Psyllid ID: psy4599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSKTKYEKLAGGKTKKSKD
Secondary Structure (PSIPRED)
ccEEEEEEEEEcccccEEEEEEEcccccccccEEEccEEEEEEEEEcccccEEEEEEEEEcEEEEEEEccEEEEEEccccccEEEEEEEcccEEEEEEEEccccccccEEEEcccEEEEEEEccccccEEEEEEEEEEcccEEEccEEEEEEEcccccccccEEEEEEHHcccccccEEEEEEcHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccEEEEEEcccccHHHcEEEEccccEEEEEccccccEEEEEEEEEccccEEEcccEEEEEEcccccccEEEEEcccccEEEEEEEEcccccccEEEEccEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEccccccccHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MDVVVKYTIYNIGNSVATNvvvsdssfppeafeiqggqfkfvidrvppqtnvthvvivqpksygafnfSFAEVSYKasenaedytiynignSVATNvvvsdssfppeafeiqggqfkfvidrvppqtnvthvvivqpksygafnfSFAEVSYkasenaedgdwaafafmtlppllipflLWFQSKTKYEklaggktkkskd
Flexible Loop (DISEMBL)
MDVVVKYTIynignsvatnVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSKTKyeklaggktkkskd
Low Complexity Region (SEG)
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTlppllipfllWFQSKTKYEKLAGGKTKKSKD
Disordered region (IsUnstruct)
**VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQS*****************
Disordered Region (DISOPRED)
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSK****************
Disordered Region (DISEMBL)
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSKTKYEK***********
Disordered Region (DISPRO)
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSKTKYEKLAG********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLWFQSKTKYEKLAGGKTKKSKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
P23438	183	Translocon-associated pro	yes	N/A	0.527	0.579	0.406	3e-21
P43308	183	Translocon-associated pro	yes	N/A	0.721	0.792	0.338	5e-21
Q9CPW5	183	Translocon-associated pro	yes	N/A	0.686	0.754	0.335	6e-21
Q5E9E4	183	Translocon-associated pro	yes	N/A	0.721	0.792	0.338	2e-20
Q22169	188	Translocon-associated pro	yes	N/A	0.437	0.468	0.348	1e-10

>sp|P23438|SSRB_CANFA Translocon-associated protein subunit beta OS=Canis familiaris GN=SSR2 PE=1 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 71/133 (53%), Gaps = 27/133 (20%)

Query: 84  YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
           Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P   G F
Sbjct: 44  YNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYF 103

Query: 144 NFSFAEVSYKASENA-----------EDG----------------DWAAFAFMTLPPLLI 176
           NF+ A V+Y A E+            + G                DWAAF  MTLP + I
Sbjct: 104 NFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGI 163

Query: 177 PFLLWFQSKTKYE 189
           P LLW+ SK KY+
Sbjct: 164 PLLLWYSSKRKYD 176

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
Canis familiaris (taxid: 9615)

>sp|P43308|SSRB_HUMAN Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 53/198 (26%)

Query: 2   DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
           D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct: 39  DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query: 62  SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
             G FNF+ A ++Y A E+                VV+  +S P      QGG       
Sbjct: 99  KAGYFNFTSATITYLAQEDGP--------------VVIGSTSAPG-----QGG------- 132

Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
                      ++ Q +    F+  F              DWAAF  MTLP + IP LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGIPLLLW 168

Query: 182 FQSKTKYEKLAGGKTKKS 199
           + SK KY+     KTKK+
Sbjct: 169 YSSKRKYDT---PKTKKN 183

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Homo sapiens (taxid: 9606)

>sp|Q9CPW5|SSRB_MOUSE Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1

 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 89/188 (47%), Gaps = 50/188 (26%)

Query: 2   DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
           D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct: 39  DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query: 62  SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
             G FNF+ A ++Y A E+                VV+  +S P      QGG       
Sbjct: 99  KAGYFNFTSATITYLAQEDGP--------------VVIGSTSAPG-----QGG------- 132

Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
                      ++ Q +    F+  F              DWAAF  MTLP + IP LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGIPLLLW 168

Query: 182 FQSKTKYE 189
           + SK KY+
Sbjct: 169 YSSKRKYD 176

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Mus musculus (taxid: 10090)

>sp|Q5E9E4|SSRB_BOVIN Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 53/198 (26%)

Query: 2   DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
           D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct: 39  DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query: 62  SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
             G FNF+ A V+Y A E+                VV+  +S P      QGG       
Sbjct: 99  KAGYFNFTSATVTYLAQEDGP--------------VVIGFTSAPG-----QGG------- 132

Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
                      ++ Q +    F+  F              DWAAF  MTLP + +P LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGVPLLLW 168

Query: 182 FQSKTKYEKLAGGKTKKS 199
           + SK KY+     KTKK+
Sbjct: 169 YSSKRKYDT---PKTKKN 183

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Bos taurus (taxid: 9913)

>sp|Q22169|SSRB_CAEEL Translocon-associated protein subunit beta OS=Caenorhabditis elegans GN=trap-2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDS-SFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQ 59
           MD V++Y +YN+G+  A  V + D  SFP  +F+I  G      +++P  +NVTH V+++
Sbjct: 42  MDFVLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIR 101

Query: 60  PKSYGAFNFSFAEVSYKASENAEDYTIYN 88
           P+++G FN++ A+V+Y         T+ N
Sbjct: 102 PRAFGFFNYTAAQVTYYTDNENHHVTLTN 130

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
121543875	196	putative signal sequence receptor beta s	0.756	0.775	0.407	6e-31
312373721	193	hypothetical protein AND_17079 [Anophele	0.731	0.761	0.416	1e-29
389608539	190	signal sequence receptor beta [Papilio x	0.726	0.768	0.4	4e-29
389611275	190	signal sequence receptor beta [Papilio p	0.726	0.768	0.405	9e-29
194749617	190	GF24158 [Drosophila ananassae] gi|190624	0.562	0.594	0.503	2e-28
242015836	188	translocon-associated protein subunit be	0.542	0.579	0.470	4e-28
125976998	190	GA18908 [Drosophila pseudoobscura pseudo	0.562	0.594	0.489	6e-28
195168305	190	GL17832 [Drosophila persimilis] gi|19410	0.562	0.594	0.489	6e-28
170038790	194	translocon-associated protein subunit be	0.741	0.768	0.388	6e-28
225710348	199	Translocon-associated protein subunit be	0.741	0.748	0.380	7e-28

>gi|121543875|gb|ABM55602.1| putative signal sequence receptor beta subunit [Maconellicoccus hirsutus]

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 112/201 (55%), Gaps = 49/201 (24%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQP 60
           MD+V+KYTIYN+GN  A  VV++D SFP +AF + GGQ    IDR+PPQTNV+H V+V+P
Sbjct: 45  MDIVIKYTIYNVGNGPAQEVVINDESFPADAFVVAGGQLNVRIDRIPPQTNVSHTVVVRP 104

Query: 61  KSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI 120
           K++G+FNFS A V YKASE+             AT +  + SS P E   I    F+   
Sbjct: 105 KTFGSFNFSSAYVQYKASES-------------ATELQSAVSSEPGEGRII---NFRDYD 148

Query: 121 DRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLL 180
            +  P     HV+                            DWAAFA MT+P +++PF+L
Sbjct: 149 KKFSP-----HVL----------------------------DWAAFAIMTMPSIIVPFIL 175

Query: 181 WFQSKTKYEKLAGGKTKKSKD 201
           ++ SKTKYE +A  K +K +D
Sbjct: 176 FWSSKTKYEAIAKQKREKKQD 196

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373721|gb|EFR21414.1| hypothetical protein AND_17079 [Anopheles darlingi]

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 105/197 (53%), Gaps = 50/197 (25%)

Query: 2   DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
           DVVVKYT+YN+G+  A NV + D+ F PE FE+ GGQ    IDR+ PQTNVTH+V+V+PK
Sbjct: 45  DVVVKYTLYNVGSGPAVNVRLVDNGFHPEVFEVVGGQLSATIDRIAPQTNVTHIVVVRPK 104

Query: 62  SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
           +YG  NF+ AEV+YKA+E+A +                S SS P E              
Sbjct: 105 TYGYLNFTAAEVNYKATEDASEEQF-------------SISSEPGE-------------- 137

Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
                              GA     AEV +    ++   DW AFAF+TLP L IP+ +W
Sbjct: 138 -------------------GAI---VAEVQFNKQFSSHYLDWLAFAFLTLPSLAIPYAMW 175

Query: 182 FQSKTKYEKLAGGKTKK 198
           + SKTKYE L G  TKK
Sbjct: 176 YSSKTKYE-LLGKPTKK 191

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608539|dbj|BAM17879.1| signal sequence receptor beta [Papilio xuthus]

