%  Similarity=0.291  Sum_probs=48.6

Q ss_pred             CCCeEEEEeCCchH---hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h--
Q psy4592          57 NPKKVLIVGGGDGG---VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--  125 (197)
                      +++.+|..|++.|.   ++..+++.+  .+|..++.+++-++.+.+.+....   .+.++..+.+|+.+.-      .  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            45688888887662   333344443  799999999988776655432210   2346777888865321      1  


Q ss_pred             -hcCCceeEEEECCC
Q psy4592         126 -EHQQEFDVIITDSS  139 (197)
Q Consensus       126 -~~~~~~D~I~~~~~  139 (197)
                       ..-++.|++|.|.-
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence             11357999998864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.27  E-value=0.97  Score=30.66  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCceeE
Q psy4592          59 KKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D~  133 (197)
                      ++|..||+|..+.+.+  +++.+  .+|+..  +.+++.++...+.-..+..........+. ..|..+.+    ...|+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~ad~   74 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL----ENAEV   74 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH----TTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH----hccch
Confidence            3688999997765544  33332  466655  45676666655432211101011122222 23333322    45799


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      |+...+.     ..  .++.++++...++++-.+++
T Consensus        75 Ii~avps-----~~--~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          75 VLLGVST-----DG--VLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EEECSCG-----GG--HHHHHHHHTTTCCSCEEEEC
T ss_pred             hhcccch-----hh--hHHHHHhhccccccceeccc
Confidence            9987652     11  26788888888877644443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=1.8  Score=31.12  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--------
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--------  124 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--------  124 (197)
                      +++++|..|++.| ++.+    +++.+  .+|..++.+++-++.+.+.....    ..........|..+..        
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~   85 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMG--AHVVVTARSKETLQKVVSHCLEL----GAASAHYIAGTMEDMTFAEQFVAQ   85 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH----TCSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHhhh----hcccchhhhhhhhhHHHHHHHHHH
Confidence            4578999998876 4444    44443  79999999998887665543211    2235666666644211        


Q ss_pred             -hhcCCceeEEEECCC
Q psy4592         125 -SEHQQEFDVIITDSS  139 (197)
Q Consensus       125 -~~~~~~~D~I~~~~~  139 (197)
                       ....+..|+++.+..
T Consensus        86 ~~~~~g~~~~li~nag  101 (269)
T d1xu9a_          86 AGKLMGGLDMLILNHI  101 (269)
T ss_dssp             HHHHHTSCSEEEECCC
T ss_pred             HHHHhCCccccccccc
Confidence             112357888888754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.35  E-value=0.84  Score=33.13  Aligned_cols=80  Identities=16%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+...  +....++..+.+|+.+.      +..  
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~--~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            4568888887665 44444432  12279999999998887776655431  11234688888886532      111  


Q ss_pred             -cCCceeEEEECCC
Q psy4592         127 -HQQEFDVIITDSS  139 (197)
Q Consensus       127 -~~~~~D~I~~~~~  139 (197)
                       .-++.|+++.+.-
T Consensus        81 ~~~g~iDilvnnAG   94 (272)
T d1xkqa_          81 KQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCceEEEeCCc
Confidence             1357899998853

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.38  Score=34.60  Aligned_cols=73  Identities=14%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH--H---HhhcCC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR--F---MSEHQQ  129 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~  129 (197)
                      +++.+|..|++.| ++.++++..  .+.+|..++.+++-++...+.          ..++....|...  .   ......
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~   73 (245)
T d2ag5a1           5 DGKVIILTAAAQG-IGQAAALAFAREGAKVIATDINESKLQELEKY----------PGIQTRVLDVTKKKQIDQFANEVE   73 (245)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS----------TTEEEEECCTTCHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----------cCCceeeeeccccccccccccccc
Confidence            5678888887655 544444321  127999999998765443332          235555555432  1   112246


Q ss_pred             ceeEEEECCCC
Q psy4592         130 EFDVIITDSSD  140 (197)
Q Consensus       130 ~~D~I~~~~~~  140 (197)
                      ..|.+|.+...
T Consensus        74 ~id~lVn~ag~   84 (245)
T d2ag5a1          74 RLDVLFNVAGF   84 (245)
T ss_dssp             CCSEEEECCCC
T ss_pred             cceeEEecccc
Confidence            78999887654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.96  E-value=2.7  Score=29.73  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             EEEEeCCchHhHHHHhc----CCC-----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h
Q psy4592          61 VLIVGGGDGGVAREVLK----HPS-----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S  125 (197)
Q Consensus        61 vLdiG~G~G~~~~~l~~----~~~-----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~  125 (197)
                      ||.-|++.| ++.++++    .+-     ...+..++.+++-++...+.+..     ...+..++.+|+.+.-      .
T Consensus         4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~-----~g~~~~~~~~Dvt~~~~v~~~~~   77 (240)
T d2bd0a1           4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-----EGALTDTITADISDMADVRRLTT   77 (240)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHHH
T ss_pred             EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHH
Confidence            556676665 5555443    221     12388899998887766665543     2356778888876421      1


Q ss_pred             ---hcCCceeEEEECCCC
Q psy4592         126 ---EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 ---~~~~~~D~I~~~~~~  140 (197)
                         ..-+..|+++.+.-.
T Consensus        78 ~~~~~~g~iDilvnnAg~   95 (240)
T d2bd0a1          78 HIVERYGHIDCLVNNAGV   95 (240)
T ss_dssp             HHHHHTSCCSEEEECCCC
T ss_pred             HHHHHcCCcceeeccccc
Confidence               124689999987643

