Psyllid ID: psy4606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF
Secondary Structure (PSIPRED)
cccEEEEcccEEEcccccccEEEcccccEEEEEEEEEEccccEEEEcccccEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccEEEEccccEEEEEEEccccccEEEEEEccccEEEEEcccEEEccccccc
Coil and Loop (DISEMBL)
mgyldvvvppdilneesssdimapeggtIKLVCkakgyprphitwkredGQEIIikegntmvpkskdif
Flexible Loop (DISEMBL)
MGYLDVVVPPDIlneesssdimapeGGTIKLVCKAKgyprphitwkredgqeiiikegntmvpkskdif
Low Complexity Region (SEG)
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF
Disordered region (IsUnstruct)
*************************GGTIKLVCKAKGYPRPHITWKREDGQEIII**************
Disordered Region (DISOPRED)
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ****************IF
Disordered Region (DISEMBL)
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF
Disordered Region (DISPRO)
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.855	0.011	0.416	5e-07
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.579	0.111	0.4	3e-05
Q5IS61	345	Opioid-binding protein/ce	yes	N/A	0.826	0.165	0.390	8e-05
Q14982	345	Opioid-binding protein/ce	yes	N/A	0.826	0.165	0.390	8e-05
Q98892	337	Opioid-binding protein/ce	no	N/A	0.681	0.139	0.448	0.0001
Q98919	338	Limbic system-associated	no	N/A	0.608	0.124	0.545	0.0001
P11834	345	Opioid-binding protein/ce	no	N/A	0.826	0.165	0.375	0.0001
Q62813	338	Limbic system-associated	yes	N/A	0.608	0.124	0.522	0.0001
Q13449	338	Limbic system-associated	no	N/A	0.608	0.124	0.522	0.0002
Q8BLK3	341	Limbic system-associated	no	N/A	0.608	0.123	0.522	0.0002

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 4    LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
            ++V+VPP I NE+    I  PEG T +L C A G+P P +TW + DGQ + +++   M P
Sbjct: 2472 VEVLVPPSIENEDLEEVIKVPEGQTAQLECNATGHPPPKVTWFK-DGQSLTVEDPYEMSP 2530

Mus musculus (taxid: 10090)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 10  PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
           P ++++ S+  ++A EG  +++ C A GYP P ITW+RE+
Sbjct: 134 PPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRREN 173

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           +L V VPP I+N   SSDI   EG ++ L+C A G P P +TW+      + +KEG   V
Sbjct: 129 HLIVQVPPQIMN--ISSDITVNEGSSVTLLCLAIGRPEPTVTWR-----HLSVKEGQGFV 181

Query: 63  PKSK 66
            + +
Sbjct: 182 SEDE 185

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

>sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           +L V VPP I+N   SSDI   EG ++ L+C A G P P +TW+      + +KEG   V
Sbjct: 129 HLIVQVPPQIMN--ISSDITVNEGSSVTLLCLAIGRPEPTVTWR-----HLSVKEGQGFV 181

Query: 63  PKSK 66
            + +
Sbjct: 182 SEDE 185

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Homo sapiens (taxid: 9606)

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           +L V VPP I+N   SSDI   EG ++ L+C A G P P +TW+   G+
Sbjct: 122 HLIVQVPPQIVN--ISSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSGK 168

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

>sp|Q98919|LSAMP_CHICK Limbic system-associated membrane protein OS=Gallus gallus PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
           YL V VPP I N   SSDI   EG  + LVC A G P P ITW+
Sbjct: 125 YLIVQVPPKISN--ISSDITVNEGSNVTLVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Probably serves as a recognition molecule for the formation of limbic connections.

Gallus gallus (taxid: 9031)

>sp|P11834|OPCM_BOVIN Opioid-binding protein/cell adhesion molecule OS=Bos taurus GN=OPCML PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           +L V VPP I+N   SSD+   EG ++ L+C A G P P +TW+      + +KEG   V
Sbjct: 129 HLIVQVPPQIMN--ISSDVTVNEGSSVTLLCLAIGRPEPTVTWR-----HLSVKEGQGFV 181

Query: 63  PKSK 66
            + +
Sbjct: 182 SEDE 185

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Bos taurus (taxid: 9913)

>sp|Q62813|LSAMP_RAT Limbic system-associated membrane protein OS=Rattus norvegicus GN=Lsamp PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
           YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct: 125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Rattus norvegicus (taxid: 10116)

>sp|Q13449|LSAMP_HUMAN Limbic system-associated membrane protein OS=Homo sapiens GN=LSAMP PE=1 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
           YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct: 125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Homo sapiens (taxid: 9606)

>sp|Q8BLK3|LSAMP_MOUSE Limbic system-associated membrane protein OS=Mus musculus GN=Lsamp PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
           YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct: 125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
328717533	177	PREDICTED: lachesin-like [Acyrthosiphon	0.927	0.361	0.625	3e-19
270014807	498	hypothetical protein TcasGA2_TC010789 [T	0.826	0.114	0.631	1e-17
91092716	417	PREDICTED: similar to CG32791 CG32791-PA	0.826	0.136	0.631	3e-17
221500550	555	CG42343, isoform C [Drosophila melanogas	0.942	0.117	0.569	6e-17
268607756	382	RE55915p [Drosophila melanogaster]	0.942	0.170	0.569	6e-17
350398576	434	PREDICTED: lachesin-like [Bombus impatie	0.855	0.135	0.627	7e-17
157104327	343	hypothetical protein AaeL_AAEL004077 [Ae	0.826	0.166	0.649	1e-16
307213848	224	Lachesin [Harpegnathos saltator]	0.855	0.263	0.593	1e-16
242004450	337	lachesin precursor, putative [Pediculus	0.855	0.175	0.610	2e-16
380014902	417	PREDICTED: lachesin-like, partial [Apis	0.826	0.136	0.649	2e-16

>gi|328717533|ref|XP_001945910.2| PREDICTED: lachesin-like [Acyrthosiphon pisum]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 55/64 (85%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
           MGYLDVV+PPDI+ E++S D+M PEGGT+KL C+AKGYP+PH+ W+REDG+EI+IK+ ++
Sbjct: 113 MGYLDVVIPPDIIYEDTSGDVMVPEGGTVKLTCRAKGYPKPHVLWRREDGREIVIKDASS 172

Query: 61  MVPK 64
              K
Sbjct: 173 TKTK 176

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014807|gb|EFA11255.1| hypothetical protein TcasGA2_TC010789 [Tribolium castaneum]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 49/57 (85%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
           +G+LDVVVPPD + EE+S D+M PEGGT+KL C+A+G+P PH+ W+REDG +III+E
Sbjct: 205 LGFLDVVVPPDFIPEETSGDVMVPEGGTVKLTCRARGHPEPHVQWRREDGSDIIIRE 261

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092716|ref|XP_972399.1| PREDICTED: similar to CG32791 CG32791-PA [Tribolium castaneum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 49/57 (85%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
           +G+LDVVVPPD + EE+S D+M PEGGT+KL C+A+G+P PH+ W+REDG +III+E
Sbjct: 124 LGFLDVVVPPDFIPEETSGDVMVPEGGTVKLTCRARGHPEPHVQWRREDGSDIIIRE 180

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221500550|ref|NP_001138225.1| CG42343, isoform C [Drosophila melanogaster] gi|221500563|ref|NP_001138226.1| CG42343, isoform F [Drosophila melanogaster] gi|220901842|gb|ACL82954.1| CG42343, isoform C [Drosophila melanogaster] gi|220901843|gb|ACL82955.1| CG42343, isoform F [Drosophila melanogaster]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 54/65 (83%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
           L+VV+PPDI+NEE+S D+M PEGG+ KLVC+A+G+P+P ITW+REDG+EII + G+    
Sbjct: 205 LEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKT 264

Query: 64  KSKDI 68
           K++ +
Sbjct: 265 KAQSV 269

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|268607756|gb|ACZ06884.1| RE55915p [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 54/65 (83%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
          L+VV+PPDI+NEE+S D+M PEGG+ KLVC+A+G+P+P ITW+REDG+EII + G+    
Sbjct: 32 LEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKT 91

Query: 64 KSKDI 68
          K++ +
Sbjct: 92 KAQSV 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398576|ref|XP_003485238.1| PREDICTED: lachesin-like [Bombus impatiens]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 51/59 (86%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
            +L+VV+PPDI++EE+S+D+M PEGG+ KLVCKA+GYP+P I WKREDG EII + G++
Sbjct: 148 AFLEVVIPPDIISEETSNDLMVPEGGSAKLVCKARGYPKPEIVWKREDGAEIISRAGSS 206

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104327|ref|XP_001648355.1| hypothetical protein AaeL_AAEL004077 [Aedes aegypti] gi|108880339|gb|EAT44564.1| AAEL004077-PA, partial [Aedes aegypti]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
            +L+VV+PPDI+ EE+S D+M PEGG+ KLVCKA+GYP+P ITW+REDG+EII + G
Sbjct: 100 AFLEVVIPPDIVYEETSGDMMVPEGGSAKLVCKARGYPKPKITWRREDGREIIARNG 156

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213848|gb|EFN89131.1| Lachesin [Harpegnathos saltator]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
            +L+VV+PPDI++EE+++D+M PEGG  KLVCKA+GYP+P I W+REDG EII + G++
Sbjct: 64  AFLEVVIPPDIISEETTNDLMVPEGGAAKLVCKARGYPKPDIMWRREDGTEIISRAGHS 122

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004450|ref|XP_002423099.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212506045|gb|EEB10361.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 1  MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
          +GYL+VVVPPD + E++S DIM PEGG++KL CKA+GYP PH+ W+RED  +II++E N
Sbjct: 13 LGYLEVVVPPDFIPEDTSGDIMVPEGGSVKLTCKARGYPLPHVLWRREDSADIILREPN 71

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014902|ref|XP_003691454.1| PREDICTED: lachesin-like, partial [Apis florea]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
            +L+VV+PPDI++EE+S+D+M PEGG+ KLVCKA+GYP+P I WKREDG EII + G
Sbjct: 133 AFLEVVIPPDIISEETSNDLMVPEGGSAKLVCKARGYPKPDIVWKREDGAEIISRAG 189

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.942	0.117	0.569	1e-17
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.826	0.151	0.491	3.9e-11
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.811	0.119	0.517	2.7e-10
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.855	0.011	0.416	1.8e-06
UNIPROTKB|F1S0Y1	4061	F1S0Y1 "Uncharacterized protei	0.710	0.012	0.44	1.3e-05
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.652	0.125	0.413	1.3e-05
UNIPROTKB|Q98919	338	Q98919 "Limbic system-associat	0.608	0.124	0.545	1.9e-05
UNIPROTKB|Q13449	338	LSAMP "Limbic system-associate	0.608	0.124	0.522	2.5e-05
RGD|71102	338	Lsamp "limbic system-associate	0.608	0.124	0.522	2.5e-05
MGI|MGI:1261760	341	Lsamp "limbic system-associate	0.608	0.123	0.522	2.6e-05

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 37/65 (56%), Positives = 54/65 (83%)

Query:     4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
             L+VV+PPDI+NEE+S D+M PEGG+ KLVC+A+G+P+P ITW+REDG+EII + G+    
Sbjct:   205 LEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKT 264

Query:    64 KSKDI 68
             K++ +
Sbjct:   265 KAQSV 269

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query:     1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
             MGYLDVVVPPDI++ ++S D++   G  + L C A G P P ITW+RE+   I+I +
Sbjct:   124 MGYLDVVVPPDIVDYQTSQDVVRSTGQNVTLTCSATGVPMPTITWRREEATPILISD 180

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query:     2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
             G++ VVVPP+I +  +SSDI+  EG  + L CKAKG P P I WKR+DG +I+I +
Sbjct:   149 GFVKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIVINK 204

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query:     4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
             ++V+VPP I NE+    I  PEG T +L C A G+P P +TW + DGQ + +++   M P
Sbjct:  2472 VEVLVPPSIENEDLEEVIKVPEGQTAQLECNATGHPPPKVTWFK-DGQSLTVEDPYEMSP 2530

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|F1S0Y1 F1S0Y1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 121 (47.7 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query:     4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             ++V+VPP I NE+    I  PEG T  L C A G+P+P++TW + DG+ +
Sbjct:  1420 VEVLVPPSIENEDVEEAIRVPEGQTAHLTCNATGHPQPNVTWFK-DGRPL 1468

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query:     4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
             L V  PP ++++ S+  ++A EG  +++ C A GYP P ITW+RE+
Sbjct:   129 LSVRRPP-VISDNSTQSVVASEGSEVQMECYASGYPTPTITWRREN 173

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q98919 Q98919 "Limbic system-associated membrane protein" [Gallus gallus (taxid:9031)]

 Score = 107 (42.7 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/44 (54%), Positives = 26/44 (59%)

Query:     3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
             YL V VPP I N   SSDI   EG  + LVC A G P P ITW+
Sbjct:   125 YLIVQVPPKISN--ISSDITVNEGSNVTLVCMANGRPEPVITWR 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q13449 LSAMP "Limbic system-associated membrane protein" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query:     3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
             YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct:   125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|71102 Lsamp "limbic system-associated membrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query:     3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
             YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct:   125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)]

 Score = 106 (42.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query:     3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
             YL V VPP I N   SSD+   EG  + LVC A G P P ITW+
Sbjct:   125 YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWR 166

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62813	LSAMP_RAT	No assigned EC number	0.5227	0.6086	0.1242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-04
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	2e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	6e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	7e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	7e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-04
PHA03376	221	PHA03376, PHA03376, BARF1; Provisional	0.003

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 46.0 bits (109), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
             +   EG ++ L C+A G P P +TW ++ G+ +     
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR 41

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 46.0 bits (109), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
             +   EG ++ L C+A G P P +TW ++ G+ +     
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR 41

Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 40.2 bits (94), Expect = 3e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
          I  P G +++L C A G PRP ITW + D + +   E 
Sbjct: 4  IARPVGSSVRLKCVASGNPRPDITWLK-DNKPLTPTEI 40

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 38.2 bits (89), Expect = 1e-05
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          EG ++ L C A+G P P+ITW + DG+ +
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLK-DGKPL 28

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 3e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           D+   EG + +  C   G P P ++W + DGQ +
Sbjct: 8  KDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPL 41

Length = 90

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             P G T++L C A G PRP ITW + DG+  
Sbjct: 4  HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPF 35

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQ 51
          EG T+  +C+A+GYP+P I W +   Q
Sbjct: 1  EGQTVDFLCEAQGYPQPVIAWTKGGSQ 27

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 25 EGGTIKLVCKAKGYPRPHITWKR 47
          E G   L CKA+G P P ITWKR
Sbjct: 15 ENGAATLSCKAEGEPIPEITWKR 37

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 23 APEGGTIKLVCKAKGYPRPHITWKR 47
          A E   I L C+A+G P P ITW+R
Sbjct: 13 AVELEQITLTCEAEGDPIPEITWRR 37

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
          PP I+  E  SD++  +G    L CKA+G P P I W + +GQ +   + + 
Sbjct: 1  PPRIV--EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDP 49

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 34.0 bits (78), Expect = 6e-04
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 26 GGTIKLVCKAKGYPRPHITWKREDGQEI 53
          G ++ L C   G P+  +TW +E     
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLE 28

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 15/64 (23%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR---------------EDGQEI 53
          PP I   +S  +  A  G ++ L C A G+P P +TW +               EDG E+
Sbjct: 1  PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEM 60

Query: 54 IIKE 57
           I +
Sbjct: 61 TILD 64

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 34.1 bits (78), Expect = 7e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 26 GGTIKLVCKAKGYPRPHITW-KREDGQEIIIKEGNTMV 62
          G T    C   G P P ITW K+  G+E +I   N + 
Sbjct: 1  GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR 38

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 29 IKLVCKAKGYPRPHITWKREDGQ 51
          + L C A G P P ITW +    
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKP 23

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|177613 PHA03376, PHA03376, BARF1; Provisional

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 7   VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52
           VV P  L+  S      P+   + + C    +P PH+ W   +G E
Sbjct: 121 VVKPLTLSVHSERSQF-PDFSVLTVTCTVNAFPHPHVQWLMPEGVE 165

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.37
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.32
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.3
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.28
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.26
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.23
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.19
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.18
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.18
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.17
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.16
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.15
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.12
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.11
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.1
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.09
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.08
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.07
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.07
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.06
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.05
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.04
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.01
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.01
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.01
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.01
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.0
KOG3513|consensus	1051		99.0
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.99
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.99
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.99
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.97
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.96
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.95
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.94
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.94
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.93
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.93
KOG4194|consensus	873		98.92
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.91
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.89
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.88
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.88
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.88
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.87
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.87
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.86
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.86
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.85
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.85
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.83
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.81
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.81
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.79
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.78
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.78
KOG4221|consensus	1381		98.78
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.76
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.76
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.72
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.71
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.71
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.7
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.67
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.66
KOG3513|consensus	1051		98.66
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.65
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.63
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.62
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.61
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.61
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.6
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.6
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.59
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.59
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.56
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.56
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.52
KOG4221|consensus	1381		98.51
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.5
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.5
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.49
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.46
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.46
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.45
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.45
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.44
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.42
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.42
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.41
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.4
KOG4222|consensus	1281		98.4
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.39
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.35
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.34
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.32
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.31
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.31
PHA02785	326	IL-beta-binding protein; Provisional	98.3
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.3
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.3
KOG4222|consensus	1281		98.28
KOG4194|consensus	873		98.27
PHA02826	227	IL-1 receptor-like protein; Provisional	98.25
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.24
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.22
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.22
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.17
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.14
smart00407	75	IGc1 Immunoglobulin C-Type.	98.11
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.09
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.08
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.05
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.05
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.03
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.02
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.01
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.01
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.97
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.9
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.88
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.87
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.82
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.81
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.74
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.74
smart00409	86	IG Immunoglobulin.	97.74
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.74
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.74
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.73
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.63
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.62
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.55
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.54
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.51
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.51
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.46
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.35
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.34
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.34
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.29
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.15
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.03
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.83
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.82
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	96.5
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.39
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.39
PHA02826	227	IL-1 receptor-like protein; Provisional	96.3
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.27
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.1
PHA02785	326	IL-beta-binding protein; Provisional	96.1
PHA03376	221	BARF1; Provisional	95.96
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.95
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	95.87
PHA02865	338	MHC-like TNF binding protein; Provisional	95.85
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.75
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	95.57
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.41
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	95.35
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.3
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	95.27
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	95.26
PHA02987	189	Ig domain OX-2-like protein; Provisional	95.22
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	95.01
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	94.77
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	94.7
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.47
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	94.46
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	94.33
KOG3515|consensus	741		94.11
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	93.87
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	93.11
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	92.88
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	92.23
PHA03052	69	Hypothetical protein; Provisional	92.22
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	92.14
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	91.62
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	91.21
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	91.09
smart00406	81	IGv Immunoglobulin V-Type.	90.53
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	90.38
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	90.14
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	89.85
PHA03269	566	envelope glycoprotein C; Provisional	89.78
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	89.26
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	88.78
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	84.77
KOG3515|consensus	741		84.61
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	83.83
PHA03273	486	envelope glycoprotein C; Provisional	80.82
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	80.36

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.37  E-value=4.3e-12  Score=59.63  Aligned_cols=44  Identities=39%  Similarity=0.843  Sum_probs=37.7

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|+| +|..+..
T Consensus         1 ~P~i~~~--p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~   44 (100)
T cd07693           1 PPRIVEH--PSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET   44 (100)
T ss_pred             CCeEEec--CceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence            5777776  677888999999999999999999999999 7776643

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.32  E-value=2e-11  Score=57.85  Aligned_cols=45  Identities=27%  Similarity=0.486  Sum_probs=37.9

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.|...  +....+..|+.+.|.|.+.|.|.|.+.|+| +++.+..+.
T Consensus         1 p~~~~~--p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~   45 (98)
T cd05762           1 PQIIQF--PEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE   45 (98)
T ss_pred             CceEEC--CcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC
Confidence            456665  677888999999999999999999999999 888876444

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.30  E-value=2.7e-11  Score=57.00  Aligned_cols=43  Identities=33%  Similarity=0.657  Sum_probs=32.2

Q ss_pred             CEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          10 PDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        10 p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      |.++..  +.++.+   .+|+.+.|.|.+.|.|.|.++|++ ++..+..
T Consensus         2 P~f~~~--p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~   47 (94)
T cd05848           2 PVFVQE--PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDT   47 (94)
T ss_pred             CeeEEC--CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECcc
Confidence            555555  333333   247899999999999999999999 7777653

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.28  E-value=3.8e-11  Score=56.14  Aligned_cols=45  Identities=33%  Similarity=0.778  Sum_probs=38.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .||.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         2 ~~~~~~~~--p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~   46 (92)
T cd05747           2 LPATILTK--PRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVS   46 (92)
T ss_pred             CCCccccc--CccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCC
Confidence            47888776  677889999999999999999999999999 6766543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.26  E-value=2e-11  Score=56.77  Aligned_cols=42  Identities=33%  Similarity=0.559  Sum_probs=35.2

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +|.+...  +.+..+.+|+.+.|.|.+.|.|.|.++|++ ++..+
T Consensus         1 ~p~i~~~--~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~   42 (88)
T cd05851           1 PADINVK--FKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPM   42 (88)
T ss_pred             CCceEEc--cccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCC
Confidence            4667666  667788899999999999999999999999 55544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.23  E-value=1e-10  Score=54.91  Aligned_cols=47  Identities=36%  Similarity=0.772  Sum_probs=35.7

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ||.+...+......+..|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~   47 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG   47 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC
Confidence            455544332445678899999999999999999999999 77666543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.19  E-value=1.8e-10  Score=54.14  Aligned_cols=42  Identities=31%  Similarity=0.629  Sum_probs=31.5

Q ss_pred             CEEeecCCCceEEecC---CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          10 PDILNEESSSDIMAPE---GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |.+...  +......+   |+.+.|.|.+.|.|.|.++|++ +|..+.
T Consensus         2 P~f~~~--P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~   46 (94)
T cd05850           2 PVFEEQ--PSSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIK   46 (94)
T ss_pred             CeeEEC--CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECc
Confidence            455554  44444444   4689999999999999999999 787765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.18  E-value=2.8e-10  Score=53.21  Aligned_cols=39  Identities=26%  Similarity=0.650  Sum_probs=33.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~   46 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD   46 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC
Confidence            556778899999999999999999999999 777665443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.18  E-value=2.3e-10  Score=53.80  Aligned_cols=42  Identities=24%  Similarity=0.602  Sum_probs=30.5

Q ss_pred             CEEeecCCCceEEec---CCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          10 PDILNEESSSDIMAP---EGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        10 p~~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |.+...  +......   .++.+.|.|.+.|.|.|.++|+| ++..+.
T Consensus         2 P~f~~~--P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~   46 (93)
T cd05849           2 PVFEEQ--PIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDID   46 (93)
T ss_pred             CEEEEC--CCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEcc
Confidence            555555  3333332   24579999999999999999999 676664

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.17  E-value=1.2e-10  Score=56.13  Aligned_cols=49  Identities=24%  Similarity=0.568  Sum_probs=35.7

Q ss_pred             EEcCCEEeecCCCceEEe--cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           6 VVVPPDILNEESSSDIMA--PEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      |.++|.+...+....+..  ..|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~   51 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDL   51 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence            456787766532223332  356889999999999999999999 7877653

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.16  E-value=1.2e-10  Score=53.56  Aligned_cols=36  Identities=28%  Similarity=0.601  Sum_probs=31.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~   54 (69)
                      +.+..+..|+.+.|.|.+.|.|.| .+.|++ +|..+.
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~   41 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLG   41 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECC
Confidence            566788899999999999999999 799999 777664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.15  E-value=6.4e-10  Score=51.41  Aligned_cols=46  Identities=26%  Similarity=0.676  Sum_probs=39.0

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      |.|...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..+.+
T Consensus         1 P~~~~~--~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~   46 (90)
T PF07679_consen    1 PVFTKK--PKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQR   46 (90)
T ss_dssp             EEEEEE--SSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSS
T ss_pred             CEEEEe--cCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeee
Confidence            566666  677889999999999999999999999999 7888776443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.12  E-value=2.2e-10  Score=51.60  Aligned_cols=31  Identities=39%  Similarity=1.070  Sum_probs=26.8

Q ss_pred             CCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +|+.+.|.|.+.|.|.|.+.|+| ++..+..+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~   31 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVD   31 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEE-CCEECCCC
Confidence            58899999999999999999999 77766543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.11  E-value=7.2e-10  Score=51.38  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=30.7

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++ +++.+..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~   38 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTE   38 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECcc
Confidence            4667889999999999999999999999 7777754

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.10  E-value=5.1e-10  Score=52.54  Aligned_cols=37  Identities=46%  Similarity=0.884  Sum_probs=31.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +......+|+.+.|.|.+.|.|.|.+.|+| ++..+..
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~   42 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNL   42 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECcc
Confidence            555667789999999999999999999999 7777653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.09  E-value=4.5e-10  Score=50.91  Aligned_cols=28  Identities=39%  Similarity=0.884  Sum_probs=25.3

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |+.+.|.|.+.|.|.|.++|++ +|+.+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~   28 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLT-NGVPIE   28 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEE-CCEEcc
Confidence            5789999999999999999999 787764

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.08  E-value=6.1e-10  Score=51.42  Aligned_cols=37  Identities=38%  Similarity=0.716  Sum_probs=32.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~   42 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLAS   42 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCC
Confidence            666788899999999999999999999999 7776643

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.07  E-value=8.4e-10  Score=52.63  Aligned_cols=39  Identities=28%  Similarity=0.558  Sum_probs=33.3

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ...+.+..|+.+.|.|.+.| .|.|.+.|+| ||..+....
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~   49 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKL   49 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCc
Confidence            44677889999999999999 9999999999 888876443

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.07  E-value=4.6e-10  Score=50.90  Aligned_cols=30  Identities=30%  Similarity=0.702  Sum_probs=24.4

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEecCCc
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIIIKEGN   59 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~   59 (69)
                      +.|.|.+.|.|.|.+.|+| +++.+....++
T Consensus         1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~r   30 (75)
T cd05892           1 VKLECQISAIPPPKIFWKR-NNEMVQYNTDR   30 (75)
T ss_pred             CEEEEEEEecCCCeEEEEE-CCEECcCCCCe
Confidence            4799999999999999999 78777644333

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.06  E-value=1e-09  Score=51.74  Aligned_cols=42  Identities=31%  Similarity=0.562  Sum_probs=32.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.+...  +.......|+.+.|.|.+.|.|.|.++|++ ++..+
T Consensus         2 ~p~i~~~--~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~   43 (97)
T cd05869           2 KPKITYV--ENQTAMELEEQITLTCEASGDPIPSITWRT-STRNI   43 (97)
T ss_pred             CceEEEc--cCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccc
Confidence            5777654  444455568999999999999999999999 55544

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.05  E-value=1.3e-09  Score=50.45  Aligned_cols=40  Identities=30%  Similarity=0.514  Sum_probs=32.2

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      |.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..
T Consensus         2 ~~~~~~--p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k-~~~~   41 (88)
T cd04968           2 SIIVVF--PKDTYALKGQNVTLECFALGNPVPQIKWRK-VDGS   41 (88)
T ss_pred             CcEEEC--CCceEEeCCCcEEEEEEeeEeCCCEEEEEE-CCCc
Confidence            444444  666778899999999999999999999999 4443

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.04  E-value=6e-10  Score=49.73  Aligned_cols=28  Identities=39%  Similarity=0.972  Sum_probs=24.4

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |+.+.|.|.+.|.|.|.+.|+| +++.+.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~   28 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT   28 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence            5789999999999999999999 666553

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.01  E-value=1.1e-09  Score=49.59  Aligned_cols=27  Identities=30%  Similarity=0.895  Sum_probs=22.7

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|.+.|.|.|.+.|+| ++..+...
T Consensus         1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~   27 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKK-ENESLTHN   27 (75)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECCCC
Confidence            4799999999999999999 67666543

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.01  E-value=1.6e-09  Score=50.39  Aligned_cols=36  Identities=33%  Similarity=0.683  Sum_probs=30.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~   42 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVI   42 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEcc
Confidence            445558899999999999999999999999 666553

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.01  E-value=1.3e-09  Score=49.08  Aligned_cols=30  Identities=27%  Similarity=0.791  Sum_probs=25.4

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      |+.+.|.|.+.|.|.|.+.|+| ++..+...
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~   30 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNN   30 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEe-CCEecccC
Confidence            6789999999999999999999 67665433

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.01  E-value=1.6e-09  Score=48.97  Aligned_cols=28  Identities=43%  Similarity=0.898  Sum_probs=25.0

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |+.+.|.|.+.|.|.|.++|++ +|..+.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~   28 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSI-NGAPIE   28 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEE-CCEECC
Confidence            6789999999999999999999 787664

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.00  E-value=1.5e-09  Score=51.29  Aligned_cols=38  Identities=45%  Similarity=0.806  Sum_probs=32.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ++|++..   +.+..+.+|+.++|.|.+.|.|.|.+.|++.
T Consensus         1 ~~p~i~~---~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~   38 (98)
T cd05870           1 VQPHIIQ---LKNETTVENGAATLSCKAEGEPIPEITWKRA   38 (98)
T ss_pred             CCCEEEe---eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence            4677764   4567888999999999999999999999984

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>KOG3513|consensus

Probab=99.00  E-value=1.7e-09  Score=67.14  Aligned_cols=52  Identities=33%  Similarity=0.668  Sum_probs=46.5

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ++|.|+++|.++..  +.+.....|+++.+.|.|.|.|.|.++|++ +|.++...
T Consensus       324 ~~v~v~a~P~w~~~--~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~  375 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQK--PQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPA  375 (1051)
T ss_pred             EEEEEecCchhhcc--cceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCcc
Confidence            57889999999886  888888999999999999999999999999 88877643

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.99  E-value=6e-09  Score=48.79  Aligned_cols=37  Identities=30%  Similarity=0.661  Sum_probs=31.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~   44 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIEL   44 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCC
Confidence            556788899999999999999999999999 6655543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.99  E-value=2.5e-09  Score=47.84  Aligned_cols=27  Identities=26%  Similarity=0.788  Sum_probs=22.8

Q ss_pred             eEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          28 TIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        28 ~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ++.|.|.+.|.|.|.++|+| ++..+..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~   27 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVK-NGDMVIP   27 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEE-CCeECCC
Confidence            47899999999999999999 6666543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.99  E-value=4.5e-09  Score=49.62  Aligned_cols=43  Identities=26%  Similarity=0.409  Sum_probs=34.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~   55 (69)
                      ||.+..   +....+..|+.+.|.|.+.|.|.| .+.|++ ++..+..
T Consensus         2 pp~i~~---~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~   45 (98)
T cd05758           2 PPIITS---EATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELES   45 (98)
T ss_pred             CCeEcC---CCcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccC
Confidence            566643   345567889999999999999999 699999 7766654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.97  E-value=3.8e-09  Score=47.98  Aligned_cols=28  Identities=32%  Similarity=0.744  Sum_probs=24.1

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~   28 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRL-NWGHVP   28 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEE-CCeECC
Confidence            6789999999999999999999 655544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.96  E-value=7.2e-09  Score=48.98  Aligned_cols=38  Identities=18%  Similarity=0.412  Sum_probs=30.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~   55 (69)
                      +....+..|+.+.|.|.+.|.|. |.+.|+++++..+..
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~   45 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP   45 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence            44456778999999999999995 799999856665543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.95  E-value=6e-09  Score=48.57  Aligned_cols=41  Identities=32%  Similarity=0.720  Sum_probs=30.2

Q ss_pred             CEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          10 PDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        10 p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      |.+...  +.....   ..++.+.|.|.+.|.|.|.++|++ +++.+
T Consensus         2 P~f~~~--p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l   45 (91)
T cd04967           2 PVFEEQ--PDDTIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEI   45 (91)
T ss_pred             CeeEeC--CCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEEC
Confidence            455555  333332   344679999999999999999999 77766

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=2.6e-09  Score=50.47  Aligned_cols=51  Identities=18%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             CceEEecCCCeEEEEee-EeeecCCeEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606          18 SSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~-~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      .+.+.+.+|..+.|.|. +.|.|.|.+.|++++...+.. .++..+..+|.||
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~   61 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLY   61 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEE
Confidence            45678899999999997 689999999999843333443 3344444445543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.94  E-value=3.5e-09  Score=49.63  Aligned_cols=41  Identities=37%  Similarity=0.631  Sum_probs=32.9

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +|.+..   ..+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus         2 ~P~i~~---~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~   42 (96)
T cd05732           2 QPKITY---LENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNF   42 (96)
T ss_pred             Ccccee---cCceeEecCCcEEEEEEEeEcCCCcEEEEE-CCccc
Confidence            567653   445677899999999999999999999999 55443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.93  E-value=2.8e-09  Score=48.17  Aligned_cols=27  Identities=26%  Similarity=0.791  Sum_probs=23.1

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|.+.|.|.|.+.|+| ++..+..+
T Consensus         1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~   27 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKK-NNEMLTYN   27 (75)
T ss_pred             CEEEEEEeecCCCeEEEEE-CCEECCCC
Confidence            4799999999999999999 77776543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.93  E-value=4.6e-09  Score=48.22  Aligned_cols=37  Identities=32%  Similarity=0.755  Sum_probs=31.1

Q ss_pred             CceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~   40 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNL   40 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCC
Confidence            456677899999999998 799999999999 7766554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>KOG4194|consensus

Probab=98.92  E-value=1.2e-09  Score=65.24  Aligned_cols=52  Identities=29%  Similarity=0.617  Sum_probs=45.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|+|...|.+...  +.+.....|....|.|.|+|.|.|++.|-|++|..++.
T Consensus       605 ~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA  656 (873)
T KOG4194|consen  605 AKLTVNQAPSFTKT--PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA  656 (873)
T ss_pred             eEEEeeccCccccC--cccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence            57899999999887  88899999999999999999999999999955554543

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.91  E-value=4.3e-09  Score=47.74  Aligned_cols=27  Identities=37%  Similarity=0.775  Sum_probs=22.8

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ++|.|.+.|.|.|.+.|+| +|..+...
T Consensus         1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~   27 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFR-DGTPLSDG   27 (77)
T ss_pred             CEEEEEeeecCCCcEEEEE-CCEECCCC
Confidence            4799999999999999999 77776443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.89  E-value=9.2e-09  Score=49.02  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ...+..+..+.|.|.+.|+|.|.+.|+| ++..+..+
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~   47 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIEN   47 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCC
Confidence            4566778999999999999999999999 88887643

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.88  E-value=9.1e-09  Score=46.26  Aligned_cols=29  Identities=45%  Similarity=0.836  Sum_probs=25.1

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~   29 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRL-NGVPIEE   29 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEE-CCEECCC
Confidence            6789999999999999999999 7766643

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.88  E-value=8.9e-09  Score=46.16  Aligned_cols=29  Identities=31%  Similarity=0.793  Sum_probs=25.0

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      |+.+.|.|.+.|.|.|.++|++ ++..+..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~   29 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSK-GTELLTN   29 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEE-CCEEccc
Confidence            6789999999999999999999 6766543

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.88  E-value=1e-08  Score=47.95  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=33.6

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      |.+...+.+..+.+.+|+.++|.|.+.|. .|.+.|++ ++..+
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l   43 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLL   43 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEEC
Confidence            55544434556788899999999999999 99999999 66654

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.87  E-value=3.5e-09  Score=48.03  Aligned_cols=25  Identities=40%  Similarity=0.917  Sum_probs=21.8

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.|.|.|.++|+| ++..+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k-~g~~l~   25 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTR-NGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECC
Confidence            4789999999999999999 777664

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.87  E-value=5e-09  Score=47.63  Aligned_cols=24  Identities=42%  Similarity=0.924  Sum_probs=21.1

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.|.|.+.|.|.|.++|++ ++..+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~   24 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFF   24 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEc
Confidence            4689999999999999999 77654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.86  E-value=8.7e-09  Score=46.39  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=21.5

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ++|.|.+.|.|.|.+.|++ ++..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k-~~~~~~   25 (74)
T cd05738           1 ATMLCAASGNPDPEITWFK-DFLPVD   25 (74)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECc
Confidence            4789999999999999999 676654

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.86  E-value=5.9e-09  Score=47.84  Aligned_cols=34  Identities=32%  Similarity=0.738  Sum_probs=29.1

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..+..|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~   37 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQ   37 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCC
Confidence            456789999999999999999999999 7766543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.85  E-value=5.2e-09  Score=47.57  Aligned_cols=24  Identities=42%  Similarity=1.002  Sum_probs=21.2

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.|.|.+.|.|.|+++|++ ++..+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l   24 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHF   24 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeEC
Confidence            4789999999999999999 77665

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.85  E-value=9.2e-09  Score=45.74  Aligned_cols=25  Identities=40%  Similarity=0.832  Sum_probs=22.4

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.|.|.|.+.|+| +|+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~   25 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYK-DGKLIS   25 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEE-CCEECc
Confidence            4789999999999999999 888775

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.83  E-value=1.7e-08  Score=45.31  Aligned_cols=27  Identities=30%  Similarity=0.815  Sum_probs=22.9

Q ss_pred             eEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          28 TIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        28 ~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~   27 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSK-DGKPLKL   27 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEE-CCEEcCC
Confidence            36899999999999999999 7776643

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.81  E-value=4.9e-08  Score=44.53  Aligned_cols=39  Identities=15%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~~~   57 (69)
                      +....+.+|+.++|.|.+.|.|.+ .+.|++ ++..+....
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~~~   46 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLETTT   46 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEeeccC
Confidence            555667799999999999998864 699999 787774333

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.81  E-value=7.9e-08  Score=45.14  Aligned_cols=37  Identities=27%  Similarity=0.524  Sum_probs=30.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.+..+..|+.+.|.|.+.|.|. .+.|+++++..+..
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~   43 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS   43 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC
Confidence            45567889999999999999998 89999866666543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.79  E-value=2.4e-08  Score=46.39  Aligned_cols=30  Identities=20%  Similarity=0.459  Sum_probs=25.6