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 106/195 (54%), Gaps = 49/195 (25%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQP 60
           MD++VKYT+YN+G + A +V + D+ F P+ FE+ GGQ    IDR+PPQTNV+HVV V+ 
Sbjct: 42  MDILVKYTLYNVGTAPAVDVKLVDNGFHPDVFEVVGGQLTAEIDRIPPQTNVSHVVTVRS 101

Query: 61  KSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI 120
             +G FNF+ AEV+Y+ASE++ D   Y+I +S     +V        AF+    +F    
Sbjct: 102 NRFGYFNFTAAEVTYRASEDSTDVQ-YSISSSPGEGAIV--------AFKDYDRKFS--- 149

Query: 121 DRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLL 180
                    +H++                            DWAAFA MTLP L IPF L
Sbjct: 150 ---------SHIL----------------------------DWAAFAVMTLPSLAIPFGL 172

Query: 181 WFQSKTKYEKLAGGK 195
           WF SK+KYEKLA  K
Sbjct: 173 WFSSKSKYEKLAKPK 187

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611275|dbj|BAM19249.1| signal sequence receptor beta [Papilio polytes]

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 104/195 (53%), Gaps = 49/195 (25%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQP 60
           MDV+VKYT+YN+G + A  V + D+ F P+ FE+ GGQ    IDR+PPQTNV+HVV V+ 
Sbjct: 42  MDVLVKYTLYNVGTAPAVEVKLIDTGFHPDVFEVVGGQLTAEIDRIPPQTNVSHVVTVRS 101

Query: 61  KSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI 120
             +G FNF+ AEV+Y+ASE + D   Y+I +S     +V        AF+    +F    
Sbjct: 102 TRFGYFNFTAAEVTYRASEESTDVQ-YSISSSPGEGAIV--------AFKDYDRKFS--- 149

Query: 121 DRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLL 180
                    +H++                            DWAAFA MTLP L IPF L
Sbjct: 150 ---------SHIL----------------------------DWAAFAVMTLPSLAIPFGL 172

Query: 181 WFQSKTKYEKLAGGK 195
           WF SK+KYEKLA  K
Sbjct: 173 WFSSKSKYEKLAKPK 187

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749617|ref|XP_001957235.1| GF24158 [Drosophila ananassae] gi|190624517|gb|EDV40041.1| GF24158 [Drosophila ananassae]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 86/143 (60%), Gaps = 30/143 (20%)

Query: 84  YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
           YTI+N+GN  AT V + DS F PEAFE+ GGQ   V+DR+ PQTN THVV+V+PK++G F
Sbjct: 49  YTIFNVGNGAATKVSLVDSGFHPEAFEVVGGQPTAVVDRIAPQTNFTHVVVVRPKAFGYF 108

Query: 144 NFSFAEVSYKASENAE-----------DG-----------------DWAAFAFMTLPPLL 175
           NF+ AEVSYK  E AE           +G                 DW AFA MTLP L 
Sbjct: 109 NFTAAEVSYKPVEEAETLQLAISSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLA 168

Query: 176 IPFLLWFQSKTKYEKLAGGKTKK 198
           IP  LW QSK+KYE+   GK KK
Sbjct: 169 IPLGLWHQSKSKYER--SGKNKK 189

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015836|ref|XP_002428553.1| translocon-associated protein subunit beta precursor, putative [Pediculus humanus corporis] gi|212513187|gb|EEB15815.1| translocon-associated protein subunit beta precursor, putative [Pediculus humanus corporis]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 27/136 (19%)

Query: 84  YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
           YT+YN+G + A NVV+SD SF PE+F + GGQ    IDR+PP TN THV +++   YG +
Sbjct: 49  YTLYNVGKNAAINVVLSDQSFHPESFVLMGGQLSVKIDRIPPGTNATHVAVIRSTKYGYY 108

Query: 144 NFSFAEVSYKASE--------NAEDG-------------------DWAAFAFMTLPPLLI 176
           NF+ AEVSYK SE         +E G                   DW AFA MTLP L+I
Sbjct: 109 NFTAAEVSYKVSEEGALQYAVTSEPGEGLIVAFRDYDKKFSSHVLDWIAFAIMTLPSLVI 168

Query: 177 PFLLWFQSKTKYEKLA 192
           PF+LW+ SK+KYE+L+
Sbjct: 169 PFVLWYSSKSKYEQLS 184

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125976998|ref|XP_001352532.1| GA18908 [Drosophila pseudoobscura pseudoobscura] gi|54641279|gb|EAL30029.1| GA18908 [Drosophila pseudoobscura pseudoobscura]

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 86/143 (60%), Gaps = 30/143 (20%)

Query: 84  YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
           YTI+N+GN  ATNV + D+ F PEAFE+ GGQ    ++R+ PQTN THVV+V+PK++G F
Sbjct: 49  YTIFNVGNGAATNVALVDNGFHPEAFEVVGGQPTATVERIAPQTNFTHVVVVRPKAFGYF 108

Query: 144 NFSFAEVSYKASENAE-----------DG-----------------DWAAFAFMTLPPLL 175
           NF+ AEVSYK  E AE           +G                 DW AFA MTLP L 
Sbjct: 109 NFTAAEVSYKPVEEAEALQLAISSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLA 168

Query: 176 IPFLLWFQSKTKYEKLAGGKTKK 198
           IP  LW QSK+KYE+   GK KK
Sbjct: 169 IPLGLWHQSKSKYER--AGKNKK 189

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168305|ref|XP_002024972.1| GL17832 [Drosophila persimilis] gi|194108402|gb|EDW30445.1| GL17832 [Drosophila persimilis]

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 86/143 (60%), Gaps = 30/143 (20%)

Query: 84  YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
           YTI+N+GN  ATNV + D+ F PEAFE+ GGQ    ++R+ PQTN THVV+V+PK++G F
Sbjct: 49  YTIFNVGNGAATNVALVDNGFHPEAFEVVGGQPTATVERIAPQTNFTHVVVVRPKAFGYF 108

Query: 144 NFSFAEVSYKASENAE-----------DG-----------------DWAAFAFMTLPPLL 175
           NF+ AEVSYK  E AE           +G                 DW AFA MTLP L 
Sbjct: 109 NFTAAEVSYKPVEEAEALQLAISSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLA 168

Query: 176 IPFLLWFQSKTKYEKLAGGKTKK 198
           IP  LW QSK+KYE+   GK KK
Sbjct: 169 IPLGLWHQSKSKYER--AGKNKK 189

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038790|ref|XP_001847231.1| translocon-associated protein subunit beta [Culex quinquefasciatus] gi|167882477|gb|EDS45860.1| translocon-associated protein subunit beta [Culex quinquefasciatus]

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 101/198 (51%), Gaps = 49/198 (24%)

Query: 2   DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
           D+VVKYT+YN+G   ATNV + D+ F PEAF + GGQ    IDR+ PQTNVTH+ +V+PK
Sbjct: 45  DIVVKYTVYNVGTGAATNVQLVDNGFHPEAFTVVGGQLTATIDRIAPQTNVTHIAVVRPK 104

Query: 62  SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
           ++G FNF+ AEV+Y+ +E              AT +  + SS P E   +   QF     
Sbjct: 105 AFGYFNFTAAEVNYQPTEE-------------ATVLQFAVSSEPGEGAIVAEAQFN---- 147

Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
                           K + +                   DW AFA MTLP L IP+ LW
Sbjct: 148 ----------------KQFSSHYL----------------DWFAFAIMTLPSLAIPYALW 175

Query: 182 FQSKTKYEKLAGGKTKKS 199
           + SKTKYE LA    KK+
Sbjct: 176 YSSKTKYELLAKPAAKKA 193

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225710348|gb|ACO11020.1| Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 104/197 (52%), Gaps = 48/197 (24%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQP 60
           MD+VVKY IYNIG+  A +V VS+  FP ++F++  GQ  F +DR+PP +N TH ++V+P
Sbjct: 50  MDIVVKYGIYNIGDLPAVDVSVSEMGFPDDSFDVASGQTSFKLDRIPPHSNNTHALVVRP 109

Query: 61  KSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI 120
           K +G FNF+ AEV Y+ SE A+D  I  +G S                            
Sbjct: 110 KKFGYFNFTSAEVKYRVSEEADD--IVQVGLS---------------------------- 139

Query: 121 DRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLL 180
                 ++  H VI+  K+Y    FS           A   DW AFA +TLPPL +PF+L
Sbjct: 140 ------SDPGHGVIISLKNYDK-QFS-----------AHILDWIAFAVITLPPLAVPFML 181