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.93  E-value=1.5  Score=29.38  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CeEEEEeCCchHhH---HHHhcC---CCCccEEEEEcCHHH
Q psy4592          59 KKVLIVGGGDGGVA---REVLKH---PSVESAYLVEIDNRV   93 (197)
Q Consensus        59 ~~vLdiG~G~G~~~---~~l~~~---~~~~~v~~ve~~~~~   93 (197)
                      .+|..||+|+.+++   ..++..   .+..+++.+|++++.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~   42 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK   42 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence            36889999865432   223332   223589999998864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.84  E-value=2.3  Score=30.51  Aligned_cols=78  Identities=13%  Similarity=0.097  Sum_probs=45.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCH-HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDN-RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--  125 (197)
                      +++.+|..|++.| ++.++++.  ....+|..++.+. +.++...+.+..     ...++..+.+|+.+.-      .  
T Consensus         6 ~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~-----~g~~~~~~~~Dvt~~~~v~~~~~~~   79 (261)
T d1geea_           6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-----VGGEAIAVKGDVTVESDVINLVQSA   79 (261)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            4567888787765 45444432  1126888889764 445544444332     2346778888876321      1  


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ..-++.|++|.+.-.
T Consensus        80 ~~~~G~iDiLVnnAG~   95 (261)
T d1geea_          80 IKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCCEeecccee
Confidence             113578999988643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.59  E-value=3.2  Score=29.04  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---HhhcCCce
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF---MSEHQQEF  131 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~  131 (197)
                      +++++|..|++.| ++.++++.  ....+|..++.+++.++...              .++..+|..+.   +...-++.
T Consensus         3 kgK~~lVTGas~G-IG~aia~~l~~~Ga~V~~~~r~~~~l~~~~--------------~~~~~~Dv~~~~~~~~~~~g~i   67 (234)
T d1o5ia_           3 RDKGVLVLAASRG-IGRAVADVLSQEGAEVTICARNEELLKRSG--------------HRYVVCDLRKDLDLLFEKVKEV   67 (234)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHTC--------------SEEEECCTTTCHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHhcC--------------CcEEEcchHHHHHHHHHHhCCC
Confidence            4578999998765 55544432  11278999999987654321              12344554332   22335689


Q ss_pred             eEEEECCCC
Q psy4592         132 DVIITDSSD  140 (197)
Q Consensus       132 D~I~~~~~~  140 (197)
                      |+++.+.-.
T Consensus        68 D~lVnnAG~   76 (234)
T d1o5ia_          68 DILVLNAGG   76 (234)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEecccc
Confidence            999988643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.30  E-value=1.3  Score=30.16  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=44.9

Q ss_pred             CCCeEEEEeCCchH---hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGG---VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++||..|++.|.   ++..+++.+  .+++.++.+++-++...+.+....   ..........|..+ +...-+..|+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~~iDi   95 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDAS-RAEAVKGAHF   95 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHH-HHHHTTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHH-HHHHhcCcCe
Confidence            56799999976552   333344443  689999999887766655543210   11122333344333 3333567899


Q ss_pred             EEECCC
Q psy4592         134 IITDSS  139 (197)
Q Consensus       134 I~~~~~  139 (197)
                      ++.+..
T Consensus        96 lin~Ag  101 (191)
T d1luaa1          96 VFTAGA  101 (191)
T ss_dssp             EEECCC
T ss_pred             eeecCc
Confidence            998764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.23  E-value=3.3  Score=27.60  Aligned_cols=74  Identities=18%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CCCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          56 PNPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .++++||.+|+|.-+-+  ..+.+ .. .+++.+.-+++-.+...+.+...      .++.....|     ......+|+
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~-~~i~I~nR~~~~a~~l~~~~~~~------~~~~~~~~~-----~~~~~~~di   82 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQ-QNIVLANRTFSKTKELAERFQPY------GNIQAVSMD-----SIPLQTYDL   82 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TT-CEEEEEESSHHHHHHHHHHHGGG------SCEEEEEGG-----GCCCSCCSE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cC-ceeeeccchHHHHHHHHHHHhhc------cccchhhhc-----cccccccce
Confidence            46679999999754322  22333 33 68999999887766665555421      234443333     112467999


Q ss_pred             EEECCCCCC
Q psy4592         134 IITDSSDPV  142 (197)
Q Consensus       134 I~~~~~~~~  142 (197)
                      |+...+...
T Consensus        83 iIN~tp~g~   91 (171)
T d1p77a1          83 VINATSAGL   91 (171)
T ss_dssp             EEECCCC--
T ss_pred             eeecccccc
Confidence            998876543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.96  E-value=4.3  Score=28.71  Aligned_cols=69  Identities=20%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             CCCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh
Q psy4592          57 NPKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~  126 (197)
                      +++.+|..|++.| ++.+++    +.+  .+|..++.+++..+.+++.           +..++..|+.+.      +..
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~   69 (248)
T d2d1ya1           4 AGKGVLVTGGARG-IGRAIAQAFAREG--ALVALCDLRPEGKEVAEAI-----------GGAFFQVDLEDERERVRFVEE   69 (248)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESSTTHHHHHHHH-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc-----------CCeEEEEeCCCHHHHHHHHHH
Confidence            5678888887665 544444    343  7899999998877766542           124556666532      111


Q ss_pred             ---cCCceeEEEECCC
Q psy4592         127 ---HQQEFDVIITDSS  139 (197)
Q Consensus       127 ---~~~~~D~I~~~~~  139 (197)
                         .-++.|++|.|.-
T Consensus        70 ~~~~~G~iDiLVnnAG   85 (248)
T d2d1ya1          70 AAYALGRVDVLVNNAA   85 (248)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHhcCCCCeEEEeCc
Confidence               1357999998764

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.93  E-value=2.5  Score=26.39  Aligned_cols=68  Identities=21%  Similarity=0.154  Sum_probs=45.3