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~   30 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPE   30 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEee-CCEECCCC
Confidence            6789999999999999999999 77666443

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.78  E-value=1.1e-08  Score=45.45  Aligned_cols=26  Identities=38%  Similarity=0.970  Sum_probs=22.1

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.|.|.|.+.|+| ++..+..
T Consensus         1 v~L~C~~~g~P~p~i~W~k-~g~~~~~   26 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNK-DGVQVTE   26 (69)
T ss_pred             CEeEecceEeCCCEEEEEE-CCEECCC
Confidence            4799999999999999999 7766543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.78  E-value=1.8e-07  Score=43.79  Aligned_cols=37  Identities=22%  Similarity=0.500  Sum_probs=29.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +....+..|+.+.|.|.+.|.| |.+.|++++++.+..
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~   43 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT   43 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc
Confidence            4456778899999999999997 599999866666544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>KOG4221|consensus

Probab=98.78  E-value=2e-08  Score=63.27  Aligned_cols=61  Identities=23%  Similarity=0.492  Sum_probs=49.5

Q ss_pred             CeeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEeCC
Q psy4606           1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS   65 (69)
Q Consensus         1 ~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~   65 (69)
                      .|.|+|+++|.+...  +..+...++.++.|.|.+.|.|.|.+.|+| +|..+.. ++++.+..+
T Consensus       320 saev~V~a~P~~~~~--p~~l~A~e~~die~ec~~~g~p~p~v~w~k-Ngd~~ip-sdy~ki~~~  380 (1381)
T KOG4221|consen  320 SAEVTVLAPPGFTKA--PTTLVAHESMDIEFECPVSGKPIPTVRWYK-NGDRIIP-SDYFKIVGG  380 (1381)
T ss_pred             ceEEEEEcCCCCCCC--CcceeeeeccceeEeCCCCCCCcceEEEEe-cCcccCc-ccceEecCC
Confidence            378999999999877  777888889999999999999999999999 7766654 444444433

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.76  E-value=1.8e-08  Score=45.41  Aligned_cols=26  Identities=31%  Similarity=0.669  Sum_probs=22.2

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.|.|.|.+.|+| ++..+..
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~   26 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLK-DGLPAAE   26 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEE-CCEECCC
Confidence            3689999999999999999 7777654

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.76  E-value=1.9e-08  Score=45.67  Aligned_cols=32  Identities=44%  Similarity=0.968  Sum_probs=27.2

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +....|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~   35 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLK-DNKPL   35 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEE-CCcCC
Confidence            445679999999999999999999999 66554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.72  E-value=7.9e-08  Score=44.76  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM   61 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~   61 (69)
                      +....+..|+.+.|.|.+.+ |.|.+.|++ +|+.+..+..++.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~~r~~   44 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPESAKYL   44 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCCceEE
Confidence            55677889999999999865 789999999 8888765533333

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.71  E-value=7.9e-08  Score=43.05  Aligned_cols=29  Identities=45%  Similarity=0.832  Sum_probs=24.6

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |+.+.|.|.+.|.|.|.+.|++.++..+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~   29 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS   29 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence            67899999999999999999975666554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.71  E-value=1.3e-07  Score=47.21  Aligned_cols=46  Identities=24%  Similarity=0.492  Sum_probs=34.8

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC-CeEEEEeCCC
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR-PHITWKREDG   50 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~   50 (69)
                      .+|.|..+|.+...  +.......|..+.|.|.+.| +|. +.+.|++ ++
T Consensus        31 ~~l~v~~~P~v~~~--~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~-~g   78 (139)
T cd05771          31 IQLSVSEPPRVRLS--LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR-EP   78 (139)
T ss_pred             EEEEEecCCceEEe--CCCceeecCCcEEEEEEECCCCCCCeEEEEEE-CC
Confidence            36788899988665  43444447889999999999 575 4899999 54

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.70  E-value=2.7e-08  Score=44.56  Aligned_cols=26  Identities=38%  Similarity=0.921  Sum_probs=22.4

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.|.|.|.+.|+| +++.+..
T Consensus         1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~   26 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYK-NGQLIVL   26 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence            3689999999999999999 7877653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.67  E-value=6.3e-08  Score=45.84  Aligned_cols=50  Identities=14%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             ceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEE--EecCCcEEEeCCCCCC
Q psy4606          19 SDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI--IIKEGNTMVPKSKDIF   69 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~--~~~~~~~~~~~~~~l~   69 (69)
                      ....+.+|..+.|.|.. .|.|.|.+.|++ ++..+  ..+.++.+...+|.||
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~~~~~d~r~~~~~~~G~L~   63 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPNFIPEDGRRFVSQTNGNLY   63 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCcccccccCCCeEEeCCCCcEE
Confidence            34567889999999977 579999999999 66543  2233334444456553

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.66  E-value=2.6e-07  Score=43.60  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=28.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ..+..+..|+.+.|.|.+.|.|.|.+.|+++++
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~   36 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQ   36 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCc
Confidence            456788899999999999999999999998443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>KOG3513|consensus

Probab=98.66  E-value=1.1e-07  Score=59.43  Aligned_cols=65  Identities=23%  Similarity=0.549  Sum_probs=47.9

Q ss_pred             eeEEEEc-CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEeCCCCC
Q psy4606           2 GYLDVVV-PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI   68 (69)
Q Consensus         2 ~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~~~l   68 (69)
                      |+|.|+. +|.+...+......+..|+.+.+.|.+.|.|+|.+.|.| +++.+. .++++.+..+++|
T Consensus       416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k-~~~~~~-~~~r~~i~edGtL  481 (1051)
T KOG3513|consen  416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK-GGEKLL-QSGRIRILEDGTL  481 (1051)
T ss_pred             eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc-CCcccc-cCceEEECCCCcE
Confidence            7899984 477766644455678889999999999999999999999 666433 3445555555543

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.65  E-value=4e-08  Score=43.93  Aligned_cols=26  Identities=38%  Similarity=0.811  Sum_probs=22.4

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.|.|.|.+.|+| +|+.+..
T Consensus         1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~   26 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYK-NGKLISE   26 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence            4689999999999999999 7877643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.63  E-value=1.9e-07  Score=43.21  Aligned_cols=27  Identities=44%  Similarity=1.047  Sum_probs=22.1

Q ss_pred             CCeEEEEeeEee-ecCCeEEEEeCCCcEE
Q psy4606          26 GGTIKLVCKAKG-YPRPHITWKREDGQEI   53 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P~~~W~~~~~~~~   53 (69)
                      +..+.+.|.+.| +|.|.++|+. ++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~-~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYL-DGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEE-TTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEE-CCCce
Confidence            789999998876 9999999999 56555

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.62  E-value=1e-07  Score=43.77  Aligned_cols=26  Identities=23%  Similarity=0.580  Sum_probs=22.4

Q ss_pred             EEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          30 KLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        30 ~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+.|.+.|.|.|.++|+| +|+.+...
T Consensus         2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~   27 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYH-NGAVLNES   27 (81)
T ss_pred             eEEEEeEeeCCCcEEEEE-CCEECcCC
Confidence            478999999999999999 88877544

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.62  E-value=1.2e-07  Score=43.13  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=28.5

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ...+.+|+.+.|.|.+.|. .|.+.|+| +|..+..+
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~   37 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN   37 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC
Confidence            4567789999999999996 67899999 78776543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.61  E-value=5e-08  Score=43.54  Aligned_cols=24  Identities=33%  Similarity=0.805  Sum_probs=20.2

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.|.|.+.|.|.|.+.|++ ++..+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k-~~~~~   24 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDR-IDGPL   24 (71)
T ss_pred             CEEEEEeeEecCCeEEEEE-CCcCC
Confidence            4689999999999999999 55444

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.61  E-value=6.8e-08  Score=43.44  Aligned_cols=22  Identities=45%  Similarity=1.082  Sum_probs=19.1

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCc
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      +.|.|.+.|.|.|.++|+| ++.
T Consensus         1 a~l~C~~~G~P~P~v~W~k-~~~   22 (75)
T cd05763           1 ARLECAATGHPTPQIAWQK-DGG   22 (75)
T ss_pred             CEeEeecccccCCEEEEEe-CCC
Confidence            3689999999999999999 443

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.60  E-value=2e-07  Score=43.89  Aligned_cols=32  Identities=22%  Similarity=0.589  Sum_probs=28.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRED   49 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~   49 (69)
                      ..++.+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~   35 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA   35 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCC
Confidence            56788999999999999999999999998743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.60  E-value=7.7e-08  Score=44.80  Aligned_cols=23  Identities=30%  Similarity=0.814  Sum_probs=21.2

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |+.++|.|.+.|.|.|.++|+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~   23 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEe
Confidence            57899999999999999999983

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.59  E-value=1.4e-07  Score=43.81  Aligned_cols=23  Identities=43%  Similarity=1.041  Sum_probs=21.3

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |+.+.|.|.+.|.|.|.+.|+++
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~   23 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKE   23 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeC
Confidence            67899999999999999999994

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.59  E-value=9.2e-08  Score=43.80  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             EEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          30 KLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        30 ~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+.|.+.|+|.|.++|+| +|+.+..
T Consensus         2 ~i~~~v~G~P~Pti~W~k-ng~~l~~   26 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFH-EGAILNE   26 (79)
T ss_pred             eEEEEEeEeCCCceEEEE-CCEECCC
Confidence            478999999999999999 8887753

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.56  E-value=1.7e-07  Score=42.57  Aligned_cols=22  Identities=50%  Similarity=1.179  Sum_probs=19.1

Q ss_pred             EEEEeeEeeecCCeEEEEeCCC
Q psy4606          29 IKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ++|.|.+.|.|.|.+.|++.++
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~   22 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKG   22 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCC
Confidence            4799999999999999999433

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.56  E-value=1.8e-07  Score=42.12  Aligned_cols=25  Identities=40%  Similarity=0.939  Sum_probs=21.2

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.|.|.|.+.|+| ++..+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k-~~~~l~   25 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLK-NGMDIT   25 (76)
T ss_pred             CEeEeEeeecCCCEEEEEE-CCEECC
Confidence            3689999999999999999 666654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.52  E-value=3.3e-07  Score=41.85  Aligned_cols=25  Identities=40%  Similarity=0.862  Sum_probs=21.5

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.| .|.|.++|++ +++.+.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~   27 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLD   27 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEcc
Confidence            579999998 7999999999 787654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>KOG4221|consensus

Probab=98.51  E-value=7.5e-07  Score=56.63  Aligned_cols=39  Identities=31%  Similarity=0.757  Sum_probs=35.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +....+.+|+.+.|.|.+.|.|+|++.|.+ +|+.+..++
T Consensus       244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds  282 (1381)
T KOG4221|consen  244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS  282 (1381)
T ss_pred             CCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc
Confidence            666778899999999999999999999999 899888776

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.50  E-value=6.4e-07  Score=43.45  Aligned_cols=31  Identities=32%  Similarity=0.804  Sum_probs=25.4

Q ss_pred             ecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606          23 APEGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      ...|+.++|.|.+.| +|. -.++|++ ||+.+.
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~   50 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS   50 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence            346778999999999 886 5899999 887764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.50  E-value=2.4e-07  Score=43.07  Aligned_cols=22  Identities=41%  Similarity=0.964  Sum_probs=20.8

Q ss_pred             CCeEEEEeeEeeecCCeEEEEe
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      |+.+.|.|.+.|.|.|.+.|++
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k   22 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLK   22 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEE
Confidence            6789999999999999999998

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.49  E-value=2.1e-07  Score=41.16  Aligned_cols=24  Identities=42%  Similarity=0.920  Sum_probs=20.2

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.|.|.+.|.|.|.+.|++ ++..+
T Consensus         1 v~l~C~~~g~P~p~v~W~k-~~~~~   24 (71)
T cd05731           1 LLLECIAEGLPTPEISWIK-IGGEL   24 (71)
T ss_pred             CEEEEEeeEecCCeEEEEE-CCeEC
Confidence            4789999999999999999 55443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.46  E-value=2.2e-07  Score=42.10  Aligned_cols=23  Identities=39%  Similarity=0.950  Sum_probs=21.2

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |+.+.|.|.+.|.|.|.+.|+|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~   23 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQ   23 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEec
Confidence            67899999999999999999984

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.46  E-value=1.2e-06  Score=40.56  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +..+.+..|+.+.|.|.+.+ |.|.+.|++ ++..+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~   36 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPL   36 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCccc
Confidence            45567788999999999988 889999999 55444

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.45  E-value=4.3e-07  Score=41.83  Aligned_cols=26  Identities=35%  Similarity=0.718  Sum_probs=21.9

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.| +|.+.++|++ +|+.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRK-GDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEE-CCEECCC
Confidence            679999998 7999999999 7776543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.45  E-value=4e-07  Score=41.98  Aligned_cols=25  Identities=36%  Similarity=0.830  Sum_probs=21.6

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.| +|...++|++ +|+.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~k-ng~~l~   27 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFK-NDKEIK   27 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEE-CCEECc
Confidence            679999998 9999999999 777754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.44  E-value=1.4e-06  Score=39.62  Aligned_cols=33  Identities=45%  Similarity=0.940  Sum_probs=27.7

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+..|..+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~   36 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFK   36 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECc
Confidence            456679999999999999999999999 665543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.42  E-value=6.3e-07  Score=41.10  Aligned_cols=25  Identities=28%  Similarity=0.747  Sum_probs=21.4

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.| +|.+.++|++ +++.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFK-GDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence            689999987 7999999999 777764

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.42  E-value=2.8e-07  Score=41.17  Aligned_cols=26  Identities=35%  Similarity=0.784  Sum_probs=22.1

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.| .|.|.+.|++ +++.+..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~   27 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFK-DGKELNR   27 (75)
T ss_pred             CEEEEEccCCCCCceEEEEc-CCeeccc
Confidence            468999999 9999999999 7776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.41  E-value=2.6e-06  Score=39.93  Aligned_cols=25  Identities=52%  Similarity=1.205  Sum_probs=21.2

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQ   51 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~   51 (69)
                      ++.+.|.|.+.| +|.+ .++|.+ +++
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~   40 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLR-DGE   40 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence            678999999999 6776 899999 664

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.40  E-value=7.9e-07  Score=41.05  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=23.0

Q ss_pred             CeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606          27 GTIKLVCKAKGYPRP--HITWKREDGQEIII   55 (69)
Q Consensus        27 ~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~   55 (69)
                      +++.|.|.+.|.|.|  .+.|++ +++.+..
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~   30 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDL   30 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEE-CCeEccc
Confidence            368999999999988  579999 7877643

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG4222|consensus

Probab=98.40  E-value=5.3e-07  Score=56.95  Aligned_cols=50  Identities=30%  Similarity=0.634  Sum_probs=43.6

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      |.|+|+++|.+...  +....+..|..++|.|++.|.|.|.+.|.+.++..+
T Consensus       308 a~ltV~apP~f~kk--p~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~l  357 (1281)
T KOG4222|consen  308 ATLTVQAPPSFGKK--PRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDL  357 (1281)
T ss_pred             cceEEecCcccccc--cCccccccCceEEeeeecCCCCCcceEEeccCccee
Confidence            67999999999887  666778889999999999999999999999655554

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.39  E-value=9.9e-07  Score=41.10  Aligned_cols=31  Identities=35%  Similarity=0.848  Sum_probs=25.1

Q ss_pred             cCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEEe
Q psy4606          24 PEGGTIKLVCKAKGY-PR-PHITWKREDGQEIII   55 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~~   55 (69)
                      ..|+.+.|.|.+.|. |. ..++|++ +|..+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~   43 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTS   43 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCC
Confidence            358899999999995 74 6899999 7777643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.35  E-value=4.2e-07  Score=40.19  Aligned_cols=24  Identities=25%  Similarity=0.872  Sum_probs=20.0

Q ss_pred             EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.|.|.+.|.|.|.+.|++ ++..+
T Consensus         1 v~l~C~~~g~P~p~v~W~k-~~~~~   24 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRK-EDGEL   24 (69)
T ss_pred             CEEEEECccCCCCEEEEEE-CCccC
Confidence            4789999999999999999 44433

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.34  E-value=4.7e-06  Score=39.62  Aligned_cols=44  Identities=25%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~   55 (69)
                      .||.+..   .....+.+|+.+.|.|.+.+.|.|. +.|.. ++..+..
T Consensus         1 gpP~i~~---~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~   45 (98)
T cd05898           1 GPPIISS---EQVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLES   45 (98)
T ss_pred             CCCEEec---CceEEEeCCCcEEEEEEEccCCCCcEEEEEE-ccccccC
Confidence            3676643   4556788999999999999999985 57877 4555543

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.32  E-value=2e-06  Score=39.49  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606          27 GTIKLVCKAKGYPRP--HITWKREDGQEIII   55 (69)
Q Consensus        27 ~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~   55 (69)
                      +.+.|.|.+.|.|.|  .+.|++ +|..+..
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~   30 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDF   30 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEE-CCeEeec
Confidence            368999999999998  568999 7877653

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.31  E-value=3.1e-06  Score=39.61  Aligned_cols=33  Identities=27%  Similarity=0.632  Sum_probs=28.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ...+.+.+|+.+.|.|.+.+.|.|.+.|+++++
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~   36 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQ   36 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCC
Confidence            556788899999999999999999999987444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.31  E-value=1.6e-06  Score=40.82  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=26.9

Q ss_pred             eEEecCCCeEEEEeeEee-----ecCCeEEEEeCCCcE
Q psy4606          20 DIMAPEGGTIKLVCKAKG-----YPRPHITWKREDGQE   52 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g-----~P~P~~~W~~~~~~~   52 (69)
                      ...+.+|+.+.|.|.+.|     .|.|.+.|+| ++..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk-~~~~   44 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYK-SDGK   44 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEE-cCCC
Confidence            455678999999999999     6999999999 5544

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.30  E-value=5.7e-06  Score=46.61  Aligned_cols=36  Identities=14%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecC---CeEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPR---PHITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~---P~~~W~~~~~~~~~   54 (69)
                      +....+..|+.+.|.|.|.|.|.   |.+.|++ +|..+.
T Consensus       227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~  265 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYE  265 (326)
T ss_pred             CCcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECC
Confidence            45667778999999999999887   4899999 787664

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.30  E-value=4.3e-06  Score=39.38  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=23.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|...+|.|.|.| +|.. .++|.+ ||+.+.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~   44 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP   44 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence            4666799999999 7765 689999 887765

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.30  E-value=7.8e-06  Score=36.52  Aligned_cols=35  Identities=29%  Similarity=0.702  Sum_probs=29.7

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..+..|+.+.|.|.+.|.|.+.+.|++ ++..+...
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~   43 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSS   43 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeee
Confidence            446789999999999999999999999 77777643

...

>KOG4222|consensus

Probab=98.28  E-value=8.5e-07  Score=56.08  Aligned_cols=49  Identities=24%  Similarity=0.551  Sum_probs=43.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      |.|.|+++|.+...  +....+..|..+.+.|.+.|.|.|.+.|.+ ++..+
T Consensus       218 A~lsv~e~P~f~~r--p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~  266 (1281)
T KOG4222|consen  218 ARLSVQEKPWFWKR--PKDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSL  266 (1281)
T ss_pred             ceeeeccCCccccc--cccceeecccccccccccCCCCCCceeeec-cCCCC
Confidence            78999999999887  778888889999999999999999999998 44444

>KOG4194|consensus

Probab=98.27  E-value=1.7e-06  Score=52.37  Aligned_cols=52  Identities=29%  Similarity=0.547  Sum_probs=42.7

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~~   56 (69)
                      |.|.|...|.+...  ..+..+..|..+.|.|.+.|.|. |.+.|+| +.+++...
T Consensus       699 AtL~V~e~p~f~~P--L~~~~V~~get~vlqC~a~~~~a~pr~~W~k-~d~pil~t  751 (873)
T KOG4194|consen  699 ATLTVLETPSFSIP--LEDQLVVVGETLVLQCLAEGAPADPRLEWFK-EDKPILIT  751 (873)
T ss_pred             eEEEEecCCccccc--ccceEEEecceEEEEEecCCCCCCccccccC-CCCceEEe
Confidence            78999999988765  56677788999999999999887 9999999 55565433

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.25  E-value=5.4e-06  Score=44.70  Aligned_cols=35  Identities=20%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             EEecCCCeEEEEeeEe-----eecCCeEEEEeCCCcEEEec
Q psy4606          21 IMAPEGGTIKLVCKAK-----GYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~-----g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ....+|+.+.|.|.+.     |.|.|.++|+| +++.+..+
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~  178 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYT  178 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCC
Confidence            4566899999999986     34689999999 88877543

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.24  E-value=1.5e-06  Score=39.94  Aligned_cols=26  Identities=27%  Similarity=0.653  Sum_probs=22.3

Q ss_pred             eEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          28 TIKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        28 ~~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      .+.|.|.+.| +|.|.++|++ +++.+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k-~~~~l~   27 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYR-DRKELK   27 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEE-CCEECC
Confidence            3689999976 9999999999 788774

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.22  E-value=1.1e-05  Score=38.06  Aligned_cols=29  Identities=24%  Similarity=0.662  Sum_probs=23.0

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+...+|.|.|.| +|.. .++|.+ +|+.+.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~   44 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVT   44 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEE-CCeEcc
Confidence            3556799999999 8865 689999 787754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.22  E-value=6.1e-06  Score=38.88  Aligned_cols=30  Identities=33%  Similarity=0.604  Sum_probs=24.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      .+..++|.|.+.| +|.. .++|++ +|+.+..
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~   44 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE   44 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence            5788999999999 8877 789999 7776543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.17  E-value=6.8e-06  Score=37.66  Aligned_cols=33  Identities=24%  Similarity=0.579  Sum_probs=27.5

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~   51 (69)
                      +....+..|+.++|.|.+.+ .|.|.+.|++ ++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~   41 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTR-VGG   41 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEE-CCC
Confidence            55567788999999999975 8999999999 443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.14  E-value=7.7e-06  Score=34.57  Aligned_cols=29  Identities=45%  Similarity=0.969  Sum_probs=24.1

Q ss_pred             CCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|+.+.|.|.+.+.|.+.+.|++ ++..+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~   29 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLP   29 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEE-CCEECC
Confidence            47889999999999999999999 565443

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.11  E-value=8.1e-06  Score=36.79  Aligned_cols=24  Identities=50%  Similarity=1.042  Sum_probs=19.8

Q ss_pred             EEEEeeEee-ecC-CeEEEEeCCCcEE
Q psy4606          29 IKLVCKAKG-YPR-PHITWKREDGQEI   53 (69)
Q Consensus        29 ~~l~C~~~g-~P~-P~~~W~~~~~~~~   53 (69)
                      ++|.|.|.| +|. ..++|++ +|+.+
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLR-NGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence            679999999 677 5899999 77753

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.09  E-value=1.1e-05  Score=39.35  Aligned_cols=29  Identities=38%  Similarity=0.850  Sum_probs=23.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++.++|.|.+.| +|.. .++|++ +++.+.
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~   47 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVT   47 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence            4567999999999 8876 789999 776654

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.08  E-value=6.5e-06  Score=37.98  Aligned_cols=26  Identities=31%  Similarity=0.586  Sum_probs=22.3

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.| .|.+.++|++ +++.+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~   28 (82)
T cd05883           2 IELNCTAMASKPAATIRWFK-GNKELTG   28 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEE-CCEECcC
Confidence            689999998 9999999999 7777653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.05  E-value=2e-05  Score=36.59  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=22.5

Q ss_pred             eEEEEeeEee--ecCCeEEEEeCCCcEEEe
Q psy4606          28 TIKLVCKAKG--YPRPHITWKREDGQEIII   55 (69)
Q Consensus        28 ~~~l~C~~~g--~P~P~~~W~~~~~~~~~~   55 (69)
                      .+.|.|.+.+  .+.+.+.|++ +|+.+..
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~   30 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSF-NGHLIDF   30 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEE-CCEECcc
Confidence            6889999987  5578899999 8888863

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.05  E-value=8.5e-06  Score=38.75  Aligned_cols=29  Identities=34%  Similarity=0.776  Sum_probs=23.5

Q ss_pred             CCCeEEEEeeEee-ec-CCeEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YP-RPHITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P-~P~~~W~~~~~~~~~   54 (69)
                      .++.+.|.|.+.| +| .-.+.|++ +|+.+.
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~   46 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKV-DGATVS   46 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence            4677999999999 88 45789999 777653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.03  E-value=2e-05  Score=37.63  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=26.5

Q ss_pred             EecCCCeEEEEeeEee-ecCCe--EEEEeCCCcEEE
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRPH--ITWKREDGQEII   54 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P~--~~W~~~~~~~~~   54 (69)
                      .+.+|..++|.|.+.| .|.+.  +.|++ +++.+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~   46 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLS   46 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcc
Confidence            3568999999999988 99997  69999 666653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.02  E-value=8.7e-05  Score=35.53  Aligned_cols=35  Identities=20%  Similarity=0.579  Sum_probs=29.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~   53 (69)
                      ...+.+.+|.++.|.|...++|+|+ +.|.+ ++..+
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l   45 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTL   45 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCccc
Confidence            4456789999999999999999998 99998 55544

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.01  E-value=4.2e-05  Score=36.08  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=24.3

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +.+..|+.++|.|.+.+.|.+.+.|++
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~   28 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKN   28 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEE
Confidence            356789999999999999999999997

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.01  E-value=1.1e-05  Score=36.91  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             CCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      |+.+.|.|.+.|.  |.|.+.|.++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~   25 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYP   25 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecC
Confidence            6789999999998  8899999873

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.97  E-value=2.3e-05  Score=35.87  Aligned_cols=29  Identities=38%  Similarity=1.024  Sum_probs=24.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .+.|++ ++..+.
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~   37 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLK-NGKEVT   37 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEE-TTEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEe-ccceee
Confidence            3789999999999 8877 689999 777654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.90  E-value=2.2e-05  Score=37.21  Aligned_cols=28  Identities=18%  Similarity=0.535  Sum_probs=22.3

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWRE-GNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence            466899999999 7865 579999 777654

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.88  E-value=3.2e-05  Score=35.56  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |+.+.|.|.+.|.|.|.+.|.++
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~   23 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYP   23 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEEC
Confidence            67899999999999999999973

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.87  E-value=1.4e-05  Score=35.88  Aligned_cols=25  Identities=32%  Similarity=0.756  Sum_probs=20.7

Q ss_pred             EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          29 IKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.+.+ .|.|.+.|++ +++.+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~   26 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFK-NGKEIG   26 (76)
T ss_pred             CEEEEecccCCCCCceEEEE-CCcccc
Confidence            468999975 7899999999 777764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.82  E-value=5.4e-05  Score=36.19  Aligned_cols=29  Identities=31%  Similarity=0.621  Sum_probs=23.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..++|.|.|.| +|.. .++|++ +|+.+.
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~   45 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS   45 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence            3578999999999 7766 579999 776653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.81  E-value=9.6e-05  Score=34.84  Aligned_cols=27  Identities=37%  Similarity=0.687  Sum_probs=22.1

Q ss_pred             CCeEEEEeeEee-ecC-CeEEEEeCCCcEE
Q psy4606          26 GGTIKLVCKAKG-YPR-PHITWKREDGQEI   53 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~   53 (69)
                      ...+.|.|.+.| +|. -.++|.+ +|..+
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~   42 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA   42 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence            456899999999 887 4689999 77765

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.74  E-value=0.0001  Score=33.82  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=26.0

Q ss_pred             EecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      .+.+|+.++|.|.+.+ .+.+.+.|+| ++..+.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~   42 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKK   42 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcc
Confidence            4678999999999864 7788999999 676553

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.74  E-value=7.4e-05  Score=32.22  Aligned_cols=23  Identities=30%  Similarity=0.884  Sum_probs=20.3

Q ss_pred             CCeEEEEeeE-eeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKA-KGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~-~g~P~P~~~W~~~   48 (69)
                      |+.+.|.|.+ .+.|.+.+.|.++
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~   24 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKN   24 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEET
T ss_pred             CCeEEEEeecCCCCCCcEEEEEEC
Confidence            6789999999 6688899999994

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00409 IG Immunoglobulin

Probab=97.74  E-value=0.00036  Score=30.86  Aligned_cols=34  Identities=29%  Similarity=0.806  Sum_probs=27.1

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ...+..|+.+.|.|.+.+.+.+.+.|++.+++.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v   36 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL   36 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence            3456789999999999999899999999424444

>smart00410 IG_like Immunoglobulin like

Probab=97.74  E-value=0.00036  Score=30.86  Aligned_cols=34  Identities=29%  Similarity=0.806  Sum_probs=27.1

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ...+..|+.+.|.|.+.+.+.+.+.|++.+++.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v   36 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL   36 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence            3456789999999999999899999999424444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.74  E-value=3.6e-05  Score=36.11  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             EEecCCCeEEEEeeEee-e----cCCeEEEEeCCCcEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKG-Y----PRPHITWKREDGQEIII   55 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g-~----P~P~~~W~~~~~~~~~~   55 (69)
                      ..+..|+...|.|...+ .    |.|.+.|+| +++.+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~   43 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEG   43 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCC
Confidence            45678999999998865 2    678999999 7877654

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.73  E-value=0.0002  Score=33.84  Aligned_cols=27  Identities=30%  Similarity=0.736  Sum_probs=21.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQE   52 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~   52 (69)
                      .++.++|.|.|.| +|.. .++|.+ +|+.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k-~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNS-GSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence            3567999999999 7865 578999 7775

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.63  E-value=0.00022  Score=33.76  Aligned_cols=29  Identities=28%  Similarity=0.623  Sum_probs=21.4

Q ss_pred             cCCCeEEEEeeEeee--cCC-eEEEEeCCCcE
Q psy4606          24 PEGGTIKLVCKAKGY--PRP-HITWKREDGQE   52 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~--P~P-~~~W~~~~~~~   52 (69)
                      ..++.++|.|.+.|.  |.. .++|.++++..
T Consensus        12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696          12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            347889999999998  543 57999933333

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.62  E-value=0.00013  Score=34.07  Aligned_cols=28  Identities=18%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .+...+|+.+.|.|.. +.|.|.+.|++.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq   32 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQ   32 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence            3457789999999996 589999999983

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.55  E-value=0.00034  Score=32.50  Aligned_cols=37  Identities=14%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ...+.+..|+.+.|.|...+. .+.+.|++ ++..+..+
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~   39 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQ   39 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCC
Confidence            345678899999999998774 66999999 77766543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.54  E-value=0.00016  Score=31.65  Aligned_cols=18  Identities=44%  Similarity=1.049  Sum_probs=16.8

Q ss_pred             EEEEeeEeeec-CCeEEEE
Q psy4606          29 IKLVCKAKGYP-RPHITWK   46 (69)
Q Consensus        29 ~~l~C~~~g~P-~P~~~W~   46 (69)
                      +.|.|.+.+.| .+.+.|+
T Consensus        18 ~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE
Confidence            99999999977 8899999

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.51  E-value=0.0013  Score=31.12  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      .+++.+.+|+.+.|.|.+.+.....+.|++.+.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~   36 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNR   36 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCC
Confidence            456788999999999999998778888987543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.51  E-value=0.00028  Score=33.34  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             cCCCeEEEEeeEe-eecCCeEEEEe
Q psy4606          24 PEGGTIKLVCKAK-GYPRPHITWKR   47 (69)
Q Consensus        24 ~~g~~~~l~C~~~-g~P~P~~~W~~   47 (69)
                      .......+.|.+. |+|.+.|+|++
T Consensus        13 ~~~~~~va~C~s~~gkP~a~ItW~~   37 (95)
T cd05719          13 GGEPVTVATCVSANGKPPATISWET   37 (95)
T ss_pred             CCCccEEEEEECCCCcCCCEEEEEe
Confidence            3455678999995 59999999998

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.46  E-value=0.00047  Score=33.01  Aligned_cols=30  Identities=17%  Similarity=0.489  Sum_probs=26.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+ +.+.+.|++.
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq   34 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ   34 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence            55678889999999999988 7889999984

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.35  E-value=0.00087  Score=32.32  Aligned_cols=31  Identities=26%  Similarity=0.615  Sum_probs=26.6

Q ss_pred             CceEEecCCCeEEEEeeEee--ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+  .+.+.+.|++.
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            55677889999999999987  78889999984

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.34  E-value=0.0007  Score=32.04  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             ecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          23 APEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      ........+.|.+.| +|.+.++|++.
T Consensus        12 ~~~~~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          12 AGTIPVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             cCCCccEEEEEEcCCCCCCcEEEEEcC
Confidence            344556899998874 99999999983

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.34  E-value=0.00073  Score=32.12  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|...+.+.+.+.|++.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~   35 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ   35 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence            5567788999999999999888889999983

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.29  E-value=0.0011  Score=31.51  Aligned_cols=31  Identities=16%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             CceEEecCCCeEEEEeeEeeec-CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.. ...+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            5566788999999999998765 678999973

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.15  E-value=0.00098  Score=31.83  Aligned_cols=26  Identities=31%  Similarity=0.663  Sum_probs=20.9

Q ss_pred             CCCeEEEEeeEee-e-cCC-eEEEEeCCCc
Q psy4606          25 EGGTIKLVCKAKG-Y-PRP-HITWKREDGQ   51 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~-P~P-~~~W~~~~~~   51 (69)
                      .+..++|.|.+.| + |.. .++|.+ +|.
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~-~g~   46 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTP-SGG   46 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEE-CCc
Confidence            5778999999999 6 754 688998 554

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.03  E-value=0.0012  Score=31.20  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=25.7

Q ss_pred             EEecCCCeEEEEeeE-ee----ecCCeEEEEeCCCcEEEec
Q psy4606          21 IMAPEGGTIKLVCKA-KG----YPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~-~g----~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..+..+....|.|.- .+    .+.|.++|+| |++.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~   44 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKD   44 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCC
Confidence            345678899999973 33    3678999999 78776533

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.83  E-value=0.003  Score=29.65  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=23.0

Q ss_pred             EecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGY-PRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~-P~P~~~W~~~   48 (69)
                      .+.+|+.++|.|...+. +...+.|++.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~   29 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ   29 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence            45689999999999986 7788999983

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.82  E-value=0.0053  Score=28.51  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      ..+..|++++|.|.+. .+...+.|++ +|..
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~   40 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYR-EGST   40 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEE-CCCC
Confidence            3567899999999875 6788899998 5543

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=96.50  E-value=0.0091  Score=27.49  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             CCeEEEEeeEeeecCC--eEEEEeCC
Q psy4606          26 GGTIKLVCKAKGYPRP--HITWKRED   49 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P--~~~W~~~~   49 (69)
                      |+.+.|.|.+.|.|.+  .+.|..++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~   26 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPG   26 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCC
Confidence            6789999999986654  67998744

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.39  E-value=0.017  Score=27.04  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |.+...  + ...+..|++++|.|...- +.-.+.|+|+
T Consensus         2 P~l~a~--p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~   36 (94)
T cd05711           2 PFLSAH--P-SPVVPSGENVTLQCHSDI-RFDRFILYKE   36 (94)
T ss_pred             CEEEec--C-CCccCCCCeEEEEEecCC-CCCEEEEEEC
Confidence            444443  2 345678999999998754 5567899994

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.39  E-value=0.0099  Score=28.33  Aligned_cols=28  Identities=29%  Similarity=0.687  Sum_probs=21.9

Q ss_pred             EEecCCCeEEE-EeeEe-eecCCeEEEEeC
Q psy4606          21 IMAPEGGTIKL-VCKAK-GYPRPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l-~C~~~-g~P~P~~~W~~~   48 (69)
                      ..+.+|..+.+ .|.+. |+|.+.++|+.+
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            44566777777 88885 599999999983

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=96.30  E-value=0.0097  Score=32.34  Aligned_cols=30  Identities=27%  Similarity=0.660  Sum_probs=24.6

Q ss_pred             ceEEecCCCeEEEEeeEeeecC-----------CeEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPR-----------PHITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~-----------P~~~W~~~   48 (69)
                      ....+.+|+.+.|.|.+.+.|+           +.+.|+|.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~   70 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT   70 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeC
Confidence            3467789999999999988664           48999994

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.27  E-value=0.0072  Score=28.29  Aligned_cols=27  Identities=15%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             EecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      .+.+|++++|.|...+.  ....+.|++.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q   30 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQ   30 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence            45689999999998775  5678999984

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.10  E-value=0.025  Score=27.28  Aligned_cols=31  Identities=19%  Similarity=0.488  Sum_probs=24.6

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      +..+.+..|..+.|.|.... .....+.|++.
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            55677889999999999875 35567899983

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02785 IL-beta-binding protein; Provisional

Probab=96.10  E-value=0.0062  Score=34.60  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=23.3

Q ss_pred             EecCCCeEEEEeeE-----eeecCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKA-----KGYPRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~-----~g~P~P~~~W~~~   48 (69)
                      ...+|..+.+.|.+     .|.|.|.++|+|.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~   68 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKR   68 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEEC
Confidence            35579999999997     6899999999993

>PHA03376 BARF1; Provisional

Probab=95.96  E-value=0.015  Score=31.17  Aligned_cols=25  Identities=24%  Similarity=0.828  Sum_probs=20.7

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      -+...+.|.+.|+|.|.++|..+.|
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CCeeEEEEecCCcCCchheeccccC
Confidence            5667899998889999999987444

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.95  E-value=0.022  Score=27.14  Aligned_cols=27  Identities=37%  Similarity=0.673  Sum_probs=21.5

Q ss_pred             EecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGY-PRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~-P~P~~~W~~~   48 (69)
                      .+..|+.++|.|...+. ....+.|++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq   29 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRW   29 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence            46789999999998774 3457999984