Query: 181 WFQSKTKYEKLAGGKTK 197
           W+ SK+KYE +  G  K
Sbjct: 182 WYSSKSKYESIMKGSKK 198

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
FB|FBgn0011016	190	SsRbeta "Signal sequence recep	0.402	0.426	0.567	3.7e-29
ZFIN|ZDB-GENE-010413-1	186	ssr2 "signal sequence receptor	0.402	0.435	0.456	3.2e-21
UNIPROTKB|Q5ZLW9	183	SSR2 "Uncharacterized protein"	0.402	0.442	0.432	4.1e-21
UNIPROTKB|Q5E9E4	183	SSR2 "Translocon-associated pr	0.393	0.431	0.455	4.1e-21
UNIPROTKB|P43308	183	SSR2 "Translocon-associated pr	0.393	0.431	0.443	5.2e-21
UNIPROTKB|F1RLP7	203	SSR2 "Uncharacterized protein"	0.393	0.389	0.443	5.2e-21
UNIPROTKB|F1MW25	212	SSR2 "Translocon-associated pr	0.393	0.372	0.455	1.1e-20
UNIPROTKB|P23438	183	SSR2 "Translocon-associated pr	0.393	0.431	0.455	1.1e-20
MGI|MGI:1913506	183	Ssr2 "signal sequence receptor	0.393	0.431	0.443	1.7e-20
RGD|1308365	183	Ssr2 "signal sequence receptor	0.393	0.431	0.443	1.7e-20

FB|FBgn0011016 SsRbeta "Signal sequence receptor beta" [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 46/81 (56%), Positives = 64/81 (79%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D++V+YTI+N+G+  AT V + DS F PEAF++ GGQ   V+DR+ PQTN THV++V+PK
Sbjct:    44 DLLVRYTIFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVVRPK 103

Query:    62 SYGAFNFSFAEVSYKASENAE 82
             ++G FNF+ AEVSYKA E +E
Sbjct:   104 AFGYFNFTAAEVSYKAVEESE 124

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0006621 "protein retention in ER lumen" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-010413-1 ssr2 "signal sequence receptor, beta" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
 Identities = 37/81 (45%), Positives = 51/81 (62%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y+IYN+G S A  V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    42 DLTLQYSIYNVGTSAALEVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 101

Query:    62 SYGAFNFSFAEVSYKASENAE 82
               G FNF+ A VSY A E  +
Sbjct:   102 KAGYFNFTSASVSYLAQEGGQ 122

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZLW9 SSR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 35/81 (43%), Positives = 52/81 (64%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASENAE 82
               G FNF+ A ++Y A E  +
Sbjct:    99 KAGYFNFTSATITYLAQEGGQ 119

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5E9E4 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A V+Y A E+
Sbjct:    99 KAGYFNFTSATVTYLAQED 117

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P43308 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A ++Y A E+
Sbjct:    99 KAGYFNFTSATITYLAQED 117

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RLP7 SSR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    59 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 118

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A ++Y A E+
Sbjct:   119 KAGYFNFTSATITYLAQED 137

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1MW25 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A V+Y A E+
Sbjct:    99 KAGYFNFTSATVTYLAQED 117

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|P23438 SSR2 "Translocon-associated protein subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 192 (72.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A V+Y A E+
Sbjct:    99 KAGYFNFTSATVTYLAQED 117

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1913506 Ssr2 "signal sequence receptor, beta" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A ++Y A E+
Sbjct:    99 KAGYFNFTSATITYLAQED 117

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1308365 Ssr2 "signal sequence receptor, beta" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query:     2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
             D+ ++Y IYN+G+S A +V +SD SFPPE F I  G      DR+ P +NV+H V+++P 
Sbjct:    39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98

Query:    62 SYGAFNFSFAEVSYKASEN 80
               G FNF+ A ++Y A E+
Sbjct:    99 KAGYFNFTSATITYLAQED 117

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43308	SSRB_HUMAN	No assigned EC number	0.3383	0.7213	0.7923	yes	N/A
Q9CPW5	SSRB_MOUSE	No assigned EC number	0.3351	0.6865	0.7540	yes	N/A
Q5E9E4	SSRB_BOVIN	No assigned EC number	0.3383	0.7213	0.7923	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
pfam05753	181	pfam05753, TRAP_beta, Translocon-associated protei	1e-36

>gnl|CDD|218732 pfam05753, TRAP_beta, Translocon-associated protein beta (TRAPB)

 Score =  125 bits (316), Expect = 1e-36
 Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 49/191 (25%)

Query: 1   MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQP 60
            D+ V YTIYN+G+S A +V + D+SFP +AFE+  G      +R+ P  NV+H  +V+P
Sbjct: 38  RDLTVTYTIYNVGSSPAYDVSLVDNSFPEDAFEVVSGSLSASWERLAPGENVSHTFVVRP 97

Query: 61  KSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI 120
           K  G FNF+ AEV+Y+ASE+                + V+ SS P E             
Sbjct: 98  KKSGYFNFTPAEVTYRASED-------------GAELQVAYSSPPGE------------- 131

Query: 121 DRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLL 180
                      +               AE  Y    +    DW AFA MTLP + IP LL
Sbjct: 132 ---------GGI--------------LAERDYDKKFSPHLLDWVAFAVMTLPSVGIPLLL 168

Query: 181 WFQSKTKYEKL 191
           W+ SK+KYEKL
Sbjct: 169 WWVSKSKYEKL 179

This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG3317|consensus	188		100.0
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	100.0
KOG3317|consensus	188		99.95
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	99.93
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	96.71
COG1470	513	Predicted membrane protein [Function unknown]	96.34
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	96.27
TIGR01451	53	B_ant_repeat conserved repeat domain. This model r	96.08
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	96.06
PF01345	76	DUF11: Domain of unknown function DUF11; InterPro:	95.72
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.51
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	94.83
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	94.18
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	92.8
PF13584	484	BatD: Oxygen tolerance	92.4
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	91.72
TIGR01451	53	B_ant_repeat conserved repeat domain. This model r	90.75
PF01345	76	DUF11: Domain of unknown function DUF11; InterPro:	87.87
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	86.65
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	85.32
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	84.36
PF13584	484	BatD: Oxygen tolerance	83.84
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	82.95

>KOG3317|consensus

Probab=100.00  E-value=5.2e-44  Score=295.49  Aligned_cols=141  Identities=30%  Similarity=0.533  Sum_probs=132.2

Q ss_pred             CceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEeeeEEEEEEeCCC
Q psy4599           1 MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASEN   80 (201)
Q Consensus         1 ~d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~A~VtY~~s~~   80 (201)
                      ||++++|+|||+|+++|+||+|+|+|||.+.||||+|+++++|||||||+|++|++||||+..|.||+++|+|||+++|+
T Consensus        42 rd~~leY~IyNvGsspAldVtLsD~Sfpt~~FeIvkG~~~~swerIpags~vsHsivl~prv~g~f~~t~atVty~~~e~  121 (188)
T KOG3317|consen   42 RDVSLEYDIYNVGSSPALDVTLSDNSFPTKTFEIVKGNLSVSWERIPAGSNVSHSIVLRPRVKGVFNGTPATVTYRIPEK  121 (188)
T ss_pred             eeeEEEEeeEEcCCCcceeEEecCCCCCccceeeeccccccceeecCCCCceEEEEEEeecccceeccCceEEEEEcCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceeeeeeeEEEEecCCCCcc
Q psy4599          81 AEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAED  160 (201)
Q Consensus        81 a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A~v~yr~s~~a~~  160 (201)
                      ..              ++..-.+.|.++.++...++                                  ++|+++  +.
T Consensus       122 g~--------------~~~~~ts~~~~gyila~re~----------------------------------~rr~~~--~~  151 (188)
T KOG3317|consen  122 GA--------------LQEAYTSPPGPGYILAQREP----------------------------------DRRFDP--RL  151 (188)
T ss_pred             Cc--------------eeEEeecCCCCcceeeecCc----------------------------------ccccCh--hH
Confidence            85              46666778887776666665                                  999999  99


Q ss_pred             Cceeeeeehhcchhhhheeeeeehhhhhhhh
Q psy4599         161 GDWAAFAFMTLPPLLIPFLLWFQSKTKYEKL  191 (201)
Q Consensus       161 ~~~~~f~~~~~P~~~~p~~ly~~S~~~y~~~  191 (201)
                      ++|++|++|++|.+++|++||+.||+||++.
T Consensus       152 l~flgfgviv~p~t~ip~lL~~~sKrrysn~  182 (188)
T KOG3317|consen  152 LAFLGFGVIVIPMTVIPILLVATSKRRYSNA  182 (188)
T ss_pred             HHHHhhhhhhhhhhheeeeEEEecccccccc
Confidence            9999999999999999999999999999975