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhh
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      .+|..||-++...+..+..+...     +-.+. ...++.+.+.. ...+||+|++|...+....     -++++.+++.
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~-----g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~g-----~~~~~~lr~~   70 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKE-----MFTVD-VCYDGEEGMYMALNEPFDVVILDIMLPVHDG-----WEILKSMRES   70 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHT-----TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCH-----HHHHHHHHHT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHC-----CCEEE-EEcchHHHHHHHHhhCccccccccccccchh-----HHHHHHHHhc
Confidence            47889999999999888887642     12333 45677665543 3478999999986554422     3566666543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.85  E-value=3.7  Score=27.78  Aligned_cols=100  Identities=14%  Similarity=0.043  Sum_probs=56.0

Q ss_pred             CCCeEEEEeCCchHhHH-HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVAR-EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .++++..+|+|..+-.. .+++..+ .++.+.|....-......            .++  ..+..+.+..    .|+|+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg-~~v~~~d~~~~~~~~~~~------------~~~--~~~l~ell~~----sDiv~  103 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFG-AYVVAYDPYVSPARAAQL------------GIE--LLSLDDLLAR----ADFIS  103 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT-CEEEEECTTSCHHHHHHH------------TCE--ECCHHHHHHH----CSEEE
T ss_pred             cceeeeeccccchhHHHHHHhhhcc-ceEEeecCCCChhHHhhc------------Cce--eccHHHHHhh----CCEEE
Confidence            45799999998765432 2444554 688888865433222211            112  2355566654    79999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-CCcChhHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-LWYSLDCV  181 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-~~~~~~~~  181 (197)
                      ...|...... ++.+.    +..+.||+|.+|+ |+.. ...+.+.+
T Consensus       104 ~~~Plt~~T~-~lin~----~~l~~mk~~a~lI-N~sRG~iVde~aL  144 (184)
T d1ygya1         104 VHLPKTPETA-GLIDK----EALAKTKPGVIIV-NAARGGLVDEAAL  144 (184)
T ss_dssp             ECCCCSTTTT-TCBCH----HHHTTSCTTEEEE-ECSCTTSBCHHHH
T ss_pred             EcCCCCchhh-hhhhH----HHHhhhCCCceEE-EecchhhhhhHHH
Confidence            9887544322 34444    4445788876655 5433 33343333

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.70  E-value=3.2  Score=29.42  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHH-HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--------
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRV-IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--------  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------  125 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.++.- .+...+.        ...++.++.+|+.+.-.        
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--------~g~~~~~~~~Dvs~~~~v~~~~~~~   74 (247)
T d2ew8a1           4 KDKLAVITGGANG-IGRAIAERFAVEGADIAIADLVPAPEAEAAIRN--------LGRRVLTVKCDVSQPGDVEAFGKQV   74 (247)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH--------TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH--------cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence            4568888887665 54444432  122689899987632 2222222        12467888888763211        


Q ss_pred             -hcCCceeEEEECCCC
Q psy4592         126 -EHQQEFDVIITDSSD  140 (197)
Q Consensus       126 -~~~~~~D~I~~~~~~  140 (197)
                       ..-++.|++|.|.-.
T Consensus        75 ~~~~G~iDilVnnAG~   90 (247)
T d2ew8a1          75 ISTFGRCDILVNNAGI   90 (247)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence             113579999988643

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.43  E-value=2.3  Score=26.60  Aligned_cols=76  Identities=12%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE--EEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHH
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV--HVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMS  158 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~  158 (197)
                      .+|..||=++...+..++.+...      ...+.  ...|+.+.+.. ...++|+|++|...|....     -+++++++
T Consensus         2 irILivDD~~~~~~~l~~~L~~~------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG-----~e~~~~ir   70 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQ------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDG-----LAVLERIR   70 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCH-----HHHHHHHH
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCH-----HHHHHHHH
Confidence            36788999999999998887542      23443  34576665553 2357999999986654322     46778887


Q ss_pred             hhcCCCcEEE
Q psy4592         159 RALRPGGIVC  168 (197)
Q Consensus       159 ~~LkpgG~l~  168 (197)
                      +.....-.++
T Consensus        71 ~~~~~~~~ii   80 (123)
T d1dz3a_          71 AGFEHQPNVI   80 (123)
T ss_dssp             HHCSSCCEEE
T ss_pred             hcCCCCCeEE
Confidence            6655443333

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=85.34  E-value=1.5  Score=27.36  Aligned_cols=78  Identities=9%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhh
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      .+|..||-++.+.+..+..+..+     +-.+.....|+.+.+.. ...+||+|++|...+....     -++++++++.
T Consensus         2 krILivDD~~~~~~~l~~~L~~~-----g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G-----~e~~~~ir~~   71 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKA-----GYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNG-----IDAIKEIMKI   71 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCH-----HHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHc-----CCceEEEECCHHHHHHHHHhccCCEEEEecCCCCCCH-----HHHHHHHHHh
Confidence            57889999999999888887652     11232244677766553 2357999999986544321     4677777654


Q ss_pred             cCCCcEEEEE
Q psy4592         161 LRPGGIVCSQ  170 (197)
Q Consensus       161 LkpgG~l~~~  170 (197)
                       .|+-.+++.
T Consensus        72 -~~~~pvi~l   80 (118)
T d1u0sy_          72 -DPNAKIIVC   80 (118)
T ss_dssp             -CTTCCEEEE
T ss_pred             -CCCCcEEEE
Confidence             455444443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.98  E-value=3.2  Score=28.10  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592          59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY  100 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~  100 (197)
                      ++|..+|.|-=++..++.... ..+|+++|++++.++..++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~-g~~V~g~Din~~~v~~l~~g   41 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG   41 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT
T ss_pred             CEEEEECCChhHHHHHHHHHC-CCcEEEEECCHHHHHHHhhc
Confidence            367888877444444433333 36999999999999887764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.91  E-value=4.3  Score=27.73  Aligned_cols=104  Identities=11%  Similarity=0.014  Sum_probs=55.3