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=95.87  E-value=0.023  Score=26.63  Aligned_cols=32  Identities=13%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             EecCCCeEEEEeeEee--ecCCeEEEEeCCCcEE
Q psy4606          22 MAPEGGTIKLVCKAKG--YPRPHITWKREDGQEI   53 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g--~P~P~~~W~~~~~~~~   53 (69)
                      ....|++++|.|++..  .|.+.+.|..+.++.+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~   43 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK   43 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc
Confidence            4567999999999965  4555999998655433

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=95.85  E-value=0.029  Score=32.36  Aligned_cols=21  Identities=24%  Similarity=0.651  Sum_probs=17.7

Q ss_pred             eEEEEeeEee-ecCC-eEEEEeC
Q psy4606          28 TIKLVCKAKG-YPRP-HITWKRE   48 (69)
Q Consensus        28 ~~~l~C~~~g-~P~P-~~~W~~~   48 (69)
                      .++|.|.|.| +|.. .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            6899999999 8875 5789993

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.75  E-value=0.031  Score=26.77  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             ecCCCeEEEEeeEee-ecC--CeEEEEeCCCcE
Q psy4606          23 APEGGTIKLVCKAKG-YPR--PHITWKREDGQE   52 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~   52 (69)
                      ...|..+++.|.+.+ +|.  ..+.|++ +...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~   43 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETL   43 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEec-Ccce
Confidence            357999999999987 877  6788987 4433

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.57  E-value=0.069  Score=24.99  Aligned_cols=30  Identities=23%  Similarity=0.527  Sum_probs=24.7

Q ss_pred             CceEEecCCCeEEEEeeEe-eecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAK-GYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~   47 (69)
                      +..+.+..|+.+.|.|... ......+.|++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~   38 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYR   38 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence            4556788999999999998 45667899998

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd00096 Ig Immunoglobulin domain

Probab=95.41  E-value=0.025  Score=23.37  Aligned_cols=19  Identities=47%  Similarity=1.015  Sum_probs=16.5

Q ss_pred             EEEEeeEeeecCCeEEEEe
Q psy4606          29 IKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        29 ~~l~C~~~g~P~P~~~W~~   47 (69)
                      +.|.|.+.+.+.+.+.|++
T Consensus         1 ~~l~C~~~~~~~~~~~W~~   19 (74)
T cd00096           1 VTLTCLASGPPPPTITWLK   19 (74)
T ss_pred             CEEEEEecCCCCCcEEEEE
Confidence            3689999998888999998

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=95.35  E-value=0.032  Score=26.54  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=20.7

Q ss_pred             ecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          23 APEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..|+.++|.|.....-...+.|++.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq   28 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQ   28 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEe
Confidence            56799999999886654567899984

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.30  E-value=0.075  Score=25.87  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=23.8

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +....+..|+.++|.|...+.-  ...+.|++.
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            4556788999999999876533  466899984

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=95.27  E-value=0.044  Score=25.92  Aligned_cols=24  Identities=33%  Similarity=0.761  Sum_probs=19.4

Q ss_pred             CCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606          25 EGGTIKLVCKAKGYP------RPHITWKRE   48 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P------~P~~~W~~~   48 (69)
                      .|++++|.|.....+      .+.+.|++.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            378999999987753      568999984

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=95.26  E-value=0.066  Score=25.87  Aligned_cols=30  Identities=20%  Similarity=0.483  Sum_probs=22.2

Q ss_pred             CceEEecCCCeEEEEeeEeeec----CCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~   47 (69)
                      +..+.+..|+.++|.|......    ...+.|++
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~   38 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF   38 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence            4456677899999999886532    25689986

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=95.22  E-value=0.054  Score=28.85  Aligned_cols=29  Identities=28%  Similarity=0.590  Sum_probs=24.6

Q ss_pred             eEEecCCCeEEEEeeEe-eecCCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAK-GYPRPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~   48 (69)
                      ...+.+|+++.|.|.-. +...++++|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~   53 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKN   53 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEc
Confidence            46788999999999984 667889999984

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=95.01  E-value=0.1  Score=25.32  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CceEEecCCCeEEEEeeEeeec----CCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.....+    ...+.|++
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            5567788999999999876533    24699974

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=94.77  E-value=0.073  Score=25.90  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             CCCeEEEEeeEeeec------------CCeEEEEeC
Q psy4606          25 EGGTIKLVCKAKGYP------------RPHITWKRE   48 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P------------~P~~~W~~~   48 (69)
                      .|++++|.|.-....            .+.+.|+|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~   36 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI   36 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence            378999999987532            468999984

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=94.70  E-value=0.076  Score=25.08  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=18.7

Q ss_pred             CCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606          25 EGGTIKLVCKAKGYP------RPHITWKRE   48 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P------~P~~~W~~~   48 (69)
                      .|++++|.|.....|      ...+.|+|.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~   30 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL   30 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence            478999999887653      357999984

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.47  E-value=0.064  Score=23.79  Aligned_cols=27  Identities=30%  Similarity=0.622  Sum_probs=18.5

Q ss_pred             cCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|..|+|.|...+   ..+.|.+ ++..+.
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~-n~~~~~   31 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKK-NDQVSQ   31 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEe-CCccCC
Confidence            35889999996542   2289999 554444

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=94.46  E-value=0.044  Score=25.05  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |++++|.|.....+...+.|++.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~   23 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKG   23 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECC
Confidence            67899999987766678999984

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=94.33  E-value=0.096  Score=24.36  Aligned_cols=27  Identities=15%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             EecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      .+.+|++++|.|.... .....+.|++.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~   30 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKW   30 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECC
Confidence            5678999999998765 45678899984

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG3515|consensus

Probab=94.11  E-value=0.071  Score=33.77  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             EecCCCeEEEEeeEee-ecCCeEEEEeCC
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRPHITWKRED   49 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~~   49 (69)
                      .+..|+.+.|.|.+.| .|.+.+.|++.+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~   46 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHST   46 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecC
Confidence            7788999999999998 567899999943

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=93.87  E-value=0.2  Score=24.23  Aligned_cols=30  Identities=13%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             eEEecCCCeEEEEeeEe-----------eecCCeEEEEeCCC
Q psy4606          20 DIMAPEGGTIKLVCKAK-----------GYPRPHITWKREDG   50 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~-----------g~P~P~~~W~~~~~   50 (69)
                      ...+.+|+.+.|.|...           ......+.|+| ++
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK-~~   49 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYK-SS   49 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEE-CC
Confidence            35677899999999861           12234789999 54

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=93.11  E-value=0.36  Score=23.44  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             CceEEecCCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP------RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P------~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.-....      .-.+.|++.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq   42 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG   42 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence            5556778999999999754211      245889984

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=92.88  E-value=0.27  Score=23.66  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=18.6

Q ss_pred             CCCeEEEEeeEeeec----------CCeEEEEeC
Q psy4606          25 EGGTIKLVCKAKGYP----------RPHITWKRE   48 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P----------~P~~~W~~~   48 (69)
                      .|++++|.|.....+          ...+.|+|.
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~   34 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL   34 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence            378999999997644          256899984

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=92.23  E-value=0.58  Score=22.90  Aligned_cols=30  Identities=17%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CceEEecCCCeEEEEeeEeee----cCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY----PRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~----P~P~~~W~~   47 (69)
                      +..+.+..|+.+.|.|.....    +...+.|.+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            344566789999999999763    346899954

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PHA03052 Hypothetical protein; Provisional

Probab=92.22  E-value=0.55  Score=21.02  Aligned_cols=35  Identities=20%  Similarity=0.512  Sum_probs=25.9

Q ss_pred             CceEEecCCCeEEEEeeEe-eec--CCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAK-GYP--RPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~-g~P--~P~~~W~~~~~~~~   53 (69)
                      |..+.+..|+.+++.|++. |.|  .+.+.|.- ++..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence            3456677899999999994 444  46788987 66666

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=92.14  E-value=0.53  Score=23.24  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             EEecCCCeEEEEeeEeeecCC---eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP---HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P---~~~W~~~   48 (69)
                      ..+..++.++|.|.+.|.-..   .+.|.|.
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq   38 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKG   38 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence            445567889999999884433   5789884

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=91.62  E-value=0.14  Score=23.99  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             cCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          24 PEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      ..|+.++|.|.... .....+.|++.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~   27 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFN   27 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecC
Confidence            36899999998754 55567899983

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=91.21  E-value=0.32  Score=23.27  Aligned_cols=25  Identities=20%  Similarity=0.615  Sum_probs=19.0

Q ss_pred             CeEEEEeeE-eeecCCeEEEEeC-CCc
Q psy4606          27 GTIKLVCKA-KGYPRPHITWKRE-DGQ   51 (69)
Q Consensus        27 ~~~~l~C~~-~g~P~P~~~W~~~-~~~   51 (69)
                      ..+...|.+ .|+|.+.++|... +|+
T Consensus        21 ~v~VA~CiSa~GrPpa~ItW~t~l~G~   47 (98)
T cd05890          21 KMLVATCVSANGKPPSVVRWDTRLKGE   47 (98)
T ss_pred             eEEEEEEEcCCCcCCcEeEEEccCCCc
Confidence            456788995 6799999999863 343

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=91.09  E-value=0.31  Score=22.47  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=16.6

Q ss_pred             CeEEEEeeEeeec---CCeEEEEeC
Q psy4606          27 GTIKLVCKAKGYP---RPHITWKRE   48 (69)
Q Consensus        27 ~~~~l~C~~~g~P---~P~~~W~~~   48 (69)
                      +++.|.|.....+   ...+.|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~   25 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKI   25 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeE
Confidence            3689999987744   447899984

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>smart00406 IGv Immunoglobulin V-Type

Probab=90.53  E-value=0.62  Score=20.33  Aligned_cols=21  Identities=33%  Similarity=0.876  Sum_probs=15.4

Q ss_pred             eEEEEeeEeeecCC--eEEEEeC
Q psy4606          28 TIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        28 ~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      .+.|.|.......+  .+.|++.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~   23 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQ   23 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEe
Confidence            36899988775544  7889883

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=90.38  E-value=0.84  Score=21.18  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=15.3

Q ss_pred             CCeEEEEeeEeeecC---CeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPR---PHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~---P~~~W~~~   48 (69)
                      |+++.|.|...+...   ..+.|++.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~   26 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRS   26 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEEC
Confidence            578899998753211   35778874

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=90.14  E-value=0.45  Score=22.88  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      .+.+|+++.|.|..  .|..  .+.|+|
T Consensus         9 ~~~~G~~V~L~v~~--~p~~~~~~~W~k   34 (105)
T cd05774           9 QVAEGENVLLLVHN--LPENLLAYAWYK   34 (105)
T ss_pred             cccCCCCEEEEecC--CCCCceEEEEEc
Confidence            45679999999864  5655  899999

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=89.85  E-value=0.81  Score=22.21  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=17.0

Q ss_pred             CCeEEEEeeEeeec-------CCeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYP-------RPHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P-------~P~~~W~~~   48 (69)
                      |+++.|.|.-.-.|       .+.+.|.+.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~   31 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL   31 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence            68899999955322       478999973

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PHA03269 envelope glycoprotein C; Provisional

Probab=89.78  E-value=2  Score=26.54  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~   54 (69)
                      +..+|.+...    ...+.+|+.....|.+.. +|.  -.+.|+. |+..+.
T Consensus       326 ~yr~PsVsV~----p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~-ng~~V~  372 (566)
T PHA03269        326 SYKRPNITVI----GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS-NFGNIG  372 (566)
T ss_pred             EecCCCcccc----CCccccCCCceEEEEeeeecCCCceEEEEEe-CCcccC
Confidence            3356655433    234668999999999998 664  3578999 666654

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=89.26  E-value=0.72  Score=21.47  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=16.1

Q ss_pred             CCeEEEEeeEeeecC-CeEEEEeC
Q psy4606          26 GGTIKLVCKAKGYPR-PHITWKRE   48 (69)
Q Consensus        26 g~~~~l~C~~~g~P~-P~~~W~~~   48 (69)
                      |++++|.|.-..... -.+.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~   24 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKI   24 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEc
Confidence            678999998544322 26899984

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=88.78  E-value=1.5  Score=20.23  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          28 TIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        28 ~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ...|.+++.|. .+.+.|+- ||+.+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~v-dg~~~   54 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFV-DGEPL   54 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEE-CCEEc
Confidence            66777777776 56999999 88887

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=84.77  E-value=2.9  Score=19.59  Aligned_cols=34  Identities=24%  Similarity=0.462  Sum_probs=23.0

Q ss_pred             eEEecCCCeEEEEeeEee--e---cCCeEEEEeCCCcEEE
Q psy4606          20 DIMAPEGGTIKLVCKAKG--Y---PRPHITWKREDGQEII   54 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g--~---P~P~~~W~~~~~~~~~   54 (69)
                      ...+..|+.++..|...-  .   ....+.|.. +++.++
T Consensus        12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~iP   50 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKIP   50 (89)
T ss_dssp             SSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCEST
T ss_pred             CCEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEECC
Confidence            345668999999999853  2   567899998 666443

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG3515|consensus

Probab=84.61  E-value=3.7  Score=26.62  Aligned_cols=46  Identities=35%  Similarity=0.777  Sum_probs=30.9

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEe--eecCCeEEEEeCCCcE
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK--GYPRPHITWKREDGQE   52 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--g~P~P~~~W~~~~~~~   52 (69)
                      +.|.++|.....  ........+..+.+.|.+.  +.|.+.+.|.. +...
T Consensus        92 l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~-n~r~  139 (741)
T KOG3515|consen   92 LDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVAGRPNPNLRWGF-NNRA  139 (741)
T ss_pred             eccccCcccccc--ccchhhhcCCeEEEEEeecCCCCCCcceeeee-ccEE
Confidence            445566654433  3344566788999999554  48889999998 5543

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=83.83  E-value=3.4  Score=20.47  Aligned_cols=22  Identities=27%  Similarity=0.754  Sum_probs=17.0

Q ss_pred             CCeEEEEeeEeeecC-----------CeEEEEe
Q psy4606          26 GGTIKLVCKAKGYPR-----------PHITWKR   47 (69)
Q Consensus        26 g~~~~l~C~~~g~P~-----------P~~~W~~   47 (69)
                      +++++|.|...-.|.           +.+.|.+
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~   34 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTK   34 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEE
Confidence            678999999985542           3889987

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA03273 envelope glycoprotein C; Provisional

Probab=80.82  E-value=11  Score=23.33  Aligned_cols=43  Identities=16%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~   54 (69)
                      ..+|.+...    ...+.+|+.....|.+.. +|.  -.+.|++ |+..+.
T Consensus       235 yr~Psvsv~----~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~-dg~~V~  280 (486)
T PHA03273        235 YNAPLVDLS----VHPSLKGENYRAVCVVASYFPHSSVKLRWYK-NAKEVD  280 (486)
T ss_pred             ecCCccccc----CCccccCCCceEEEEeeeecCCCceEEEEEe-CCeecc
Confidence            356665443    224568999999999998 664  3678999 777665

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=80.36  E-value=3.1  Score=19.55  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=15.3

Q ss_pred             CeEEEEeeEeeec---CCeEEEEeC
Q psy4606          27 GTIKLVCKAKGYP---RPHITWKRE   48 (69)
Q Consensus        27 ~~~~l~C~~~g~P---~P~~~W~~~   48 (69)
                      .++.|.|.-...+   ...+.|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~   25 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRE   25 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEc
Confidence            3688999876433   347889984

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		6e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		9e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
           L+V VPP  + E   +D    +G   K+ CKA G+P+P +TWK+  G
Sbjct: 709 LNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
             +L V V P I+  ++ +     E G + LVC A+G P P ITWKR
Sbjct: 87  QAFLQVFVQPHIIQLKNETTY---ENGQVTLVCDAEGEPIPEITWKR 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-13
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-08
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-07
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-12
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-12
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	9e-12
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-11
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-06
2ens_A	96	Advanced glycosylation END product-specific recept	1e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-10
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-08
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-10
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-10
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-10
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-08
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-10
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-09
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-09
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-09
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-09
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-09
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	7e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-04
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	6e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-04

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 64.3 bits (156), Expect = 8e-15
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           +L VV P  +     S     P+   + + C    +P PH+ W   +G E      N  V
Sbjct: 98  HLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155

Query: 63  PKSKD 67
            K KD
Sbjct: 156 MKEKD 160

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 63.0 bits (153), Expect = 6e-14
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
              ++V +   ++ + + +     EG    +VC       P I WK   G+++I+K+   
Sbjct: 90  EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148

Query: 61  MV 62
            +
Sbjct: 149 FI 150

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 57.2 bits (138), Expect = 7e-12
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
           + V VPP +   +S  +  A  G ++ LVC A G+P P ++W + DG+ I 
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIE 238

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.0 bits (109), Expect = 7e-08
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKEGNTMV 62
          L V + P        S      G +   +C+  G  +   I+W   +G+++   +    V
Sbjct: 3  LQVDIVP--------SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV 54

Query: 63 PKSKD 67
            + D
Sbjct: 55 VWNDD 59

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 59.8 bits (145), Expect = 3e-13
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
           + V VPP I   + S +  A  G  +   C+A G P P I+W R +G+ I   E   +  
Sbjct: 91  VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKG 149

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.5 bits (113), Expect = 1e-08
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
          S     +G   ++VC+    P P ++W     +E+     N   
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFA 52

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 59.8 bits (145), Expect = 7e-13
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
           + V VPP I   + S +  A  G  +   C+A G P P I+W R +G+ I   E   +  
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKG 245

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             L++            S     +G   ++VC+    P P ++W     +E+
Sbjct: 91  VVLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEV 139

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 7  VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
          +    +    S S +    G +    C A G P   I W    G++II  +   +  
Sbjct: 2  MALLQV--TISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQK 55

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 56.4 bits (136), Expect = 2e-12
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
             PP I+     SD++  +G    L CKA+G P P I W +  G+ +   + +  
Sbjct: 6  EDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPR 58

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
             ++V   PDI   +        EG    + CK+ GYP P   W++++  
Sbjct: 85  ATIEVKAAPDITGHKR--SENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 43.3 bits (102), Expect = 5e-07
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKREDGQEI 53
            P I+   S   I+      + L C         +   W + +G E+
Sbjct: 2  NEPRIV--TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVEL 46

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
             L V+VPP  LN    S++ A E   I+  C   G P P + W + +G  +I  +   +
Sbjct: 305 AELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQI 361

Query: 62  VPKS 65
           V  S
Sbjct: 362 VGGS 365

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 51.8 bits (124), Expect = 7e-10
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
           + V  P   L++  +  I A  G T+ L C+  G P P I W++ + Q++    G++
Sbjct: 116 VMVAGPLRFLSQ--TESITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDS 169

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 51.8 bits (124), Expect = 7e-10
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 3   YLDVVVPPDILNE----ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
            + ++  P +  +    +  S+++A EG    L C   GYP P  TW R   + I ++  
Sbjct: 209 EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSK 267

Query: 59  NTMV 62
              +
Sbjct: 268 KYSL 271

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 48.7 bits (116), Expect = 9e-09
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3  YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGN 59
          +         ++E   SD +   GG + L C A+     P I WK+ DG  + +   +
Sbjct: 15 HHGGRRSLHFVSE--PSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGMDD 69

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
           + +       N    +     EG    +VC       P I WK   G+++I+K+  
Sbjct: 95  VKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV 147

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKEGNTMVPKSKD 67
             +  +   S      G +   +C+  G  +   I+W   +G+++   +    V  + D
Sbjct: 2  VLQV--DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
            S  ++  PE   +KL C   G+  P + WK + G    +   N  +  S +
Sbjct: 8  HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTM 61
            L V+VPP       +    A  G    L C    G P    TW + DG  +     +T 
Sbjct: 101 KLIVLVPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTR 157

Query: 62  VPKSKDIF 69
              +    
Sbjct: 158 AFSNSSYV 165

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 58.0 bits (140), Expect = 5e-12
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
           ++  PP I  ++S+ D +      I + C+AKG P P   W R + +   I +  
Sbjct: 11 NELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDP 64

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 54.5 bits (131), Expect = 8e-11
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
             + V   P  L+E    +++   G   +LVC+A G P+P + W   +G+ +     N
Sbjct: 305 ISVRVKAAPYWLDE--PKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPN 359

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 9   PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           P  +  + ++S  M   G  + L C A G P P I W ++ G 
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD 262

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 43.3 bits (102), Expect = 6e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
           L V   P    +E+   ++  EG  + L C    G P P I W     + I
Sbjct: 110 LQVSKSPLW-PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 57.0 bits (137), Expect = 8e-12
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L V+  P +   +   +   PE      +C+A G P P +   ++    +
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 56.1 bits (135), Expect = 9e-12
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
            + SD+  PE  +IKL C   G+  P + WK   G    +   N+ +     
Sbjct: 5  YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTM 61
           +L V+VPP       S       G    L C    G P    +W + DG  ++  +    
Sbjct: 98  HLTVLVPPSKPTI--SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKT 154

Query: 62  VPKSKDIF 69
                  F
Sbjct: 155 RAFMNSSF 162

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
            P  L +E ++ I        ++ CKA G P P I W R DG  +    G   +   
Sbjct: 2  KGPVFL-KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
             L V  P     +          G      C+  G P   ++W + DG+ I   E  
Sbjct: 300 TVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV 354

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 4   LDVVVPPDILNEE-----SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
             V+  P   +           +      TI L+C A+G+P P   W +    
Sbjct: 200 RLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY---PRPHITWKREDGQEII 54
           +  VV      E   +      G +  + C    +       ++W  ++ +   
Sbjct: 98  VRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 149

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 55.5 bits (134), Expect = 1e-11
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
           L V + P I       ++   EG    L C   G P+P ++W +     +       ++ 
Sbjct: 95  LQVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSRIAVLE 151

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 50.1 bits (120), Expect = 1e-09
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 5  DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           +   P I        + A        +C  + YP+P I+W R +   I + +    +
Sbjct: 3  KLPKAPVITTPLE--TVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSI 57

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L V  PP    +     +   +G  + L C+ +G P   ++W + D +E+
Sbjct: 186 SLKVKEPPVFRKK--PHPVETLKGADVHLECELQGTPPFQVSWHK-DKREL 233

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             L V  PP  + ++     +  +    +  CK  G P   + W + D  EI
Sbjct: 91  AQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEI 140

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 7  VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          + PP    +     +    G +    C   G     ITW + D +EI
Sbjct: 3  MAPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI 46

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
           V V            ++ P     +L C+A+GYP+  + W   D Q +  K   T   + 
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170

Query: 66  KDIF 69
           + +F
Sbjct: 171 EKLF 174

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
                P  L +E ++ I        ++ CKA G P P I W R DG  +    G   + 
Sbjct: 33 DADQKGPVFL-KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS 91

Query: 64 KS 65
            
Sbjct: 92 SD 93

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
             L+V VPP  + E +  D    +G   K+ CKA G+P+P +TWK+  G
Sbjct: 707 TPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
             L V  P     +          G      C+  G P   ++W + DG+ I   E 
Sbjct: 336 TVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES 389

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             L+V   P I             G T+ + C   GYP   I W+R D + +
Sbjct: 520 AKLNVYGLPYI---RQMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRAL 567

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
                PP I   ++  +     G ++ L C A G P P I+W+  DG++I
Sbjct: 424 GGRFDPPVI--RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKI 470

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 7   VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
              P +++             T+ L+C A+GYP P   W +    
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEG 288

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
            + V+V P I+   +  +  A  G  + L C   G   P +I W   DGQ I
Sbjct: 612 EVQVMVLPRII-PFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-DGQAI 661

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK---GYPRPHITWKREDGQEII 54
           +  VV      E   +      G +  + C            ++W  ++ +   
Sbjct: 133 VRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 54.8 bits (132), Expect = 6e-11
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L V  PP    +     +   +G  + L C+ +G P   ++W + D +E+
Sbjct: 378 SLKVKEPPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHK-DKREL 425

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
           G + +  PP  + +   SDI    G  ++L    +G     + W + D  EI+ +  N  
Sbjct: 470 GSITLKAPPRFVKK--LSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIVRESDNIW 526

Query: 62  V 62
           +
Sbjct: 527 I 527

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
             L V  PP  + ++     +  +    +  CK  G P   + W + D  EI       M
Sbjct: 283 AQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRM 340

Query: 62  V 62
            
Sbjct: 341 S 341

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.8 bits (119), Expect = 4e-09
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           VPP    +     +    G +    C   G     ITW + D +EI
Sbjct: 196 VPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI 238

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.4 bits (118), Expect = 4e-09
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
          PP  +  E    + A  G  I L CK  G P   I W + +  ++       M
Sbjct: 5  PPYFI--EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKM 54

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
           +PP         D+    G  +   C+  G     ++W + DG+ +        
Sbjct: 100 LPPSF--ARKLKDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQT 150

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 54.7 bits (131), Expect = 7e-11
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
            + +V    I    SS D    +        + K YP+   TW      
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L++   P +L           E    +  C + GYP P  TWK+   +  
Sbjct: 409 TLNIRRKPQVL----------AEASASQASCFSDGYPLPSWTWKKCSDKSP 449

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 41.6 bits (97), Expect = 3e-06
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
            + +               M        LVC ++  P P + W   D Q    KE +  V
Sbjct: 134 TVSIRNTLLYTLRRPYFRKM---ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV 190

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 3/48 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
          L       +     ++ +      +I L             W  +   
Sbjct: 44 LRPQSSGTV---YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS 88

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEI 53
           +D+   P      +   +    G  + + CKA        +TW+  + + +
Sbjct: 224 IDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL 269

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L V+  P +   +   +   PE      +C+A G P P +   ++    +
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.0 bits (129), Expect = 1e-10
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
              V   P+I       D+   E  ++ L C A      ++TW +   Q + I  G    
Sbjct: 544 SFHVTRGPEI---TLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600

Query: 63  PKSKDI 68
           P  K++
Sbjct: 601 PVCKNL 606

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.1 bits (124), Expect = 6e-10
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 3   YLDVVVPPDI-LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI----IIKE 57
           ++ V   P +       S + A  G  +++  K  GYP P I W + +G  +     IK 
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKA 379

Query: 58  GNTMV 62
           G+ + 
Sbjct: 380 GHVLT 384

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            +   V P I    +  +     G +I++ C A G P P I W + D + +
Sbjct: 660 TVLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETL 707

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4   LDVVVPPDILNEESSSDI-MAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTM 61
           L V VPP I  +   S +     G T  L C     P P HI W  +  +E   +    +
Sbjct: 415 LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAV 474

Query: 62  VP 63
             
Sbjct: 475 SV 476

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 40.9 bits (95), Expect = 6e-06
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 3   YLDVVVPPDILN--EESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
           Y+ VVV   I +     S  I    G  + L C A+      I + 
Sbjct: 214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.9 bits (122), Expect = 1e-10
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
           +    ++ E          GGT+ L C+    P P I W + DG  + +     
Sbjct: 7  GLEEVQLVVE--PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSPV 58

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.9 bits (124), Expect = 3e-10
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 9/53 (16%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           +    +    D             +G ++ L  ++     P +  +   G+ I
Sbjct: 96  LLVFGLTANSDT---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI 139

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI 68
          ++  +G T++L C A         WK  +  +I+  +G+ +      +
Sbjct: 5  VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL 52

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
           G + +   PD L+    +D  A  G  ++  C A G PRP + W R DGQ + 
Sbjct: 287 GRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLA 336

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 49.1 bits (117), Expect = 6e-09
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
               P I   +  +D  A  G  + L C A G P P I W++ DG +  
Sbjct: 203 RQYAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS 250

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 9  PPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           P    +   +          + L C+A+  P     WK  +G E+ +   +   
Sbjct: 4  GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYR 57

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 43.7 bits (103), Expect = 5e-07
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTMV 62
           L      +  + E    +   EG  +   C     YP     W   +    I  +G   V
Sbjct: 95  LRFGFLQEF-SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 52.8 bits (126), Expect = 3e-10
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
            + +V    I    SS D    +        + K YP+   TW      
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
            + +               M        LVC ++  P P + W   D Q    KE +  V
Sbjct: 134 TVSIRNTLLYTLRRPYFRKM---ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV 190

Query: 63  PKSKDIF 69
            K ++  
Sbjct: 191 VKKEEKV 197

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 3/48 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
          L       +     ++ +      +I L             W  +   
Sbjct: 44 LRPQSSGTV---YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS 88

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 40.0 bits (93), Expect = 9e-06
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
           + +      + +   +    G  + + CKA        +TW+  + + +
Sbjct: 224 IDLNQTP--QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL 269

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
             PP  +  +   D +   GG    VC+A G P+P +TW +  G+++  +   T+ 
Sbjct: 3  GEEPPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIE 56

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           V P               GG + + C A G P P++ W +   +++
Sbjct: 204 VAPRFS--ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDL 246

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 46.7 bits (111), Expect = 4e-08
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 2   GYLDVVVPPDILNEESS-----SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56
             L V+    + +   +        +     T  ++C A G P P ITW + D   +   
Sbjct: 94  AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPS 152

Query: 57  EGNTMV 62
             N  +
Sbjct: 153 ASNGRI 158

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 4   LDVVVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           L +   P                G T++L     G P P +TW     + +
Sbjct: 95  LLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLL 144

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 47.4 bits (113), Expect = 1e-08
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           P I   +   D+    G   +L C+  G P P I W R  G+E+
Sbjct: 7  APGIR--KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKEL 48

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 3   YLDVVVPPDIL---NEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
            L+V VP  I      E    + A  G  + +     G P P ITW++     I 
Sbjct: 93  SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLID 146

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
          + P    E    ++         LVCK  G+P+P + W R  G+EII       + + K 
Sbjct: 3  MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKG 59

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.8 bits (119), Expect = 4e-10
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
          L     P ++  E         G  +  +C AK   P   + W R    ++
Sbjct: 3  LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
           G L     P+ +     +DI      ++   CKA G P+P   W + +G  ++
Sbjct: 288 GQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLL 337

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.1 bits (125), Expect = 6e-10
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
               P I   +    + A +G T+KL C A G P P I W+R DG+ I
Sbjct: 201 GEYEPKIE-VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 48.7 bits (116), Expect = 8e-09
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 9  PPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           P  + E       +  E   +KL C+ KG P+PHI WK  +G ++ I       
Sbjct: 5  GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYS 58

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 6/61 (9%), Positives = 12/61 (19%), Gaps = 2/61 (3%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTMV 62
           L      +     + S +    G  + L+C            W   +             
Sbjct: 96  LQFAYLENF-KTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ 154

Query: 63  P 63
            
Sbjct: 155 E 155

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 49.7 bits (119), Expect = 5e-10
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 9  PPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           P   N E         P   T+K  C A G P P + W + +G+E 
Sbjct: 4  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF 49

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 52.2 bits (125), Expect = 5e-10
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            L VV  P    ++    I+  +G  + + CK  G P P++ W   + + +
Sbjct: 302 KLTVVSAPKYE-QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPL 350

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.8 bits (124), Expect = 6e-10
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTMV 62
          L V   P +  ++  ++++  E     L C  +G  +    +WK+ DG+    +E N  +
Sbjct: 1  LPVDKYPVL--KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL 57

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.8 bits (111), Expect = 4e-08
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
               P       S D+MA  G    + C     P  +  + + +G+++
Sbjct: 209 YKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDV 253

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQ 51
                         + +    EG   +L C     YP+P ITWK+    
Sbjct: 95  FRKTYLIAS--PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSG 141

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 49.6 bits (119), Expect = 5e-10
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            + V P         D    EG    L C  +G P P ITW   +GQ I
Sbjct: 6  SGMEVAPSFS--SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPI 52

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 49.7 bits (119), Expect = 5e-10
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
          PP IL  +  ++      GT  L CKA G P P I+W + +G     ++    + + 
Sbjct: 8  PPIIL--QGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQ 61

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 6e-10
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 7  VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSK 66
          + PP  +  +   ++   EG   ++  K  G P P ++W   +G+ +   + + M+   K
Sbjct: 3  MGPPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK 59

Query: 67 DIF 69
           + 
Sbjct: 60 GLH 62

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.4 bits (123), Expect = 6e-10
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             PP      +  D     GG    +C+A G PRP I W +  G+++
Sbjct: 3  GETPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKV 47

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 3   YLDVVVPPDILNEESS-----SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
            L V+    I     +        +     T  ++C A G P P ITW + D   +    
Sbjct: 95  RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSN 153

Query: 58  GNTMVPKSKD 67
            N  + + + 
Sbjct: 154 NNGRIKQLRS 163

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 49.2 bits (118), Expect = 7e-10
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           PP      S  D    EG  + +  + +G P+P ++W R + Q +
Sbjct: 4  APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPV 46

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 50.9 bits (122), Expect = 8e-10
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 5   DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
               PP+ +       +   +G  ++L  +  G P P + + R DG EI 
Sbjct: 99  AETAPPNFVQRLQ--SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQ 145

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
              P          ++  EG T        G+P P ++W R DGQ I
Sbjct: 2  TTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVI 46

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 49.2 bits (118), Expect = 9e-10
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          +   P I+      D         K   KA G PRP   W + DG+ I
Sbjct: 3  ISSKPVIVTG--LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAI 47

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 49.3 bits (118), Expect = 9e-10
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            +   IL       +   EG + +  C   G P P +TW R  GQ +
Sbjct: 11 TTLAARIL--TKPRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVL 55

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 50.6 bits (121), Expect = 9e-10
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTM 61
           +L V   P    E    D+  P     +L C+A G P P  I W R    +I     +  
Sbjct: 92  WLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPAPSPS 148

Query: 62  V 62
           V
Sbjct: 149 V 149

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 49.4 bits (118), Expect = 2e-09
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             ++   +   +   +G  +KL C  +G   P I W + DG  +
Sbjct: 2  GLKLM--GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVV 43

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 51.0 bits (122), Expect = 9e-10
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             +VP       +        G  +KL C+A G+P     W +   +EI
Sbjct: 11 SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEI 59

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 14/71 (19%)

Query: 3   YLDVVVPPDILNEESS-------------SDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
            LDV   P+                    +      G T+ L C A G P PH  W + +
Sbjct: 97  QLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-N 155

Query: 50  GQEIIIKEGNT 60
              +  +    
Sbjct: 156 ELPLTHETKKL 166

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 51.3 bits (123), Expect = 9e-10
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
            YLD+   P      + +   + EG  I + C  K  P   I W+R D   +  K 
Sbjct: 93  MYLDIEYAPKF--ISNQTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKN 145

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
          +    E G + LVC A+G P P ITWKR         EG+
Sbjct: 9  NETTYENGQVTLVCDAEGEPIPEITWKR-AVDGFTFTEGD 47

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
             PP+I+ +    +     GG     C A+G P P I W++ +G+++   +    V
Sbjct: 3  GAHPPEIIRK--PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTV 56

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 9   PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
            P I         +   G T+ + CKA G P P+I W + +  ++ +      + 
Sbjct: 110 FPVITQGPG--TRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLK 161

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 48.9 bits (117), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI------IIKE 57
          +   V P I    +  +     G +I++ C A G P P I W + D + +      ++K+
Sbjct: 5  VLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKD 61

Query: 58 GNT 60
          GN 
Sbjct: 62 GNR 64

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           +    P  +           EG ++KL C+    P P + WKR + + +
Sbjct: 10 HEHKRAPMFI--YKPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMV 56

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.9 bits (117), Expect = 1e-09
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            P  L  ++  D+   EG   ++ CK  G P P ++W+  DG+ +
Sbjct: 8  FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV 50

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 49.1 bits (117), Expect = 1e-09
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 3  YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQ 51
           L V  PP I    S+    A  G   ++ C  +  P P  I W  ++  
Sbjct: 8  TLTVNGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIIIKEGNTM 61
           +L V  P    N  +  +++  E     L C          ++  R  G+ ++     + 
Sbjct: 82  HLYVKDPARPWNVLAQ-EVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF 140

Query: 62  VPK 64
            P 
Sbjct: 141 SPW 143

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.4 bits (102), Expect = 7e-07
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
           +  PP +    +  +++   G   ++VC A         + + +  ++ I +
Sbjct: 183 IPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ 232

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
           P I+   +  D++  +     L CK +G P P I W + DG+ +   E  +
Sbjct: 9  SPRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKS 57

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 3   YLDV-VVPPDILNEESSSDIMAPEGGTIKLVC-KAKGYPRPHITWKREDGQEIIIKEGNT 60
            L + V+  D   E    D    +G T  L C   KG P P + W + DG  +   +  +
Sbjct: 101 SLQIAVLRDDFRVE--PKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMS 157

Query: 61  MVPKSK 66
               S+
Sbjct: 158 FGASSR 163

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
            P DI+      D+ A  G  + L C A G P P I W++   
Sbjct: 112 YPADIV--VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 2  GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRP-HITWKREDGQEIIIKEGN 59
          G     + P     E   ++   EG  + L+C     +P      W   +   + I    
Sbjct: 1  GPGSGYLDPFP--PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDK 57

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
              +  ++        GG+++L C+A G P P I W  E   
Sbjct: 21 MAGFV--QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 4  LDVVVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           +    P   N E         P   T+K  C A G P P + W + +G+E 
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF 60

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 3   YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           +LDVV       IL     ++     GG ++ VCK     +PHI W +   +
Sbjct: 107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 50.1 bits (119), Expect = 3e-09
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 3   YLDVVVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNT 60
            L+VV    I      ++ +   +G  + L+ + + +P+P H  W     +    K  + 
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRTFTDKWEDY 362

Query: 61  MVPKSKD 67
              +++ 
Sbjct: 363 PKSENES 369

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.5 bits (115), Expect = 9e-09
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 8/51 (15%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            + V   P+I        +         L C A G+P P I W    G E 
Sbjct: 406 NVYVNTKPEI--------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQ 448

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           Y+ V  P  +        +   E     + C        + + K   G+ +
Sbjct: 108 YVFVRDPAKLFLV--DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQ 51
             P +    S +  +  EG    + C  K      + TWKRE+ Q
Sbjct: 210 AVPVVSV--SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQ 252