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=100.00  E-value=9.9e-42  Score=285.21  Aligned_cols=142  Identities=49%  Similarity=0.795  Sum_probs=128.4

Q ss_pred             CceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEeeeEEEEEEeCCC
Q psy4599           1 MDVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASEN   80 (201)
Q Consensus         1 ~d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~A~VtY~~s~~   80 (201)
                      ||++|+|+|||+|+++|+||+|.||+||+++|++|+|+++++|+||+||+|++|+|+|+|++.|.|++++|+|+|+++++
T Consensus        38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~  117 (181)
T PF05753_consen   38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG  117 (181)
T ss_pred             cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceeeeeeeEEEEecCCCCcc
Q psy4599          81 AEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAED  160 (201)
Q Consensus        81 a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A~v~yr~s~~a~~  160 (201)
                      +.+             .++.-.+-|.+...+-...+                                  ..|++.  |.
T Consensus       118 ~~~-------------~~~a~Ss~~~~~~I~~~~~~----------------------------------~k~f~~--~~  148 (181)
T PF05753_consen  118 AKE-------------LQVAYSSPPGEGDILAERDY----------------------------------DKKFSS--HV  148 (181)
T ss_pred             Cce-------------eEEEEecCCCcceEEecccc----------------------------------chhhhh--hH
Confidence            765             45555566666554444444                                  777777  89


Q ss_pred             Cceeeeeehhcchhhhheeeeeehhhhhhhh
Q psy4599         161 GDWAAFAFMTLPPLLIPFLLWFQSKTKYEKL  191 (201)
Q Consensus       161 ~~~~~f~~~~~P~~~~p~~ly~~S~~~y~~~  191 (201)
                      ++|+.|++|++|++++|++||++||+||++.
T Consensus       149 ~~w~~f~~~~~~~~~~p~ll~~~sKsky~~~  179 (181)
T PF05753_consen  149 MDWGAFAIMTLPVLLIPYLLWYSSKSKYEKS  179 (181)
T ss_pred             HHHHhHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            9999999999999999999999999999885

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG3317|consensus

Probab=99.95  E-value=1.7e-28  Score=203.39  Aligned_cols=79  Identities=38%  Similarity=0.711  Sum_probs=76.3

Q ss_pred             CCceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceeeeeeeEEEEecCCCC
Q psy4599          80 NAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENA  158 (201)
Q Consensus        80 ~a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A~v~yr~s~~a  158 (201)
                      -..+|+|||+|+++|+||+|+|+|||++.||||+|+++++|||||||+||+|++||||++.|.||+++|+|+|+.+++.
T Consensus        44 ~~leY~IyNvGsspAldVtLsD~Sfpt~~FeIvkG~~~~swerIpags~vsHsivl~prv~g~f~~t~atVty~~~e~g  122 (188)
T KOG3317|consen   44 VSLEYDIYNVGSSPALDVTLSDNSFPTKTFEIVKGNLSVSWERIPAGSNVSHSIVLRPRVKGVFNGTPATVTYRIPEKG  122 (188)
T ss_pred             eEEEEeeEEcCCCcceeEEecCCCCCccceeeeccccccceeecCCCCceEEEEEEeecccceeccCceEEEEEcCCCC
Confidence            3479999999999999999999999999999999999999999999999999999999999999999999999999864

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=99.93  E-value=5.6e-26  Score=190.24  Aligned_cols=81  Identities=46%  Similarity=0.791  Sum_probs=77.3

Q ss_pred             ceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceeeeeeeEEEEecCCCCccC
Q psy4599          82 EDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDG  161 (201)
Q Consensus        82 ~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A~v~yr~s~~a~~~  161 (201)
                      .+|+|||+|+++|+||+|.|++||++.|++++|+++.+|+|||||+|++|+++|+|++.|.|++++|+|+||.++++...
T Consensus        42 V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~~~~~  121 (181)
T PF05753_consen   42 VTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEGAKEL  121 (181)
T ss_pred             EEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCCCcee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999985543


Q ss_pred             c
Q psy4599         162 D  162 (201)
Q Consensus       162 ~  162 (201)
                      +
T Consensus       122 ~  122 (181)
T PF05753_consen  122 Q  122 (181)
T ss_pred             E
Confidence            3

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=96.71  E-value=0.019  Score=41.34  Aligned_cols=60  Identities=25%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCee--eeeEeeeCCCCceEEEEEEEeceeeeEEeee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQF--KFVIDRVPPQTNVTHVVIVQPKSYGAFNFSF   70 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~--~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~   70 (201)
                      +++|.++|.|.|..+|.++.+.        | .+.|..  ......|+||+..+..+.+.+...|.+.+..
T Consensus        20 ~~~i~~~V~N~G~~~~~~~~v~--------~-~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~   81 (101)
T PF07705_consen   20 PVTITVTVKNNGTADAENVTVR--------L-YLDGNSVSTVTIPSLAPGESETVTFTWTPPSPGSYTIRV   81 (101)
T ss_dssp             EEEEEEEEEE-SSS-BEEEEEE--------E-EETTEEEEEEEESEB-TTEEEEEEEEEE-SS-CEEEEEE
T ss_pred             EEEEEEEEEECCCCCCCCEEEE--------E-EECCceeccEEECCcCCCcEEEEEEEEEeCCCCeEEEEE
Confidence            5789999999999998888776        3 233333  3444799999999999999998889888654

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>COG1470 Predicted membrane protein [Function unknown]

Probab=96.34  E-value=0.22  Score=48.03  Aligned_cols=138  Identities=20%  Similarity=0.360  Sum_probs=101.1

Q ss_pred             EEEEEEEEcCcc-ceeeEEEecCCCCCC-CceEecCeeeeeEeeeCCCCceEEEEEEEec---eeeeEEeeeEEEE----
Q psy4599           4 VVKYTIYNIGNS-VATNVVVSDSSFPPE-AFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK---SYGAFNFSFAEVS----   74 (201)
Q Consensus         4 tV~y~IyNvG~s-~A~dV~l~D~~fp~~-~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~---~~G~fn~t~A~Vt----   74 (201)
                      .+...|-|-|.. .-|++++.  ++|+. .-++..|...++-=.|.||+.-.-++.|+|.   ..|.||++=+..+    
T Consensus       287 sf~V~IeN~g~~~d~y~Le~~--g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s~v  364 (513)
T COG1470         287 SFTVSIENRGKQDDEYALELS--GLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSSGV  364 (513)
T ss_pred             EEEEEEccCCCCCceeEEEec--cCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEeccccc
Confidence            356678898876 34555554  34442 1224599999999999999999999999975   5799998877666    


Q ss_pred             ------------------------EEeC-----CCCceeEEEecccceeeeEEEecCCCCCCceEE-ecCceeeeeeeeC
Q psy4599          75 ------------------------YKAS-----ENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEI-QGGQFKFVIDRVP  124 (201)
Q Consensus        75 ------------------------Y~~s-----~~a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~i-v~G~~s~~~~rI~  124 (201)
                                              |+.+     |....+.|.|.|+.+-+||.|+-++ |++ +++ +.+.   +.+.|+
T Consensus       365 ~~e~~lki~~~g~~~~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~-Pqg-Wei~Vd~~---~I~sL~  439 (513)
T COG1470         365 TRELPLKIKNTGSYNELVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNG-PQG-WEIEVDES---TIPSLE  439 (513)
T ss_pred             eeeeeEEEEeccccceeEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecC-Ccc-ceEEECcc---cccccC
Confidence                                    4432     3337889999999999999998763 433 443 3333   799999


Q ss_pred             CCCceEEEEEEe-ee--ecceeeeeee
Q psy4599         125 PQTNVTHVVIVQ-PK--SYGAFNFSFA  148 (201)
Q Consensus       125 pg~nvsH~~vv~-p~--~~G~fn~t~A  148 (201)
                      ||.+.+-.+.++ |.  ..|-|-.+..
T Consensus       440 pge~~tV~ltI~vP~~a~aGdY~i~i~  466 (513)
T COG1470         440 PGESKTVSLTITVPEDAGAGDYRITIT  466 (513)
T ss_pred             CCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence            999999999999 43  3477766554

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=96.27  E-value=0.017  Score=41.38  Aligned_cols=65  Identities=28%  Similarity=0.384  Sum_probs=40.0

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEece---eeeEEeee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKS---YGAFNFSF   70 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~---~G~fn~t~   70 (201)
                      .++++.++-|.|+.++.+++|.=+.  ++.|. +... ..+...|+||++++..+.|+|-.   .|.|.++.
T Consensus         6 ~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~~~~-~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~   73 (78)
T PF10633_consen    6 TVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-VSAS-PASVPSLPPGESVTVTFTVTVPADAAPGTYTVTV   73 (78)
T ss_dssp             EEEEEEEEE--SSS-BSS-EEEEE----TTSE----E-EEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred             EEEEEEEEEECCCCceeeEEEEEeC--CCCcc-ccCC-ccccccCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence            4789999999999999998887432  35566 2222 23445999999999999999543   58877763