Q ss_pred             CCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      .+++|..+|+|.=+ ....+++..+ .++.+.|.....-......            +. ...+..+.+..    .|+|+
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg-~~v~~~d~~~~~~~~~~~~------------~~-~~~~l~~ll~~----sD~i~  109 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFG-FNVLFYDPYLSDGVERALG------------LQ-RVSTLQDLLFH----SDCVT  109 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT-CEEEEECTTSCTTHHHHHT------------CE-ECSSHHHHHHH----CSEEE
T ss_pred             eCceEEEeccccccccceeeeeccc-cceeeccCcccccchhhhc------------cc-cccchhhcccc----CCEEE
Confidence            45799999998522 2222334444 6888888654321111111            11 12355565554    69999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-CCcChhHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-LWYSLDCVGNT  184 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~  184 (197)
                      ...+...... ++...    +..+.||+|.+|+ |+.. ...+.+.+.+.
T Consensus       110 ~~~plt~~T~-~li~~----~~l~~mk~~a~lI-N~sRG~ivde~aL~~a  153 (193)
T d1mx3a1         110 LHCGLNEHNH-HLIND----FTVKQMRQGAFLV-NTARGGLVDEKALAQA  153 (193)
T ss_dssp             ECCCCCTTCT-TSBSH----HHHTTSCTTEEEE-ECSCTTSBCHHHHHHH
T ss_pred             Eeecccccch-hhhhH----HHHhccCCCCeEE-ecCCceEEcHHHHHHH
Confidence            9887544322 34443    3455788886665 4433 33344444333

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.72  E-value=1.8  Score=31.06  Aligned_cols=77  Identities=12%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             CCCeEEEEeCCchHhHHH----HhcCCCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h
Q psy4592          57 NPKKVLIVGGGDGGVARE----VLKHPSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S  125 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~  125 (197)
                      +++.+|..|++.| ++.+    +++.+  .+|..++.+ ++.++.+.+.+...    ...++.++.+|+.+.-      .
T Consensus         3 ~gK~alITGas~G-IG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~~----~g~~~~~~~~Dv~~~~~v~~~~~   75 (260)
T d1x1ta1           3 KGKVAVVTGSTSG-IGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAGLAAQ----HGVKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHHHHHH----HTSCEEEECCCTTSHHHHHHHHH
T ss_pred             CcCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHHh----cCCcEEEEECCCCCHHHHHHHHH
Confidence            4567787777665 4444    44443  689999986 45555544433211    1246778888876421      1


Q ss_pred             h---cCCceeEEEECCCC
Q psy4592         126 E---HQQEFDVIITDSSD  140 (197)
Q Consensus       126 ~---~~~~~D~I~~~~~~  140 (197)
                      .   .-++.|++|.+.-.
T Consensus        76 ~~~~~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          76 NAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHhCCCcEEEeeccc
Confidence            1   13579999988643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=84.34  E-value=0.17  Score=37.12  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=26.5

Q ss_pred             CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCH
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      .+|++|+.||+|.++++.+......+.+|+.+|.++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            567899999999998877643221226899998765

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=84.25  E-value=1.2  Score=33.90  Aligned_cols=112  Identities=12%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             CCCCeEEEEeCCchHhHHHHhc----------------CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--
Q psy4592          56 PNPKKVLIVGGGDGGVAREVLK----------------HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--  117 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~~~l~~----------------~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--  117 (197)
                      ++.-+|.|+||.+|..+..+..                ..+..++..=|+-.+=....-+.++...   +..+--+..  
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gv  126 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGV  126 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEE
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEec
Confidence            3446899999999986632221                1233456666654443333333333211   111112222  


Q ss_pred             -cchHHHHhhcCCceeEEEECCCCCCCCC-------------------c---cccc-------HHHHHHHHhhcCCCcEE
Q psy4592         118 -GDGFRFMSEHQQEFDVIITDSSDPVGPA-------------------E---SLFQ-------ASYFELMSRALRPGGIV  167 (197)
Q Consensus       118 -~d~~~~~~~~~~~~D~I~~~~~~~~~~~-------------------~---~l~~-------~~~~~~~~~~LkpgG~l  167 (197)
                       +....-+ .+.++.|++++....||...                   +   ..+.       ..||+.=.+-|+|||.+
T Consensus       127 pGSFY~rL-fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m  205 (359)
T d1m6ex_         127 PGSFYGRL-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM  205 (359)
T ss_dssp             ESCSSSCC-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred             CCchhhhc-CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence             2222111 13578899999887777310                   0   0111       23666667889999998


Q ss_pred             EEEc
Q psy4592         168 CSQA  171 (197)
Q Consensus       168 ~~~~  171 (197)
                      ++..
T Consensus       206 vl~~  209 (359)
T d1m6ex_         206 VLTI  209 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=84.00  E-value=3  Score=26.87  Aligned_cols=115  Identities=14%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             eEEEEeCCc-hH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCceeEEEE
Q psy4592          60 KVLIVGGGD-GG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        60 ~vLdiG~G~-G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D~I~~  136 (197)
                      +|..+|.|. |. ++..+....-..++..+|++++..+.....+..... ....+.++. ..|..+ +    ...|+|+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~~~~i~~~~~~~~-~----~dadvvvi   75 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLFDTKVTGSNDYAD-T----ANSDIVII   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTCCCEEEEESCGGG-G----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcccceEEecCCHHH-h----cCCeEEEE
Confidence            678888763 21 233333343335899999998766533322111000 012244554 344322 2    34688888


Q ss_pred             CCCCCCCCCc---cccc------HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592         137 DSSDPVGPAE---SLFQ------ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL  185 (197)
Q Consensus       137 ~~~~~~~~~~---~l~~------~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  185 (197)
                      ..-.+..+..   .+..      .+..+.+.+. .|++++++.++.    .+.+..+.
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNP----vd~~~~~~  128 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNP----LDIMTHVA  128 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSS----HHHHHHHH
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCC----hHHHHHHH
Confidence            6543332211   1110      2233344443 599988876543    34444444