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            LDV+  PD     S  D     G  + L C +   P P  +W+  +G   
Sbjct: 552 TLDVLYGPDTP-IISPPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQ 600

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
            L+V+  PD     S S      G  + L C A   P    +W   DG   I +    + 
Sbjct: 374 ILNVLYGPDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGN--IQQHTQELF 429

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           L+V+  PD     S  +     G  + L C A   P    +W   +G   
Sbjct: 197 LNVLYGPDAP-TISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQ 244

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 6/65 (9%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 3   YLDVVVPPDI--LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
              + V  ++   +  S++     +   +   C+ +     ++ W   +GQ + +     
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQ 514

Query: 61  MVPKS 65
           +   +
Sbjct: 515 LSNGN 519

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 2/64 (3%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
           G   V       +  S++     +   +   C+ +        W   + Q + +     +
Sbjct: 102 GQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWV-NNQSLPVSPRLQL 159

Query: 62  VPKS 65
              +
Sbjct: 160 SNGN 163

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 6/48 (12%), Positives = 15/48 (31%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
            + V   P      S++     +   + L C+ +     ++ W     
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII 54
            L V+V P         D     G   KL C+ K G       W++    + +
Sbjct: 115 LLTVLVKPSG--TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 49.4 bits (118), Expect = 4e-09
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 2   GYLDVVVPPDIL---NEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
             L+V VP  I      E    + A  G  + +     G P P ITW++     I     
Sbjct: 92  ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGH 150

Query: 59  NTMV 62
             ++
Sbjct: 151 YQVI 154

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 48.6 bits (116), Expect = 9e-09
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
          + P    E    ++         LVCK  G+P+P + W R  G+EII       +
Sbjct: 3  MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRI 54

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 49.0 bits (117), Expect = 4e-09
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           PP I+   S  D++  +G    L CKA+G P P I W +  G+ +
Sbjct: 8  FPPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 45.6 bits (108), Expect = 7e-08
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 3   YLDV-VVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNT 60
            L+V ++  D    ++ SD+M   G    + C+  +G+P P I+WK+ DG  +  K+   
Sbjct: 104 SLEVAILRDDF--RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERI 160

Query: 61  MVP 63
            + 
Sbjct: 161 TIR 163

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 49.2 bits (117), Expect = 5e-09
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
            LDV+       IL     ++  A  G  ++  CK     +PHI W +  
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHV 260

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 49.2 bits (117), Expect = 6e-09
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 2   GYLDVVVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
                   P     E      +  P   T++  C A G P P I+W + +G+E 
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREF 164

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.1 bits (101), Expect = 8e-07
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
           P     +    ++   G  ++L C    G P     W + DG  +
Sbjct: 7  VPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGL 50

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.5 bits (113), Expect = 6e-09
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
          PP I   +   +      GT  L C A G P P I W++ DG  +  ++     
Sbjct: 8  PPVIR--QGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQ 58

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 48.4 bits (115), Expect = 7e-09
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
           Y+ +   P  L E    D          L C+A+G P P  + W + D   +
Sbjct: 100 YVGLEGLPYFLEE--PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPL 148

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
              +      +I    G T  L C+ +     P + W R DGQ +
Sbjct: 2  ESPFVGNPG--NITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQIL 44

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 48.4 bits (114), Expect = 1e-08
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
            +    P + ++  ++  +   EG  I + C        ++TW     
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 38.7 bits (89), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 15 EESSSDIMAPEGGTIKLVCK---AKGYPRPHITWKREDGQE 52
            + +++    GGT++L C    A     P I+W +    +
Sbjct: 6  RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPD 46

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 9/53 (16%)

Query: 1   MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           +    +    D             +G ++ L  ++     P +  +   G+ I
Sbjct: 95  LLVFGLTANSDT---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI 138

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.0 bits (103), Expect = 4e-07
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI 68
          ++  +G T++L C A         WK  +  +I+  +G+ +      +
Sbjct: 4  VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL 51

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5  DVVVPPDI-LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          ++  PP I L        +   G  + LV   +G PRP + W +  G  +
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL 65

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
                EG  +   C+  G P+P I W + DG++I  K  +  + +  D
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLD 63

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 7  VVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             P     E      +  P   T++  C A G P P I+W + +G+E 
Sbjct: 9  TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREF 56

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 3   YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
            LDV+       IL     ++  A  G  ++  CK     +PHI W +    
Sbjct: 103 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 47.8 bits (113), Expect = 1e-08
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 2/51 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           Y+ V  P  +        +   E     + C          +    DG+ +
Sbjct: 85  YVFVRDPAKLFLV--GLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.4 bits (108), Expect = 2e-08
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             I  E +S  +M   G T+ L C A G P PH  W + +   +
Sbjct: 3  KLQICVEPTSQKLM--PGSTLVLQCVAVGSPIPHYQWFK-NELPL 44

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 46.8 bits (111), Expect = 3e-08
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 19  SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
             +   EG  + L C   G P P ++W + + + +   +   +  ++    
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTA 174

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.6 bits (106), Expect = 4e-08
 Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          + P IL   +S  I    G T  L     G P P  TW        
Sbjct: 1  LKPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA 43

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 45.6 bits (108), Expect = 4e-08
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
              V P         D+   EG   +  CK +GYP P + W + D   +
Sbjct: 36 EKPHVKPYFTKT--ILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPV 82

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 44.6 bits (106), Expect = 4e-08
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
                +G       +  G P P   W + +G +I
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKI 46

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 46.7 bits (110), Expect = 5e-08
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQ 51
            L+V   P++  E         +   +KL CKA   P      W   +G 
Sbjct: 225 TLNVQYEPEVTIE-GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 4   LDVVVPPDILNEESSSDIMA---PEGGTIKLVCK-AKGYPRPHITWKREDGQEIIIKE 57
           L V+  P    E + + + A    +   +   C  A G P   ++W+     E   +E
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE 182

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 5e-08
 Identities = 5/37 (13%), Positives = 12/37 (32%)

Query: 15  EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           +    +     G  + L C+ +G       W   + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE 198

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 44.6 bits (106), Expect = 5e-08
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 2  GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          G   +   P I           P G   + +   +  P   + W   +G E+
Sbjct: 1  GPFTLDHAPRIT--LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVEL 49

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 5   DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
                   + +  +  +   EG T++ VC+A G P P I W       +
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 46.0 bits (109), Expect = 5e-08
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             +  P +   +    +   EG  + + C+   YP   I+W R DGQ +
Sbjct: 14 GSHMYAPKL---QGPVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLL 59

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEII 54
           +L V  P    N  +  ++   EG    L C       +  ++  RE G++++
Sbjct: 82  HLYVKDPAHSWNLLAQ-EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL 133

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
              PP I  E S   ++   G   ++VC A           +    ++ I  
Sbjct: 183 HPEPPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 45.5 bits (107), Expect = 1e-07
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQ--EIIIKEGN 59
            L V  PP++ +     +          L C A+  P P    W    G      + +G 
Sbjct: 210 NLTVYYPPEV-SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGA 268

Query: 60  TMV 62
            ++
Sbjct: 269 QLL 271

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 4/52 (7%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
           +L V+  P          +           C +  G P   ITW   D   +
Sbjct: 111 WLRVLAKPQN--TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGM 159

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
            +      +        +   EG  + L C   G P P ++W + + + +   +   +  
Sbjct: 217 AEKNRARVL--GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKF 273

Query: 64  KSKDIF 69
           ++    
Sbjct: 274 EAGRTA 279

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEI 53
          +D    P  +   S           + L CK        HI W + D +EI
Sbjct: 2  IDPFTGPHFVEYLS---WEVTGECNVLLKCKVANIKKETHIVWYK-DEREI 48

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 34.5 bits (79), Expect = 8e-04
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 13/60 (21%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG----------YPRPHITWKREDGQEI 53
           L      +++ E      +A     +K+   A+G               + W   +G  I
Sbjct: 93  LVDEAFKELMMEVC--KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI 149

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 44.7 bits (105), Expect = 2e-07
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
           Y+  +    I    ++   +  +G  I L+C   G    +  W     +   + E  T
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 3   YLDVVVP--PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
           Y+ V  P    + N+     I   E   I + C+    P+  +T   + G   +
Sbjct: 85  YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVAL 137

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 42.7 bits (101), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           P I+  +   D     G +++L  K  G      TW +   ++I
Sbjct: 7  GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQI 48

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 43.5 bits (102), Expect = 5e-07
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 17  SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
            +  +  P  G ++L C+A+GYP   ++W+     
Sbjct: 109 DTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVP 143

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.2 bits (101), Expect = 8e-07
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 5   DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           +    P I++  + + +    G  I+L+C   G       WK  +G  I
Sbjct: 204 NKPTRPVIVSPANET-MEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVI 250

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 9   PPDILNEESSSDIMAPEGGTIKLVC------KAKGYPRPHITWKREDGQEI 53
           P    N ++      P  G   LVC      K +    P + W  +D + +
Sbjct: 101 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW-YKDCKPL 150

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 42.7 bits (100), Expect = 9e-07
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQE 52
           + +  PP +   +SS  I   EG T  LVCK++  P      W +    E
Sbjct: 78  IQLHGPPRVKAVKSSEHIN--EGETAMLVCKSESVPPVTDWAWYKITDSE 125

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 42.8 bits (100), Expect = 9e-07
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 2   GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
               V +    L  +   D+   + G I L C++ G YP+P I W    G+ I
Sbjct: 109 EKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 41.7 bits (98), Expect = 9e-07
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          L V  PP +++ E              +    +G P P + W   +GQ +
Sbjct: 3  LTVYYPPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLH-NGQPL 46

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 7   VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGNTMVPKS 65
           +         S SD   P     +++C   G +P PH++W     +   I    +  P++
Sbjct: 102 LSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPET 161

Query: 66  K 66
           +
Sbjct: 162 E 162

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
             S  +A  G ++ L C   G   P  +W+ +   
Sbjct: 6  TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS 41

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
             +  EGG +K VCK + Y +   +TW     +++
Sbjct: 9  MHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL 43

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 6/55 (10%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVC-----KAKGYPRPHITWKREDGQEI 53
           L V    D      S   +     +  LVC       +      I W + D   +
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLL 166

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKA---KGYPRPHITWKREDGQEI 53
             P I++      I A  G  + + CK     G P   + W   +   I
Sbjct: 225 TIPVIISP--LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI 271

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 19 SDIMAPEGGTIKLVCK-------AKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
                EG  + L C        A   PR ++TW + D    +  E  T +     
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 40.7 bits (95), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
            +  I   EG T+ L C         + W    G  I + E
Sbjct: 6  NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE 47

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
           D+   EG +    C+        + W   D   +   E N + 
Sbjct: 21 EDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEID 63

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          V   P I   ES             +    KG P+P + W   +G  +
Sbjct: 1  VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFY-NGAIL 42

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 40.4 bits (94), Expect = 4e-06
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 19 SDIMAPEGGTIKLVCKAKGYP---RPHITWKREDGQEIIIKEG 58
                 G  I  + K K      +P I W +    ++  K G
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG 57

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 39.7 bits (93), Expect = 4e-06
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
             +   G  ++L C+ +      I W R DG ++
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL 43

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 4   LDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
           L+V   P+   +   + +  +M  +       C ++ G P P ITW R +GQ +
Sbjct: 110 LNVFAKPEATEVSPNKGTLSVME-DSAQEIATCNSRNGNPAPKITWYR-NGQRL 161

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 39.4 bits (92), Expect = 5e-06
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          +   P  +        ++   G  ++L C+ +      I W R DG ++
Sbjct: 5  EQAQPWGV--PVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL 49

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 9   PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
            P I+  ++  D+   EG   +L C+    P   + W   +G  +
Sbjct: 352 APFIM--DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVL 392

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 39.3 bits (91), Expect = 8e-06
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 2/51 (3%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
           D    P I  +       A  G  +   C A       +T+      E +
Sbjct: 5  CDDFPXPQITVQ--PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEAL 53

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQEIII 55
             +  PP  +    + ++   +   I L C         +ITW + + QE+II
Sbjct: 123 SHIRKPPSCI--PETYELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQELII 172

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 5/71 (7%)

Query: 4   LDVVVPPD-ILNEESSSDIMAPEGGTIKLVCKAKGYPRP----HITWKREDGQEIIIKEG 58
           L V+   D          I    G    + C A           I W+   G  I +  G
Sbjct: 220 LTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG 279

Query: 59  NTMVPKSKDIF 69
              +  S    
Sbjct: 280 VYSILTSSGGI 290

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 7  VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGN 59
           V   I+       + A     + L C+    P   + W + DG+E+       + KE  
Sbjct: 9  DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQKEDT 66

Query: 60 T 60
           
Sbjct: 67 V 67

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
          + ++   EGGT  L C+        + W     Q +   +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDD 52

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          + P    +E   ++      ++   C     P+   +W + D    
Sbjct: 2  IDPFT--KEVVVNVDDDGVISLNFECDK-MTPKSEFSWSK-DYVST 43

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 20  DIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII 54
                    + L CK     +  HI W + D +EI 
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREIS 264

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 19  SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
                 EG +    C+      P +TW ++D +
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 37.5 bits (87), Expect = 7e-05
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)

Query: 7   VVPPDILN--EESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
           +   D  N  E   S   A  G T+ + C  K      +  
Sbjct: 240 IFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWV 280

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 37.7 bits (86), Expect = 7e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHI--TWKREDGQEIIIKEGNT 60
           L V  PP +    ++    AP     +L+C     YP   +   W+   G     ++   
Sbjct: 286 LAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG 345

Query: 61  MVPKS 65
               S
Sbjct: 346 QRWLS 350

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          P  IL+ +    +       + L C+         TW + DGQ++
Sbjct: 8  PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYK-DGQKV 50

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 11/59 (18%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
          P      E+  D+   EGG   L C       P + W       +       + +EG  
Sbjct: 8  PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPGDKYSLRQEGAM 62

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
                E   +++   E GT    CK   +P   +TW++    E+         +EG T
Sbjct: 8  ANCFTEE--LTNLQVEEKGTAVFTCKT-EHPAATVTWRK-GLLELRASGKHQPSQEGLT 62

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEG 58
          VV   +   + +  ++ A  G +  L C+     +  +TW + DG+++       +   G
Sbjct: 9  VVFAKE---QPAHREVQAEAGASATLSCEVAQ-AQTEVTWYK-DGKKLSSSSKVRVEAVG 63

Query: 59 NT 60
           T
Sbjct: 64 CT 65

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
          P  I+      D     G  ++L C+      P + W + D + I       ++ EG  
Sbjct: 8  PAAIIKPLE--DQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAIRKSQKYDVVCEGTM 62

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
           +L V+    +L    +  +   EG TI L C +    P   +T+ + +G+  
Sbjct: 80  HLTVLFEWLVL---QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQ 127

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 8   VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQE 52
           V  +     S + +    G ++ ++C         I  W   +G +
Sbjct: 328 VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 9/49 (18%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
            +    G T     +    P  H  WK   GQ +       II++G  
Sbjct: 13 YGVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPLAASPDCEIIEDGKK 59

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 19 SDIMAPEGGTIKLVCKAKGYP---RPHITWKREDGQEIIIKEGNTMVPKSKD 67
           D     GG+I    +  G      P + W +    ++  K G  +      
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 6   VVVPPDILNEESSSDIMAPEGGTIKLVCKA----KGYPRPHITWKREDGQEIIIKEGNTM 61
             VPP I +           G  + + C          R  + W   DG++      +  
Sbjct: 221 NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVT 279

Query: 62  VPKSK 66
           + +S 
Sbjct: 280 INESI 284

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 34.7 bits (80), Expect = 3e-04
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 12/59 (20%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
          P     +       A EG T  L C+        + WK+   + +       + ++G  
Sbjct: 8  PARFTQD--LKTKEASEGATATLQCELS--KVAPVEWKK-GPETLRDGGRYSLKQDGTR 61

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 19 SDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
            +   E G ++   +A K      + +   + +EI
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEI 44

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
            L++     +L     S  +  EG  + L C A       ++ + R +G+  
Sbjct: 77  QLEIHRGWLLL---QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAF 124

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 9/49 (18%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
                +GG ++ V +    P+  + W + +GQEI          +G  
Sbjct: 16 PAYQVDKGGRVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYIFEHKGCQ 62

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 7/45 (15%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
           DVV+ P       S  I    G  + L C A+      I +  E
Sbjct: 8  YDVVLSP-------SHGIELSVGEKLVLNCTARTELNVGIDFNWE 45

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          P  I+      D     G  +++  +        + W + +G E+
Sbjct: 8  PVLIV--TPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMK-NGVEL 48

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 34.6 bits (80), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 3  YLDVV-VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
           L V  +P      E   +  A EG T  L C+        + W +   + +
Sbjct: 12 MLTVRALPIKFT--EGLRNEEATEGATAVLRCELSK--MAPVEWWK-GHETL 58

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
           D  A  G  ++L C+       ++ W + +G+EII   
Sbjct: 15 EDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP 51

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 17 SSSDIMAPEGGTIKLVCKAKGY-PRPH-ITWKREDGQEI 53
          SS D       TI+L+C   GY P    ITW   DGQ +
Sbjct: 15 SSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLE-DGQVM 52

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 33.9 bits (78), Expect = 6e-04
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 9/49 (18%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
            +    G       + +      + W+R  G +I       +  EG  
Sbjct: 16 RSVEVAAGSPAVFEAETER-AGVKVRWQR-GGSDISASNKYGLATEGTR 62

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 3   YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
            L+V +   +L    +   +  E   I L C +        +T+ + +G++ 
Sbjct: 83  QLEVHIGWLLL---QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDR 130

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 34.5 bits (79), Expect = 8e-04
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 4   LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
           L +           S   ++       L C+      P +   + DG+ + + +      
Sbjct: 100 LKIQERV-------SKPKISWTCINTTLTCEVMNGTDPELNLYQ-DGKHLKLSQRVITHK 151

Query: 64  KSKDI 68
            +  +
Sbjct: 152 WTTSL 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.43
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.39
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.37
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.31
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.3
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.29
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.27
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.26
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.26
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.26
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.26
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.25
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.21
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.17
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.15
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.1
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.07
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.03
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.03
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.02
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.02
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.02
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.01
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.01
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.0
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.99
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.97
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.97
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.97
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.97
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.96
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.96
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.95
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.95
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.95
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.94
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.93
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.93
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.93
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.93
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.92
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.92
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.9
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.9
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.89
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.89
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.89
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.88
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.88
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.87
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.87
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.87
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.86
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.86
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.86
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.86
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.86
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.85
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.85
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.84
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.84
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.84
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.83
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.83
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.83
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.83
2ens_A	96	Advanced glycosylation END product-specific recept	98.83
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.82
1he7_A	126	High affinity nerve growth factor receptor; transf	98.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.8
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.8
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.78
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.76
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.76
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.76
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.76
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.74
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.73
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.72
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.71
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.71
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.71
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.7
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.7
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.7
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.69
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.69
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.67
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.67
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.67
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.66
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.66
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.66
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.66
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.66
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.65
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.64
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.64
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.64
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.64
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.64
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.64
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.64
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.63
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.61
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.61
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.61
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.6
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.6
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.59
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.59
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.58
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.58
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.58
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.57
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.57
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.56
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	98.56
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.56
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.55
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.55
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.55
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.55
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.54
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.53
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.53
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.52
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.52
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.5
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.5
1k5n_B	100	Beta-2-microglobulin, light chain; MHC(major histo	98.5
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.5
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.49
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.49
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.48
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	98.48
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.48
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.47
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.47
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.47
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.47
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.46
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.46
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.46
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.46
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.46
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.45
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.45
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.44
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.44
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.42
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.42
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.41
3gbl_A	97	BETA2-microglobulin; immune response, immunoglobul	98.41
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.4
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.4
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.4
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.4
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.38
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.38
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.38
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.37
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.37
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.37
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.37
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.37
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.37
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.37
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.37
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.36
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.36
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.35
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.35
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.35
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.35
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.35
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.35
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.34
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.34
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.34
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.34
3p73_B	99	Beta-2-microglobulin; IG-like C1-type (immunoglobu	98.34
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.33
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.33
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.32
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.32
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.31
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.31
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.3
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.3
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.3
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.3
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.3
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.3
3jts_B	119	Beta-2-microglobulin; alpha helix, beta sheet, bet	98.29
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.29
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.29
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.29
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.27
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.26
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.26
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.26
3o81_A	119	Beta-2-microglobulin; IG-like C1-type (immunoglobu	98.26
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.26
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.26
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.25
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.25
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.24
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.24
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.24
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.23
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.23
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.22
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.22
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.22
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.22
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.21
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.21
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.2
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.2
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.19
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.19
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.19
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.18
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.18
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.18
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.17
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.17
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.16
3c5j_A	181	HLA class II histocompatibility antigen, DR alpha;	98.16
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.15
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.14
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.14
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.14
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.13
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.12
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.12
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.12
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.12
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.12
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.12
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.12
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.11
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.11
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.11
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.1
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.1
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.08
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.08
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.08
1uvq_A	197	HLA class II histocompatibility antigen; immunolog	98.08
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.08
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.08
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.08
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.07
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.07
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.06
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.06
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.06
1cd1_A	315	CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein,	98.05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.05
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.05
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.04
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.04
3c5j_B	190	MHC class II antigen; HLA, MHC class II, glycoprot	98.03
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.02
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.02
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.02
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.01
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.01
1uvq_B	198	HLA class II histocompatibility antigen; immunolog	98.01
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.0
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.0
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.99
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.99
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.98
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.97
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.97
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	97.96
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.96
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.96
1iak_A	199	MHC class II I-AK; histocompatibility antigen, pep	97.96
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.96
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.96
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.95
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.95
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.94
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.94
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.93
3usa_D	189	HLA class II histocompatibility antigen, DO beta;	97.93
2bc4_A	211	HLA class II histocompatibility antigen, DM alpha	97.93
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.93
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	97.93
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.92
2bc4_B	211	HLA class II histocompatibility antigen, DM beta c	97.92
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.92
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	97.92
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	97.91
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.91
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.9
3huj_A	284	R3G1, T-cell surface glycoprotein CD1D; CD1D, alph	97.9
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	97.9
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.9
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.9
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.89
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.89
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.89
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.89
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.89
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.88
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.88
3lqz_A	181	HLA class II histocompatibility antigen, DP alpha;	97.88
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.87
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.87
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.86
1onq_A	283	T-cell surface glycoprotein CD1A; protein-glycolip	97.86
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.86
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	97.85
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.84
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	97.84
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.84
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.84
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.83
4g43_A	275	MHC class I alpha chain 2; MHC I complex, narrow b	97.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.82
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.82
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.81
3g08_A	285	T-cell surface glycoprotein CD1D1; antigen present	97.81
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	97.81
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	97.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.8
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	97.8
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	97.79
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	97.79
1t7v_A	278	Zinc-alpha-2-glycoprotein; MHC class I homolog, PE	97.78
3p73_A	275	MHC RFP-Y class I alpha chain; IG-like C1-type (im	97.78
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.78
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.78
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	97.78
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.78
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.77
2p24_A	236	H-2 class II histocompatibility antigen, A-U ALPH;	97.77
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.77
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.76
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	97.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.76
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	97.76
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.75
1s7q_A	348	H-2KB, H-2 class I histocompatibility antigen, K-B	97.75
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.74
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.73
3usa_C	181	HLA class II histocompatibility antigen, DO alpha;	97.73
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.73
2h26_A	286	CD1B antigen, T-cell surface glycoprotein CD1B; li	97.73
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	97.73
2qrt_A	422	H-2KB, H-2 class I histocompatibility antigen K-B	97.73
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.72
4f7e_A	283	CD1D antigen, D polypeptide; protein-glycolipid co	97.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.72
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.72
3s6c_A	392	Beta-2-microglobulin, T-cell surface glycoprotein	97.71
3nwm_A	443	Peptide/beta-2microglobulin/MHC class I H-2KD CHI	97.7
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.7
4gup_A	271	Major histocompatibility complex class I-related p	97.7
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.7
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.69
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.68
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.68
1k5n_A	276	Major histocompatibility complex molecule HLA-B*2;	97.68
3d2u_A	281	UL18 protein; MHC class I homolog, disease mutatio	97.68
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	97.68
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.67
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.67
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.67
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.67
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	97.67
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	97.66
3m17_A	267	IGG receptor FCRN large subunit P51; immunoglobuli	97.66
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.66
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.65
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.65
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.64
4aen_A	207	HLA class II histocompatibility antigen, DR alpha;	97.64
1mhc_A	282	MHC class I antigen H2-M3; histocompatibility anti	97.62
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.62
1zs8_A	274	Histocompatibility 2, M region locus 10.5; major h	97.61
1u58_A	253	MHC-I homolog M144; MCMV, MHC-I homolog, immune sy	97.61
4ah2_B	229	HLA class II histocompatibility antigen gamma CHA	97.6
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.6
3bev_A	274	Major histocompatibility complex class I glycoprot	97.59
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.59
1r3h_A	260	MHC H2-TL-T10-129; class IB MHC, gammadelta T cell	97.59
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.58
2p24_B	259	H-2 class II histocompatibility antigen, A-U beta;	97.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	97.57
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.57
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.56
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	97.56
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.56
1pfc_A	113	IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcell	97.56
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	97.55
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	97.54
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.53
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.53
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.53
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.53
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.53
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.67
1a6z_A	275	HFE; HFE, hereditary hemochromatosis, MHC class I,	97.53
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.51
1fne_B	224	Protein (MHC class II I-EK, beta chain); histocomp	97.5
3fru_A	269	Neonatal FC receptor; complex (immunoglobulin-bind	97.5
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.49
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.48
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.47
3khq_A	133	B-cell antigen receptor complex-associated protei	97.47
3ov6_A	397	Beta-2-microglobulin, T-cell surface glycoprotein	97.47
2wy3_A	319	MHC class I polypeptide-related sequence B; immune	97.47
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.46
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	97.46
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.45
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.44
4d8p_B	250	Peptide from gamma-gliadin, linker, MHC class II;	97.44
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.43
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.43
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.43
3ov6_A	397	Beta-2-microglobulin, T-cell surface glycoprotein	97.42
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.42
2yf1_A	329	Major histocompatibility complex class I glycoPro	97.42
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.41
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.41
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.4
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.38
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.38
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.37
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.37
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.37
1xt5_A	135	Variable region-containing chitin-binding protein	97.37
3jvg_A	281	T-cell surface glycoprotein CD1A1 antigen; CD1, T-	97.36
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.35
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.35
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.34

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.43  E-value=4.3e-13  Score=63.55  Aligned_cols=47  Identities=28%  Similarity=0.587  Sum_probs=40.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .||.|...  +..+.+.+|+.+.|.|.+.|.|.|.+.|+| +++.+..+.
T Consensus        12 ~pP~f~~~--p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k-~g~~l~~~~   58 (107)
T 3knb_B           12 SPPCFLRF--PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASE   58 (107)
T ss_dssp             EEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             CCCEEEeC--CCcEEEeCCCcEEEEEEEEEecCCEEEEEE-Cccccccee
Confidence            47888876  677889999999999999999999999999 787776544

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.39  E-value=7.9e-13  Score=61.90  Aligned_cols=45  Identities=36%  Similarity=0.700  Sum_probs=38.7

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .||.+...  +.++.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+..
T Consensus         4 ~PP~i~~~--p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~   48 (100)
T 3knb_A            4 IPPKIEAL--PSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHS   48 (100)
T ss_dssp             EEEEECCC--CSEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCT
T ss_pred             CCCEEEeC--CCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CceEeee
Confidence            36777765  777889999999999999999999999999 7877654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.37  E-value=7e-13  Score=61.77  Aligned_cols=51  Identities=16%  Similarity=0.343  Sum_probs=42.2

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.+..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         3 l~~~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~   53 (103)
T 3qp3_A            3 FTLDHAPRITLR--MRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESS   53 (103)
T ss_dssp             TTTCEEEEEEEC--CCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             CCCCCCCEEEeC--CcceEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCC
Confidence            455678888776  667788999999999999999999999999 777765443

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=62.12  Aligned_cols=53  Identities=17%  Similarity=0.229  Sum_probs=44.0

Q ss_pred             eeEEEEcCC-EEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPP-DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.|.|..+| .+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         5 a~l~V~~~p~~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~~   58 (115)
T 2cr6_A            5 SSGLVQGRRVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANE   58 (115)
T ss_dssp             CCCCCCSSCCEEEEC--CCEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCSS
T ss_pred             EEEEEcCCCCeEecc--CccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCCC
Confidence            678888766 66655  677889999999999999999999999999 787776443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.30  E-value=5.8e-12  Score=58.27  Aligned_cols=48  Identities=21%  Similarity=0.544  Sum_probs=39.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +.+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         3 ~~~P~~~~~--p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~   50 (100)
T 2kdg_A            3 MGPPRFIQV--PENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDD   50 (100)
T ss_dssp             CEEEECCCC--CCCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCS
T ss_pred             CCCCeEEeC--CCCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCC
Confidence            457777665  667788999999999999999999999999 777765543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.29  E-value=1e-11  Score=61.76  Aligned_cols=51  Identities=25%  Similarity=0.519  Sum_probs=41.6

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.|..+|.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus        36 ~~v~~~P~~~~~--~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~   86 (154)
T 1fhg_A           36 EKPHVKPYFTKT--ILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESR   86 (154)
T ss_dssp             CCCCEEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSS
T ss_pred             ccCCCCCeEEcc--CCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCC
Confidence            445567888776  566788999999999999999999999999 777765443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-11  Score=55.89  Aligned_cols=44  Identities=36%  Similarity=0.609  Sum_probs=37.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         7 ~~P~i~~~--p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~   50 (100)
T 2edj_A            7 GPPIILQG--PANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFP   50 (100)
T ss_dssp             SSCEEEEC--CCCEEEESSSEEEECCEEECSSCCEEEEEE-SSSEES
T ss_pred             CCCEEEeC--cCCEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECC
Confidence            57888766  667788899999999999999999999999 777765

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.26  E-value=5.9e-12  Score=58.97  Aligned_cols=51  Identities=25%  Similarity=0.517  Sum_probs=33.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.+..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         4 ~v~~~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~-~~~~~~~~   54 (108)
T 3kvq_A            4 TVLERVAPTITGN--LENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVED   54 (108)
T ss_dssp             -------CCCBSC--CCCEEEETTCCEEEECBCC----CCEEEEE-SSSBCCCB
T ss_pred             eECccCCCceecC--CCCeEEeCCCeEEEEEECcCcCCCeEEEEE-CCeEcccC
Confidence            4566688988776  667888999999999999999999999999 66665433

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.26  E-value=2.8e-11  Score=55.81  Aligned_cols=48  Identities=19%  Similarity=0.424  Sum_probs=39.1

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+
T Consensus         4 ~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~~   51 (99)
T 1g1c_A            4 EAPKIFER--IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDR   51 (99)
T ss_dssp             EEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSS
T ss_pred             CCCceEec--CcceEEcCCCcEEEEEEEEEeCCCEEEEEE-CCEECCCCCC
Confidence            46777665  666788999999999999999999999999 7777654433

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.26  E-value=2.8e-11  Score=55.83  Aligned_cols=48  Identities=23%  Similarity=0.476  Sum_probs=39.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      .+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.....
T Consensus         4 ~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~~~   51 (99)
T 1u2h_A            4 APPTFKVS--LMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQR   51 (99)
T ss_dssp             EEEEEEEC--CCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCBTT
T ss_pred             CCCEEEEc--CCceEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCCC
Confidence            46777765  566788899999999999999999999999 7776654433

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.26  E-value=9.1e-12  Score=64.52  Aligned_cols=48  Identities=25%  Similarity=0.547  Sum_probs=38.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      +.|.|..||.+...  +....+.+|+.+.|.|.+.|.|.|.++|+++++.
T Consensus        99 ~~l~V~~p~~~~~~--~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~  146 (203)
T 4fa8_A           99 EHLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  146 (203)
T ss_dssp             EEEEEEEEEEEEEE--EEECCSSCSCCEEEEEEEEEESCCEEEECCC---
T ss_pred             EEEEecCCceeeec--ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCee
Confidence            46788888877765  6667788999999999999999999999885543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.25  E-value=9.4e-12  Score=59.15  Aligned_cols=45  Identities=36%  Similarity=0.787  Sum_probs=38.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         7 ~~pP~i~~~--p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~   51 (117)
T 2v9t_A            7 DFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVE   51 (117)
T ss_dssp             CEEEEEEEC--CCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECC
T ss_pred             cCCCeeEcC--CCCEEEcCCCcEEEEEECCccCCCeEEEEE-CCEecc
Confidence            468888776  667788999999999999999999999999 676654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.23  E-value=4.7e-11  Score=55.00  Aligned_cols=47  Identities=30%  Similarity=0.519  Sum_probs=38.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         5 ~~P~i~~~--~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~   51 (99)
T 3puc_A            5 SKPVIVTG--LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGG   51 (99)
T ss_dssp             EEEEEEEC--CCCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSSS
T ss_pred             CCCEEEec--CccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCCC
Confidence            56777766  667788999999999999999999999999 777665443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.21  E-value=9.4e-11  Score=55.47  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=38.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         6 ~pp~i~~~--~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~   51 (114)
T 2cqv_A            6 SGPQIIQF--PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQES   51 (114)
T ss_dssp             CCCEESCC--CCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCS
T ss_pred             CCCEEEeC--CCCeEEeCCCeEEEEEEEEcCCCCEEEEEE-CCEECcCC
Confidence            47888765  667888999999999999999999999999 67666543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=57.25  Aligned_cols=49  Identities=33%  Similarity=0.527  Sum_probs=40.8

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+.+..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         5 ~~~~~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~   53 (99)
T 2yr3_A            5 SSGMEVAPSFSSV--LKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQ   53 (99)
T ss_dssp             CSCCCEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCCCEEEE-SSSBCS
T ss_pred             cCCcccCCceeec--CCCCEEeCCCeEEEEEEEeeeCCCeEEEEE-CCEECc
Confidence            3456678888876  667789999999999999999999999999 666553

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=4.1e-11  Score=57.03  Aligned_cols=45  Identities=33%  Similarity=0.591  Sum_probs=37.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         7 ~pP~i~~~--p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~~   51 (118)
T 2eo9_A            7 GPPVIRQG--PVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVST   51 (118)
T ss_dssp             CSCCCSBC--CCCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCCT
T ss_pred             CCCEEEcC--CCCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcC
Confidence            46777665  666788999999999999999999999999 7766643

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.17  E-value=4.8e-11  Score=55.08  Aligned_cols=53  Identities=19%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV   62 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~   62 (69)
                      .||.+........+.+.+|+.+.|.|.+.| |.|.+.|+| +|+.+..+.++.+.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k-~g~~i~~~~~~~i~   55 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYK-DGQEVEESDFVVLE   55 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEE-TTSCCCCCSSCEEE
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEE-CCEEeeeeeeeeEE
Confidence            466665542222345678999999999966 999999999 88887655544443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=7.5e-11  Score=55.34  Aligned_cols=47  Identities=28%  Similarity=0.678  Sum_probs=39.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         8 ~~P~i~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~~~   54 (110)
T 2dm3_A            8 FRPHFLQA--PGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDS   54 (110)
T ss_dssp             CCCEEEEC--CCEEEEESSSCBCCEEEEECSSCCEEECBB-SSSBCCCCS
T ss_pred             CCCcEEeC--CCcEEEeCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCC
Confidence            57888776  677889999999999999999999999999 676665443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=55.28  Aligned_cols=45  Identities=24%  Similarity=0.566  Sum_probs=38.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        14 ~~p~f~~~--p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~   58 (116)
T 2kkq_A           14 RAPMFIYK--PQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQF   58 (116)
T ss_dssp             BCCCBSSC--CCCEEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCC
T ss_pred             CCCeEEeC--CCcEEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcC
Confidence            57777776  677889999999999999999999999999 7766654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.13  E-value=3.7e-10  Score=62.55  Aligned_cols=52  Identities=25%  Similarity=0.569  Sum_probs=44.2

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|..+|.+...  .....+..|..+.|.|.+.|.|.|.+.|++ +|..+...
T Consensus       288 ~~l~v~~~P~~~~~--~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~  339 (384)
T 3kld_A          288 GQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTR  339 (384)
T ss_dssp             EEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCEEEEEE-TTEECCCB
T ss_pred             EEEEEecCCccccC--CCceEecCCCCEEEEeECCccCCCeEEEEE-CCEECCCC
Confidence            56888889988776  666788899999999999999999999999 78776543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.13  E-value=1.3e-10  Score=53.21  Aligned_cols=43  Identities=30%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCC--cEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG--QEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~--~~~   53 (69)
                      .+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++  ..+
T Consensus         1 ~~P~i~~~--~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~~~~~~~   45 (93)
T 1wit_A            1 LKPKILTA--SRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAAL   45 (93)
T ss_dssp             CCCEECCC--CCEEEECTTBCCEEEEEEECCSSCEEEEEC-STTTCBC
T ss_pred             CCCeEEcC--CCceEEeCCCEEEEEEEEEEcCCCEEEEEE-CCCCccc
Confidence            36887655  667889999999999999999999999999 56  554

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=54.19  Aligned_cols=45  Identities=27%  Similarity=0.507  Sum_probs=37.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         7 ~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~   51 (110)
T 2dm2_A            7 GAPFFEMK--LKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISP   51 (110)
T ss_dssp             CCCCBSSC--CCCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCCT
T ss_pred             CCCEEEec--CcCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCC
Confidence            57777665  666788999999999999999999999999 7766654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.09  E-value=8.2e-10  Score=58.56  Aligned_cols=54  Identities=22%  Similarity=0.480  Sum_probs=44.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      ..|.|..+|.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+.....
T Consensus       185 ~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~  238 (284)
T 2rik_A          185 TSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKK  238 (284)
T ss_dssp             EEEEEECCCBCCSC--CCCEEECTTCCEEEEEECBSSSCCEEEEEE-TTEEECBTTT
T ss_pred             EEEEEecCCcceeC--CCcceecCCCeEEEEEEEEecCCCEEEEEE-CCEECcCCCC
Confidence            46788889988765  556778899999999999999999999999 7877765443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.09  E-value=5.5e-10  Score=57.42  Aligned_cols=51  Identities=25%  Similarity=0.526  Sum_probs=36.5