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>TIGR01451 B_ant_repeat conserved repeat domain

Probab=96.08  E-value=0.02  Score=38.88  Aligned_cols=38  Identities=32%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKF   41 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~   41 (201)
                      .++.++++-|.|..+|.+|.|.|. .|+. +++++|++..
T Consensus        13 ~v~Yti~v~N~g~~~a~~v~v~D~-lP~g-~~~v~~S~~~   50 (53)
T TIGR01451        13 TITYTITVTNNGNVPATNVVVTDI-LPSG-TTFVSNSVTV   50 (53)
T ss_pred             EEEEEEEEEECCCCceEeEEEEEc-CCCC-CEEEeCcEEE
Confidence            367788889999999999999994 6654 8899998653

This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=96.06  E-value=0.28  Score=46.34  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeee-EeeeCC--CCceEEEEEE---EeceeeeEEeeeEEEEE
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFV-IDRVPP--QTNVTHVVIV---QPKSYGAFNFSFAEVSY   75 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~-~~ri~p--g~nvsH~~vv---~p~~~G~fn~t~A~VtY   75 (201)
                      |+.+..+|+|.|...+.|+.+... .... |.++.+.+... -..+..  |.-.++.+.+   ...+.|.+++.-..-.+
T Consensus        48 ~~~l~v~~~n~~~~~~~~v~v~i~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~V~~~a~~g~y~i~v~~~~~  125 (500)
T COG1361          48 DVDLTVTIENVGELLAEDVKVEIT-PEYP-FSLVSGETLLLSIGTLNFLGGEPATVKFKLTVDENAKSGDYEIDVYVSII  125 (500)
T ss_pred             ceEEEEEeccccccccccEEEEEE-eccc-ceeeEEEeecCCCceeeecCCCcceEEEEEEEcCCCCCCcEEEeEEEEEE
Confidence            678999999999998888777763 2222 77777755222 333333  4444444433   35667777776665312


Q ss_pred             EeCCCC---------------------------------------ceeEEEecccceeeeEEEecCCCCCCceEEecCce
Q psy4599          76 KASENA---------------------------------------EDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQF  116 (201)
Q Consensus        76 ~~s~~a---------------------------------------~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~  116 (201)
                      ...+++                                       ..+.|.|.|+.+|.++.|...+ |...+.-+.+..
T Consensus       126 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~  204 (500)
T COG1361         126 GSSDESEETSFTVEVTIYVEVDVPVIESFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSAN  204 (500)
T ss_pred             eecccceeEEEEeeeeEEEEEeecccceeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeC-Ccceeccccccc
Confidence            211111                                       6789999999999999999865 444444445555


Q ss_pred             -eeeeeeeCCCCceEEEEEEeee---ecceeeeeeeEEEEec
Q psy4599         117 -KFVIDRVPPQTNVTHVVIVQPK---SYGAFNFSFAEVSYKA  154 (201)
Q Consensus       117 -s~~~~rI~pg~nvsH~~vv~p~---~~G~fn~t~A~v~yr~  154 (201)
                       ..-..-+.||.++.-++-+...   +.|.|..... ++|+-
T Consensus       205 ~~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~-i~~~~  245 (500)
T COG1361         205 DTPYIGALGPGESVNVTFSVYAGSNAEPGTYTINLE-ITYKD  245 (500)
T ss_pred             cceeeeeeCCCceEEEEEEEEeecCCCCccEEEEEE-EEEec
Confidence             4679999999999999999888   5788887655 55655

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes

Probab=95.72  E-value=0.025  Score=40.11  Aligned_cols=35  Identities=37%  Similarity=0.552  Sum_probs=29.3

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCe
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQ   38 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~   38 (201)
                      .++.++++.|.|+.+|.+|.|.|. +|.. +++++|+
T Consensus        42 ~v~ytitvtN~G~~~a~nv~v~D~-lp~g-~~~v~~S   76 (76)
T PF01345_consen   42 TVTYTITVTNTGPAPATNVVVTDT-LPAG-LTFVSGS   76 (76)
T ss_pred             EEEEEEEEEECCCCeeEeEEEEEc-CCCC-CEEeCCC
Confidence            367888999999999999999994 6544 8888874

Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=95.51  E-value=0.037  Score=39.61  Aligned_cols=63  Identities=25%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             ceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeee---cceeeeeee
Q psy4599          82 EDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKS---YGAFNFSFA  148 (201)
Q Consensus        82 ~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~---~G~fn~t~A  148 (201)
                      ...++-|.|+.++.++.++-+.  |+++.+-.+  ..+...|+||++++..+.|+|-.   .|.|.++..
T Consensus         9 ~~~tv~N~g~~~~~~v~~~l~~--P~GW~~~~~--~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~   74 (78)
T PF10633_consen    9 VTLTVTNTGTAPLTNVSLSLSL--PEGWTVSAS--PASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVT   74 (78)
T ss_dssp             EEEEEE--SSS-BSS-EEEEE----TTSE---E--EEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred             EEEEEEECCCCceeeEEEEEeC--CCCccccCC--ccccccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence            3578899999998888887543  466662222  24555999999999999999754   488887653

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=94.83  E-value=1.2  Score=41.95  Aligned_cols=73  Identities=25%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             eEEEEEEEEcCccceeeEEEecCCCCCCCceEecCee-eeeEeeeCCCCceEEEEEEEec---eeeeEEeeeEEEEEEe
Q psy4599           3 VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQF-KFVIDRVPPQTNVTHVVIVQPK---SYGAFNFSFAEVSYKA   77 (201)
Q Consensus         3 ~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~-~~~~~ri~pg~nvsH~~vv~p~---~~G~fn~t~A~VtY~~   77 (201)
                      -+++++|.|.|+..|.++.|...+ |...+.-+.+.. ..-..-|.||+++.-++-+.+.   ..|.|... ..++|++
T Consensus       169 ~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~-i~i~~~~  245 (500)
T COG1361         169 NTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNAEPGTYTIN-LEITYKD  245 (500)
T ss_pred             cEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEeecCCCCccEEEE-EEEEEec
Confidence            378999999999999999999854 666677777777 5889999999999999999877   57777664 5677777

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=94.18  E-value=0.32  Score=34.81  Aligned_cols=58  Identities=24%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             ceeEEEecccceeeeEEEecCCCCCCceEEecCc--eeeeeeeeCCCCceEEEEEEeeeecceeeeeee
Q psy4599          82 EDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQ--FKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFA  148 (201)
Q Consensus        82 ~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~--~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A  148 (201)
                      ..++|.|.|..+|.++.+.-         .+.|.  -+.....|+||+..+.++.+.+...|.|.+...
T Consensus        23 i~~~V~N~G~~~~~~~~v~~---------~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~   82 (101)
T PF07705_consen   23 ITVTVKNNGTADAENVTVRL---------YLDGNSVSTVTIPSLAPGESETVTFTWTPPSPGSYTIRVV   82 (101)
T ss_dssp             EEEEEEE-SSS-BEEEEEEE---------EETTEEEEEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred             EEEEEEECCCCCCCCEEEEE---------EECCceeccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence            46688999999888777662         11222  233447899999999999999999999886543

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=92.80  E-value=0.55  Score=35.13  Aligned_cols=63  Identities=24%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             eEEeeeEEEEEEeCCCCceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceee
Q psy4599          65 AFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFN  144 (201)
Q Consensus        65 ~fn~t~A~VtY~~s~~a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn  144 (201)
                      .+.|+|++++=+..+. ..+++-|.|+.+ -++.+.+              +..+ ..|+||.+.+.+|  .|.+.|.|.
T Consensus        29 ~~~f~P~~i~v~~G~~-v~l~~~N~~~~~-h~~~i~~--------------~~~~-~~l~~g~~~~~~f--~~~~~G~y~   89 (104)
T PF13473_consen   29 DFGFSPSTITVKAGQP-VTLTFTNNDSRP-HEFVIPD--------------LGIS-KVLPPGETATVTF--TPLKPGEYE   89 (104)
T ss_dssp             -EEEES-EEEEETTCE-EEEEEEE-SSS--EEEEEGG--------------GTEE-EEE-TT-EEEEEE--EE-S-EEEE
T ss_pred             CCeEecCEEEEcCCCe-EEEEEEECCCCc-EEEEECC--------------CceE-EEECCCCEEEEEE--cCCCCEEEE
Confidence            3478899888777543 468888888775 4444443              2222 7899999886665  799999887