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.89  E-value=0.63  Score=34.17  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=42.0

Q ss_pred             eEEEEeCCchHhHHHHhcCC--CCccEEEEE-cCHH-HHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh--cCCce
Q psy4592          60 KVLIVGGGDGGVAREVLKHP--SVESAYLVE-IDNR-VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE--HQQEF  131 (197)
Q Consensus        60 ~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~--~~~~~  131 (197)
                      +||..|+ +|.++..+.+..  .+.+|+++| ++.. ..+.... +.      ..++++++.+|+.+.  +..  ...++
T Consensus         2 KILVTGa-tGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~-~~------~~~~~~~i~~Di~~~~~l~~~~~~~~~   73 (338)
T d1orra_           2 KLLITGG-CGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHW-LS------SLGNFEFVHGDIRNKNDVTRLITKYMP   73 (338)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHH-HH------TTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHH-hh------ccCCcEEEEcccCCHHHHHHHHHhcCC
Confidence            6886665 788776655421  236899998 3322 2222211 11      235789999998643  221  12357


Q ss_pred             eEEEECCCC
Q psy4592         132 DVIITDSSD  140 (197)
Q Consensus       132 D~I~~~~~~  140 (197)
                      |.|+.....
T Consensus        74 d~Vih~aa~   82 (338)
T d1orra_          74 DSCFHLAGQ   82 (338)
T ss_dssp             SEEEECCCC
T ss_pred             ceEEeeccc
Confidence            999987653

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=83.78  E-value=2.6  Score=26.22  Aligned_cols=78  Identities=10%  Similarity=0.088  Sum_probs=50.7

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhh
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      .+|..||=++.+.+..++.+...     +-.+ ....|+.+.+.. ...+||+|++|...+....     -++++++++.
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~-----g~~v-~~a~~g~eal~~~~~~~~dlillD~~mP~~~G-----~el~~~lr~~   70 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKE-----GYQT-FQAANGLQALDIVTKERPDLVLLDMKIPGMDG-----IEILKRMKVI   70 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHT-----TCEE-EEESSHHHHHHHHHHHCCSEEEEESCCTTCCH-----HHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHc-----CCEE-EEeCCHHHHHHHHHhCCCCEEEEeccCCCCCH-----HHHHHHHHHh
Confidence            47889999999998888877642     1122 245666665543 2357999999987655422     4677777655


Q ss_pred             cCCCcEEEEEc
Q psy4592         161 LRPGGIVCSQA  171 (197)
Q Consensus       161 LkpgG~l~~~~  171 (197)
                       .|+--+++.+
T Consensus        71 -~~~~pvi~lt   80 (119)
T d1peya_          71 -DENIRVIIMT   80 (119)
T ss_dssp             -CTTCEEEEEE
T ss_pred             -CCCCcEEEEe
Confidence             4555444443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.73  E-value=1.3  Score=31.95  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE--  126 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~--  126 (197)
                      +++.+|..|++.| ++.++++.  ..+.+|..++.+++-++.+.+.+...  +....++.++.+|+.+.      +..  
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--~~~~~~~~~~~~Dvt~~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAA--GVSEQNVNSVVADVTTDAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence            4567777777655 55544432  12278999999988877666554321  11234688888887532      111  


Q ss_pred             -cCCceeEEEECCC
Q psy4592         127 -HQQEFDVIITDSS  139 (197)
Q Consensus       127 -~~~~~D~I~~~~~  139 (197)
                       .-++.|+++.+.-
T Consensus        81 ~~~g~iDilvnnAG   94 (264)
T d1spxa_          81 GKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCEeecccc
Confidence             1357999998753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.36  E-value=5.1  Score=27.42  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=53.8

Q ss_pred             CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|..+|+|.  ++..++   +..+ .+|.+.|....-.. ....            .  ...+..+.++.    .|+
T Consensus        42 ~gk~vgIiG~G~--IG~~va~~l~~fg-~~V~~~d~~~~~~~-~~~~------------~--~~~~l~~~l~~----sDi   99 (197)
T d1j4aa1          42 RDQVVGVVGTGH--IGQVFMQIMEGFG-AKVITYDIFRNPEL-EKKG------------Y--YVDSLDDLYKQ----ADV   99 (197)
T ss_dssp             GGSEEEEECCSH--HHHHHHHHHHHTT-CEEEEECSSCCHHH-HHTT------------C--BCSCHHHHHHH----CSE
T ss_pred             cCCeEEEecccc--cchhHHHhHhhhc-ccccccCccccccc-ccce------------e--eeccccccccc----ccc
Confidence            357999999985  444443   3444 68999986543211 1111            1  11344555544    799


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-CCcChhHHHHH
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-LWYSLDCVGNT  184 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~  184 (197)
                      |+...|..... .++...+.|    +.||+|.+| +|+.. ...+.+.+.+.
T Consensus       100 i~~~~plt~~T-~~li~~~~l----~~mk~~a~l-IN~sRG~ivde~aL~~a  145 (197)
T d1j4aa1         100 ISLHVPDVPAN-VHMINDESI----AKMKQDVVI-VNVSRGPLVDTDAVIRG  145 (197)
T ss_dssp             EEECSCCCGGG-TTCBSHHHH----HHSCTTEEE-EECSCGGGBCHHHHHHH
T ss_pred             ccccCCccccc-cccccHHHH----hhhCCccEE-EecCchhhhhhHHHHHH
Confidence            99887753332 234445555    466776555 45533 33344444333