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.....  ........|+.+.|.|.+.|.|.|.+.|++++++.+.
T Consensus       109 ~~l~V~~~~~~~~~--~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C          109 ITVKVNAPYNKINQ--RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             EEEEEEBCCCCCEE--EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred             EEEEEECCCCCCCc--eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence            35677766643322  2222567899999999999999999999994466553

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.08  E-value=3e-09  Score=53.69  Aligned_cols=51  Identities=27%  Similarity=0.563  Sum_probs=42.2

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC-CCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE-DGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~-~~~~~~   54 (69)
                      ..|.|..+|.+...  +....+..|..+.|.|.+.|.|.|.+.|++. ++..+.
T Consensus        85 ~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           85 ATIEVKAAPDITGH--KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             EEEEEECCCEEEEE--CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             EEEEEecCCccccc--CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence            46888899998876  5567788999999999999999999999984 455543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.07  E-value=1.2e-09  Score=49.73  Aligned_cols=44  Identities=27%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ++.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         3 ~~~i~~~--p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~   46 (91)
T 3bfo_A            3 KLQICVE--PTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTH   46 (91)
T ss_dssp             CCEEEEC--CCCEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTT
T ss_pred             ceEEEEC--CCccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCc
Confidence            3455554  555678899999999999999999999999 7766543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.07  E-value=5e-10  Score=64.77  Aligned_cols=53  Identities=23%  Similarity=0.496  Sum_probs=44.6

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +.|.|+.+|.+...  +......+|..+.|.|.+.|.|.|.+.|+| ++..+..+.
T Consensus       377 ~~l~V~~~P~~~~~--~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~  429 (570)
T 3b43_A          377 TSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGK  429 (570)
T ss_dssp             EEECEECCCEECSC--CCCEEECTTCCEEEEEEEESSSSCCCEEEE-TTEECCSSS
T ss_pred             EEEEecCCCeeecC--CCceeecCCCEEEEEEEEecCCCCEEEEEE-CCEECcCCC
Confidence            56888999998776  566778899999999999999999999999 777765443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.06  E-value=9.7e-10  Score=55.37  Aligned_cols=50  Identities=22%  Similarity=0.377  Sum_probs=41.7

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        93 ~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~  142 (191)
T 1epf_A           93 VNVKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVI  142 (191)
T ss_dssp             EEEEEECCSEEEEC--CSSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGG
T ss_pred             EEEEeecCceEecC--CCcEeecCCCeEEEEEEECCCCCCEEEEEE-CCEEee
Confidence            35677788888776  556778899999999999999999999999 776654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.05  E-value=7.1e-10  Score=51.17  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=37.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCc
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN   59 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~   59 (69)
                      +|.+...  +.+..+.+|+.+.|.|.+.+ |.|.+.|+| +|..+..+.++
T Consensus         5 ~~~~~~~--~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k-~g~~i~~~~~~   51 (93)
T 1waa_A            5 LIEVEKP--LYGVEVFVGETAHFEIELSE-PDVHGQWKL-KGQPLAASPDC   51 (93)
T ss_dssp             CCCEEEC--CCCEEEETTSCEEEEEEESS-SSCCCEEEE-TTEECCCBTTE
T ss_pred             CcEeecc--CcceEEeCCCCEEEEEEECC-CCCeEEEEE-CCEECcCCCCE
Confidence            5677665  66788999999999999987 558899999 88877654443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.05  E-value=1.3e-09  Score=55.17  Aligned_cols=50  Identities=28%  Similarity=0.591  Sum_probs=42.5

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  +....+.+|..+.|.|.+.|.|.| .+.|++ ++..+.
T Consensus        99 ~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~~  149 (195)
T 2c5d_C           99 GYVGLEGLPYFLEE--PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLA  149 (195)
T ss_dssp             EEEEECCSCEEEEC--CCCEEECTTCCEEEEEEEECSSCCCEEEEEE-SSCBSS
T ss_pred             EEEEEecCCeEEcC--CCcEEEcCCCEEEEEeECCCCCCCCEEEEEE-CCEecc
Confidence            56888899988776  556788899999999999999999 999999 666654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=9.1e-10  Score=52.36  Aligned_cols=47  Identities=26%  Similarity=0.535  Sum_probs=36.7

Q ss_pred             EcCCEEeec-CCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           7 VVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~-~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+|.+... .......+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~   66 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLD   66 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECC
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEE-CCEECC
Confidence            356776432 12456788899999999999999999999999 776664

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.04  E-value=6.1e-10  Score=52.09  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |++||++...  ..   ...+..+.|.|.+.|.|.|.++|++ +|+.+..+.
T Consensus         1 V~~pP~i~~~--~~---~~~~~~~~~~c~v~G~P~P~i~W~k-~g~~l~~~~   46 (103)
T 1wwb_X            1 VHFAPTITFL--ES---PTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESK   46 (103)
T ss_dssp             CCCCCCCCCC--CC---CCCCCEEEEEEEEECSSCCEEEEEE-TTEEECCCS
T ss_pred             CCCCCEEEec--cC---ceECcEEEEEEEEEEeCCCEEEEEE-CCEECCCCC
Confidence            4578886543  21   2457889999999999999999999 787776543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=54.68  Aligned_cols=53  Identities=34%  Similarity=0.590  Sum_probs=40.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.|..+|.+..........+..|..+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus        90 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~-~g~~~~~~  142 (189)
T 2v5t_A           90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEEN  142 (189)
T ss_dssp             EEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEE-TTEECCCS
T ss_pred             EEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEE-CCEECcCC
Confidence            456667777765422335567789999999999999999999999 77766543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.03  E-value=3.9e-10  Score=51.27  Aligned_cols=43  Identities=21%  Similarity=0.514  Sum_probs=34.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV   62 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~   62 (69)
                      ...+.+.+|+.+.|.|.+.| |.|.+.|+| +|+.+..+.++.+.
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k-~g~~l~~~~~~~~~   45 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYK-DGERLASQGRVQLE   45 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEE-TTEECCCCSSEEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEE-CCEEccccccEEEe
Confidence            34678889999999999977 999999999 88888655544333

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.02  E-value=3e-09  Score=53.28  Aligned_cols=49  Identities=33%  Similarity=0.560  Sum_probs=42.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~   53 (69)
                      ..|.|..+|.+...  +....+..|..+.|.|.+.|.|.| .+.|++ ++..+
T Consensus        91 ~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~  140 (182)
T 1rhf_A           91 VWLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKI  140 (182)
T ss_dssp             EEEEEECSCEEEEC--CCCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEEC
T ss_pred             EEEEEecCCeEEec--CcceEecCCCEEEEEeEecCCCCCCEEEEEc-CCeEC
Confidence            46888899998776  556788899999999999999999 999999 66655

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.02  E-value=2.9e-09  Score=53.67  Aligned_cols=52  Identities=27%  Similarity=0.517  Sum_probs=40.7

Q ss_pred             eEEEE---cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           3 YLDVV---VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         3 ~l~V~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .|.|.   .+|.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus        94 ~l~v~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~  148 (194)
T 2a38_A           94 ELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQSSL  148 (194)
T ss_dssp             EEEEECCCEEEEEEEC--CCCEEECTTEEEEEEEEEEEESCCEEEEEE-TTEECCCSS
T ss_pred             EEEEccCCCCCEEEeC--CccEEEcCCCEEEEEEEEEEecCCeEEEEE-CCEECCCCC
Confidence            56666   46666655  556778899999999999999999999999 777665433

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=61.56  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|..+|.+...+......+.+|+.+.|.|.+.|.|.|.++|+| +|..+...
T Consensus       317 ~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~  370 (423)
T 3qs7_E          317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCE  370 (423)
T ss_dssp             EEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEEECB
T ss_pred             EEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE-CCEECCCc
Confidence            5788998998766533345677889999999999999999999999 88888644

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.01  E-value=1.8e-09  Score=54.33  Aligned_cols=52  Identities=25%  Similarity=0.509  Sum_probs=42.7

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus        93 ~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~  144 (192)
T 2iep_A           93 GALQVKMKPKITRP--PINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALREN  144 (192)
T ss_dssp             EEEEEEEEEEEEEC--CCCEEEETTSCEEECCEEEEESCCEEEEEE-TTEECCCC
T ss_pred             EEEEEEeCCccccC--CcceEEeCCCcEEEEEEEeccCCceEEEEe-CCEEccCC
Confidence            35778888888765  556778899999999999999999999999 77666543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.01  E-value=3e-09  Score=58.48  Aligned_cols=52  Identities=21%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ +|..+...
T Consensus       300 ~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~i~~~  351 (388)
T 2v5m_A          300 TVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHS  351 (388)
T ss_dssp             EEEEEEEEEEEEEE--SSEEEECTTSCEEEEEEEEEECCCEEEEEE-TTEECSCC
T ss_pred             EEEEEeCCCccccC--CCcEEecCCCCEEEEEEeccccCCeEEEEE-CCEECccC
Confidence            46788888887765  566788899999999999999999999999 77776543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.00  E-value=2.7e-10  Score=53.50  Aligned_cols=44  Identities=30%  Similarity=0.655  Sum_probs=37.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        13 ~~~~i~~~--p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~g~~l~   56 (106)
T 1nct_A           13 LAARILTK--PRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLS   56 (106)
T ss_dssp             CCCEEEEC--CCCEEESSSSCEECCEEEECSSCCBCCBCS-SSSCCT
T ss_pred             CCCEEEEC--CCCEEEeCCCcEEEEEEEEEcCCCEEEEEE-CCEECC
Confidence            45777776  677889999999999999999999999999 666554

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.99  E-value=9.2e-10  Score=51.12  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=36.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.| +.|++ ++..+...
T Consensus         7 ~pp~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~~~   51 (103)
T 2e7b_A            7 GPVRFQEA--LKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPG   51 (103)
T ss_dssp             CCCCCTBC--CCCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCCCS
T ss_pred             CCCEEEec--CccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECCCC
Confidence            46666655  667888999999999999999999 99999 67666433

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.97  E-value=3.7e-09  Score=58.11  Aligned_cols=52  Identities=35%  Similarity=0.654  Sum_probs=43.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ +|..+...
T Consensus       287 ~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~  338 (382)
T 1cs6_A          287 GRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQ  338 (382)
T ss_dssp             EEEEEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCC
T ss_pred             EEEEEecCCCcccC--CCccEEcCCCeEEEEEEeeeecCCEEEEEE-CCEECCCC
Confidence            46778888988776  556778899999999999999999999999 77776543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.97  E-value=1.9e-09  Score=62.36  Aligned_cols=48  Identities=25%  Similarity=0.519  Sum_probs=40.7

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      |+.||.+...  ...+.+..|+.+.|.|.+.|.|.|.+.|+| ++..+...
T Consensus         2 v~~pP~f~~~--~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k-~g~~l~~~   49 (570)
T 3b43_A            2 AMEPPYFIEP--LEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSA   49 (570)
T ss_dssp             CCCCCEEEEC--CCCEEECTTSCEEEEEEEESSSSCEEEEEC-SSSBCCCC
T ss_pred             CCCCCcceEE--CCceEEcCCCEEEEEEEEccCCCCEEEEEE-CCEEccCC
Confidence            4578998876  667889999999999999999999999999 77766543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.97  E-value=4.6e-09  Score=48.22  Aligned_cols=39  Identities=28%  Similarity=0.547  Sum_probs=32.6

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~~~~~~~~~   57 (69)
                      +....+.+|+.+.|.|.+.|. |.|.+.|++ ++..+....
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~-~~~~~~~~~   47 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENSE   47 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEE-TTEECCSSS
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEE-CCEECcCCC
Confidence            566788899999999999997 999999999 776665433

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=9.7e-10  Score=51.25  Aligned_cols=45  Identities=20%  Similarity=0.277  Sum_probs=36.7

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +|.+...  +.+..+.+|+.+.|.|.+  .|.|.+.|+| +|..+....+
T Consensus         7 p~~~~~~--~~~~~v~~G~~v~l~C~v--~p~p~v~W~k-~g~~l~~~~r   51 (100)
T 2yuz_A            7 GLKILTP--LTDQTVNLGKEICLKCEI--SENIPGKWTK-NGLPVQESDR   51 (100)
T ss_dssp             CCCCSBC--CCCEEEETTSCCCEEEEC--SSCCCEEEEE-TTEECCCCSS
T ss_pred             CCEEecc--CCceEEcCCCCEEEEEEe--CCCCeEEEEE-CCEECCCCCc
Confidence            5666655  677889999999999999  8999999999 8877765443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.97  E-value=6.9e-09  Score=53.21  Aligned_cols=51  Identities=25%  Similarity=0.486  Sum_probs=40.3

Q ss_pred             eeEEEEcC-------CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVP-------PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..|.|..+       |.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        96 ~~l~V~~~~~~~~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~-~~~~~~~  153 (212)
T 2yd1_A           96 ATLTIYEGDKTPAGFPVITQG--PGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDM  153 (212)
T ss_dssp             EEEEEECTTCSCTTCCEEEEC--CCCEEEETTCCEEECCEEECSSCCEEEEEE-TTEECCT
T ss_pred             EEEEEecccCCCCCCCeeEeC--CCceEeecCCeEEEEEEeccCCCCeEEEEE-CCeEccc
Confidence            35667655       677665  555678889999999999999999999999 7766654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.97  E-value=7.4e-09  Score=52.33  Aligned_cols=55  Identities=25%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             eeEEEEcCCEEeecC---CCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPPDILNEE---SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~---~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ..|.|..+|.+....   .+....+..|..+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~  149 (197)
T 2j8h_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNG  149 (197)
T ss_dssp             EEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEE-SSCEECSSS
T ss_pred             EEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEE-CCEEeecCC
Confidence            356777777654321   0245667889999999999999999999999 777776443

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.96  E-value=1.2e-09  Score=50.18  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=34.9

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.| |.+.|++ ++..+..
T Consensus         9 pp~~~~~--~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k-~g~~~~~   51 (95)
T 2ckn_A            9 PWGVPVE--VESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVE   51 (95)
T ss_dssp             SCCBTTB--BCCEEECTTSCEEEECCEESSC-CEEEEEB-TTBCCCC
T ss_pred             CCEEEcC--cceEEEcCCCeEEEEEECCCCC-CceEEEE-CCEecCC
Confidence            4555544  6677889999999999999998 8999999 7776653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.96  E-value=4.5e-09  Score=52.93  Aligned_cols=47  Identities=34%  Similarity=0.596  Sum_probs=39.3

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         5 ~~~P~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~   51 (197)
T 3lcy_A            5 GEAPGIRKE--MKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQS   51 (197)
T ss_dssp             CEEEEEEEC--CCCEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCC
T ss_pred             CCCCccccc--CCceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCC
Confidence            467888776  667888999999999999999999999999 77766543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.96  E-value=3.3e-09  Score=58.50  Aligned_cols=51  Identities=35%  Similarity=0.668  Sum_probs=42.9

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..|.|..+|.+...  +....+.+|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus       305 ~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~g~~~~~  355 (403)
T 3laf_A          305 AELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIP  355 (403)
T ss_dssp             EEEEEEEEEEEEEC--CCCEECCTTCCEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             EEEEEECCCcEeec--CcceEEecCCeEEEEEEEeeccCCEEEEEE-CCEECCC
Confidence            46778889988776  666778899999999999999999999999 7766543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.95  E-value=2e-09  Score=49.60  Aligned_cols=46  Identities=30%  Similarity=0.569  Sum_probs=35.6

Q ss_pred             CCEEeecCC--CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEES--SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~--~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...+.  .....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~~~~   51 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQ   51 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCG
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEE-CCEEccc
Confidence            566654321  345678899999999999999999999999 7766643

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.95  E-value=1.8e-09  Score=52.47  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=35.4

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      ...+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++.
T Consensus        18 ~~~pP~~~~~--p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~~~   60 (137)
T 3qr2_A           18 GSHMAGFVQA--PLSQQRWVGGSVELHCEAVGSPVPEIQWWF-EGQ   60 (137)
T ss_dssp             ---CCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEEE-EES
T ss_pred             CCCCCeEEcC--CCCEEEeCCCCEEEEEEEeeecCCeEEEEE-CCC
Confidence            3478898877  677888899999999999999999999999 443

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.95  E-value=9.2e-11  Score=56.14  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=41.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~   55 (69)
                      .+|.|+++|.+..   +....+.+|+.+.|.|.+.|.|.|. +.|++ ++..+..
T Consensus         7 ~~l~V~~~P~i~~---~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~-~~~~l~~   57 (122)
T 2cry_A            7 GTLTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLES   57 (122)
T ss_dssp             CCCCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEECS
T ss_pred             EEEEEecCCCccC---CCeEEEecCCCEEEEEEEeecCCCcEeEEEE-CCEEccC
Confidence            4678889998866   3456678999999999999999997 99999 6766653

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.95  E-value=2e-09  Score=59.21  Aligned_cols=47  Identities=32%  Similarity=0.531  Sum_probs=37.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...+ ...+.+.+|..+.|.|.+.|.|.|.+.|++.+|..+..
T Consensus         2 ~~P~f~~~p-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~   48 (388)
T 2v5m_A            2 KGPVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD   48 (388)
T ss_dssp             EEEEEEECC-CSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCC
T ss_pred             CCCchhhCC-CceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCcccc
Confidence            467777763 33466788999999999999999999999956666543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.94  E-value=7.7e-09  Score=54.92  Aligned_cols=52  Identities=35%  Similarity=0.705  Sum_probs=41.0

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .|.|..+|.+..........+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus       188 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~-~g~~~~~  239 (291)
T 1qz1_A          188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIEN  239 (291)
T ss_dssp             EEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECCC
T ss_pred             EEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEE-CCEECcC
Confidence            466777888765433445678889999999999999999999999 7776654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.94  E-value=1.8e-09  Score=59.49  Aligned_cols=50  Identities=28%  Similarity=0.620  Sum_probs=42.6

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus       305 ~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~  354 (404)
T 3p3y_A          305 ISVRVKAAPYWLDE--PKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQ  354 (404)
T ss_dssp             EEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCEEEEEE-TTEEGG
T ss_pred             EEEEEeCCCeeecc--CCcceeecCCcEEEEEEccccCCCceEEEE-CCEecC
Confidence            46778888988776  666788899999999999999999999999 776654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.93  E-value=7e-09  Score=53.20  Aligned_cols=44  Identities=30%  Similarity=0.779  Sum_probs=38.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         5 ~pP~~~~~--p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~   48 (212)
T 2yd1_A            5 HPPEIIRK--PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVS   48 (212)
T ss_dssp             CCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEcC--CCceEEecCCEEEEEEEEccCCCCeEEEEE-CCEECC
Confidence            57888876  667788999999999999999999999999 777664

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.93  E-value=3.3e-10  Score=63.52  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=41.9

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ..|.|+++|.+...+.+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus       361 ~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~-~g~~~  411 (450)
T 1z7z_I          361 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFP  411 (450)
T ss_dssp             EECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTTEE
T ss_pred             EEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEE-CCccc
Confidence            4677888998876533467788899999999999999999999999 66533

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.93  E-value=1.1e-09  Score=51.68  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             eeEEEEc-CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVV-PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +.|.|.. +|.+...  +....+.+|+.+.|.|.+.|.  |.+.|++ ++..+....
T Consensus        11 ~~l~V~~~pp~~~~~--~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~l~~~~   62 (113)
T 2edh_A           11 AMLTVRALPIKFTEG--LRNEEATEGATAVLRCELSKM--APVEWWK-GHETLRDGD   62 (113)
T ss_dssp             CCCCCCCSCCCEEEC--CCCCEECTTSCEEEEEEESSC--CCCEEEE-SSSBCCCSS
T ss_pred             EEEEEEcCCCccccc--CCceEEeCCCeEEEEEEECCC--CcEEEEE-CCEECCCCC
Confidence            4677774 4577665  666788999999999999775  7899999 777665443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.93  E-value=1.7e-09  Score=57.41  Aligned_cols=53  Identities=34%  Similarity=0.590  Sum_probs=40.2

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.|..+|.+...+......+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus       186 ~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~  238 (291)
T 2wim_A          186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEEN  238 (291)
T ss_dssp             EEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEE-TTEECCCT
T ss_pred             EEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEE-CCEECcCC
Confidence            456778887765422224457789999999999999999999999 77776543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.93  E-value=1.5e-08  Score=51.00  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=40.7

Q ss_pred             eeEEEEcCCEEeec-CCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p~~~~~-~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ..|.|..+|.+... +......+..|..+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~  148 (197)
T 3lcy_A           93 SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSE  148 (197)
T ss_dssp             EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeE-CCEECCCCC
Confidence            35667777765432 22345667889999999999999999999999 777665443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.93  E-value=1.1e-09  Score=52.06  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=35.0

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .|.|+++|.+...  ...   .......|.|.+.|.|.|.+.|+| +|+.+....
T Consensus         2 ~L~V~~pP~i~~~--~~~---~~~~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~   50 (118)
T 1wwc_A            2 ALTVYYPPRVVSL--EEP---ELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESK   50 (118)
T ss_dssp             --CCCCCCCCCCC--CCC---CCCCEEEEEEEEECSSCCEEEEEE-TTEECCCSS
T ss_pred             EEEEecCCceecc--CCC---eeccceEEEEEeeeeCCCeEEEEE-CCEECCCCC
Confidence            4778889987654  211   123677899999999999999999 777765443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.92  E-value=2.8e-09  Score=54.32  Aligned_cols=50  Identities=36%  Similarity=0.761  Sum_probs=38.0

Q ss_pred             eeEEEE-cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVV-VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |.|.+. .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         1 g~l~~~~~pp~i~~~--p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~   51 (212)
T 2v9r_A            1 GSLRQEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVE   51 (212)
T ss_dssp             -----CCEEEEEEEC--CCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECC
T ss_pred             CCcCcccCCcceecC--CCceEEeCCCcEEEEEEcCCCCCCEEEEEE-CCEEee
Confidence            345555 57777776  667889999999999999999999999999 666654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.92  E-value=3.3e-09  Score=54.47  Aligned_cols=46  Identities=30%  Similarity=0.727  Sum_probs=38.3

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         3 ~~~~P~~~~~--p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k-~~~~~~   48 (212)
T 2yd6_A            3 GETPPRFTRT--PVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVS   48 (212)
T ss_dssp             -CEEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECC
T ss_pred             CCCCCeEEeC--cceeEEecCCeEEEEEEEeeCCCCEEEEEE-CCcCCC
Confidence            3467888876  666788899999999999999999999999 676654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.92  E-value=2e-09  Score=50.32  Aligned_cols=46  Identities=13%  Similarity=0.285  Sum_probs=37.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.| +.|++ ++..+....
T Consensus         7 ~~p~~~~~--~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k-~g~~~~~~~   52 (106)
T 2dlt_A            7 GQLEVLQD--IADLTVKAAEQAVFKCEVSDEKVT-GKWYK-NGVEVRPSK   52 (106)
T ss_dssp             CCCCEEEC--CCCEEEESSCCEECCCEESCSSCE-EEEEE-SSCBCCCCS
T ss_pred             CCCEEecC--CCCeEEeCCCeEEEEEEEcCCCcc-eEEEc-CCEECcCCC
Confidence            36677766  667888999999999999999988 99999 776665433

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.90  E-value=3.9e-09  Score=58.08  Aligned_cols=50  Identities=24%  Similarity=0.586  Sum_probs=42.2

Q ss_pred             eeEEEEcCCEEeecCCCce-EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSD-IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~-~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  +.. ..+..|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus       301 ~~l~V~~~P~~~~~--~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~  351 (395)
T 1bih_A          301 LKLTVVSAPKYEQK--PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLS  351 (395)
T ss_dssp             EEEEEEEEEEEEEC--CCSEEEECTTSCEEEECEEEEESCCCCEEEE-TTEECC
T ss_pred             EEEEEEcCCccccC--CCcceEecCCCeEEEEEEECcccCCeeEEEE-CCEECC
Confidence            46888899998876  444 678899999999999999999999999 777654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.90  E-value=2.2e-09  Score=59.45  Aligned_cols=44  Identities=41%  Similarity=0.823  Sum_probs=33.3

Q ss_pred             CCEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  +.....   .+|+.+.|.|.+.|.|.|.++|+| +|..+..
T Consensus         5 ~P~f~~~--P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k-~g~~l~~   51 (384)
T 3kld_A            5 GPVFVQE--PSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDI   51 (384)
T ss_dssp             EEEEEEC--CCCEEEETTCSCSEEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             CCEEEeC--CcceEeecCCCCCeEEEEeEecCCCCCEEEEEE-CCEECcC
Confidence            3555555  333333   478999999999999999999999 7877654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.90  E-value=5.5e-09  Score=57.48  Aligned_cols=51  Identities=27%  Similarity=0.546  Sum_probs=42.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|+.+|.+...  .....+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        93 ~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~l~~  143 (389)
T 2jll_A           93 MYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPA  143 (389)
T ss_dssp             EEEEEEEEEEECCS--CCEEEECTTCCEEEEECEEEESCCEEEEEE-TTEESSC
T ss_pred             EEEEEEeCCEEecC--cceEEeccCCEEEEEEEEEecCCCeEEEEE-CCccCCc
Confidence            57888899988764  444567899999999999999999999999 7766643

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.89  E-value=1e-08  Score=51.77  Aligned_cols=45  Identities=33%  Similarity=0.680  Sum_probs=38.1

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         3 ~~P~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~   47 (197)
T 2j8h_A            3 MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA   47 (197)
T ss_dssp             CCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCC
T ss_pred             CCCEEEEc--CCccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECcc
Confidence            47888776  667888999999999999999999999999 7766654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.89  E-value=4.9e-09  Score=57.71  Aligned_cols=50  Identities=22%  Similarity=0.406  Sum_probs=40.1

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEec
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~   56 (69)
                      |.|..+|.+...  +....+.+|+.+.|.|.+.| .|.|.+.|++ +|..+...
T Consensus         1 l~v~~~P~~~~~--p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k-~g~~~~~~   51 (395)
T 1bih_A            1 LPVDKYPVLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQ   51 (395)
T ss_dssp             ----CCCEECCC--CSEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTT
T ss_pred             CCcCCCCEeecC--CCceEEeCCCEEEEEEEEecCCCCceEEEEE-CCcCcccc
Confidence            467889999877  77788899999999999999 9999999999 77766543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.6e-09  Score=49.57  Aligned_cols=45  Identities=20%  Similarity=0.406  Sum_probs=36.1

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .||.+...  +....+.+|+.+.|.|.+.| |.|.+.|++ ++..+...
T Consensus         7 ~pp~~~~~--~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~~~~~   51 (103)
T 2edf_A            7 GPAAIIKP--LEDQWVAPGEDVELRCELSR-AGTPVHWLK-DRKAIRKS   51 (103)
T ss_dssp             CCCCEEEC--CCCEEECTTSCEEECCEESS-SSCCCCEEE-SSCBCCCS
T ss_pred             CCcEEEec--CCccEEcCCCCEEEEEEEeC-CCCcEEEEE-CCEEccCC
Confidence            45666665  66688899999999999998 889999999 77666443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.89  E-value=2.4e-09  Score=56.60  Aligned_cols=48  Identities=25%  Similarity=0.449  Sum_probs=39.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      .|.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.+.|++ ++.
T Consensus       177 ~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~-~~~  224 (265)
T 2oz4_A          177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGT  224 (265)
T ss_dssp             EEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTT
T ss_pred             EEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEE-CCc
Confidence            577888888765433456778899999999999999999999999 555

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.88  E-value=3.5e-08  Score=52.30  Aligned_cols=52  Identities=23%  Similarity=0.446  Sum_probs=41.9

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|..+|.+.... .....+.+|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        91 ~~l~V~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~  142 (284)
T 2rik_A           91 AQLGVQEPPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQE  142 (284)
T ss_dssp             EEEEEECCCEEEECC-CSEEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCC
T ss_pred             EEEEccCCCcccccC-CCceEecCCceEEEEEEEeeeCCCEEEEEE-CCEECcC
Confidence            467888899877652 445567899999999999999999999999 7766543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.8e-09  Score=50.03  Aligned_cols=45  Identities=16%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.| |.+.|++ ++..+...
T Consensus         7 ~p~~~~~~--~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k-~g~~i~~~   51 (101)
T 2edk_A            7 GPVLIVTP--LEDQQVFVGDRVEMAVEVSEEG-AQVMWMK-NGVELTRE   51 (101)
T ss_dssp             CCCCEEEC--CCCEEEESSCCCBCCEEESCSS-CCCEEEE-SSCBCCCS
T ss_pred             CCCEEEec--CCceEEcCCCCEEEEEEEeCCC-CEEEEEE-CCEECCCC
Confidence            35666665  6668889999999999999999 9999999 77766543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.87  E-value=9.5e-09  Score=51.56  Aligned_cols=44  Identities=27%  Similarity=0.480  Sum_probs=38.2

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeec-CCeEEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYP-RPHITWKR   47 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~   47 (69)
                      ..|.|+.+|.+...  +....+.+|+.+.|.|.+.|.| .|.+.|++
T Consensus        76 ~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~  120 (184)
T 3b5h_A           76 ANIQLHGPPRVKAV--KSSEHINEGETAMLVCKSESVPPVTDWAWYK  120 (184)
T ss_dssp             EEEEECCSCCCEES--CSEEEECTTSCEEEEEECCCSSCCCEEEEEE
T ss_pred             EEEEEecCCceeec--CCCcEEcCCCcEEEEEEECCCCCCCeEEEEE
Confidence            46888899988776  5566788999999999999999 89999999

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.87  E-value=4e-09  Score=53.06  Aligned_cols=46  Identities=24%  Similarity=0.473  Sum_probs=37.5

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         5 ~~~P~i~~~--~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~   50 (192)
T 2iep_A            5 PKAPVITTP--LETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKL   50 (192)
T ss_dssp             CEEEEESSC--CCEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCT
T ss_pred             CCCceeecC--ccceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEccc
Confidence            356777665  666788899999999999999999999999 6766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.87  E-value=3.8e-08  Score=50.80  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      |.+...  +....+..|..+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus       119 p~~~~~--~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~~~~~~~~  162 (218)
T 3k0w_A          119 LQICVE--PTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE  162 (218)
T ss_dssp             CEEEEC--CCCEEECTTCCEEEECEEEBSSCCEEEEEE-TTEECTTC
T ss_pred             ceEEEC--CCceeecCCCcEEEEEEecccCCCeEEEEE-CCEECCCC
Confidence            566555  556778899999999999999999999999 77666433

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.87  E-value=1.2e-08  Score=51.88  Aligned_cols=31  Identities=29%  Similarity=0.963  Sum_probs=26.5

Q ss_pred             cCCCeEEEEeeEe-eecCCeEEEEeCCCcEEEe
Q psy4606          24 PEGGTIKLVCKAK-GYPRPHITWKREDGQEIII   55 (69)
Q Consensus        24 ~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..|+.+.|.|.+. |.|.|.++|++ +|+.+..
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k-~g~~l~~  150 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLE-NGEELNA  150 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEE-SSCEECC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEE-CCEECcc
Confidence            4588899999995 89999999999 7877654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.86  E-value=9.3e-09  Score=59.52  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|..+|.+...+......+.+|+.+.|.|.+.|.|.|.+.|+| +|+.+...
T Consensus       317 ~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~g~~l~~~  370 (527)
T 3qs9_E          317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCE  370 (527)
T ss_dssp             EEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEEECB
T ss_pred             EEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcCC
Confidence            4678888887765432345667889999999999999999999999 88877543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=5.5e-09  Score=49.91  Aligned_cols=44  Identities=16%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +|.+...  ..+..+.+|+.+.|.|.+.+  .|.+.|+| ||+.+..+.
T Consensus         8 ~~~~~~~--l~d~~v~eG~~a~f~C~vs~--~p~v~W~k-nG~~l~~~~   51 (112)
T 2e6q_A            8 TARLVAG--LEDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEELKSNE   51 (112)
T ss_dssp             CCCEEEC--CCCEEEETTCEEEEEEEESS--CCCCEEEE-SSCBCCSSC
T ss_pred             CcEEecC--CCCeEEcCCCcEEEEEEECC--CCeEEEEE-CCEECccCc
Confidence            3566665  77888999999999999998  88899999 888886554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2.1e-09  Score=49.95  Aligned_cols=45  Identities=22%  Similarity=0.391  Sum_probs=34.8

Q ss_pred             cCCEEeecCCCce---EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSD---IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~---~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +..   +.+.+|+.+.|.|.+.|.|.| +.|++ +++.+...
T Consensus         6 ~~P~~~~~--p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~g~~~~~~   53 (104)
T 2e6p_A            6 SGPVHILS--PQDKVSLTFTTSERVVLTCELSRVDFP-ATWYK-DGQKVEES   53 (104)
T ss_dssp             SSSCCCCB--CCSCEEEEEESSSCEECCEECSSTTCC-CEEEE-TTEECCCB
T ss_pred             CCCCEEEC--CCCCccEEEeCCCcEEEEEEecCCCCc-cEEee-CCEECCCC
Confidence            35655554  333   678899999999999999999 99999 77766543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.86  E-value=9.5e-09  Score=52.67  Aligned_cols=45  Identities=29%  Similarity=0.691  Sum_probs=38.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         8 ~~P~i~~~--p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~g~~~~~   52 (217)
T 2vr9_A            8 QSPRIIEH--PTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVST   52 (217)
T ss_dssp             CCCEEEEC--CCCEEECTTSCEEECCEEECSSCCEEEEEE-TTEECCC
T ss_pred             CCCEEecC--CCceEEeCCCcEEEEEEcCCCCCCeEEEEE-CCcCccC
Confidence            57888776  667889999999999999999999999999 7766643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.86  E-value=1.9e-08  Score=51.61  Aligned_cols=50  Identities=28%  Similarity=0.402  Sum_probs=38.0

Q ss_pred             eEEEEcC-------CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           3 YLDVVVP-------PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .|.|..+       |.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        95 ~l~V~~~~~~~~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~g~~l~~  151 (212)
T 2yd6_A           95 RLTVLREDQIPRGFPTIDMG--PQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDT  151 (212)
T ss_dssp             EEEEECGGGCCTTCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEEC--
T ss_pred             EEEEeccCccCCCcceeecC--CcceeEecCCCEEEEEEecCCCCCeEEEEE-CCccccC
Confidence            4666643       666654  555677889999999999999999999999 7766643

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.85  E-value=7e-09  Score=47.58  Aligned_cols=44  Identities=11%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.+...  +....+.+|+.+.|.|.+ +.|.|.+.|++ ++..+....
T Consensus         9 ~~~~~~--~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k-~~~~l~~~~   52 (95)
T 2k1m_A            9 SAFSKK--PRSVEVAAGSPAVFEAET-ERAGVKVRWQR-GGSDISASN   52 (95)
T ss_dssp             CCCSBC--CCCEEEETTSCEEEEEEC-SSSSCCCEEEC-SSSEECSST
T ss_pred             CeeEeC--CCcEEEeCCCcEEEEEEe-CCCCCeEEEEE-CCEECCCCC
Confidence            455544  567788999999999999 88999999999 777765443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=5.3e-09  Score=48.50  Aligned_cols=45  Identities=22%  Similarity=0.391  Sum_probs=35.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|. .|.|.|.+.|++ ++..+...
T Consensus         7 ~pp~~~~~--~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k-~~~~l~~~   51 (103)
T 2dku_A            7 GANCFTEE--LTNLQVEEKGTAVFTCK-TEHPAATVTWRK-GLLELRAS   51 (103)
T ss_dssp             CCCCCSSC--CCCEEEETTSEEEEEEE-CSSCCSCCEEEE-SSCBCCSS
T ss_pred             CCCEeEec--CCcEEEeCCCcEEEEEE-eCCCCCeEEEEe-CCEECCCC
Confidence            35666655  66788899999999999 589999999999 67666543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.84  E-value=1.3e-08  Score=47.05  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=35.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .+|.+...+ .....+.+|+.+.|.|.+. .|.|.+.|++ ++..+....
T Consensus         6 ~~p~~~~~~-~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k-~g~~i~~~~   52 (100)
T 2yuv_A            6 SGAAFAKIL-DPAYQVDKGGRVRFVVELA-DPKLEVKWYK-NGQEIRPST   52 (100)
T ss_dssp             SSCCEEECC-CSCEEECTTEEEEEEEEES-CTTSCEEEEE-SSCBCCCBT
T ss_pred             CCCeEEecC-CCccEEcCCCcEEEEEEec-CCCceEEEEE-CCEECCCCC
Confidence            367776652 2236788999999999998 7999999999 776664433

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.84  E-value=6.7e-09  Score=48.68  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...+ +....+.+|+.+.|.|.+ +.|.|.+.|++ +|..+..+
T Consensus        14 ~~p~f~~~~-~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k-~g~~l~~~   59 (104)
T 1pd6_A           14 KSTAFQKKL-EPAYQVSKGHKIRLTVEL-ADHDAEVKWLK-NGQEIQMS   59 (104)
T ss_dssp             TTSSCSEEC-CSEEEEETTSCEEEEEEC-SSSSSCCEEEE-SSSEECCC
T ss_pred             CCCEEEEcC-CCcEEEecCCCEEEEEEE-cCCCCEEEEEE-CCEECCCC
Confidence            456666552 444778899999999999 79999999999 78777654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.84  E-value=1.9e-08  Score=53.77  Aligned_cols=45  Identities=33%  Similarity=0.680  Sum_probs=38.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         3 ~~P~~~~~--p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~   47 (305)
T 2nzi_A            3 MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA   47 (305)
T ss_dssp             CCCEEEEC--CCCEEECTTCCEEEEEEEECSSCCEEEEEE-TTEECCC
T ss_pred             CCCeeeec--ccceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCEEccc
Confidence            47888776  667889999999999999999999999999 7766543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.9e-09  Score=50.50  Aligned_cols=50  Identities=12%  Similarity=0.134  Sum_probs=37.4