Q ss_pred             ee
Q psy4599         145 FS  146 (201)
Q Consensus       145 ~t  146 (201)
                      |.
T Consensus        90 ~~   91 (104)
T PF13473_consen   90 FY   91 (104)
T ss_dssp             EB
T ss_pred             EE
Confidence            64

>PF13584 BatD: Oxygen tolerance

Probab=92.40  E-value=9.6  Score=35.73  Aligned_cols=66  Identities=18%  Similarity=0.353  Sum_probs=41.6

Q ss_pred             EcCccceeeEEEec----CCCCC-CCceEecCeeeeeEeeeCCC--CceEEEEEEEeceeeeEEeeeEEEEEE
Q psy4599          11 NIGNSVATNVVVSD----SSFPP-EAFEIQGGQFKFVIDRVPPQ--TNVTHVVIVQPKSYGAFNFSFAEVSYK   76 (201)
Q Consensus        11 NvG~s~A~dV~l~D----~~fp~-~~F~iv~G~~~~~~~ri~pg--~nvsH~~vv~p~~~G~fn~t~A~VtY~   76 (201)
                      ..|+.--+.|++.+    ..+|. +.|++.+.+.+.+-.-+.-.  ...+..+.|.|++.|.|.++++.|++.
T Consensus        25 ~~ge~~~l~i~~~~~~~~~~~p~l~~f~v~~~~~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~IP~~~v~v~   97 (484)
T PF13584_consen   25 GLGETFQLTITINGDGDDPDLPELDGFEVLGPSQSSSTSIINGKVSSSTTYTYTLQPKKTGTFTIPPFTVEVD   97 (484)
T ss_pred             cCCCEEEEEEEEecCcccCCCCCCCCeEEcceEEEEEEEEecCceEEEEEEEEEEEecccceEEEceEEEEEC
Confidence            34555455554443    23444 68998444555544333222  235677889999999999999999553

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=91.72  E-value=0.83  Score=34.13  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=12.4

Q ss_pred             eeeCCCCceEEEEEEEeceeeeEEee
Q psy4599          44 DRVPPQTNVTHVVIVQPKSYGAFNFS   69 (201)
Q Consensus        44 ~ri~pg~nvsH~~vv~p~~~G~fn~t   69 (201)
                      ..|+||++.+..  +.|.+.|.|.|.
T Consensus        68 ~~l~~g~~~~~~--f~~~~~G~y~~~   91 (104)
T PF13473_consen   68 KVLPPGETATVT--FTPLKPGEYEFY   91 (104)
T ss_dssp             EEE-TT-EEEEE--EEE-S-EEEEEB
T ss_pred             EEECCCCEEEEE--EcCCCCEEEEEE
Confidence            567777665444  367777777664

>TIGR01451 B_ant_repeat conserved repeat domain

Probab=90.75  E-value=0.61  Score=31.54  Aligned_cols=33  Identities=36%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             eeEEEecccceeeeEEEecCCCCCCceEEecCcee
Q psy4599          83 DYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFK  117 (201)
Q Consensus        83 ~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s  117 (201)
                      .+++-|.|..+|.+|.|.|. .| ++++.+.|++.
T Consensus        17 ti~v~N~g~~~a~~v~v~D~-lP-~g~~~v~~S~~   49 (53)
T TIGR01451        17 TITVTNNGNVPATNVVVTDI-LP-SGTTFVSNSVT   49 (53)
T ss_pred             EEEEEECCCCceEeEEEEEc-CC-CCCEEEeCcEE
Confidence            35678999999999999985 44 67778888864

This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes

Probab=87.87  E-value=0.95  Score=31.90  Aligned_cols=31  Identities=39%  Similarity=0.608  Sum_probs=24.9

Q ss_pred             eeEEEecccceeeeEEEecCCCCCCceEEecCc
Q psy4599          83 DYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQ  115 (201)
Q Consensus        83 ~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~  115 (201)
                      .+++.|.|..+|.+|.|.|. + +.++++++|+
T Consensus        46 titvtN~G~~~a~nv~v~D~-l-p~g~~~v~~S   76 (76)
T PF01345_consen   46 TITVTNTGPAPATNVVVTDT-L-PAGLTFVSGS   76 (76)
T ss_pred             EEEEEECCCCeeEeEEEEEc-C-CCCCEEeCCC
Confidence            45678999999999999986 4 5677777764

Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=86.65  E-value=3.9  Score=30.11  Aligned_cols=67  Identities=18%  Similarity=0.219  Sum_probs=36.7

Q ss_pred             eEEEEEEEEcCccc---------eeeEEEecCCCCCCCceEecCee---eeeEeeeCCCCceEEEEEEEece--eeeEEe
Q psy4599           3 VVVKYTIYNIGNSV---------ATNVVVSDSSFPPEAFEIQGGQF---KFVIDRVPPQTNVTHVVIVQPKS--YGAFNF   68 (201)
Q Consensus         3 ~tV~y~IyNvG~s~---------A~dV~l~D~~fp~~~F~iv~G~~---~~~~~ri~pg~nvsH~~vv~p~~--~G~fn~   68 (201)
                      +.+.++|-|.|+.+         -+|+.|.|. =..+.|..-.|.+   -..=..|+||+..+....+....  .|.|.+
T Consensus         2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~-~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~   80 (82)
T PF12690_consen    2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK-EGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL   80 (82)
T ss_dssp             EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T-T--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred             EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC-CCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence            67899999999854         345555542 1222232223322   33457899999999999998766  788876


Q ss_pred             ee
Q psy4599          69 SF   70 (201)
Q Consensus        69 t~   70 (201)
                      .+
T Consensus        81 ~a   82 (82)
T PF12690_consen   81 EA   82 (82)
T ss_dssp             EE
T ss_pred             eC
Confidence            53

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=85.32  E-value=14  Score=28.01  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=55.4

Q ss_pred             EEeeeEEEEEEeCCCCceeEEEecccce-eeeEEEecC-----CCCCCceEEecCceeeeeeeeCCCCceEEEEEEeee-
Q psy4599          66 FNFSFAEVSYKASENAEDYTIYNIGNSV-ATNVVVSDS-----SFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK-  138 (201)
Q Consensus        66 fn~t~A~VtY~~s~~a~~y~IyNvG~s~-A~dV~l~D~-----sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~-  138 (201)
                      +.+++..|.|..++....++|+|.|+.+ ...+.+.+.     .-+.+.|.+     +=...+|+||+.-+--++..+. 
T Consensus         2 i~i~~trii~~~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~v-----sPp~~~L~pg~~q~vRv~~~~~~   76 (122)
T PF00345_consen    2 IQISPTRIIFNESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIV-----SPPIFRLEPGESQTVRVYRGSKL   76 (122)
T ss_dssp             EEESSSEEEEETTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEE-----ESSEEEEETTEEEEEEEEECSGS
T ss_pred             EEEccEEEEEeCCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEE-----eCCceEeCCCCcEEEEEEecCCC
Confidence            4678889999999999999999999985 346667651     112225532     2345699999998888844322 


Q ss_pred             ---ecceeeeeeeEEEEec
Q psy4599         139 ---SYGAFNFSFAEVSYKA  154 (201)
Q Consensus       139 ---~~G~fn~t~A~v~yr~  154 (201)
                         +--.|-+...++-...
T Consensus        77 ~~~~E~~yrl~~~~iP~~~   95 (122)
T PF00345_consen   77 PIDRESLYRLSFREIPPSE   95 (122)
T ss_dssp             -SSS-EEEEEEEEEEESCC
T ss_pred             CCCceEEEEEEEEEEeccc
Confidence               1245555555555544

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=84.36  E-value=4.5  Score=38.22  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             eEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEeeeEEEE
Q psy4599           3 VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAEVS   74 (201)
Q Consensus         3 ~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~A~Vt   74 (201)
                      ++++|+|.|- +.-..++++.=+  ++++| +.+|.-+.++- |.|++.-+-.|.+.|...|...++.-.|.
T Consensus       487 ~~l~~~I~N~-T~~~~~~~~~me--~s~~F-~fsG~k~~~~~-llP~s~~~~~y~l~pl~~G~~~lP~l~v~  553 (554)
T PF07919_consen  487 FTLSYTIENP-TNHFQTFELSME--PSDDF-MFSGPKQTTFS-LLPFSRHTVRYNLLPLVAGWWILPRLKVR  553 (554)
T ss_pred             EEEEEEEECC-CCccEEEEEEEc--cCCCE-EEECCCcCceE-ECCCCcEEEEEEEEEccCCcEECCcEEEe
Confidence            6899999994 445566655533  34568 99999988887 99999999999999999999988766654

The region in question is approximately 150 residues long.