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=83.24  E-value=4  Score=26.08  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592          83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL  161 (197)
Q Consensus        83 ~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L  161 (197)
                      +|..||=++.+.+..+..+...     +-.+. ...|+.+.+.. ...++|+|++|...+....     -++++.+++. 
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~-----g~~v~-~~~~~~~al~~l~~~~~dlil~D~~mP~~~G-----~el~~~lr~~-   69 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELA-----GFTVS-SFASATEALAGLSADFAGIVISDIRMPGMDG-----LALFRKILAL-   69 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHT-----TCEEE-EESCHHHHHHTCCTTCCSEEEEESCCSSSCH-----HHHHHHHHHH-
T ss_pred             EEEEEECCHHHHHHHHHHHHHC-----CCEEE-EeCChHHHHHHHhccCcchHHHhhccCCCCH-----HHHHHHHHHh-
Confidence            5778999999999888877542     22333 34677777665 3568999999986654321     4577777664 


Q ss_pred             CCCcEEEEE
Q psy4592         162 RPGGIVCSQ  170 (197)
Q Consensus       162 kpgG~l~~~  170 (197)
                      .|+--+++.
T Consensus        70 ~~~~pvI~l   78 (140)
T d1qkka_          70 DPDLPMILV   78 (140)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCcEEEE
Confidence            555544443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=82.97  E-value=0.54  Score=36.50  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcC
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLP  102 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~  102 (197)
                      +...++|+|+-.|..+..+++.  ....+|+++|.+|...+..++++.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~  259 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  259 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4568999999999877665542  233689999999999998887653

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=82.86  E-value=2.9  Score=25.94  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhh
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      .+|..||-++...+..+..+...     +-.+. ...++.+.+.. ...+||+|++|...+....     -+++.++++.
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~-----g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~G-----~~~~~~~r~~   71 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERS-----GYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDG-----IEVCKQLRQQ   71 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHT-----TCEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCH-----HHHHHHHHHT
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-----CCEEE-EECCHHHHHHHHhcccccEEEecccccCCCC-----chhhhhhhcc
Confidence            47899999999999888887652     12232 44566665543 2457999999986654322     4566666655


Q ss_pred             cCCCcEEEEEc
Q psy4592         161 LRPGGIVCSQA  171 (197)
Q Consensus       161 LkpgG~l~~~~  171 (197)
                      -..--++++..
T Consensus        72 ~~~~~ii~lt~   82 (121)
T d1mvoa_          72 KLMFPILMLTA   82 (121)
T ss_dssp             TCCCCEEEEEC
T ss_pred             CCCCEEEEEEe
Confidence            33334444443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.74  E-value=3.6  Score=27.49  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+++++.+|-|.=+-+.+...+.-..+++.+|+||-  ...+....         ..++  ....+.+    +..|+++.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi--~alqA~md---------Gf~v--~~~~~a~----~~aDi~vT   84 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI--CAIQAVME---------GFNV--VTLDEIV----DKGDFFIT   84 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH--HHHHHHTT---------TCEE--CCHHHHT----TTCSEEEE
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch--hhHHHHhc---------CCcc--CchhHcc----ccCcEEEE
Confidence            567999999887554444333323379999999993  34444432         2232  3433433    45799997


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592         137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT  173 (197)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~  173 (197)
                      ..-.     ....+    .+-.+.||+|.++. |...
T Consensus        85 aTGn-----~~vI~----~~h~~~MKdgaIl~-N~GH  111 (163)
T d1v8ba1          85 CTGN-----VDVIK----LEHLLKMKNNAVVG-NIGH  111 (163)
T ss_dssp             CCSS-----SSSBC----HHHHTTCCTTCEEE-ECSS
T ss_pred             cCCC-----Ccccc----HHHHHHhhCCeEEE-eccc
Confidence            5532     12222    44556788777665 4433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.38  E-value=5.2  Score=26.96  Aligned_cols=83  Identities=10%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             CCCeEEEEeCCchHhHHHH---hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592          57 NPKKVLIVGGGDGGVAREV---LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV  133 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~l---~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~  133 (197)
                      .+++|..+|.|.  ++..+   ++..+ .+|.+.|.++.-        .         ... ...+..+.+.    ..|+
T Consensus        41 ~gk~vgIiG~G~--IG~~va~~l~~~g-~~v~~~d~~~~~--------~---------~~~-~~~~l~ell~----~sDi   95 (181)
T d1qp8a1          41 QGEKVAVLGLGE--IGTRVGKILAALG-AQVRGFSRTPKE--------G---------PWR-FTNSLEEALR----EARA   95 (181)
T ss_dssp             TTCEEEEESCST--HHHHHHHHHHHTT-CEEEEECSSCCC--------S---------SSC-CBSCSHHHHT----TCSE
T ss_pred             cCceEEEecccc--ccccceeeeeccc-cccccccccccc--------c---------cee-eeechhhhhh----ccch
Confidence            457899999986  33333   33344 689999875421        0         011 1234555553    4799


Q ss_pred             EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592         134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS  169 (197)
Q Consensus       134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~  169 (197)
                      |+...|.... ..++++.    +..+.||+|.+|+-
T Consensus        96 v~~~~pl~~~-t~~li~~----~~l~~mk~~ailIN  126 (181)
T d1qp8a1          96 AVCALPLNKH-TRGLVKY----QHLALMAEDAVFVN  126 (181)
T ss_dssp             EEECCCCSTT-TTTCBCH----HHHTTSCTTCEEEE
T ss_pred             hhcccccccc-ccccccc----ceeeeccccceEEe
Confidence            9998875333 2344444    44557788776664

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=82.36  E-value=3.9  Score=25.34  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592          82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL  161 (197)
Q Consensus        82 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L  161 (197)
                      .+|..||-++...+..+..+...     + .+ ....++.+.+.. ..+||+|++|...|....     -++++.+++. 
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~-----g-~v-~~~~~~~~al~~-~~~~dlillD~~mP~~~G-----~~~~~~lr~~-   68 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQL-----G-RV-KTFLTGEDFLND-EEAFHVVVLDVMLPDYSG-----YEICRMIKET-   68 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTT-----E-EE-EEESSHHHHHHC-CSCCSEEEEESBCSSSBH-----HHHHHHHHHH-
T ss_pred             CEEEEEECCHHHHHHHHHHHHhC-----C-EE-EEECCHHHHHhc-CCCCCEEEEeCcccccch-----hHHHHHHhhc-
Confidence            36889999999999998888652     2 23 345678887764 467999999986554422     3566666554 