Q ss_pred             EEc-CCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEecCC
Q psy4606           6 VVV-PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKEG   58 (69)
Q Consensus         6 V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~~~~   58 (69)
                      |.. ++.+...  +....+.+|+.+.|.|.+.|.|. |.+.|+| +|..+....+
T Consensus         4 V~~~p~~~~~~--~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k-~g~~i~~~~r   55 (104)
T 2eny_A            4 GSSGHVGITKR--LKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSR   55 (104)
T ss_dssp             CCCCCCCCSBC--CCCEEEESSCCEEEEEECSSCCCSSCBCCBS-SSSBCSBCSS
T ss_pred             cccCCCEEEec--CCCcEEcCCCcEEEEEEEcCCCCCceeEEEE-CCEECCCCCC
Confidence            443 3455554  66788999999999999999875 4899999 7777654443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.83  E-value=2.8e-08  Score=56.77  Aligned_cols=55  Identities=18%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             eeEEEEcCCEEeecCC-CceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPPDILNEES-SSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~~~   57 (69)
                      ..|.|..+|.+...+. .....+.+|+.+.|.|.+.|.|.|. +.|++ ++..+....
T Consensus       303 ~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k-~g~~~~~~~  359 (524)
T 2ec8_A          303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRTFTDKW  359 (524)
T ss_dssp             EEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEES-SSCBCSSSB
T ss_pred             EEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEE-CCeeccCCc
Confidence            4688888998765421 2357889999999999999999999 99999 676665433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.83  E-value=2.1e-08  Score=53.27  Aligned_cols=48  Identities=21%  Similarity=0.388  Sum_probs=39.7

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus        94 ~l~v~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~  141 (291)
T 1qz1_A           94 NVKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDV  141 (291)
T ss_dssp             EEEEECCSEEEEC--CSSEEEETTSCEEECCEEECSSCCEEEEEE-TTSCS
T ss_pred             EEEeeccccccCC--CCcccccCCCeEEEEEEeccCCCCEEEEEE-CCEEc
Confidence            4667778887766  556778899999999999999999999999 66554

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.83  E-value=5.4e-09  Score=48.57  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             EEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        11 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .+...  +..+.+.+|+.+.|.|.+.| |.|.+.|+| ++..+....
T Consensus         9 ~~~~~--~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~l~~~~   51 (103)
T 1x44_A            9 MVTKQ--LEDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP   51 (103)
T ss_dssp             CCSBC--CCCEEEETTEEEEEEEECSS-SSCCCEEEE-TTEECCCST
T ss_pred             eeecc--CCCEEEECCCCEEEEEEecC-CCCeEEEEE-CCEECCCCC
Confidence            35544  66678889999999999988 779999999 777765443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=1.5e-09  Score=49.93  Aligned_cols=43  Identities=28%  Similarity=0.611  Sum_probs=34.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        10 ~~~i~~~--p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~   52 (96)
T 2ens_A           10 EVQLVVE--PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLP   52 (96)
T ss_dssp             SCCCEEE--STTSEECTTCEEEEECCCSSCSSCCCCCEE-SSSBCS
T ss_pred             CCEEEEC--CCCCEEcCCCeEEEEEEEccCCCCEEEEEE-CCEECc
Confidence            4555555  555678899999999999999999999999 676654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.82  E-value=9.3e-09  Score=48.21  Aligned_cols=38  Identities=18%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecC---CeEEEEeCCC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPR---PHITWKREDG   50 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~---P~~~W~~~~~   50 (69)
                      |.+...  +..+.+.+|+.+.|.|.+.|.|.   |.+.|+| ++
T Consensus         5 p~f~~~--p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k-~~   45 (108)
T 3cx2_A            5 GLFVMR--PQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GK   45 (108)
T ss_dssp             CSCSBC--CCCEEEETTCCEEEEEEEECC-CCSCCEEEEEE-TT
T ss_pred             cEEEeC--CCcEEEeCCCCEEEEEEECCCccCCCcEEEEcc-CC
Confidence            555555  66788899999999999999998   9999999 54

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.80  E-value=1.2e-08  Score=49.71  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             CCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      .+..+.|.|.+.|.|.|.++|+| +|+.+.....
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~k-nG~~l~~~~~   46 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSF   46 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEE-TTEECCCCSS
T ss_pred             cCccEEEEEEEeeeCCCeEEEEE-CCEECCCCCc
Confidence            57789999999999999999999 8888765443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.80  E-value=9.2e-09  Score=53.26  Aligned_cols=50  Identities=28%  Similarity=0.612  Sum_probs=34.5

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      .+.+..++.....  ........|..+.+.|.+.| .|.|.++|++.++..+.
T Consensus       112 ~v~~~~~~~~~~~--~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A          112 LVELKVAALGSDL--HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             EEEEEEEBCCCCC--EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             EEEEeeccceecc--cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            3444443333322  44556778999999999998 69999999985555543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.80  E-value=4.5e-08  Score=49.86  Aligned_cols=48  Identities=19%  Similarity=0.499  Sum_probs=37.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      .|.+... .+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....+
T Consensus       116 ~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~~  163 (212)
T 2r15_A          116 RARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDH  163 (212)
T ss_dssp             SCEEEEB-CCSEEEEETTCCEEEEEEEECSSCCEEEEEE-TTEEECCCSS
T ss_pred             CCccccc-CCCcEEEccCCeEEEEEEEcCCCCceEEEEE-CCeECccCCC
Confidence            3444433 1556778899999999999999999999999 7877765443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.78  E-value=1.2e-08  Score=60.83  Aligned_cols=46  Identities=33%  Similarity=0.554  Sum_probs=37.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...+ ...+.+..|..+.|.|.|.|.|.|.+.|+|+||..+..
T Consensus        38 ~P~~~~~p-~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~   83 (816)
T 3dmk_A           38 GPVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD   83 (816)
T ss_dssp             EEEEEECC-CSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCC
T ss_pred             CCcEEeCC-CCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccC
Confidence            47777763 34466888999999999999999999999966766643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.78  E-value=2.6e-08  Score=53.41  Aligned_cols=45  Identities=33%  Similarity=0.837  Sum_probs=34.0

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         4 ~~~P~~~~~--p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k-~g~~i~   48 (304)
T 2yd9_A            4 EEPPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVN   48 (304)
T ss_dssp             CCCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEC--------
T ss_pred             ccCCeeeec--CCceEecCCCeEEEEEEEEEeCCCeEEEEE-CCEECC
Confidence            468888876  667788899999999999999999999999 666553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.76  E-value=3.3e-08  Score=51.10  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=35.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeee-cCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  . ...+.+|..+.|.|.+.|. |.|.++|+| ++..+..
T Consensus       117 ~P~~~~~--~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~  160 (207)
T 3rbs_A          117 GPHFVEY--L-SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISV  160 (207)
T ss_dssp             SSEEEEE--E-EEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECC
T ss_pred             CCceEec--C-CcEEcCCCcEEEEEEEeCCCCCCEEEEEE-CCEECCC
Confidence            6776654  3 4678899999999999998 999999999 7877754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.76  E-value=2.4e-08  Score=51.30  Aligned_cols=45  Identities=27%  Similarity=0.583  Sum_probs=36.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+. .  +..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus        18 ~~P~~~-~--p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~-~g~~l~~~   62 (215)
T 3mtr_A           18 YAPKLQ-G--PVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSS   62 (215)
T ss_dssp             EEEEEE-C--CSEEEECTTCCEEEEEEEEEESCCEEEEEE-TTEESSCS
T ss_pred             cCCccc-C--CceEEEECCCCEEEEEEEeecCCCEEEEEE-CCeECCCC
Confidence            567774 3  556888999999999999999999999999 77766543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.76  E-value=3.6e-08  Score=49.62  Aligned_cols=44  Identities=30%  Similarity=0.607  Sum_probs=36.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         4 ~~P~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~   47 (194)
T 2a38_A            4 QAPTFTQP--LQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVIS   47 (194)
T ss_dssp             EEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCC
T ss_pred             CCCeEEcc--CCceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcc
Confidence            46777765  666788899999999999999999999999 676654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.76  E-value=2.8e-08  Score=53.26  Aligned_cols=50  Identities=24%  Similarity=0.462  Sum_probs=39.2

Q ss_pred             eeEEEE---cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVV---VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +.|.|.   .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus       195 ~~l~v~~~~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~l~  247 (304)
T 2yd9_A          195 ANLYVRVQNVAPRFSIL--PMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLT  247 (304)
T ss_dssp             EEEEEECCCEEEEEEEC--CCCBCCCTTCCEEEEEEEEEESCCEEEEEE-TTEECS
T ss_pred             EEEEEEeeccCCcEEec--CCceEEcCCCeEEEEEEEeeeCCCEEEEEE-CCEECC
Confidence            456664   46666655  445667889999999999999999999999 776664

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.74  E-value=7.8e-08  Score=48.89  Aligned_cols=51  Identities=33%  Similarity=0.674  Sum_probs=38.2

Q ss_pred             eEEEEc-CCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDVVV-PPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.|.. ++.+...  +....+..|+.+.|.|.+ .|.|.|.+.|++ ++..+...
T Consensus       104 ~l~V~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~l~~~  156 (212)
T 2v9r_A          104 SLEVAILRDDFRQN--PSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDK  156 (212)
T ss_dssp             EEEECEECSSCSBC--CCCEEEETTSCEEEECBCCCEESCCEEEEEE-TTEEECTT
T ss_pred             EEEEEeccccceeC--CCceEecCCCcEEEEEecCCCCCCCEEEEEE-CCccCCCC
Confidence            455654 3434333  555678899999999999 899999999999 77776543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.73  E-value=1.4e-08  Score=54.68  Aligned_cols=49  Identities=20%  Similarity=0.379  Sum_probs=36.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~   53 (69)
                      .|.|+++|.+...+ ........|..+.|.|.+.|.|.| .+.|++ ++..+
T Consensus       210 ~l~V~~~P~v~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~-~~~~l  259 (313)
T 4fqp_A          210 NLTVYYPPEVSISG-YDNNWYLGQNEATLTCDARSNPEPTGYNWST-TMGPL  259 (313)
T ss_dssp             ECCBCEEEEEEEEC-CCSCEETTCCCEEEEEEEEEESCCCEEEEEE-TTBSC
T ss_pred             ecccccCCcccccc-ccceeecCCCeEEEEEEecCCCCCcEEEEEE-CCEEC
Confidence            35566788775442 344456678999999999999999 699999 66554

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.72  E-value=1e-08  Score=53.17  Aligned_cols=46  Identities=17%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..+|.+...+ .. .....|..+.|.|.+.| .|.| .++|++ +|..+.
T Consensus       114 ~~~~P~v~~~~-~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  161 (218)
T 2rgs_A          114 LVRAPQVYILP-PP-AEQLSRKDVSLTCLVVGFNPGDISVEWTS-NGHTEE  161 (218)
T ss_dssp             CCBCCEEEEEC-CC-GGGTTSSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCCCCEEEEEC-CC-hHHhcCCceEEEEEEEeeeCCCcEEEEEE-CCEecc
Confidence            34677765442 11 11235899999999999 6877 999999 777653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.71  E-value=2.3e-08  Score=54.94  Aligned_cols=45  Identities=20%  Similarity=0.491  Sum_probs=36.0

Q ss_pred             cCCEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +.....   .+|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus         3 ~~P~~~~~--p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k-~g~~~~~   50 (382)
T 1cs6_A            3 YGPVFEEQ--PAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKM   50 (382)
T ss_dssp             EEEEEEEC--CCCEEEETTCSCCEEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             CCCEEEEC--CCcEEEecCCCCCcEEEEEEecCCCCCEEEEEE-CCEECCc
Confidence            36777776  444444   689999999999999999999999 7777653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.71  E-value=2.3e-08  Score=50.84  Aligned_cols=50  Identities=28%  Similarity=0.438  Sum_probs=38.8

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEee-EeeecCCeEEEEeCCCc-EEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQ-EII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~g~P~P~~~W~~~~~~-~~~   54 (69)
                      ..|.|..+|.+...  .....+..|..+.|.|. +.|.|.|.+.|++ ++. .+.
T Consensus        97 ~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~l~  148 (212)
T 1f97_A           97 IHLTVLVPPSKPTI--SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLT  148 (212)
T ss_dssp             EEEEEEBCCCCCEE--ECCSEEETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC
T ss_pred             EEEEEEcCCCCccc--CCccccCCCCeEEEEEEcccCcCCCEEEEEe-CCccccc
Confidence            35778888876554  33356778999999999 7899999999999 666 554

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.71  E-value=1.7e-08  Score=47.07  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.  |.+.|++ ++..+...
T Consensus         7 ~pp~~~~~--~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~~~~~   50 (108)
T 2dm7_A            7 GPARFTQD--LKTKEASEGATATLQCELSKV--APVEWKK-GPETLRDG   50 (108)
T ss_dssp             CCCCBCSC--CBCCEEETTSCEEEEEEBSSS--CCCEEES-SSSBCCSS
T ss_pred             CCCeeeec--CCcEEEeCCCcEEEEEEeCCC--CeeEEEE-CCEECCCC
Confidence            56777665  667788999999999999775  7899999 66665533

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.70  E-value=4.7e-08  Score=49.40  Aligned_cols=44  Identities=25%  Similarity=0.470  Sum_probs=37.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  +....+.+|+.+.|.|.+. |.|.|.+.|++ ++..+..
T Consensus         2 ~~~~~~~--p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~   46 (195)
T 2c5d_C            2 ESPFVGN--PGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILEL   46 (195)
T ss_dssp             CCSEEEC--CCCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCS
T ss_pred             CCeeccC--hhheEEecCCcEEEecccccCCCCcEEEEEE-CCEEccc
Confidence            6777776  7778899999999999999 99999999999 7776643

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.70  E-value=3.5e-08  Score=49.33  Aligned_cols=44  Identities=23%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus         2 ~~~~~~~--p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~   45 (182)
T 1rhf_A            2 GLKLMGA--PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQN   45 (182)
T ss_dssp             -----CC--CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCS
T ss_pred             CCEEEeC--CcceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCC
Confidence            4555555  667788899999999999999999999999 7766543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.70  E-value=7.2e-08  Score=49.37  Aligned_cols=49  Identities=33%  Similarity=0.581  Sum_probs=38.0

Q ss_pred             eEEEEc-CCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVV-PPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~   54 (69)
                      .|.|.. +|.+...  +....+..|+.+.|.|.+ .|.|.|.+.|++ ++..+.
T Consensus       101 ~l~v~~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~-~g~~~~  151 (217)
T 2vr9_A          101 SLQIAVLRDDFRVE--PKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLD  151 (217)
T ss_dssp             EEEECEECCSCSBC--CCCEEECTTSCEEECCBCCCEESCCEEEEEE-TTEEEC
T ss_pred             eEEEEEeCCCcEEC--CCccEEcCCCeEEEEEECCCCCCCCeEEEEE-CCcCCC
Confidence            455554 5555444  556678899999999999 899999999999 777765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.69  E-value=9.3e-08  Score=51.10  Aligned_cols=54  Identities=26%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             eeEEEEcCCEEeecC---CCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEE---SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~---~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +.|.|..+|.+....   ......+..|..+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~  148 (305)
T 2nzi_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNN  148 (305)
T ss_dssp             EEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEE-SSSBCCSS
T ss_pred             EEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEE-CCEECCCC
Confidence            456777666653210   0234667889999999999999999999999 67665433

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.69  E-value=5.6e-08  Score=45.01  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+|.+...  +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         3 v~~~p~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   43 (108)
T 3m45_A            3 VKGSQGQFPL--TQNVTVVEGGTAILTCRVDQNDNTSLQWSNP   43 (108)
T ss_dssp             -----CCCEE--CCCEEEETTSCEEEEEEESSCSSCCEEEECT
T ss_pred             cccCCCcccc--CCeeEEEeCCcEEEEeEEcCCCccEEEEEcC
Confidence            3456666665  6678889999999999999999999999984

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.67  E-value=9.4e-08  Score=47.81  Aligned_cols=43  Identities=19%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         2 ~~~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~   44 (189)
T 2v5t_A            2 MLTFREV--VSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVT   44 (189)
T ss_dssp             CCEEEEC--CSSEEEETTSCEEECCEEECSSCCEEEEEC------C
T ss_pred             Cceeecc--CCCEEEeCCCcEEEEEEEcCCCCCEEEEEE-CCccce
Confidence            5677666  566788899999999999999999999999 565543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.67  E-value=4e-08  Score=50.34  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=34.7

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      .|.|.    .+|.+...  ........++.+.|.|.+.| .|.| .+.|++ +|..+..
T Consensus       111 ~l~V~~~~~~~P~~~~~--~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~  166 (218)
T 3s96_B          111 KVTVLGQPKSTPTLTVF--PPSSEELKENKATLVCLISNFSPSGVTVAWKA-NGTPITQ  166 (218)
T ss_dssp             EEEEESCCCBCCEEEEE--CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEC--
T ss_pred             EEEEecCCCCCceEEee--CCCcccccCCcEEEEEEECcccCCCeEEEEEE-CCEECcC
Confidence            57777    55666543  22223345789999999999 6888 899999 7877653

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.67  E-value=2e-07  Score=50.02  Aligned_cols=46  Identities=24%  Similarity=0.426  Sum_probs=36.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+... ......+..|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus       207 ~~P~~~~~-~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~i~~  252 (315)
T 1itb_B          207 TRPVIVSP-ANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDE  252 (315)
T ss_dssp             CCCEECSC-CSEEEECCSSSCEEEEEEEEECTTSEEEEEE-TTEECCT
T ss_pred             CCCEEecC-CCCcEEEeCCCcEEEEEEEecCCCCeeEEEE-CCEECCc
Confidence            56777654 1334578899999999999999999999999 7776654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.66  E-value=6e-08  Score=52.52  Aligned_cols=49  Identities=20%  Similarity=0.482  Sum_probs=35.5

Q ss_pred             eeEEEEcCCEE--eecCCCceEEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDI--LNEESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~--~~~~~~~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|..  ...  + ...+.+|+.+.|.|.+.|.|.|  .+.|++ +++.+.
T Consensus       109 ~~l~V~~~p~~p~i~~--~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k-~g~~l~  161 (327)
T 2wng_A          109 TELSVRAKPSAPVVSG--P-AARATPQHTVSFTCESHGFSPRDITLKWFK-NGNELS  161 (327)
T ss_dssp             EEEEEEBCCCCCEEEC--C-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEEEEecCCCceeec--c-ccccCCCCEEEEEEEEeCccCCCcEEEEEE-CCEEcc
Confidence            36777765532  222  2 2456789999999999998876  899999 777664

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.66  E-value=2.8e-07  Score=50.84  Aligned_cols=53  Identities=30%  Similarity=0.628  Sum_probs=39.0

Q ss_pred             eeEEEEcCCE------EeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           2 GYLDVVVPPD------ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         2 ~~l~V~~~p~------~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ..|.|...|.      +...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus       208 ~~l~v~~~p~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~~~~  266 (403)
T 3laf_A          208 AEVRILSDPGLHRQLYFLQR--PSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRS  266 (403)
T ss_dssp             EEEEEECCCCCCEEEEEEEC--CCCEEEETTSCEEECCEEEEESCCEEEEEE-TTEECCCSS
T ss_pred             eeEEEecCCCcccCceEecC--CCceEecCCCcEEEEEEcCCCCCCeEEEEE-CCeeccCCC
Confidence            3566665553      2223  555677899999999999999999999999 776665433

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.66  E-value=1.5e-07  Score=43.60  Aligned_cols=44  Identities=18%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeee--cCCeEEEEeCCCcEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGY--PRPHITWKREDGQEI   53 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~~~~~~   53 (69)
                      ..+|.+...  +....+..|+.+.|.|.+.|.  |.|.+.|++ ++..+
T Consensus         8 ~~~P~i~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k-~~~~~   53 (112)
T 3so5_A            8 FPXPQITVQ--PETQSAIXGSDVSFTCSAASSSDSPMTFAWXX-DNEAL   53 (112)
T ss_dssp             CCSCEEEEC--CCCEEECTTCCEEEEEEEEESCCCCCEEEEEE-TTEEC
T ss_pred             CCCCeEEeC--CCCcEEECCCCEEEEEEEecCCCCCEEEEEcc-CCccc
Confidence            357888776  666788999999999999975  468999999 66554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.66  E-value=2.2e-08  Score=50.77  Aligned_cols=50  Identities=30%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEe
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .|.|..+|.+...  .....+..|..+.|.|.+ .|.|.|.+.|++ ++..+..
T Consensus       101 ~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~~~~  151 (209)
T 1nbq_A          101 KLIVLVPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPT  151 (209)
T ss_dssp             ECCEEBCCCCCCC--CCBSEEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCS
T ss_pred             EEEEecCCcCCCc--ccccceecCCEEEEEEeCCCCCCCceeEEEE-CCeeCCC
Confidence            4667778876554  334567889999999997 899999999999 6666543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.66  E-value=9.9e-08  Score=55.66  Aligned_cols=51  Identities=25%  Similarity=0.470  Sum_probs=40.2

Q ss_pred             eeEEEEcCCE-EeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPD-ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +.|.|..+|. +...  +....+..|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus       551 ~~l~V~~~p~~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~g~~i~~  602 (642)
T 1e07_A          551 VTLDVLYGPDTPIIS--PPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQQH  602 (642)
T ss_pred             EEEEEEeCCCcceec--CCceeEEcCCcEEEEEEeccCCCCeEEEEE-CCEECcc
Confidence            4678876554 4333  556778899999999999999999999999 7776653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.65  E-value=1.4e-07  Score=50.50  Aligned_cols=47  Identities=19%  Similarity=0.523  Sum_probs=36.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +|.+... .+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus       221 ~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~  267 (317)
T 2y25_A          221 RARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDD  267 (317)
T ss_dssp             SCEEEEB-CCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCCS
T ss_pred             CCccccc-CCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCCC
Confidence            3444443 2555678899999999999999999999999 777775443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=7e-08  Score=45.27  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             EEcCCEEeecCC-CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           6 VVVPPDILNEES-SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         6 V~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |..+|.+...+. .....+..|+.+.|.|.+. .|.|.+.|++ +++.+....
T Consensus         7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~   57 (113)
T 2cpc_A            7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTK-DGEEVVESP   57 (113)
T ss_dssp             CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEE-TTEECCCBT
T ss_pred             cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEE-CCEECccCC
Confidence            445665444321 1225677899999999995 8999999999 777665433

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.64  E-value=1.3e-07  Score=43.34  Aligned_cols=31  Identities=23%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             CceEEecCCCeEEEEeeEe-eecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAK-GYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~   48 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRL   48 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEG
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeC
Confidence            5667889999999999998 699999999983

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.64  E-value=1e-08  Score=52.12  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeC
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKRE   48 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~   48 (69)
                      ..|.|..+|.+...  .....+..|+.+.|.|.+ .|.|.|.+.|++.
T Consensus       114 ~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A          114 FLLTVLVKPSGTRC--FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             EEEEEECCCBSCEE--EEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             EEEEEEcCCCCcee--eeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence            46788888876543  333346789999999999 8999999999994

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.64  E-value=2.6e-07  Score=49.00  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=39.9

Q ss_pred             eeEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|.    .+|.+...  +....+.+|+.+.|.|.+.| .|.|.+.|++ ++..+.
T Consensus       175 ~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~~  229 (289)
T 3ejj_X          175 IWLKVNRVHPEPPQIKLE--PSKLVRIRGEAAQIVCSATNAEVGFNVILKR-GDTKLE  229 (289)
T ss_dssp             EEEEEESSCCCCCEEEEE--SSSEECCSSSCEEEEEEEEESSSCCEEEEEE-TTEECC
T ss_pred             EEEEEEECCCCCCeEEec--CCceEEEeCCcEEEEEEeCCCCCceEEEEEE-CCEEee
Confidence            357777    67887766  55566778999999999999 8999999999 666553

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.64  E-value=3.3e-09  Score=62.54  Aligned_cols=51  Identities=29%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             eEEE--EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDV--VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V--~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.|  ..+|.+...  +....+.+|+.+.|.|.+.|.|.|.++|+| ++..+...
T Consensus       658 ~l~v~~~~~P~~~~~--~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k-~g~~l~~~  710 (772)
T 3v2a_R          658 QLTVLERVAPTITGN--LENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVED  710 (772)
T ss_dssp             --------------------------------------------------------
T ss_pred             eecccccCCCEeecC--CCceEEeCCCCEEEEEEeCccCCCeEEEEE-CCeECcCC
Confidence            3444  467887765  555778899999999999999999999999 77776544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.64  E-value=1.8e-07  Score=48.15  Aligned_cols=52  Identities=27%  Similarity=0.582  Sum_probs=38.1

Q ss_pred             eeEEEEcCC---EEeecCCCceEEecCCCeE-EEEeeE-eeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPP---DILNEESSSDIMAPEGGTI-KLVCKA-KGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p---~~~~~~~~~~~~~~~g~~~-~l~C~~-~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|   .+...  +....+.+|..+ .|.|.+ .|.|.|.+.|++ ++..+...
T Consensus       108 ~~l~V~~~p~~~~~~~~--~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~-~~~~~~~~  164 (231)
T 2pet_A          108 ARLNVFAKPEATEVSPN--KGTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVP  164 (231)
T ss_dssp             EEEEEEBCCCCCEEEEC--CSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE-TTEECCCC
T ss_pred             EEEEEEecCCCcEEecC--CcceeecCCCceEEEEEEeECcccCCEEEEEE-CCccCccc
Confidence            357777664   44433  444556688887 999999 889999999999 77776543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.64  E-value=1e-07  Score=50.62  Aligned_cols=49  Identities=18%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        92 ~l~v~~~~~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~  140 (291)
T 2wim_A           92 VLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVT  140 (291)
T ss_dssp             EEEEECCCBCCSC--CCSEEEETTSCEEECCCCBCSSCCEEEEEC-C----C
T ss_pred             EEEecCCcceEeC--CCChhhcCCCCEEEEEEEccCCCCEEEEEE-CCcccc
Confidence            4666777776655  555678899999999999999999999999 665554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.63  E-value=3.5e-08  Score=50.47  Aligned_cols=50  Identities=24%  Similarity=0.478  Sum_probs=36.4

Q ss_pred             eeEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEEE
Q psy4606           2 GYLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~~   54 (69)
                      ..|.|.    .+|.+...  +.......|..+.|.|.+.|. |.| .+.|++ +|..+.
T Consensus       103 ~~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~  158 (213)
T 3mj8_L          103 TKVTVLGQPNAAPSVTLF--PPSSEELKTNQATLVCMINGFYPADVAVTWEA-DGTPIT  158 (213)
T ss_dssp             EEEEEECSCCBCCEEEEE--CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             eEEEEeCCCCCCCeEEcc--CCCcccccCCcEEEEEEeeceeCCCeEEEEEc-CCcccC
Confidence            467777    67777655  323334479999999999995 543 999999 787764

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.61  E-value=7.3e-08  Score=46.94  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             EEeecCCCceEEecCCCeEEEEeeEeee---cCCeEEEEe
Q psy4606          11 DILNEESSSDIMAPEGGTIKLVCKAKGY---PRPHITWKR   47 (69)
Q Consensus        11 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~---P~P~~~W~~   47 (69)
                      .|...  +..+.+.+|+.+.|.|.+.|.   |.|.+.|+|
T Consensus         9 ~F~~~--P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K   46 (126)
T 2dav_A            9 LFIEK--PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFK   46 (126)
T ss_dssp             SCCSC--CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEE
T ss_pred             EEEEc--CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee
Confidence            35555  677889999999999999885   899999999

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.61  E-value=3.9e-08  Score=53.24  Aligned_cols=45  Identities=16%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeec-CC-eEEEEeCCCcEEEe
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYP-RP-HITWKREDGQEIII   55 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~P-~~~W~~~~~~~~~~   55 (69)
                      +..+|.+...  +..  +.+|+.+.|.|.+.|.| .+ .+.|++ +|+.+..
T Consensus       219 v~~~P~i~~~--~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  265 (327)
T 2wng_A          219 IRVPPTLEVT--QQP--VRAENQVNVTCQVRKFYPQRLQLTWLE-NGNVSRT  265 (327)
T ss_dssp             BCBCCEEEEE--EEC--CSSTTCCEEEEEEEEEBSSCEEEEEEE-TTEEEEE
T ss_pred             cCCCCEEEEe--cCC--cCCCCcEEEEEEEccccCCCcEEEEEE-CCeEccC
Confidence            3467776654  222  67899999999999954 44 799999 7877653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.61  E-value=2.2e-07  Score=47.23  Aligned_cols=48  Identities=19%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             eEEEEcC---CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606           3 YLDVVVP---PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         3 ~l~V~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      .|.|..+   |.+...  ...  +..|+.+.|.|.+.|.| |.+.|++ ++..+...
T Consensus       103 ~l~V~~~~~~p~i~~~--~~~--~~~g~~v~l~C~~~~~p-p~i~W~~-~g~~l~~~  153 (208)
T 3r4d_A          103 RFHVHQPVTQPFLQVT--NTT--VKELDSVTLTCLSNDIG-ANIQWLF-NSQSLQLT  153 (208)
T ss_dssp             EEEEECCCCCCEEEES--CSS--CCTTCCEEEEEECSCTT-CEEEEEE-TTEECCCC
T ss_pred             EEEeccCCCCCEEecC--Cce--EeeCCCEEEEEECCCCC-CceEEEE-CCEeCCCC
Confidence            4666654   455443  222  77899999999999976 8999999 77776543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.60  E-value=9e-08  Score=49.16  Aligned_cols=47  Identities=28%  Similarity=0.682  Sum_probs=30.6

Q ss_pred             EEEEcC---CEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEE
Q psy4606           4 LDVVVP---PDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI   53 (69)
Q Consensus         4 l~V~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~   53 (69)
                      |.|..+   |.+...  + ...+..|+.+.|.|.+ .|.|.|.+.|++.++..+
T Consensus       103 l~V~~~~~~p~i~~~--~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~  153 (222)
T 4i0k_A          103 LQVAAPYSKPSMTLE--P-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL  153 (222)
T ss_dssp             CCCCBCCCCCEEECC--C------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             EEEEcCCCCCcEEeC--C-CceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence            445443   555443  2 2356689999999999 789999999998555444

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.59  E-value=2.7e-07  Score=51.80  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC---eEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP---HITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P---~~~W~~~~~~~~~~   55 (69)
                      +.|.|..+|.+.... +....+.+|+.+.|.|.+.|.|.|   .+.|+| ++..+..
T Consensus        78 ~~l~V~~~P~~~~~~-~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k-~g~~l~~  132 (450)
T 1z7z_I           78 TFLTVYWTPERVELA-PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKR  132 (450)
T ss_dssp             CEEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEEE
T ss_pred             EEEEEEeCCCcceec-CCCceEeeCCeEEEEEEecCCCCCcCcEEEEee-CCEEeec
Confidence            467788888765331 455678899999999999998888   999999 7777653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.59  E-value=7.7e-08  Score=49.20  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             eEEE---EcCCEEeecCCCceEEecCCCeEEEEeeEeeecC--CeEEEEeCCCcEEE
Q psy4606           3 YLDV---VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR--PHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V---~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~--P~~~W~~~~~~~~~   54 (69)
                      .|.|   ..+|.+...  +.......|+.+.|.|.+.|.|.  +.+.|++ +|..+.
T Consensus       103 ~l~V~~~~~~p~v~~~--~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~  156 (213)
T 3r06_A          103 KLEIKRADAKPTVSIF--PPSSEQLGTGSATLVCFVNNFYPKDINVKWKV-DGSEKR  156 (213)
T ss_dssp             EEEECCCCBCCEEEEE--CCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             eEEEeccCCCceeeee--CCCceecCCCCcEEEEEEeeecCCceEEEEEE-CCcccC
Confidence            4666   466766554  32333446788999999999654  3899999 787764

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.58  E-value=3.1e-08  Score=50.92  Aligned_cols=46  Identities=15%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..+|.+...+...  ....|+.+.|.|.+.| .|.+ .+.|++ +|+.+.
T Consensus       106 ~~~~P~v~~~~~~~--~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  153 (207)
T 2vol_A          106 RPKAPQVYTLPPPK--EQMAKDKVSLTCMITDFFPEDITVEWES-NGQPAE  153 (207)
T ss_dssp             CCBCCEEEEECCCT--GGGSSSEEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCcCCeEEEeCCCH--HHhcCCceEEEEEEeeEECCCCEEEEEE-CCEecc
Confidence            34677765442121  1235889999999999 5653 899999 777653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.58  E-value=1.5e-07  Score=48.70  Aligned_cols=49  Identities=14%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEecCCcEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGNTM   61 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~~~~~~   61 (69)
                      +|.+..   .....+.+|+.+.|.|.+.+ .|.|.++|++ +|+.+..+.++.+
T Consensus         3 ~p~~~~---~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~k-ng~~l~~~~~~~~   52 (207)
T 3rbs_A            3 DPFTKS---ELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKM   52 (207)
T ss_dssp             ---CCE---EEEEEECGGGCEEEEEECSCCCSCCEEEEEE-TTEEECSSSSCEE
T ss_pred             CCeeec---CCceEEEeCCeEEEEEEEecCCCCCEEEEEE-CCEECccCCCEEE
Confidence            455554   44677889999999999975 8999999999 8888865544333

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.58  E-value=3.1e-07  Score=53.89  Aligned_cols=48  Identities=19%  Similarity=0.424  Sum_probs=39.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      ..|.+...  .....+.+|+.+.+.|.+.|.|.|.++|++ +++.+....+
T Consensus       481 ~~P~~~~~--~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k-~~~el~~s~~  528 (573)
T 3uto_A          481 AQPRFIVK--PYGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSVK  528 (573)
T ss_dssp             GSCEEEEC--CCCEEECTTSCEEEEEEEECSSCCEEEEEE-TTEECCSSSS
T ss_pred             cCCccccC--CCCcEEeCCCcEEEEEEEEccCCCeEEEEE-CCEEcccCCc
Confidence            35777665  667788999999999999999999999999 7777654443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.57  E-value=6.3e-07  Score=49.31  Aligned_cols=42  Identities=40%  Similarity=0.763  Sum_probs=33.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCC--CcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED--GQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~--~~~~~   54 (69)
                      +|.+..   +....+.+|+.+.|.|.+.|.|.|.+.|++ +  |..+.
T Consensus         1 ~P~i~~---~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~-~~~g~~~~   44 (389)
T 2jll_A            1 QPHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKR-AVDGFTFT   44 (389)
T ss_dssp             CCEEEE---CCCEEEETTSEEEEEEEEECSSCCEEEEEE-TTTTEEEC
T ss_pred             CCeEEe---cCceEEeCCCeEEEEEEeecccCCeEEEEe-CCCCceec
Confidence            466665   334566789999999999999999999999 5  66654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.57  E-value=2.1e-07  Score=49.50  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             eeEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcE
Q psy4606           2 GYLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQE   52 (69)
Q Consensus         2 ~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~   52 (69)
                      ..|.|.    .+|.+...  +....+.+|+.+.|.|.+.|.|.|. +.|++ ++..
T Consensus       177 ~~l~V~~~~~~~P~i~~~--~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~-~~~~  229 (290)
T 2o26_X          177 FTLKVREAIKAIPVVSVP--ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK-MNPQ  229 (290)
T ss_dssp             EEEEEECCCCSCCEEECS--CSBCCCCTTCCEEEEEEEEESSTTCEEEEEE-ESSS
T ss_pred             EEEEEEeCCCCCCccccC--CCcceEecCCcEEEEEEEecCCcceeEEEec-CCCC
Confidence            356666    67888665  4445788999999999999999997 99999 5544

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.56  E-value=4.6e-08  Score=50.91  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=35.4

Q ss_pred             eEEEEcC---CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVP---PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..+   |.+... .+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus       126 ~l~V~~~~~~~~~~~~-~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k-~~~~~  177 (250)
T 2fbo_J          126 VLKVTGHTPSNNVHVS-TAEVVQVDEGNDITMTCPCTDCANANVTWYT-GPTFF  177 (250)
T ss_dssp             EEEETTTSCCSCCEEC-CCSEEECCTTCCEEECCCEESCTTCEEEEEE-EEECS
T ss_pred             EEEEeccCCCCeEEEe-cCceEEecCCCcEEEEEEecCCCCCeeEEEe-CCCcc
Confidence            4566653   333322 2555777889999999999999999999999 55443

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=98.56  E-value=2.4e-07  Score=43.25  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++|.+...  +.. ....|..+.|.|.+.| +|.. .++|++ +|+.+.
T Consensus         3 ~~P~V~v~--~~~-~~~~~~~~~L~C~~~gfyP~~i~v~W~k-~g~~~~   47 (99)
T 1lk2_B            3 KTPQIQVY--SRH-PPENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIP   47 (99)
T ss_dssp             BCCEEEEE--ESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             cCCEEEEE--cCC-cccCCCCEEEEEEEEEEECCCcEEEEEE-CCEECC
Confidence            46766543  111 1235678999999999 5654 899999 787763

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.56  E-value=8.2e-08  Score=51.83  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=38.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~   53 (69)
                      ..|.|..+|.+...+ .....+.+|+.+.|.|.+.|.|.|. +.|++ ++..+
T Consensus       224 ~~l~V~~~P~~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~-~~~~~  274 (331)
T 3u83_A          224 LTLNVQYEPEVTIEG-FDGNWYLQRMDVKLTCKADANPPATEYHWTT-LNGSL  274 (331)
T ss_dssp             EECCEEEEEEEEEEC-CCSCCBTTCCCEEEEEEEEEESCCCEEEEEE-TTBSC
T ss_pred             EEEEEecCCeEEEec-CCCceEeCCCeEEEEEeCcCCCCCCEEEEEE-CCCcc
Confidence            356677788776442 3344577899999999999999998 99999 55544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.55  E-value=4e-07  Score=54.38  Aligned_cols=50  Identities=22%  Similarity=0.393  Sum_probs=40.7