>PF13584 BatD: Oxygen tolerance

Probab=83.84  E-value=26  Score=32.84  Aligned_cols=134  Identities=15%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             eEEEEEEEEcCccceee-EEEecCCCCCCCceEecCeeeeeEeee-CCCC---ceE-EEEEEEeceeeeEEeeeEEEEEE
Q psy4599           3 VVVKYTIYNIGNSVATN-VVVSDSSFPPEAFEIQGGQFKFVIDRV-PPQT---NVT-HVVIVQPKSYGAFNFSFAEVSYK   76 (201)
Q Consensus         3 ~tV~y~IyNvG~s~A~d-V~l~D~~fp~~~F~iv~G~~~~~~~ri-~pg~---nvs-H~~vv~p~~~G~fn~t~A~VtY~   76 (201)
                      +.++|.+|=...-...+ ..+....+  +.|.+-.=.....+.+- --|.   .+. +.+.|.|.+.|.+.+.++.+...
T Consensus       145 v~lt~~ly~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~  222 (484)
T PF13584_consen  145 VILTLRLYTRNNFRQLGIEELPPPDF--EGFWVEQLGDDRQYEEERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVT  222 (484)
T ss_pred             EEEEEEEEEecCchhccccccCCCCC--CCcEEEECCCCCceeEEEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEE
Confidence            56677777655544222 12222222  23332222223344432 2222   133 45789999999999999999887


Q ss_pred             eCCCCceeEEEecc---------cceeeeEEEec--CCCCCCceEEecCcee--eeee--eeCCCCceEEEEEEeee
Q psy4599          77 ASENAEDYTIYNIG---------NSVATNVVVSD--SSFPPEAFEIQGGQFK--FVID--RVPPQTNVTHVVIVQPK  138 (201)
Q Consensus        77 ~s~~a~~y~IyNvG---------~s~A~dV~l~D--~sfp~~~F~iv~G~~s--~~~~--rI~pg~nvsH~~vv~p~  138 (201)
                      .......-+.+..+         .+.+..|++..  ....++.|.-.-|+++  .+|+  .+..|..++-++.|+..
T Consensus       223 ~~~~~~~~~~fg~~~~~~~~~~~~s~~~~i~V~plP~~~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~  299 (484)
T PF13584_consen  223 VSDPSGRRDFFGGNFGRSRPVSISSEPLTITVKPLPAEGAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGE  299 (484)
T ss_pred             EecccCccCccccccccceeEEecCCCeEEEeccCCcccCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEE
Confidence            75432111122221         34555565554  2244456643335444  4555  57789999999999877

>TIGR02656 cyanin_plasto plastocyanin

Probab=82.95  E-value=4  Score=30.43  Aligned_cols=81  Identities=20%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             EEEEEeceeeeEEeeeEEEEEEeCCCCceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEE
Q psy4599          55 VVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVI  134 (201)
Q Consensus        55 ~~vv~p~~~G~fn~t~A~VtY~~s~~a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~v  134 (201)
                      .+.|- ...|.+.|.|+.|+-+..+   .+++-|.|. ..-++.+.+..+|....+. .+.+..+--.+.||...+++|.
T Consensus         2 ~v~~g-~~~g~~~F~P~~i~v~~G~---~V~~~N~~~-~~H~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pG~t~~~tF~   75 (99)
T TIGR02656         2 TVKMG-ADKGALVFEPAKISIAAGD---TVEWVNNKG-GPHNVVFDEDAVPAGVKEL-AKSLSHKDLLNSPGESYEVTFS   75 (99)
T ss_pred             EEEEe-cCCCceeEeCCEEEECCCC---EEEEEECCC-CCceEEECCCCCccchhhh-cccccccccccCCCCEEEEEeC
Confidence            34443 4478899999999988875   467778764 5677888776666554322 1222222245789999888766


Q ss_pred             Eeeeecceeee
Q psy4599         135 VQPKSYGAFNF  145 (201)
Q Consensus       135 v~p~~~G~fn~  145 (201)
                      -    .|.|.+
T Consensus        76 ~----~G~y~y   82 (99)
T TIGR02656        76 T----PGTYTF   82 (99)
T ss_pred             C----CEEEEE
Confidence            3    565533

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3idu_A	127	Uncharacterized protein; all beta-protein, structu	95.02
2l0d_A	114	Cell surface protein; structural genomics, northea	92.22
3idu_A	127	Uncharacterized protein; all beta-protein, structu	88.49
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	80.96
3hrz_B	252	Cobra venom factor; serine protease, glycosilated,	80.81

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=95.02  E-value=0.24  Score=38.34  Aligned_cols=61  Identities=11%  Similarity=0.117  Sum_probs=43.7

Q ss_pred             ceEEEEEEEEcCccceee--EEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEeeeEE
Q psy4599           2 DVVVKYTIYNIGNSVATN--VVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFAE   72 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~d--V~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~A~   72 (201)
                      .++++.++-|.|+.+|.+  |+|..|+      ++++ ...   -.|+||+..+-.|-..|...|.|++.+-+
T Consensus        34 ~~ti~vtV~N~G~~~a~~~~V~lyvng------~~v~-t~~---v~La~G~s~tv~f~~~~~~~G~~~v~AvV   96 (127)
T 3idu_A           34 LAEYEVHVKNLGGIGVPSTKVRVYING------TLYK-NWT---VSLGPKEEKVLTFNWTPTQEGMYRINATV   96 (127)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETT------EEEE-EEE---EEECTTCEEEEEEEECCSSCEEEEEEEEE
T ss_pred             EEEEEEEEEECCCCccCCcEEEEEECC------EEEe-eEE---eccCCCCeEEEEEEEEcCCCcEEEEEEEE
Confidence            578999999999876555  4444431      1222 222   24999999999999999999999887643

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=92.22  E-value=1  Score=34.25  Aligned_cols=59  Identities=14%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             ceEEEEEEEEcCcc--ceeeEEEecCCCCCCCceEecCee--eeeEeeeCCCCceEEEEEEEec-eeeeEEeeeE
Q psy4599           2 DVVVKYTIYNIGNS--VATNVVVSDSSFPPEAFEIQGGQF--KFVIDRVPPQTNVTHVVIVQPK-SYGAFNFSFA   71 (201)
Q Consensus         2 d~tV~y~IyNvG~s--~A~dV~l~D~~fp~~~F~iv~G~~--~~~~~ri~pg~nvsH~~vv~p~-~~G~fn~t~A   71 (201)
                      .++|+.+|-|+|..  .+..|.|..|           |..  ......|++|++.+=.|...|. ..|.|.+++.
T Consensus        20 ~~ti~atVkN~G~~~a~~~~V~ly~~-----------g~~v~t~~v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~   83 (114)
T 2l0d_A           20 VNTMTATIENQGNKDSTSFNVSLLVD-----------GIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVN   83 (114)
T ss_dssp             EEEEEEEEEECSSSCBCCEEEEEEET-----------TEEEEEEEESCBCBTCEEEEEEEEECCCSCSEEEEEEE
T ss_pred             eEEEEEEEEECCCCCCCCEEEEEEEC-----------CEEEcceecccccCCCEEEEEEEEeecCcCceEEEEEE
Confidence            47899999999987  4555665543           433  2245569999998888888888 4898888764

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=88.49  E-value=2.2  Score=32.85  Aligned_cols=57  Identities=11%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             ceeEEEecccceeeeE--EEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeeecceeeeeee
Q psy4599          82 EDYTIYNIGNSVATNV--VVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSFA  148 (201)
Q Consensus        82 ~~y~IyNvG~s~A~dV--~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~~G~fn~t~A  148 (201)
                      ...++.|.|..+|.+.  .|..++      +++ +...+   .|+||+..+-+|...|...|.|++..-
T Consensus        37 i~vtV~N~G~~~a~~~~V~lyvng------~~v-~t~~v---~La~G~s~tv~f~~~~~~~G~~~v~Av   95 (127)
T 3idu_A           37 YEVHVKNLGGIGVPSTKVRVYING------TLY-KNWTV---SLGPKEEKVLTFNWTPTQEGMYRINAT   95 (127)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEETT------EEE-EEEEE---EECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred             EEEEEEECCCCccCCcEEEEEECC------EEE-eeEEe---ccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence            4677889998765544  444432      122 22222   499999999999999999999988664