Q ss_pred             CCCcEEEEEc
Q psy4592         162 RPGGIVCSQA  171 (197)
Q Consensus       162 kpgG~l~~~~  171 (197)
                      .|.-.+++.+
T Consensus        69 ~~~~~ii~it   78 (120)
T d1p2fa2          69 RPETWVILLT   78 (120)
T ss_dssp             CTTSEEEEEE
T ss_pred             CCCCcEEEEe
Confidence            4555444433

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.20  E-value=0.39  Score=34.29  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=24.3

Q ss_pred             CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCH
Q psy4592          58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN   91 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~   91 (197)
                      .++|+.||+|.++++.+......+.+|+.+|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3689999999888776644322236899999654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=81.93  E-value=2.4  Score=27.91  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=41.8

Q ss_pred             CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      .+|..||||.-+  .-..+....+...+..+|.+++..+...+.++.       +.   ...|..+.+.   ...|+|+.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~---~~~~~~~ll~---~~iD~V~I   68 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-------SA---TCTDYRDVLQ---YGVDAVMI   68 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-------CC---CCSSTTGGGG---GCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-------cc---ccccHHHhcc---cccceecc
Confidence            378899998533  223344445557888999999887777665542       11   1245555443   24898887


Q ss_pred             CCC
Q psy4592         137 DSS  139 (197)
Q Consensus       137 ~~~  139 (197)
                      ..+
T Consensus        69 ~tp   71 (167)
T d1xeaa1          69 HAA   71 (167)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=81.31  E-value=5.6  Score=26.43  Aligned_cols=69  Identities=12%  Similarity=0.024  Sum_probs=41.0

Q ss_pred             CeEEEEeCCchHh---HHHHhcCCCCccEE-EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592          59 KKVLIVGGGDGGV---AREVLKHPSVESAY-LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI  134 (197)
Q Consensus        59 ~~vLdiG~G~G~~---~~~l~~~~~~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I  134 (197)
                      .+|..||||.-+-   ...+.+.....+++ .+|.+++..+...+.+..       +   ....|..+.+..  ...|+|
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-------~---~~~~~~~ell~~--~~id~v   71 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-------P---AVFDSYEELLES--GLVDAV   71 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-------C---EEESCHHHHHHS--SCCSEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-------c---ceeeeeeccccc--ccccee
Confidence            4889999986432   22333333334666 458888776655554421       1   234677776654  568988


Q ss_pred             EECCC
Q psy4592         135 ITDSS  139 (197)
Q Consensus       135 ~~~~~  139 (197)
                      +...+
T Consensus        72 ~I~tp   76 (181)
T d1zh8a1          72 DLTLP   76 (181)
T ss_dssp             EECCC
T ss_pred             ecccc
Confidence            87654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=0.59  Score=31.84  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             CCCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCcee
Q psy4592          56 PNPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFD  132 (197)
Q Consensus        56 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D  132 (197)
                      ..+++||.+|+|.-+-+  .++.+. +...++.+.-+++..+.+.......... -...+... ..|...+ ......+|
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~d   92 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAF-AEALASAD   92 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHH-HHHHHTCS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccch-hhhhcccc
Confidence            35679999999743222  223334 4468999998766554433221110000 01122222 2232222 22234689


Q ss_pred             EEEECCCC
Q psy4592         133 VIITDSSD  140 (197)
Q Consensus       133 ~I~~~~~~  140 (197)
                      +|+...+.
T Consensus        93 iiIN~Tp~  100 (182)
T d1vi2a1          93 ILTNGTKV  100 (182)
T ss_dssp             EEEECSST
T ss_pred             eeccccCC
Confidence            99987654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=80.98  E-value=5.3  Score=25.91  Aligned_cols=126  Identities=15%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             CeEEEEeCCc-hH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592          59 KKVLIVGGGD-GG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT  136 (197)
Q Consensus        59 ~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~  136 (197)
                      ++|-.||+|. |. ++..+....-..++..+|++++..+--..-+..-... ...+..+..+|..+ +    .-.|+|+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~-~~~~~~~~~~d~~~-l----~~adiVVi   75 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMAN-LEAHGNIVINDWAA-L----ADADVVIS   75 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG-SSSCCEEEESCGGG-G----TTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccc-cCCccceeccCHHH-h----ccccEEEE
Confidence            5788999864 22 2222333322358999999998653221111100000 12245566677443 2    33699988


Q ss_pred             CCCCCC-------CCCcccc--cHHHHHHHHh---hcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592         137 DSSDPV-------GPAESLF--QASYFELMSR---ALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL  195 (197)
Q Consensus       137 ~~~~~~-------~~~~~l~--~~~~~~~~~~---~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v  195 (197)
                      ..-.+.       .....+.  +...++++.+   ...|++++++.++.    .+.+..+...+. -||.=
T Consensus        76 taG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP----vD~~t~~~~k~s-g~p~~  141 (146)
T d1hyha1          76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP----VDVITALFQHVT-GFPAH  141 (146)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS----HHHHHHHHHHHH-CCCGG
T ss_pred             eccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc----HHHHHHHHHHHh-CCCcc
Confidence            643211       1111111  1233333332   24799998887654    455555443332 25543

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.63  E-value=4.6  Score=24.97  Aligned_cols=68  Identities=13%  Similarity=0.014  Sum_probs=44.9