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus       337 ~l~V~~~~~~~~~--~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~~~~  386 (816)
T 3dmk_A          337 VLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGH  386 (816)
T ss_dssp             EEEECEEEEEEEE--SSEEECCTTSCEEEEEEEEEECCCEEEEEE-TTEECSC
T ss_pred             EEEEcCCCceeeC--CCceEecCCCCEEEEEEEeccCCCEEEEEE-CCEECCC
Confidence            4667677766655  566778899999999999999999999999 7776643

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.55  E-value=1.1e-07  Score=48.64  Aligned_cols=50  Identities=18%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             eeEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee--cCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY--PRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|.    .+|.+...  +.......|..+.|.|.+.|.  |.|.+.|++ +|..+.
T Consensus       100 ~~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~  155 (211)
T 3tv3_L          100 TKLTVLGQPKAAPSVTLF--PPSSEELQANKATLVCLISDFYPGAVTVAWKA-DSSPVK  155 (211)
T ss_dssp             EEEEECCSCCBCCEEEEE--CCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             ceEEEeCCCCcCCeeEec--CCchhhhcCCCeEEEEEeeeecCCCeEEEEEE-CCeecC
Confidence            356676    56776654  222233469999999999995  358999999 787764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.55  E-value=1e-07  Score=48.92  Aligned_cols=47  Identities=30%  Similarity=0.543  Sum_probs=36.3

Q ss_pred             cCCEEeecC--CCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~--~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...+  ......+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~   62 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQ   62 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCG
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEE-CCccccc
Confidence            466665431  0256778899999999999999999999999 7776643

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=5.8e-08  Score=44.79  Aligned_cols=36  Identities=22%  Similarity=0.525  Sum_probs=29.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +....+..|..+.|.|.+.|.| |.+.|++ ++..+..
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k-~g~~~~~   45 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLAE   45 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEE-SSSBCCC
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEE-CCEECCC
Confidence            4455678899999999999987 8999999 6766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.54  E-value=2.4e-07  Score=47.77  Aligned_cols=44  Identities=25%  Similarity=0.382  Sum_probs=35.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+++...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        17 ~~~~i~~~--p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~   60 (218)
T 3k0w_A           17 RGSKITVN--PESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIP   60 (218)
T ss_dssp             --CCEEEC--CCCEEEETTSBEEEECEETTTTSSEEEEEE-TTEECT
T ss_pred             CCCEEEEC--CCCeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECC
Confidence            34566666  677888999999999999999999999999 666654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.53  E-value=2.4e-07  Score=46.68  Aligned_cols=43  Identities=33%  Similarity=0.596  Sum_probs=33.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  .....+..|..+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus       113 ~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~  155 (201)
T 3s97_C          113 PADIVVQ--FKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMP  155 (201)
T ss_dssp             EEEEEEE--CCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTBCCC
T ss_pred             CCceEec--CCceEEecCCcEEEEEEccCCCCCceEEEe-CCCcCC
Confidence            4555554  336678899999999999999999999999 665543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.53  E-value=6.8e-07  Score=44.84  Aligned_cols=43  Identities=16%  Similarity=0.297  Sum_probs=34.0

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeec-CCeEEEEeCCCcEEE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYP-RPHITWKREDGQEII   54 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~~~~~~~~   54 (69)
                      +.+...  +....+.+|+.+.|.|.+.|.| .+.+.|++.++..+.
T Consensus         3 ~~v~~~--p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~   46 (191)
T 1epf_A            3 LQVDIV--PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS   46 (191)
T ss_dssp             CCEEEE--SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC
T ss_pred             eEEEec--CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc
Confidence            445454  5667788999999999999976 899999985666665

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.52  E-value=9.5e-08  Score=49.07  Aligned_cols=49  Identities=27%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             eEEEE---cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVV---VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|.   .+|.+...+ +. .....|+.+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       105 ~l~V~~~~~~P~v~~~~-~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~~~  158 (216)
T 2xzc_L          105 KLEIKRTVAAPSVFIFP-PS-DEQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQS  158 (216)
T ss_dssp             EEEECCCCBCCEEEEEC-CC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEEcCCCCCCceEEeC-CC-hhhccCCcEEEEEEEEeEcCCceEEEEEE-CCeecC
Confidence            46665   456665431 21 11235889999999999 6665 899999 777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.52  E-value=1e-07  Score=52.26  Aligned_cols=46  Identities=20%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      .|.|..+|.+ ..     ....+|..+.|.|.+.|.|.|.++|++ +|..+..
T Consensus       244 ~l~V~~~P~i-~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~  289 (347)
T 2ifg_A          244 QVNVSFPASV-QL-----HTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNE  289 (347)
T ss_dssp             CCCCBEEEEE-EE-----CCCEESSSEEEEEEEEEESCCEEEEEE-TTEECCC
T ss_pred             EEEEcCCCee-ee-----ccCccCceEEEEEEeeecCCCcEEEEe-CCEECCC
Confidence            3455566664 11     112468899999999999999999999 7777653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.52  E-value=3e-07  Score=49.23  Aligned_cols=45  Identities=22%  Similarity=0.422  Sum_probs=36.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCCeEEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~~~~~~~~   56 (69)
                      .+|.+..   +....+.+|+.+.|.|.+.|. |.|.+.|++ ++..+...
T Consensus         6 ~~P~~~~---~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~~~~~   51 (317)
T 2y25_A            6 TGPHFVE---YLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVD   51 (317)
T ss_dssp             SCCEEEE---EEEEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCS
T ss_pred             CCCcEee---eeeEEECCCCeEEEEEEEcCCCCCCEEEEEE-CCeEcCCC
Confidence            4778775   345788999999999999996 889999999 77776543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.50  E-value=1.6e-06  Score=47.10  Aligned_cols=47  Identities=17%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             eeEEEEcCC----EEeecCCCceEEecCCCeEEEEeeEeeec---CC-eEEEEeCCCcE
Q psy4606           2 GYLDVVVPP----DILNEESSSDIMAPEGGTIKLVCKAKGYP---RP-HITWKREDGQE   52 (69)
Q Consensus         2 ~~l~V~~~p----~~~~~~~~~~~~~~~g~~~~l~C~~~g~P---~P-~~~W~~~~~~~   52 (69)
                      ..|.|..+|    .+. .  +....+..|+.+.|.|.+.|.|   .| .+.|++ ++..
T Consensus       218 ~~l~V~~~~~~~~~~~-~--~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~-~g~~  272 (329)
T 3oq3_B          218 KILTVIPSQDHRFKLI-L--DPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN-PSGW  272 (329)
T ss_dssp             EEEEEECCCCCCEEEE-C--CSEEEECTTSCEEEEEEEEETTCCTTCCEEEEEC-TTSC
T ss_pred             EEEEEECCCCCCCcee-c--CCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEE-CCee
Confidence            357777766    444 3  5567888999999999999988   78 899999 6655

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.50  E-value=3.7e-07  Score=46.89  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=35.0

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeee-cC--CeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR--PHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~--P~~~W~~~~~~~~~   54 (69)
                      ..|.|+.+|...... .. ..+.+|+.+.|.|.+.|. |.  +.++|++ ++..+.
T Consensus        84 ~~l~V~~~p~~~~~~-~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k-~~~~l~  136 (202)
T 1vca_A           84 IQVEIYSFPKDPEIH-LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMK  136 (202)
T ss_dssp             EEEEEEBCCSCCEEE-ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEE
T ss_pred             EEEEEEeCCCCCEeC-Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEe-CCeECc
Confidence            467888777533221 22 456789999999999985 44  4789999 777664

>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...

Probab=98.50  E-value=2.3e-07  Score=43.38  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+ . . ....|..+.|.|.+.| +|.. .++|.+ +|+.+
T Consensus         4 ~~P~V~v~~-~-~-~~~~~~~~~L~C~~~gFyP~~i~v~W~k-~g~~~   47 (100)
T 1k5n_B            4 RTPKIQVYS-R-H-PAENGKSNFLNCYVSGFHPSDIEVDLLK-NGERI   47 (100)
T ss_dssp             BCCEEEEEE-S-S-CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCCEEEEEe-C-C-cccCCCcEEEEEEEEeeECCceEEEEEE-CCEEC
Confidence            466665421 1 1 1235678999999999 6765 899999 78776

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.50  E-value=1.4e-07  Score=48.19  Aligned_cols=50  Identities=24%  Similarity=0.431  Sum_probs=34.9

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      .|.|..   +|.+...  ........|..+.|.|.+.| .|.| .+.|++ +|..+..
T Consensus       103 ~l~V~~~~~~p~v~~~--~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~  157 (213)
T 3d9a_L          103 KLEIKRADAAPTVSIF--PPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN  157 (213)
T ss_dssp             EEEECCCCBCCEEEEE--CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred             EEEEecCCCCceeEeE--CCChhhcCCCcEEEEEEEeeecCCceEEEEEc-CCCcCcc
Confidence            566664   6766553  21222346889999999998 7776 899999 7877653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.49  E-value=1e-06  Score=45.33  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=38.2

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  +. ..+.+|+.+.|.|.+.+ .|.|.+.|++ ++..+.
T Consensus        82 ~~l~V~~~p~~~~~--~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k-~g~~~~  131 (204)
T 3sgj_C           82 VQLEVHIGWLLLQA--PR-WVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKGRK  131 (204)
T ss_dssp             EEEEEECSSEEEEC--SC-SEEETTCCEEEEEEEGGGCCCEEEEEEE-TTEEEE
T ss_pred             EEEEEecCceEecC--Cc-eeEeCCCcEEEEEEecCCCCCceEEEEE-CCcEee
Confidence            46788888877664  33 56778999999999976 5779999999 777653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.49  E-value=1.3e-06  Score=43.22  Aligned_cols=49  Identities=24%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  + ...+.+|..+.|.|.+. |.|.|.+.|++ ++..+.
T Consensus        79 ~~l~v~~~~~~~~~--~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~  128 (170)
T 3ry4_A           79 VHLTVLFEWLVLQT--P-HLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQK  128 (170)
T ss_dssp             EEEEEECCSEEEEC--S-CSEECTTCCEEEEEEEGGGCCEEEEEEEE-TTEEEE
T ss_pred             EEEEEECCceEecC--C-CceeecCCeEEEEEECCCCCCCceEEEEE-CCeEcc
Confidence            46777777766553  2 34677899999999994 57889999999 777665

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.48  E-value=4.1e-07  Score=45.77  Aligned_cols=44  Identities=16%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             EcCCEEeecCCCceEEecC-CCeEEEEeeEeeecC--CeEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPE-GGTIKLVCKAKGYPR--PHITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~-g~~~~l~C~~~g~P~--P~~~W~~~~~~~~~   54 (69)
                      |.+|.+...   ....+.+ |+.+.|.|.+.|.|.  |.+.|++ ++..+.
T Consensus         1 Q~~P~i~~~---~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~-~~~~~~   47 (190)
T 2wv3_A            1 QNEPRIVTS---EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELT   47 (190)
T ss_dssp             --CCEEEEC---CCEECCCSSSCEEEEEEEEECSSCEEEEEEEE-TTEECT
T ss_pred             CCCCccccc---ceEEEccCCceEEEEEEeccCCCCceEEEEEE-CCEECc
Confidence            457887653   3455556 999999999999887  8899999 676654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.48  E-value=1.9e-07  Score=53.08  Aligned_cols=35  Identities=31%  Similarity=0.758  Sum_probs=30.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +....+.+|+.+.+.|.+.|.|.|.+.|++ ++..+
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~-~~~~~  426 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHL  426 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEEC-TTSCB
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEE-CCccc
Confidence            567788999999999999999999999999 55443

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=98.48  E-value=5.5e-07  Score=43.37  Aligned_cols=42  Identities=21%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+ ..  ....|..++|.|.+.| +|.. .++|.+ ||+.+
T Consensus        23 ~~P~V~v~~-~~--~~~~~~~~tL~C~a~gFyP~~I~v~W~k-nG~~i   66 (119)
T 1bii_B           23 KTPQIQVYS-RH--PPENGKPNILNCYVTQFHPPHIEIQMLK-NGKKI   66 (119)
T ss_dssp             BCCEEEEEE-SS--CCCSSSCEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             cCCEEEEEc-CC--cccCCCCEEEEEEEEeecCCCeEEEEEE-CCEEC
Confidence            567765421 11  1235678999999999 5654 899999 78776

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.48  E-value=1.7e-07  Score=47.93  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=33.6

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|..   +|.+...+ + ......|+.+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       102 ~l~V~~~~~~P~v~~~~-~-~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~~~  155 (210)
T 1lk3_L          102 KLELKRADAAPTVSIFP-P-STEQLATGGASVVCLMNNFYPRDISVKWKI-DGTERR  155 (210)
T ss_dssp             EEEECCCCBCCEEEEEC-C-CHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEEcCCCcCCeEEEEC-C-chhhccCCcEEEEEEEEeEeCCceEEEEEe-CCccCC
Confidence            566664   56665532 2 122347899999999998 5665 899999 777654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.47  E-value=3.9e-07  Score=46.28  Aligned_cols=29  Identities=31%  Similarity=0.851  Sum_probs=25.4

Q ss_pred             EecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606          22 MAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      ...+|+.+.|.|.+.|.|.|.+.|++ ++.
T Consensus       114 ~~~~g~~v~l~C~~~g~P~p~v~W~~-~~~  142 (202)
T 3bp6_B          114 EVPGTGEVQLTCQARGYPLAEVSWQN-VSV  142 (202)
T ss_dssp             ECTTTCCEEEEEEEEEBSCCEEEETT-CCS
T ss_pred             ecCCCCeEEEEEEccccCCceEEEEe-CCC
Confidence            45689999999999999999999998 444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.47  E-value=3.3e-07  Score=46.54  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=26.2

Q ss_pred             eeEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           2 GYLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ..|.|..   +|.+...  + ...+.+|+.+.|.|.+.|.| |.+.|+| ++..+
T Consensus        90 ~~l~V~~~~~~p~i~~~--~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k-~g~~~  139 (196)
T 2d3v_A           90 LELVVTGFYNKPTLSAL--P-SPVVTSGENVTLQCGSRLRF-DRFILTE-EGDHK  139 (196)
T ss_dssp             EEEEEECSSCCCEEEC--------------CEEEEEESSCC-SEEEEEE-C---C
T ss_pred             EEEEecCCCCCCeEEcc--C-CccccCCCcEEEEEEcCCCC-CEEEEEc-cCCcc
Confidence            3567765   4666543  3 24677899999999999999 9999999 66554

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.47  E-value=1.8e-07  Score=47.99  Aligned_cols=45  Identities=24%  Similarity=0.480  Sum_probs=29.3

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ..+|.+...+...  ....++.+.|.|.+.| .|.+ .++|++ +|..+.
T Consensus       107 ~~~P~v~~~~~~~--~~~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  153 (207)
T 1l6x_A          107 PREPQVYTLPPSR--DELTKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  153 (207)
T ss_dssp             CBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CcCCEEEEECCCh--HHhcCCcEEEEEEEeCeECCCeEEEEEE-CCeecc
Confidence            3567655432121  1124667999999999 5654 999999 787664

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.47  E-value=5e-07  Score=52.75  Aligned_cols=51  Identities=27%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|..... .+....+..|..+.|.|.+.|.|.|.+.|++ +|..+.
T Consensus       373 ~~l~V~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~~~  423 (642)
T 1e07_A          373 VILNVLYGPDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQ  423 (642)
T ss_pred             EEEEEEcCCCCCee-cCCceEecCCCcEEEEEEcCccCCCeEEEEE-CCEEcC
Confidence            35777766643222 1445677899999999999999999999999 776654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.46  E-value=2.7e-07  Score=47.43  Aligned_cols=47  Identities=26%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             eEEEEcC----CEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606           3 YLDVVVP----PDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~   52 (69)
                      .|.|...    |.+...  .....+..|+.+.|.|.+.| .|.| .+.|++ ++..
T Consensus       114 ~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~  166 (219)
T 1c1e_H          114 SLTVSSAKTTPPSVYPL--APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  166 (219)
T ss_dssp             EEEECCCCCBCCEEEEE--CCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             EEEEecCCCCCCeEEEe--cCccccccCCeEEEEEEcccccCCCeEEEEEe-CCcc
Confidence            4666642    555443  21123467999999999999 9999 999999 5654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.46  E-value=3.8e-07  Score=46.63  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|.    .+|.+...  ........|..+.|.|.+.|. |.| .+.|++ +|+.+.
T Consensus       105 ~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~  159 (212)
T 1q0x_L          105 KLTVLGQPKSSPTVTLF--PPSSEELSTAKATLVCTITDFYPGVVTVDWKV-DGTPVT  159 (212)
T ss_dssp             EEEECCSCCBCCEEEEE--CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             EEEEecCCCCCCeeEEe--CCCHHHccCCcEEEEEEEEEEeCCCeEEEEEE-CCEeCC
Confidence            45553    46666543  211223468899999999995 444 899999 787764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.46  E-value=6.4e-07  Score=46.81  Aligned_cols=45  Identities=16%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEec
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIK   56 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~~   56 (69)
                      .|.+...  +....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+...
T Consensus         1 kP~i~~~--p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~-~g~~~~~~   46 (262)
T 3rjd_A            1 KAVITLQ--PPWVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTS   46 (262)
T ss_dssp             CCEEEES--SCCSEEETTCCEEEEEECSSCCCTTCEEEEE-TTEECSCC
T ss_pred             CCeEecC--CCcEEeeCCCeEEEEEECCCCCCCceEEEEE-CCEEeecc
Confidence            3666665  556678899999999999999988 999999 77776443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.46  E-value=4.1e-07  Score=51.99  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~   54 (69)
                      ..+|.+...+ +....+ .++.+.|.|.+.|.|.|  .+.|++ +|+.+.
T Consensus       423 ~~~P~v~~~~-~~~~~~-~~~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~  469 (523)
T 2rcj_C          423 PREPQVYTLP-PSREEM-TKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  469 (523)
T ss_pred             CCCCEEEEeC-CChHHc-cCCceEEEEEEEeeECCCCEEEEEE-CCEECC
Confidence            4677765442 222222 34459999999997766  899999 787764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.46  E-value=3.2e-07  Score=48.74  Aligned_cols=42  Identities=14%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             EEEEc--CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           4 LDVVV--PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         4 l~V~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      |.|..  +|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       174 l~v~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~  217 (289)
T 3mjg_X          174 VYRLQVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWTY  217 (289)
T ss_dssp             EEECCCCCCCCEEE--ESCSEEETTSCEEEEEEEESCSSBEEEEEC
T ss_pred             EEecCCCCCCcEEe--CCcceeEcCCCEEEEEEECCCCCcceEEEc
Confidence            44443  5555544  334567899999999999999999999997

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=2.8e-07  Score=42.47  Aligned_cols=36  Identities=22%  Similarity=0.594  Sum_probs=30.2

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..+.+.+|+.+.|.|.+. .|.|.+.|+| ++..+...
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~   54 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYK-DGKKLSSS   54 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEE-TTEECCCC
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEE-CCEECCCC
Confidence            456788999999999998 8999999999 77766543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.45  E-value=4.3e-08  Score=52.58  Aligned_cols=49  Identities=20%  Similarity=0.351  Sum_probs=35.9

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~   53 (69)
                      .|.|+.+|.+...+ ........|..+.|.|.+.|.|.| .+.|+| ++..+
T Consensus       205 ~l~V~~~P~~~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k-~~~~~  254 (308)
T 4fom_A          205 ILDIQYAPEVSVTG-YDGNWFVGRKGVNLKCNADANPPPFKSVWSR-LDGQW  254 (308)
T ss_dssp             ECCCCEEEEECCBC-CCSCEETTCCSCEEECCEEEESCEEEEECCB-SSSCC
T ss_pred             EEEEecCCeeEEcc-cceeeeeccccEEEEEEEecCCCCcEEEEEE-CCeEC
Confidence            34566778776542 334556778999999999999999 699999 45443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.44  E-value=1.4e-07  Score=48.86  Aligned_cols=49  Identities=20%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             eEEEE---cCCEEeecCCCceEEecCCCeEEEEeeEee-ec-CCeEEEEeCCCcEEE
Q psy4606           3 YLDVV---VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YP-RPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P-~P~~~W~~~~~~~~~   54 (69)
                      .|.|.   .+|.+...  ........|+.+.|.|.+.| .| .|.++|++ +|..+.
T Consensus       126 ~l~V~~~~~~p~v~~~--~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k-~g~~~~  179 (237)
T 3sob_L          126 KVEIKRTVAAPSVFIF--PPSDEQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQS  179 (237)
T ss_dssp             EEEEECCCBCCEEEEE--CCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEEecCCCCCceEEe--CCChhhccCCceEEEEEEcccCCCceEEEEEE-CCCCCC
Confidence            45553   45655543  22222335788999999999 56 68999999 776654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.44  E-value=5e-07  Score=51.65  Aligned_cols=49  Identities=18%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             eEEE----EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEE
Q psy4606           3 YLDV----VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V----~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~   54 (69)
                      .|.|    ..+|.+...  +......+|+.+.|.|.+.|.|.|  .++|++ +|+.+.
T Consensus       104 ~l~V~~~~~~~P~~~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~  158 (523)
T 2rcj_C          104 KVTVLGQPKANPTVTLF--PPSSEELQANKATLVCLISDFYPGAVTVAWKA-DGSPVK  158 (523)
T ss_pred             EEEeccCCCcCCeEEec--CCcccccCCCceEEEEEeccccCCceEEEEec-CCCCCC
Confidence            5677    356766554  444455678999999999997764  999999 776653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.42  E-value=1.1e-06  Score=43.82  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=36.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~~   56 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|. +.|++ ++..+...
T Consensus         6 ~~p~i~~~--p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~-~~~~~~~~   52 (175)
T 1fnl_A            6 PKAVVFLE--PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISSQ   52 (175)
T ss_dssp             CCCEEEEE--SCCSEEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEESS
T ss_pred             CCCEEEEc--CCceeeeCCCcEEEEeeCCCCCCCcceEEEE-CCEEccCC
Confidence            35666665  5556788999999999999999887 78999 77776543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.42  E-value=5.6e-07  Score=46.62  Aligned_cols=46  Identities=28%  Similarity=0.601  Sum_probs=35.2

Q ss_pred             cCCEEeecCC--CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEES--SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~--~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+.....  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~   57 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFR   57 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEE-TTEECC
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEE-CCcccC
Confidence            5676654311  335778899999999999999999999999 776654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.41  E-value=2.2e-06  Score=42.79  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~   54 (69)
                      ..|.|..++.+...  + ...+.+|..+.|.|.+.|.|. |.+.|++ ++..+.
T Consensus        82 ~~l~V~~~~~~~~~--~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k-~g~~~~  131 (175)
T 1fnl_A           82 VQLEVHIGWLLLQA--P-RWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRK  131 (175)
T ss_dssp             EEEEEECSSEEEEC--S-CSEEETTCCEEEEEEECTTCCCEEEEEEE-TTEEEE
T ss_pred             EEEEEeCCCceeeC--C-CceecCCCCEEEEEEcCCCCCceEEEEEE-CCeEcc
Confidence            45777766655543  2 345778999999999998655 5999999 777664

>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0

Probab=98.41  E-value=2.2e-07  Score=43.25  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .|..+.|.|.+.| +|.+ .++|.+ +|+.+
T Consensus        17 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~   46 (97)
T 3gbl_A           17 YGKENTLICYVSGFHPPDISIELLK-NGEVI   46 (97)
T ss_dssp             TTCCEEEEEEEECCBSSCEEEEEEE-TTEEC
T ss_pred             CCCcEEEEEEEcceeCCccEEEEEE-CCccC
Confidence            4778999999999 6776 799999 77765

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.40  E-value=4.9e-07  Score=48.12  Aligned_cols=50  Identities=16%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...  .....+.+|+.+.|.|.+.| |. |.+.|++.+|..+.
T Consensus        84 ~~l~V~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~  134 (290)
T 2o26_X           84 IYVFVRDPAKLFLV--GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP  134 (290)
T ss_dssp             EEEEEECSSCCBCC--CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC
T ss_pred             EEEEEeCCCccccc--ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC
Confidence            46788887776543  55677889999999999997 87 99999543776664

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.40  E-value=2.1e-07  Score=48.62  Aligned_cols=50  Identities=30%  Similarity=0.567  Sum_probs=34.5

Q ss_pred             eEEEEc------CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV------PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|..      +|.+.... +....+..|..+.|.|.+.|. |.| .+.|++ +|..+.
T Consensus       108 ~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~~~  165 (238)
T 1bec_A          108 RLTVLEDLRQVTPPKVSLFE-PSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVH  165 (238)
T ss_dssp             EEEEESCGGGCBCCEEEEEC-CCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE-TTEEEC
T ss_pred             EEEEeccCCCCCCCceEEEC-CChHHcccCCceEEEEEEeeEeCCCcEEEEEE-CCEECC
Confidence            467764      56554331 222334578999999999995 766 899999 777664

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.40  E-value=8.8e-07  Score=46.40  Aligned_cols=48  Identities=23%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC----eEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP----HITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P----~~~W~~~~~~~~~   54 (69)
                      +.|.|+.+|...... +.  ....|+.. |.|.+.| .|.+    ++.|+| +++.+.
T Consensus        89 ~~ltV~~~P~~~~i~-~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk-~~~~L~  141 (210)
T 1gsm_A           89 VQLLVYAFPNQLTVS-PA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLV-GGQELE  141 (210)
T ss_dssp             EEEEEEBCCSEEEEE-SS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE-TTEECT
T ss_pred             EEEEEEecCCCcEEc-cc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEE-CCEEcc
Confidence            578889999765531 22  45567778 9999999 5754    899999 777763

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=45.66  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=29.8

Q ss_pred             EEeecCCCceEEecCCCeEEEEeeEeee---cCCeEEEEe
Q psy4606          11 DILNEESSSDIMAPEGGTIKLVCKAKGY---PRPHITWKR   47 (69)
Q Consensus        11 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~---P~P~~~W~~   47 (69)
                      .+...  +..+.+.+|..+.|.|.+.|.   |.|.+.|+|
T Consensus        14 ~f~~~--P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K   51 (118)
T 2edn_A           14 VFLKK--PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK   51 (118)
T ss_dssp             SCSBC--CCCCEEETTSCEECCEEEETTTSSSCCCCEEEE
T ss_pred             eEEEC--CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee
Confidence            44555  677889999999999999885   899999999

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.38  E-value=1.1e-06  Score=45.84  Aligned_cols=46  Identities=28%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQ   51 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~   51 (69)
                      ..|.|..+|.+...  +. .....|+.+.|.|.+.| .|.| .+.|++ +++
T Consensus       112 ~~L~V~~~P~v~~~--~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k-~g~  159 (248)
T 3pv7_A          112 VQLEVVASPASRLL--LD-QVGMKENEDKYMCESSGFYPEAINITWEK-QTQ  159 (248)
T ss_dssp             EEEEEEBCCEEEEE--CC---------CEEEEEEEEEBSSCCEEEEEE-ECS
T ss_pred             EEEEEecCCceEEe--cC-CccccCCCcEEEEEEccEECCCeEEEEEE-CCc
Confidence            46788888987765  22 23445778889999999 8999 999999 554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.38  E-value=2.7e-07  Score=48.63  Aligned_cols=45  Identities=22%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ..+|.+...+...  ....|..+.|.|.+.| .|.+ .+.|++ +|+.+.
T Consensus       121 ~~~P~v~v~~~~~--~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  167 (239)
T 1i1c_A          121 PRGPQVYTMAPPK--EEMTQSQVSITCMVKGFYPPDIYTEWKM-NGQPQE  167 (239)
T ss_dssp             CBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CcCCEEEEECCCh--HHhcCCcEEEEEEEeeeECCCeEEEEEE-CCEECC
Confidence            3567665442121  1234788999999999 5653 899999 777653

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.38  E-value=1.1e-06  Score=40.00  Aligned_cols=36  Identities=22%  Similarity=0.501  Sum_probs=29.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      +....+.+|+.+.|.|.+.|  .|.+.|++ ++..+...
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k-~g~~~~~~   43 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTK-DGVHLGPN   43 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEE-TTEEECCC
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEE-CCEECCCC
Confidence            55677889999999999987  58999999 78776543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.37  E-value=1.2e-06  Score=46.32  Aligned_cols=44  Identities=9%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-----eEEEEeC
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-----HITWKRE   48 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-----~~~W~~~   48 (69)
                      .|.|..+|.+...  +....+.+|..++|.|.+.|.|.|     .+.|++.
T Consensus       115 ~L~V~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A          115 TVTVSSDIELTQT--PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             EEEECCCCCEEEE--CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             eeeecccccEEec--CcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            5677777776655  666778999999999999998775     9999983

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.37  E-value=1.5e-06  Score=44.68  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEec
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIK   56 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~~   56 (69)
                      ..|.+...  +....+.+|+.+.|.|.+.|.|.|. +.|++ ++..+...
T Consensus         6 p~p~i~~~--p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k-~g~~l~~~   52 (204)
T 3sgj_C            6 PKAVVFLE--PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-NESLISSQ   52 (204)
T ss_dssp             CBCEEEEE--SCCSEEETTCCEEEEEECCSSSSCCCEEEEE-TTEEESCC
T ss_pred             CCCeEEEc--CCCeEEECCCCEEEEEcCCCCCCCcEEEEEE-CCEEcccC
Confidence            34566555  5446788999999999999999886 99999 77776543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.37  E-value=2.6e-06  Score=43.08  Aligned_cols=36  Identities=25%  Similarity=0.553  Sum_probs=29.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ........+..+.+.|.+.|.|.|.++|++ ++..+.
T Consensus       125 ~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~-~~~~~~  160 (218)
T 4frw_A          125 GPALEEGQGLTLAASCTAEGSPAPSVTWDT-EVKGTT  160 (218)
T ss_dssp             CSCEETTCCSEEEEEEEEEEBSCCEEEEEE-SSCCEE
T ss_pred             eeeeeeeeccccceeeeccCCcCceEEEEE-CCcccc
Confidence            445667789999999999999999999999 555443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.37  E-value=7.9e-07  Score=49.00  Aligned_cols=45  Identities=29%  Similarity=0.547  Sum_probs=34.7

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeC
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKRE   48 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~   48 (69)
                      .|.|..+|.+.... .....+.+|+.+.|.|.+ .|.|.|.+.|+++
T Consensus       109 ~l~V~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~  154 (404)
T 3p3y_A          109 RLQVSKSPLWPKEN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS  154 (404)
T ss_dssp             EEEECCCCCCCCCC-CCCEEEETTSCEEECCCCCCCSSCCEEEEECT
T ss_pred             EEEEeccCccccCC-CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCC
Confidence            46676676554331 344678899999999999 7899999999994

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.37  E-value=2e-06  Score=45.93  Aligned_cols=44  Identities=23%  Similarity=0.438  Sum_probs=34.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEec
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIK   56 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~~   56 (69)
                      +|.+...   ....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+...
T Consensus       222 ~p~~~~~---~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~~~  266 (312)
T 2y23_A          222 GPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVD  266 (312)
T ss_dssp             SSEEEEE---EEEEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEEEE
T ss_pred             CCceeec---ceEEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECCCC
Confidence            3555532   23677899999999999999998 999999 78877643

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.37  E-value=3.5e-07  Score=50.97  Aligned_cols=45  Identities=16%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ec-CCeEEEEeCCCcEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YP-RPHITWKREDGQEI   53 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P-~P~~~W~~~~~~~~   53 (69)
                      +..+|.+...  +.......|..+.|.|.+.| +| .+.++|++ +|+.+
T Consensus       271 ~~~~P~v~v~--~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~~  317 (376)
T 2aty_A          271 RPKAPQLYTI--PPPKEQMAKDKVSLTCMITDFFPEDITVEWQW-NGQPA  317 (376)
T ss_pred             CCcCCeEEee--CCCHHHhcCCceEEEEEEEEeECCCcEEEEEE-CCEEC
Confidence            3467776654  22222345889999999999 44 46899999 77665

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.37  E-value=3.4e-07  Score=45.73  Aligned_cols=46  Identities=13%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEe
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIII   55 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~   55 (69)
                      ..+|.+...  +....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+..
T Consensus         2 ~~~P~i~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~~~~~   48 (176)
T 1f2q_A            2 PQKPKVSLN--PPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEE   48 (176)
T ss_dssp             --CCCCEEE--SSCSEEETTCCEEEECCTTCC----CCEEEE-TTEECSC
T ss_pred             CCCCEEEcC--CCCcceecCCcEEEEEeCCCCCCcceEEEEE-CCeECCC
Confidence            456777665  555678899999999999998886 699999 7766543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.37  E-value=3.2e-07  Score=46.92  Aligned_cols=50  Identities=24%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEEe
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~~   55 (69)
                      .|.|.    .+|.+...  ........|..+.|.|.+.|. |. |.+.|++ +|+.+..
T Consensus       103 ~l~V~~~~~~~p~v~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~~  158 (212)
T 1nfd_E          103 QLTVLRGPKSSPKVTVF--PPSPEELRTNKATLVCLVNDFYPGSATVTWKA-NGATIND  158 (212)
T ss_dssp             EEEEECCCCBCCEEECC--CCCHHHHHTTEECCCEEEEEEBSSCCEEEEEE-TTEEECS
T ss_pred             EEEEccCCCCCCEEEee--CCchHhccCCceEEEEEEEeeECCccEEEEEE-CCeEcCC
Confidence            45663    45666543  222233568899999999996 65 8999999 7877653

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.36  E-value=1.7e-06  Score=43.14  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=36.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..++.+...  + ...+.+|+.+.|.|.+. |.|.|.+.|++ +|..+.
T Consensus        79 ~~l~V~~~~~~~~~--~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~  128 (176)
T 1f2q_A           79 VYLEVFSDWLLLQA--S-AEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALK  128 (176)
T ss_dssp             EEEEEECSSEEEEE--S-CSEEETTSCEEEEEEEGGGCCEEEEEEEE-TTEECC
T ss_pred             EEEEEeCcceeecC--C-cceeeCCCCEEEEEEecCCCCceEEEEEE-CCEEEe
Confidence            35677756655543  2 24567899999999995 68889999999 777664

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.36  E-value=8.3e-07  Score=45.70  Aligned_cols=46  Identities=24%  Similarity=0.561  Sum_probs=32.2

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCc
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~   51 (69)
                      .|.|.    .+|.+...  +......+|+.+.|.|.+.|. |.| .+.|++ ++.
T Consensus       115 ~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~  166 (220)
T 1pz5_B          115 SVTVSSATTTAPSVYPL--VPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY-GAL  166 (220)
T ss_dssp             EEEECSSCCBCCEEEEE--CCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG-GTC
T ss_pred             EEEEccCCCCCCeEEEc--ccccccCCCCcEEEEEEEEEEeCCCeEEEEec-CCc
Confidence            56666    34555443  212234679999999999996 999 999998 443

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.35  E-value=8.8e-07  Score=42.32  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++++..+
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~   43 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTI   43 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEE
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEE
Confidence            556778899999999999999999999998544433

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.35  E-value=3.8e-07  Score=41.39  Aligned_cols=34  Identities=21%  Similarity=0.520  Sum_probs=27.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +....+..|+.++|.|.+.|.|.  ++|+| +|..+.
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~k-dg~~l~   39 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEK-NGQELP   39 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEE-TTEECT
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEE-CCEECc
Confidence            44455667999999999999983  99999 787764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.35  E-value=4.9e-06  Score=44.89  Aligned_cols=47  Identities=23%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCC---CeEEEEee-EeeecCCeEEEEeC
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEG---GTIKLVCK-AKGYPRPHITWKRE   48 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~g~P~P~~~W~~~   48 (69)
                      ..|.|..+|.+..........+.+|   ..+.|.|. +.|.|.|.+.|+++
T Consensus       123 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A          123 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            4678888887743322556677777   77999998 78899999999983

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.35  E-value=3e-07  Score=49.96  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=27.6

Q ss_pred             EecCCCeEEEEeeEeeec-CCeEEEEeCCCcEEE
Q psy4606          22 MAPEGGTIKLVCKAKGYP-RPHITWKREDGQEII   54 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P-~P~~~W~~~~~~~~~   54 (69)
                      .+.+|+.+.|.|.+.|.| .|.+.|++ ++..+.
T Consensus       139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k-~~~~l~  171 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKHYNNITWYK-NNQELI  171 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCCCCEEEEEE-TTEECC
T ss_pred             EEeCCCcEEEEeccCCCCCCceEEEEE-CCccCC
Confidence            356799999999999999 99999999 776664

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.35  E-value=2.9e-06  Score=49.13  Aligned_cols=50  Identities=22%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             eeEEEEcCC---EEeecCCCceEEecCCCe-EEEEeeEee-ecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPP---DILNEESSSDIMAPEGGT-IKLVCKAKG-YPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p---~~~~~~~~~~~~~~~g~~-~~l~C~~~g-~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|   .+...  . .. ...+.. +.|.|.+.| +|.|.++|++ +++.+...
T Consensus       463 ~~l~V~~~~~~p~i~~~--~-~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~-~g~~l~~~  517 (581)
T 3o3u_N          463 YRVRVYQIPGKPEIVDS--A-SE-LTAGVPNKVGTCVSEGSYPAGTLSWHL-DGKPLVPN  517 (581)
T ss_dssp             EEEEEEBCCCCCEEESC--C-SE-ECTTSCEEEEEEEEEEEBSCCEEEEEE-TTEECCTT
T ss_pred             EEEEEEcCCCCCEEEcC--C-cc-cccCCceeEEEEECCCCCCCCeEEEEE-CCEECCCC
Confidence            357777643   33322  2 22 344444 567999998 6999999999 78776543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.35  E-value=1.4e-06  Score=50.27  Aligned_cols=50  Identities=18%  Similarity=0.364  Sum_probs=37.3