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=80.96  E-value=2.7  Score=29.58  Aligned_cols=80  Identities=15%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             EEEEEEeceeeeEEeeeEEEEEEeCCCCceeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEE
Q psy4599          54 HVVIVQPKSYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVV  133 (201)
Q Consensus        54 H~~vv~p~~~G~fn~t~A~VtY~~s~~a~~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~  133 (201)
                      |.|.|. ...|.+.|.|+.|+=+..   ..+++.|.+. ..=+|.+.+..+|. .|+  .+.++..=..++||...+++|
T Consensus         2 ~~V~m~-~~~~~~~F~P~~i~v~~G---dtV~~~n~~~-~~H~v~~~~~~~p~-g~~--~~~~~~~~~~~~~g~~~~~tf   73 (98)
T 1iuz_A            2 QIVKLG-GDDGSLAFVPSKISVAAG---EAIEFVNNAG-FPHNIVFDEDAVPA-GVD--ADAISYDDYLNSKGETVVRKL   73 (98)
T ss_dssp             EEEEES-CTTSCCSEESSEEEECTT---CEEEEEECSS-CCEEEEECTTSSCT-TCC--HHHHCEEEEECSTTCEEEEEC
T ss_pred             EEEEEe-cCCCCcEEeCCEEEECCC---CEEEEEECCC-CCEEEEEeCCCCcc-ccc--cccccccccccCCCCEEEEEc
Confidence            445552 123578999998876543   3678889864 45667777666663 332  122221112688999887766


Q ss_pred             EEeeeecceeee
Q psy4599         134 IVQPKSYGAFNF  145 (201)
Q Consensus       134 vv~p~~~G~fn~  145 (201)
                          .+.|.|.+
T Consensus        74 ----~~~G~y~y   81 (98)
T 1iuz_A           74 ----STPGVYGV   81 (98)
T ss_dssp             ----CSCEEEEE
T ss_pred             ----CCCEEEEE
Confidence                46675533

>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*

Probab=80.81  E-value=9.2  Score=32.05  Aligned_cols=65  Identities=15%  Similarity=0.020  Sum_probs=46.0

Q ss_pred             eEEEEEEEEcCccceeeEEEecCCCCCCCceEecC--eeeeeEeeeCCCCceEEEEEEEeceeeeEEeee
Q psy4599           3 VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGG--QFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSF   70 (201)
Q Consensus         3 ~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G--~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~   70 (201)
                      +.+..++||-.+.. .+|++.=.  ..+.|.....  ....+.-.|++|+..+..+.|+|++-|..+++-
T Consensus        98 ~~l~~~V~Ny~~~~-~~v~V~l~--~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G~~~i~v  164 (252)
T 3hrz_B           98 VEIRAILHNYVNED-IYVRVELL--YNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEI  164 (252)
T ss_dssp             EEEEEEEEECSSSC-EEEEEEEC--CCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEEcccCce-EEEEEEEE--cCCceEeecCCCCceEEEEEECCCCeEEEEEEEEeccCCcEEEEE
Confidence            67899999998754 44444321  1245766542  223445679999999999999999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	93.04
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	91.94
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	89.86
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	88.27
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	87.34
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	86.51

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=93.04  E-value=0.16  Score=35.92  Aligned_cols=62  Identities=10%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEec---eeeeEEeee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK---SYGAFNFSF   70 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~---~~G~fn~t~   70 (201)
                      .++++.+|.|.|+.++.++.|.-+ - ++.|.+     +..-..|+||+..+..+.|.+-   ..|.|.++.
T Consensus        18 ~~~~~vtVtN~g~~~~~~~~~~~~-~-P~GW~v-----~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~   82 (103)
T d1w8oa1          18 QVTVPVAVTNQSGIAVPKPSLQLD-A-SPDWQV-----QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGA   82 (103)
T ss_dssp             EEEEEEEEECCSSSCBSSCEEEEE-C-CTTSEE-----EEEECCBCTTCEEEEEEEEECCTTCCCEEEEEEE
T ss_pred             eEEEEEEEEeCCCCceeeeeEEEc-C-CCCccc-----cCcceeeCCCCcEEEEEEEECCCCCCCceEEEEE
Confidence            468899999999999988777663 2 344654     3444579999999999999964   458887753

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=91.94  E-value=0.25  Score=34.90  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFS   69 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t   69 (201)
                      +++++.++.|-=..+-.|..|.=++-     .+..+........|+||+.+++.+.+.|++.|.-.+.
T Consensus        16 ~~~v~vsf~NPL~~~L~~c~f~vEG~-----GL~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l~   78 (99)
T d1vjja3          16 PVNVQMLFSNPLDEPVRDCVLMVEGS-----GLLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQLL   78 (99)
T ss_dssp             CEEEEEEEECCSSSCBCSEEEEEECT-----TTSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred             eEEEEEEEECCCCCchhCEEEEEEeC-----CCCCccEEEecCccCCCCEEEEEEEEEcCCcccEEEE
Confidence            45666666666555555555442211     1333445567888999999999999999999998764

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=89.86  E-value=0.37  Score=33.87  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=38.2

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeE-eeeCCCCceEEEEEEEeceeeeEEee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVI-DRVPPQTNVTHVVIVQPKSYGAFNFS   69 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~-~ri~pg~nvsH~~vv~p~~~G~fn~t   69 (201)
                      +++++.++.|-=..+-.|+.|.=++     =.+..+...... +.|+||+.+++.+.+.|++.|.-.+.
T Consensus        17 ~~~v~vsF~NPL~~~L~~c~~~vEG-----~GL~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~   80 (98)
T d2q3za3          17 KLVAEVSLQNPLPVALEGCTFTVEG-----AGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLV   80 (98)
T ss_dssp             CEEEEEEEECCSSSCBCSEEEEEEC-----TTTCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred             eEEEEEEEECCCCCchhCEEEEEEc-----CCcCcCcEEEeCCCccCCCCEEEEEEEEEcCCcccEEEE
Confidence            3445555555444444444443211     012233344444 35999999999999999999998764

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=88.27  E-value=0.59  Score=32.90  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=23.8

Q ss_pred             eeeCCCCceEEEEEEEeceeeeEEee
Q psy4599          44 DRVPPQTNVTHVVIVQPKSYGAFNFS   69 (201)
Q Consensus        44 ~ri~pg~nvsH~~vv~p~~~G~fn~t   69 (201)
                      ..|+||+.+++.+.+.|++.|.-.+.
T Consensus        54 ~~v~p~~~~~~~~~~~P~~~G~~~L~   79 (101)
T d1g0da3          54 GAVAPSGKVSVKLSFSPMRTGVRKLL   79 (101)
T ss_dssp             SEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             CCcCCCCEEEEEEEEEcCCcccEEEE
Confidence            57999999999999999999998764

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=87.34  E-value=0.68  Score=32.49  Aligned_cols=59  Identities=7%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             eeEEEecccceeeeEEEecCCCCCCceEEecCceeeeeeeeCCCCceEEEEEEeeee---cceeeeeee
Q psy4599          83 DYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKS---YGAFNFSFA  148 (201)
Q Consensus        83 ~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~rI~pg~nvsH~~vv~p~~---~G~fn~t~A  148 (201)
                      ..++.|.|+.++.++.+.-+ - ++++.+     ...-..|+||+..+..+.|.+-.   .|.|.++..
T Consensus        22 ~vtVtN~g~~~~~~~~~~~~-~-P~GW~v-----~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~   83 (103)
T d1w8oa1          22 PVAVTNQSGIAVPKPSLQLD-A-SPDWQV-----QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGAT   83 (103)
T ss_dssp             EEEEECCSSSCBSSCEEEEE-C-CTTSEE-----EEEECCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred             EEEEEeCCCCceeeeeEEEc-C-CCCccc-----cCcceeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence            56788999999888777664 2 355554     33445699999999999999754   398888654

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=86.51  E-value=1.4  Score=30.76  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=44.8

Q ss_pred             ceEEEEEEEEcCccceeeEEEecCCCCCCCceEecCeeeeeEeeeCCCCceEEEEEEEeceeeeEEeee
Q psy4599           2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAFNFSF   70 (201)
Q Consensus         2 d~tV~y~IyNvG~s~A~dV~l~D~~fp~~~F~iv~G~~~~~~~ri~pg~nvsH~~vv~p~~~G~fn~t~   70 (201)
                      +++++.++.|-=..+-.|+.|.=++-.     +.+ ........|+||+.+++.+.+.|++.|.-.+.+
T Consensus        18 ~~~v~v~F~NPL~~~L~nc~~~vEG~G-----L~~-~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l~a   80 (100)
T d1ex0a3          18 DMTVTVQFTNPLKETLRNVWVHLDGPG-----VTR-PMKKMFREIRPNSTVQWEEVCRPWVSGHRKLIA   80 (100)
T ss_dssp             CEEEEEEEECCSSSCEEEEEEEEEETT-----TEE-EEEEEEEEECTTCEEEEEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEEECCCCCchhCEEEEEEcCC-----Cce-eeEEecCccCCCCEEEEEEEEecCCcccEEEEE
Confidence            566677777766666666665532211     222 346778999999999999999999999987643