Q ss_pred             cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592          83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL  161 (197)
Q Consensus        83 ~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L  161 (197)
                      +|..||-++.+.+..+..+...     +-.+. ...++.+.+.. ...+||+|++|...+....     -++++++++.-
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~-----G~~v~-~a~~g~eal~~l~~~~~dliilD~~mP~~~G-----~e~~~~i~~~~   70 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDA-----GHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-----LSLIRRWRSND   70 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHT-----TCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCH-----HHHHHHHHHTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHC-----CCEEE-EECCHHHHHHHHHhcccceeehhccCCCchh-----HHHHHHHHhcC
Confidence            5778999999999888887642     11222 44566555443 2467999999987655422     45777776653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.46  E-value=6.1  Score=29.39  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             CeEEEEeCCchHhHHHHhcCC---CCccEEEEEc-------------CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592          59 KKVLIVGGGDGGVAREVLKHP---SVESAYLVEI-------------DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR  122 (197)
Q Consensus        59 ~~vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~  122 (197)
                      ++||..| |+|.++.++.+..   ....|+++|.             .++.....+..... .......+..++.+|+.+
T Consensus         3 MKVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           3 MRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP-KPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSS-CCTTTTCCCEEEESCTTC
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccc-cccccccceEEEECcccC
Confidence            5888776 6888887655421   3368999983             12222222222111 111134578899999864


Q ss_pred             H--Hhh---cCCceeEEEECCCC
Q psy4592         123 F--MSE---HQQEFDVIITDSSD  140 (197)
Q Consensus       123 ~--~~~---~~~~~D~I~~~~~~  140 (197)
                      .  +..   ...++|.|+.....
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~  103 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAF  103 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCC
T ss_pred             HHHhhhhhhccceeehhhccccc
Confidence            2  111   23568999987653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.43  E-value=6.4  Score=26.52  Aligned_cols=101  Identities=17%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592          57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII  135 (197)
Q Consensus        57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~  135 (197)
                      ..++|..+|+|.-+-..+ +++..+ .++.+.|.....        .      ..  ......+..+.+..    .|+|+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg-~~v~~~d~~~~~--------~------~~--~~~~~~~l~ell~~----sDii~  101 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLG-MYVYFYDIENKL--------P------LG--NATQVQHLSDLLNM----SDVVS  101 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCC--------C------CT--TCEECSCHHHHHHH----CSEEE
T ss_pred             cceEEEEeecccchhhhhhhccccc-ceEeeccccccc--------h------hh--hhhhhhhHHHHHhh----cccee
Confidence            457999999986543322 333343 688888864320        0      01  11222455565544    69999


Q ss_pred             ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-CCcChhHHHHH
Q psy4592         136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-LWYSLDCVGNT  184 (197)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~  184 (197)
                      +..|..... .++.+.++|    +.||+|.+|+ |+.. ...+.+.+.+.
T Consensus       102 i~~plt~~T-~~li~~~~l----~~mk~~a~lI-N~aRG~lvde~aL~~a  145 (188)
T d1sc6a1         102 LHVPENPST-KNMMGAKEI----SLMKPGSLLI-NASRGTVVDIPALADA  145 (188)
T ss_dssp             ECCCSSTTT-TTCBCHHHH----HHSCTTEEEE-ECSCSSSBCHHHHHHH
T ss_pred             ecccCCcch-hhhccHHHH----hhCCCCCEEE-EcCcHHhhhhHHHHHH
Confidence            987754432 245555555    4677755555 5543 33444444333

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=1.9  Score=29.42  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             CCeEEEEeCCchHhHHHHh----cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCce
Q psy4592          58 PKKVLIVGGGDGGVAREVL----KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEF  131 (197)
Q Consensus        58 ~~~vLdiG~G~G~~~~~l~----~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~  131 (197)
                      .++||.+|+ +|.++.++.    +. + .+++++.-+++-+       +..    ...+++++.+|+.+.-.  ..-...
T Consensus         3 ~kkIlV~Ga-tG~iG~~v~~~Ll~~-g-~~V~~~~R~~~~~-------~~~----~~~~~~~~~gD~~d~~~l~~al~~~   68 (205)
T d1hdoa_           3 VKKIAIFGA-TGQTGLTTLAQAVQA-G-YEVTVLVRDSSRL-------PSE----GPRPAHVVVGDVLQAADVDKTVAGQ   68 (205)
T ss_dssp             CCEEEEEST-TSHHHHHHHHHHHHT-T-CEEEEEESCGGGS-------CSS----SCCCSEEEESCTTSHHHHHHHHTTC
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHC-c-CEEEEEEcChhhc-------ccc----cccccccccccccchhhHHHHhcCC
Confidence            368997775 555555544    33 2 6899988776531       111    23578999999875422  112457


Q ss_pred             eEEEECCC
Q psy4592         132 DVIITDSS  139 (197)
Q Consensus       132 D~I~~~~~  139 (197)
                      |+|++...
T Consensus        69 d~vi~~~g   76 (205)
T d1hdoa_          69 DAVIVLLG   76 (205)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEEec
Confidence            99987653

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.11  E-value=5.2  Score=25.28  Aligned_cols=69  Identities=13%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhh
Q psy4592          81 VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRA  160 (197)
Q Consensus        81 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (197)
                      +.+|..||-++......++.+..+     +-.+. ...|+.+.+..-...||+|++|...|....     -++.+++++.
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~-----G~~v~-~a~~g~eal~~l~~~~dlillD~~mP~~dG-----~el~~~ir~~   75 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHL-----GCEVT-TVSSNEECLRVVSHEHKVVFMDVCMPGVEN-----YQIALRIHEK   75 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHT-----TCEEE-EESSHHHHHHHCCTTCSEEEEECCSSTTTT-----THHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHC-----CCEEE-EECCHHHHHHHhhcCCCeEEEEeccCCCch-----HHHHHHHHHh
Confidence            478999999999888888877653     12333 457777777765568999999987655432     2455666544