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEe----eecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK----GYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~----g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.....  +....+..|+.+.|.|.+.    |.|.|.+.|++ +|..+.
T Consensus       435 ~~l~V~~~~p~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k-~g~~~~  488 (585)
T 2ocw_A          435 VEIKIIEGEPNLKV--PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN-TGCQAL  488 (585)
T ss_pred             EEEEEecCcccccc--CCceeEecCCcEEEEEEecCCCCCCccEEEEEee-cCceee
Confidence            45677654433333  5567788999999999997    78899999999 676553

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.34  E-value=6.8e-07  Score=46.08  Aligned_cols=47  Identities=28%  Similarity=0.607  Sum_probs=32.5

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      .|.|..    +|.+...+ + ......|+.+.|.|.+.|. |.| .+.|++ +++.
T Consensus       117 ~l~V~~~~~~~P~i~~~~-~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~  169 (222)
T 1q9r_B          117 LVTVSAAKTTPPSVYPLA-P-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  169 (222)
T ss_dssp             EEEECSSCCBCCEEEEEC-C-CSCCCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             EEEeccCCCCCCeEEEcc-c-cccccCCCcEEEEEEEccEECCCCEEEEec-CCeE
Confidence            566663    45554431 1 1224579999999999995 999 999999 6654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.34  E-value=1.7e-06  Score=44.87  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus       134 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~  164 (238)
T 2p1y_A          134 PQSLTVWEGETAILNCSYENSAFDYFPWYQQ  164 (238)
T ss_dssp             CSEEEEETTSCEEEEEECCCTTCCEEEEEEE
T ss_pred             CceEEEeCCCeEEEEEEEecCCCCcEEEEEE
Confidence            5567788999999999999999999999984

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.34  E-value=2.7e-06  Score=42.77  Aligned_cols=32  Identities=6%  Similarity=0.056  Sum_probs=26.7

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +..+.|.|.+.|.|.|.+.|++ +++.+....+
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~-~g~~l~~~~~  141 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQ  141 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEE-TTEEEEEESS
T ss_pred             CCcEEEEEEecCCCCcEEEEEE-CCEECCCCCc
Confidence            4569999999999999999999 8887765443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.34  E-value=1.9e-06  Score=45.37  Aligned_cols=37  Identities=16%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +|.+...  +....+.+|+.++|.|.+.|.|.|.+.|++
T Consensus       138 ~~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  174 (256)
T 3umt_A          138 DIQLTQS--PSSLSASLGERVSITCRASQDIGSNLNWLQ  174 (256)
T ss_dssp             CCCEEEE--CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             ccEEEcC--CCeEEEECCCCEEEEEEEecCCCcEEEEEE
Confidence            5666655  666788999999999999999999999998

>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*

Probab=98.34  E-value=6.1e-07  Score=41.86  Aligned_cols=28  Identities=36%  Similarity=0.504  Sum_probs=22.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .|..+.|.|.+.| +|.. .++|.+ +|+.+
T Consensus        17 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~   46 (99)
T 3p73_B           17 AGTKNVLNCFAAGFHPPKISITLMK-DGVPM   46 (99)
T ss_dssp             TTSCEEEEEEEEEESSSCCEEEEEE-TTEEC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEE-CCeeC
Confidence            4678999999999 5654 799999 77765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.33  E-value=6.8e-07  Score=46.34  Aligned_cols=47  Identities=28%  Similarity=0.580  Sum_probs=31.9

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      .|.|..    +|.+.... +.. .+..|+.+.|.|.+.|. |.| .+.|++ ++..
T Consensus       118 ~L~V~~~~~~~P~v~~~~-~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~  170 (225)
T 1op3_H          118 VVTVSPASTKGPSVFPLA-PSS-KSTSGGTAALGCLVKDYFPEPVTVSWNS-GALT  170 (225)
T ss_dssp             EEEEESCSCBCCEEEEEC-CCT-TCCCCCEEEEEEEEEEEBSSCCEEECCT-TSCC
T ss_pred             EEecccCCCcCCeEEEec-ccc-cccCCCcEEEEEEEEeEECCCeEEEEec-CCCc
Confidence            567764    35554321 211 24579999999999995 888 999998 5543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.33  E-value=2.5e-07  Score=47.79  Aligned_cols=47  Identities=19%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEEe
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQEIII   55 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~~   55 (69)
                      ..+|.+...+ +....+..|..+.|.|.+.|. |. +.+.|++ +|+.+..
T Consensus       104 ~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  152 (214)
T 1ow0_A          104 TFRPEVHLLP-PPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPR  152 (214)
T ss_dssp             CCCCEEEEEC-CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEE-TTEECCG
T ss_pred             CCCCEEEecC-CCHHHhccCCceEEEEEEeeeECCCcEEEEEE-CCEECCC
Confidence            3567664331 221224568889999999994 64 4999999 7877643

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.32  E-value=8.5e-07  Score=50.14  Aligned_cols=46  Identities=17%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..+|.+  .  +....+.+|+.+.|.|.+.| .|.|.+.|++ ++..+
T Consensus       223 ~l~V~~~p~~--~--~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k-~g~~l  269 (423)
T 3qs7_E          223 TIDLNQTPQT--T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL  269 (423)
T ss_dssp             EEESSSCCCS--S--TTEEEEETTSCEEEEEEEEESSSCCCEEEEE-SSSBC
T ss_pred             EEEEecCCcc--C--CCceEEeCCCeEEEEEEEEcCCCCcEEEEEE-CCEEc
Confidence            3455555544  2  44667889999999999999 7889999999 66554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.32  E-value=2.8e-06  Score=43.09  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             eeEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           2 GYLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ..|.|..   +|.+...  + ...+.+|+.+.|.|.+.|. .|.+.|+| ++..+
T Consensus        91 ~~l~V~~~~~~p~i~~~--~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k-~g~~~  140 (198)
T 1ugn_A           91 LELVVTGAYIKPTLSAQ--P-SPVVNSGGNVTLQCDSQVA-FDGFILCK-EGEDE  140 (198)
T ss_dssp             EEEEEECSSCCCEEEEE--S-CSEEETTCCEEEEEECSSC-CSEEEEEE-C----
T ss_pred             EEEEEcccccCCccccC--C-ccccCCCCcEEEEEecCCC-CcEEEEEE-CCCcc
Confidence            4577776   4565543  2 2467789999999999998 78999999 66554

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.31  E-value=3.1e-07  Score=48.67  Aligned_cols=43  Identities=23%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+  .......|..+.|.|.+.| +|.+ .+.|++ +|+.+
T Consensus       129 ~~P~V~v~~--~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k-~g~~~  173 (240)
T 4acp_A          129 REPQVYTLP--PSRDELTKNQVSLTCLVKGFYPSDIAVEWES-NGQPE  173 (240)
T ss_dssp             BCCEEEEEC--CCGGGGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCCEEEEEC--CChHHhcCCceEEEEEEeEEeCCCcEEEEEE-CCEEC
Confidence            567665542  1112234889999999999 6776 799999 77664

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.31  E-value=1.3e-06  Score=45.22  Aligned_cols=47  Identities=23%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cC--CeEEEEeCCCcEE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR--PHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~--P~~~W~~~~~~~~   53 (69)
                      .|.|..    +|.+...  + ...+..|..+.|.|.+.|. |.  |.+.|++ ++..+
T Consensus       113 ~L~V~~~~~~~P~v~~~--~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~-~~~~~  166 (220)
T 2fbj_H          113 LVTVSAESARNPTIYPL--T-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDI  166 (220)
T ss_dssp             EEEECSSCCBCCEEEEE--C-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC-CCSSC
T ss_pred             EEEecCCCCCCCEEEEe--e-cccccCCCcEEEEEEEEeEECCCcEEEEEec-CCEec
Confidence            566663    4555443  2 1224679999999999995 87  7999999 56543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.30  E-value=3.5e-07  Score=47.35  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|..   +|.+...+ + ......|+.+.|.|.+.|. |.| .+.|++ +|..+.
T Consensus       125 ~l~V~~~~~~p~v~~~~-~-~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~  178 (233)
T 3bqu_C          125 NLEIKRADAAPTVSIFP-P-SSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQ  178 (233)
T ss_dssp             BC---CCCBCCEEEEEC-C-CHHHHHTTEEEEEEEEEEEBSSCEEEEEEE-C-----
T ss_pred             EEEEeCCCCCCEEEEeC-C-CHHhhcCCceEEEEEEccccCCceEEEEEE-CCeeCC
Confidence            355553   56665431 1 1122368899999999995 554 799999 776654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.30  E-value=6.5e-06  Score=41.20  Aligned_cols=32  Identities=9%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~  138 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRS-PRGKN  138 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEEC-TTSCE
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEe-CCCcc
Confidence            466789999999999999999999999 55443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.30  E-value=1.7e-06  Score=42.70  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeec-CCeEEEEeCCCcEEEe
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYP-RPHITWKREDGQEIII   55 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~~~~~~~~~   55 (69)
                      |.+...  +....+.+|+.+.|.|.+.|.| .+.+.|++ ++..+..
T Consensus         5 p~i~~~--p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~-~g~~~~~   48 (170)
T 3ry4_A            5 AVLKLE--PPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPT   48 (170)
T ss_dssp             CEEEEE--SCCSEEETTCEEEEEEESCCCSSSSCEEEEE-TTEECTT
T ss_pred             CEEEeC--CCCeEEECCCcEEEEEEecCCCCcceEEEEE-CCeEccc
Confidence            344444  5555678999999999999987 67999999 7776643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.30  E-value=2.1e-06  Score=44.51  Aligned_cols=49  Identities=20%  Similarity=0.454  Sum_probs=32.7

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~   53 (69)
                      .|.|..    +|.+...+ +. ..+..|+.+.|.|.+.|. |.| .+.|++.+|..+
T Consensus       116 ~L~V~~~~~~~P~i~~~~-~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (223)
T 1dee_B          116 LVTVSSGSASAPTLFPLV-SC-ENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (223)
T ss_dssp             EEEECSSCCBCCEEEEEE-CT-TCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBC
T ss_pred             EEEEccCCCCCCEEEEec-CC-cccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCcc
Confidence            566762    45554321 11 123578999999999995 888 999999455544

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.30  E-value=5.5e-07  Score=50.82  Aligned_cols=45  Identities=20%  Similarity=0.371  Sum_probs=29.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~   54 (69)
                      ..+|.+...+ +....+ .++.+.|.|.+.|.|.|  .+.|++ +|..+.
T Consensus       353 ~~~P~v~~~~-~~~~~~-~~~~~~l~C~~~g~~p~~~~v~W~k-~g~~l~  399 (457)
T 1hzh_H          353 PREPQVYTLP-PSRDEL-TKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  399 (457)
T ss_dssp             CBCCEEEEEC-CCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCCeEEEEC-CCcccc-CCCcEEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence            4577765542 221123 34459999999996544  899999 787764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.30  E-value=5.6e-07  Score=47.28  Aligned_cols=49  Identities=24%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|..   +|.+...+ + ......|+.+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       141 ~l~V~~~~~~P~v~~~~-~-~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~  194 (252)
T 3bkj_L          141 KLELKRADAAPTVSIFP-P-SSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQ  194 (252)
T ss_dssp             EEEECCCCBCCEEEEEC-C-CHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             EEEEeCCCcCcEEEEeC-C-ChhhcCCCcEEEEEEEeeEeCCCcEEEEEE-CCeecC
Confidence            466653   56665431 1 112336889999999999 5655 799999 777654

>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}

Probab=98.29  E-value=1.2e-06  Score=42.21  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+ ..  ....|..++|.|.+.| +|.. .++|.+ ||+.+
T Consensus        23 ~~P~V~v~~-~~--~~~~g~~~~L~C~~~gFyP~~I~v~W~k-nG~~~   66 (119)
T 3jts_B           23 RTPKIQVYS-RH--PAENGKSNFLNCYVSGFHPSDIEVDLLK-NGERI   66 (119)
T ss_dssp             BCCEEEEEE-SS--CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             cCCEEEEEc-cC--cccCCCcEEEEEEEeCccCCCEEEEEEE-CCEEC
Confidence            567665421 11  1235678999999999 6664 799999 78765

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.29  E-value=7.4e-07  Score=46.72  Aligned_cols=50  Identities=24%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEEe
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR-PHITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~~   55 (69)
                      .|.|..   +|.+...  ........|+.+.|.|.+.| .|. +.++|++ +|..+..
T Consensus       145 ~l~V~~~~~~P~v~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  199 (254)
T 2c1o_A          145 KLELKRADAAPTVSIF--PPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN  199 (254)
T ss_dssp             EEEECCCCBCCEEEEE--CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-SSSEECT
T ss_pred             EEEECCCCCCCeeEee--cCChhhccCCcEEEEEEEecccCCCcEEEEEE-CCCcccC
Confidence            466653   5666543  21122235779999999999 454 4699999 7777643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.29  E-value=6e-06  Score=42.72  Aligned_cols=30  Identities=27%  Similarity=0.609  Sum_probs=27.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +....+..|+.+.|.|.+.|.|.|.+.|++
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~  150 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLK  150 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEE
Confidence            455678889999999999999999999998

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.29  E-value=2.8e-06  Score=44.36  Aligned_cols=30  Identities=20%  Similarity=0.499  Sum_probs=27.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       142 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  171 (247)
T 2ghw_B          142 PATLSLSPGERATLSCRASQSVRSNLAWYQ  171 (247)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCccceEEEEE
Confidence            556678899999999999999999999998

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.29  E-value=1.3e-06  Score=45.61  Aligned_cols=51  Identities=27%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             eEEEEc------CCEEeecCCCceEEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606           3 YLDVVV------PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~   55 (69)
                      .|.|..      +|.+.... +....+..|..+.|.|.+.|.|.|  .+.|++ +|..+..
T Consensus       112 ~l~V~~~~~~~~~P~i~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~  170 (246)
T 4dzb_B          112 RLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  170 (246)
T ss_dssp             EEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             EEEEecCCCcccCCceEeec-CCchhccCCCcEEEEEEEccCcCCceEEEEEE-CCEECCC
Confidence            466663      55554321 333334568999999999997654  899999 7877653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.29  E-value=3.3e-06  Score=48.29  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             eeEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcE
Q psy4606           2 GYLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQE   52 (69)
Q Consensus         2 ~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~   52 (69)
                      ..|.|.    .+|.+...  +....+.+|+.+.|.|.+.|.|.|. +.|++ ++..
T Consensus       200 ~~l~V~~~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~-~~~~  252 (524)
T 2ec8_A          200 FILKVRPAFKAVPVVSVS--KASYLLREGEEFTVTCTIKDVSSSVYSTWKR-ENSQ  252 (524)
T ss_dssp             EECCEECCCCSCCEEECS--CSEEEEETTSCEEEEEEEEESSTTCEEEEEE-TTCS
T ss_pred             EEEEEEeCCCCCCcEEec--CCcceEEcCCcEEEEEEEecCCCcEEEEEEe-CCCC
Confidence            356665    67888765  5566888999999999999999997 99999 5544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.27  E-value=7.2e-06  Score=42.00  Aligned_cols=44  Identities=32%  Similarity=0.592  Sum_probs=33.0

Q ss_pred             eEEEEcC----CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           3 YLDVVVP----PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         3 ~l~V~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      .|.|..+    |.+... .+....+..|..+.|.|.+.|.|.|.+.|++
T Consensus       107 ~l~V~~~~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  154 (231)
T 3ojm_B          107 HLDVVERSRHRPILQAG-LPANASTVVGGDVEFVCKVYSDAQPHIQWIK  154 (231)
T ss_dssp             EEEEECCCCCCCEECTT-CSCCEEEETTCCEEEECCEECSSCCEEEEEE
T ss_pred             EEEEEcCCCCCCceeec-cCCceEEEeCCcEEEEEEEecCCCCEEEEEE
Confidence            4566642    333322 2456778899999999999999999999998

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.26  E-value=1.2e-06  Score=45.21  Aligned_cols=48  Identities=25%  Similarity=0.520  Sum_probs=32.5

Q ss_pred             eeEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           2 GYLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         2 ~~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      ..|.|..    +|.+...+ +. ..+..|..+.|.|.+.|. |.| .+.|++ ++..
T Consensus       111 ~~L~V~~~~~~~P~i~~~~-~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~  164 (215)
T 1c5d_H          111 TMVTVSSAQTTAPSVYPLA-PG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNS-GALS  164 (215)
T ss_dssp             EEEEECSSCCBCCCEEEEC-CC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGG-GTTC
T ss_pred             EEEEecCCCCCCCeEEecc-CC-hhhccCCcEEEEEEEeeeEcCCcEEEEcc-CCcc
Confidence            3567763    45554321 11 124578999999999995 999 999998 5543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.26  E-value=3.7e-07  Score=49.53  Aligned_cols=54  Identities=19%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEee-----EeeecCCeEEEEeCCCcEEEec
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCK-----AKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ..|.|..+|............+..|+.+.|.|.     +.|.|.|.+.|++ ++..+...
T Consensus       111 ~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k-~g~~~~~~  169 (339)
T 3o4o_C          111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKD  169 (339)
T ss_dssp             EEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEE-SSCBCCTT
T ss_pred             EEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEec-CCeeCCCC
Confidence            356666655432110122346788999999999     8899999999999 77776544

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.26  E-value=1.5e-06  Score=44.41  Aligned_cols=47  Identities=28%  Similarity=0.614  Sum_probs=32.4

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      .|.|.    .+|.+...  +....+..|+.+.|.|.+.|. |.| .+.|++ ++..
T Consensus       108 ~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~  160 (210)
T 3d9a_H          108 LVTVSAAKTTPPSVYPL--APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  160 (210)
T ss_dssp             EEEECCCCCBCCEEEEE--CCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             EEEeccCCCCCCEEEEe--cCCcccccCCcEEEEEEEeeEecCCcEEEEee-CCcc
Confidence            46665    24555443  211234679999999999996 999 999998 5543

>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}

Probab=98.26  E-value=7.5e-07  Score=42.92  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=28.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+ ..  ....|..+.|.|.+.| +|.. .++|.+ ||+.+
T Consensus        23 ~~P~V~v~~-~~--~~~~g~~~~L~C~v~gFyP~~I~v~W~k-nG~~~   66 (119)
T 3o81_A           23 LTPKVQVYS-RF--PASAGTKNVLNCFAAGFHPPKISITLMK-DGVPM   66 (119)
T ss_dssp             CSCEEEEEE-SS--CCCTTSCEEEEEEEEEESSSCCEEEEEE-TTEEC
T ss_pred             cCCceEEEc-CC--cccCCCcEEEEEEEecccCCCcEEEEEE-CCEEC
Confidence            567665421 11  1234678999999999 5654 799999 78765

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.26  E-value=1.2e-06  Score=44.11  Aligned_cols=35  Identities=17%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             CceEEecCCCeEEEEee-EeeecC-CeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCK-AKGYPR-PHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~-~~g~P~-P~~~W~~~~~~~~   53 (69)
                      +....+.+|+.+.|.|. +.|.|. +.+.|++ ++..+
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~-~~~~~   51 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPV   51 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEE-SSTTC
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEE-CCcee
Confidence            56678899999999999 899999 9999999 55444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.26  E-value=4e-06  Score=44.75  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=36.2

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEEecCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +|.+...+ .....+.+|+.+.|.|.+. |.|.|.+.|++ ++..+....+
T Consensus       106 ~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~i~~~~~  154 (312)
T 2y23_A          106 FPTVPVKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPK  154 (312)
T ss_dssp             SCBCCEEE-EEEEEECSSSCEEEEEEESCCCSSCEEEEEE-TTEEECSSSS
T ss_pred             CCcccccc-CCceEEeeCCCEEEEEEEEeCCCCCEEEEEE-CCEECeeCCc
Confidence            55544331 2367788999999999999 89999999999 7877765443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.25  E-value=7.8e-07  Score=46.88  Aligned_cols=44  Identities=32%  Similarity=0.646  Sum_probs=30.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +|.+.... +....+..|..+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       122 ~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~l~  167 (252)
T 1oga_E          122 PPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH  167 (252)
T ss_dssp             CCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             CCeEEEEC-CChhhhccCCceEEEEEEeeEcCCCcEEEEEE-CCEECC
Confidence            55554321 22222346889999999999 4765 999999 787664

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.25  E-value=7.7e-06  Score=41.58  Aligned_cols=30  Identities=13%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             CCC-eEEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          25 EGG-TIKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        25 ~g~-~~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      .|. .+.|.|.+.| .|.|.+.|++ +++.+..
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~-~g~~l~~  153 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEA-LGNTLSS  153 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEE-TTEEEES
T ss_pred             CCCceEEEEEEEecCCCceEEEEEe-CCEEcCC
Confidence            354 7999999999 5689999999 7776653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.25  E-value=1.8e-06  Score=43.74  Aligned_cols=31  Identities=39%  Similarity=0.835  Sum_probs=28.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~   38 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFV   38 (212)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCCCCCcEEEEEEC
Confidence            5667788999999999999999999999994

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.24  E-value=3.3e-06  Score=43.81  Aligned_cols=47  Identities=28%  Similarity=0.544  Sum_probs=30.7

Q ss_pred             eeEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCc
Q psy4606           2 GYLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQ   51 (69)
Q Consensus         2 ~~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~   51 (69)
                      ..|.|..    +|.+...+ + ...+..|+.+.|.|.+.|. |.| .+.|++ ++.
T Consensus       119 ~~L~V~~~~~~~P~i~~~~-~-~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~-~~~  171 (228)
T 3bae_H          119 TTLTVSSAKTTAPSVYPLA-P-VCGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSL  171 (228)
T ss_dssp             EEEEECSCCCBCCEEEEEC-C------CCSEEEEEEEEEEEBSSCCEEEEGG-GTC
T ss_pred             EEEEecCCCCCCCEEEEec-c-cccccCCCCEEEEEEEccEeCCCEEEEEee-CCc
Confidence            3566763    46555431 2 2234679999999999995 988 999998 554

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.24  E-value=6.6e-07  Score=47.73  Aligned_cols=47  Identities=28%  Similarity=0.576  Sum_probs=25.4

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      .|.|..    +|.+.... +. ..+..|..+.|.|.+.|. |.| .+.|++ ++..
T Consensus       123 ~L~V~~~~~~~P~v~~~~-p~-~~~~~g~~v~L~C~~~g~~P~pi~v~W~k-~g~~  175 (257)
T 3bn9_D          123 MVTVSSASTKGPSVFPLA-PS-SKSTSGGTAALGCLVKDYFPEPVTVSWNS-GALT  175 (257)
T ss_dssp             EEEECSSCCBCCEECCCC-C------------CCCEEEEEBSSCCEEEETT-TTCC
T ss_pred             EEEecCCCCcCCcEEEec-Cc-ccccCCCcEEEEEEEeeEECCCcEEEEee-CCCc
Confidence            566764    46654331 22 234578999999999994 888 999999 5554

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.24  E-value=2e-06  Score=45.53  Aligned_cols=50  Identities=28%  Similarity=0.512  Sum_probs=33.8

Q ss_pred             eEEEEc------CCEEeecCCCceEEecCCCeEEEEeeEeeecC-C-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV------PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-P-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P-~~~W~~~~~~~~~   54 (69)
                      .|.|..      +|.+.... +....+..|+.+.|.|.+.|.|. | .+.|++ +|+.+.
T Consensus       133 ~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~-~g~~l~  190 (268)
T 3pl6_D          133 RLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH  190 (268)
T ss_dssp             EEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-SSSEEC
T ss_pred             EEEEecCcccccCCceEEeC-CCcccccCCCceEEEEEECcccCCCeEEEEEE-CCEECC
Confidence            466664      56544321 33333445899999999999555 4 899999 787774

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.23  E-value=5.6e-06  Score=41.67  Aligned_cols=41  Identities=12%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      ..+|.+...  +.. .+.+|+.+.|.|.+.| |.|.+.|+| ++..
T Consensus         6 ~~~P~i~~~--p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k-~g~~   46 (184)
T 2gi7_A            6 LPKPSLQAL--PSS-LVPLEKPVTLRCQGPP-GVDLYRLEK-LSSS   46 (184)
T ss_dssp             BCCCEEEEE--SCS-EEETTCCEEEEEECST-TCSEEEEEE-TTTC
T ss_pred             CCCCeEEeC--CCc-cccCCCcEEEEEeCCC-CCCEEEEEE-CCcc
Confidence            457777765  433 6789999999999988 889999999 5543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.23  E-value=1.5e-06  Score=46.12  Aligned_cols=50  Identities=32%  Similarity=0.579  Sum_probs=34.3

Q ss_pred             eEEEEc------CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVVV------PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|..      +|.+.... +....+..|..+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       136 ~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~  193 (270)
T 3qib_D          136 RLLVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH  193 (270)
T ss_dssp             EEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             EEEEccccccccCCceEEEC-CCccccccCCceEEEEEecceeCCCeEEEEEE-CCEECC
Confidence            466665      56544321 22223345899999999999 7878 899999 787774

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.22  E-value=3.2e-06  Score=39.41  Aligned_cols=31  Identities=29%  Similarity=0.541  Sum_probs=27.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.|.|.+.|++.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~   38 (108)
T 1jhl_L            8 PSYLVASPGETITINCRASKSISKSLAWYQE   38 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeeEEcCCCCEEEEeEECCCCCceEEEEEE
Confidence            5557788999999999999999999999984

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.22  E-value=1.8e-06  Score=50.13  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=36.0

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..+|.+  .  +....+.+|+.+.|.|.+. |.|.|.++|++ ++..+
T Consensus       223 ~l~V~~~p~~--~--p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k-~g~~l  269 (527)
T 3qs9_E          223 TIDLNQTPQT--T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL  269 (527)
T ss_dssp             EEESSSCCCC--S--CCEEEECTTSCEEEEEEEEESSSCCCEEEEC-SSSCC
T ss_pred             EEEEeccCcc--C--CCceEEeCCCeEEEEEEEccCCCCeEEEEEE-CCEEC
Confidence            4555566654  2  5567888999999999997 89999999999 66554

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.22  E-value=6.6e-06  Score=42.36  Aligned_cols=50  Identities=24%  Similarity=0.458  Sum_probs=36.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC--eEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP--HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~~   54 (69)
                      .|.|+.+|...... +......+|..++|.|.+.| .|.+  .++|++ +++.+.
T Consensus        79 ~l~V~~~P~~v~i~-~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~k-g~~~l~  131 (185)
T 1iam_A           79 FLTVYWTPERVELA-PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GEKELK  131 (185)
T ss_dssp             EEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEE
T ss_pred             EEEEeCCCCCCEEc-cCCccccCCCcEEEEEEcCCccCCCCcEEEEEe-CCEEcc
Confidence            56777777544431 33345789999999999999 7775  489999 777664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.22  E-value=1.4e-06  Score=47.07  Aligned_cols=45  Identities=27%  Similarity=0.491  Sum_probs=33.4

Q ss_pred             eEEEEcC----CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           3 YLDVVVP----PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         3 ~l~V~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .|.|...    |.+... .+....+..|+.+.|.|.+.|.|.|.+.|++.
T Consensus       211 ~l~V~~~~~~~p~~~~~-~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~  259 (334)
T 1ry7_B          211 TLDVLERSPHRPILQAG-LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH  259 (334)
T ss_dssp             EEEEECCCCSSCBCCTT-CSCCEEEESSCCEEECCCCBCSSCEEEEEEEC
T ss_pred             EEEEecCCCCCCceEec-CCCceEEeCCCCEEEEEEEecCCCCeEEEEEC
Confidence            4666642    333321 24566788999999999999999999999983

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.22  E-value=3.8e-06  Score=43.63  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  + ...+.+|+.++|.|.+.+.|.|.+.|+| +|..+
T Consensus        97 ~l~V~~~~~~P~i~~~--p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k-~g~~~  146 (218)
T 1uct_A           97 ELVVTGLYGKPFLSAD--R-GLVLMPGENISLTCSSAHIPFDRFSLAK-EGELS  146 (218)
T ss_dssp             EEEEECSSCCCEEEES--S-CSEECTTCCCEEEEECSSSCCSEEEEEE-TTCSS
T ss_pred             EEEEcCcccCCEEEeC--C-CCccCCCCCEEEEEeCCCCCCCEEEEEE-CCCcc
Confidence            456654   5666544  3 3467899999999977788889999999 66543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.22  E-value=6.2e-06  Score=43.03  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..|.|..++....   +....+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+..
T Consensus        76 ~~l~v~~~~~~~~---~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~-~g~~~~~  126 (262)
T 3rjd_A           76 IQLEIHRGWLLLQ---VSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFKF  126 (262)
T ss_dssp             EEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGGCCCEEEEEEE-TTEEEEE
T ss_pred             EEEEEeccceEec---CCCeEEecCCeEEEEEEccCCCCCceEEEEE-CCccccc
Confidence            4577777665544   334567789999999999 679999999999 7776643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.21  E-value=9.9e-07  Score=48.01  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEe----eecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAK----GYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~----g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|.+..........+..|+.+.|.|.+.    |.|.|.+.|++ ++..+..
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~-~g~~l~~  273 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDD  273 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEES-SCC----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEE-CCEEccc
Confidence            6776554111112677899999999999    57999999999 7766544

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.21  E-value=5.7e-06  Score=39.08  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~~~~   51 (69)
                      +..+.+.+|+.+.|.|.+.|.|  .+.+.|++ ++.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~-~~~   49 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PSS   49 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEEC-SCT
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEEC-CCc
Confidence            3345677899999999999944  57899999 444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.21  E-value=2.9e-06  Score=42.99  Aligned_cols=41  Identities=10%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .+|.+...  +.. .+.+|+.+.|.|.+.| |.|.+.|+| ++..+
T Consensus         4 ~~P~i~~~--p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~   44 (196)
T 3p2t_A            4 PKPTLWAE--PGS-VISWGNSVTIWCQGTL-EAREYRLDK-EESPA   44 (196)
T ss_dssp             CCCEEEEE--SCS-EEETTCCEEEEEECCT-TCCEEEEEE-TTSCS
T ss_pred             CCCEEEcc--CCC-cCCCCCcEEEEeeCCC-CCCEEEEEE-CCCCC
Confidence            35777665  444 6778999999999999 889999999 66544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.20  E-value=5.6e-06  Score=46.82  Aligned_cols=43  Identities=23%  Similarity=0.514  Sum_probs=34.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  +....+.+|+.++|.|.+ +.|.|.+.|+++++..+.
T Consensus       341 ~P~i~~~--~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~  383 (440)
T 3zyj_A          341 APVIVEP--PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMT  383 (440)
T ss_dssp             CCCEEEC--CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEE
T ss_pred             CCccccc--ccceeeccCceEEEEeec-CCCCCceEEEeCCCceee
Confidence            5666655  667888999999999999 679999999996565554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.20  E-value=2.7e-06  Score=44.29  Aligned_cols=50  Identities=30%  Similarity=0.579  Sum_probs=34.0

Q ss_pred             eEEEE------cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           3 YLDVV------VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|.|.      .+|.+.... +....+..|..+.|.|.+.| .|.| .+.|++ +|+.+.
T Consensus       109 ~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~l~  166 (240)
T 3q5y_A          109 RLTVLEDLRNVTPPKVSLFE-PSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVH  166 (240)
T ss_dssp             EEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             EEEEeccccCCCCCeeEEeC-CchhhcccCCceEEEEEEeeEECCCeEEEEEE-CCEECc
Confidence            45665      355554321 23333446889999999999 7777 789999 787764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.19  E-value=1.1e-05  Score=42.15  Aligned_cols=49  Identities=20%  Similarity=0.508  Sum_probs=29.7

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCC-CeEEEEeeEeee-cCC-eEEEEeCCCcEE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEG-GTIKLVCKAKGY-PRP-HITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g-~~~~l~C~~~g~-P~P-~~~W~~~~~~~~   53 (69)
                      .|.|..    +|.+.... +. .....| +.+.|.|.+.|. |.| .+.|++.+|+.+
T Consensus       115 ~L~V~~~~~~~P~v~~~~-p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (232)
T 1dn0_B          115 LVTVSSGSASAPTLFPLV-SC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (232)
T ss_dssp             EEEECSSCCBCCEEEEEE-CC-------CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             EEEEccCCCCCCceEEec-cc-cccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCce
Confidence            566764    35544321 11 123467 899999999994 888 999998556554

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.19  E-value=3e-06  Score=44.20  Aligned_cols=51  Identities=31%  Similarity=0.595  Sum_probs=34.4

Q ss_pred             eEEEE------cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606           3 YLDVV------VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      .|.|.      .+|.+.... +....+..|..+.|.|.+.| .|.| .+.|++ +|+.+..
T Consensus       111 ~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~-~g~~l~~  169 (245)
T 4ei6_B          111 RLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  169 (245)
T ss_dssp             EEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             EEEEecccCCCCCceEEEeC-CCcccccCCCceEEEEEEeeEeCCCeEEEEEE-CCEECCC
Confidence            46666      356554321 33233456899999999999 5666 899999 7877653

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.19  E-value=9.3e-06  Score=41.35  Aligned_cols=46  Identities=13%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  +. ..+.+|+.++|.|.+.+ |.|.+.|+| +|..+
T Consensus        99 ~l~V~~~~~~p~i~~~--p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  147 (201)
T 1nkr_A           99 DIVIIGLYEKPSLSAQ--PG-PTVLAGENVTLSCSSRS-SYDMYHLSR-EGEAH  147 (201)
T ss_dssp             EEEEECSSCCCEEEEE--SC-SEECTTCEEEEEEEESS-CCSEEEEEE-TTCSS
T ss_pred             EEEeeccCCCCceecC--CC-CccCCCCeEEEEEeCCC-CCceEEEEE-CCccc
Confidence            566764   4666554  32 35789999999999987 678999999 66543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.18  E-value=1.3e-06  Score=49.14  Aligned_cols=44  Identities=16%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      ..+|.+...+... ..+ .++.+.|.|.+.| .|.| .++|++ +|..+
T Consensus       344 ~~~P~v~~~~~~~-~~~-~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~l  389 (444)
T 1igt_B          344 VRAPQVYVLPPPE-EEM-TKKQVTLTCMVTDFMPEDIYVEWTN-NGKTE  389 (444)
T ss_dssp             CBCCEEEEECCCG-GGT-TSSEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCCCEEEEeCCCh-HHc-cCCeEEEEEEEEeeeCCCCEEEEEE-CCEEc
Confidence            4677765442121 112 3456999999999 6777 899999 77665

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.18  E-value=6.8e-06  Score=43.21  Aligned_cols=36  Identities=11%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEe
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKR   47 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~   47 (69)
                      |.+...  +....+.+|+.++|.|.+.|.|. |.+.|++
T Consensus       150 ~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          150 IVLTQA--PGTLSLSPGERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             CCEEEE--CSEEEECTTSCEEEEEEESSCCTTCCEEEEE
T ss_pred             eEEEec--CCeEEEeCCCCEEEEEEECCCcCCeeEEEEE
Confidence            445555  66778899999999999999876 9999997

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.17  E-value=4.8e-07  Score=50.78  Aligned_cols=44  Identities=18%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEI   53 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~   53 (69)
                      ..+|.+...+...  ....|+.+.|.|.+.|. |.+ .++|++ +|+.+
T Consensus       334 ~~~P~v~~~~~~~--~~~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~l  379 (434)
T 1igy_B          334 PRAPQVYTIPPPK--EQMAKDKVSLTCMITDFFPEDITVEWQS-DGQAP  379 (434)
T ss_dssp             CBCCCCEEECCCS--SSSSSSEEEEEEEEEEEBCSCEEEEEEE-TTSCC
T ss_pred             CcCCEEEEECCCH--HHhcCCcEEEEEEEEeeECCCeEEEEEE-CCEec
Confidence            3567665432121  12357789999999995 443 899999 77665

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.17  E-value=9.3e-06  Score=46.92  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeE----EEEe
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHI----TWKR   47 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~----~W~~   47 (69)
                      ..|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+    .|++
T Consensus       324 ~~l~V~~~p~~~~~--~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~  371 (585)
T 2ocw_A          324 WQLFVNEESTIPRS--PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG  371 (585)
T ss_pred             EEEEEecccccccC--CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEc
Confidence            45788888888765  66677889999999999999999987    7988

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.16  E-value=2.7e-06  Score=47.48  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      .|.|..   +|.+...  .......+|+.+.|.|.+.| .|.| .+.|++ +|..+..
T Consensus       107 ~l~V~~~~~~P~v~~~--~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~  161 (438)
T 1qgc_4          107 KLDLKRADAAPTVSIF--PPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN  161 (438)
T ss_dssp             EEEECCCCBCCEEEEE--CCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             eEEecCCCCCCEEEec--CCChhhccCCceEEEEEEccccCCCcEEEEEE-CCEEcCC
Confidence            566652   6665543  11112235789999999998 7888 999999 7877643

>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...

Probab=98.16  E-value=1.9e-06  Score=44.04  Aligned_cols=45  Identities=22%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ...+|.+...+  .. ....+..++|.|.+.| +|.+ .++|.+ +|+.+.
T Consensus        83 r~~~P~v~v~~--~~-~~~~~~~~~L~C~a~gFyP~~i~v~W~k-~g~~~~  129 (181)
T 3c5j_A           83 TNVPPEVTVLT--NS-PVELREPNVLICFIDKFTPPVVNVTWLR-NGKPVT  129 (181)
T ss_dssp             CCBCCEEEEEE--SS-CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cccCCceeccc--CC-hhhcCCCCeEEEEEeEEECCCCEEEEEE-CCEECC
Confidence            34677765431  11 1234677999999999 7765 799999 887764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.15  E-value=2.1e-06  Score=46.92  Aligned_cols=47  Identities=23%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCcE
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~   52 (69)
                      .|.|.    .+|.+...  .....+.+|+.+.|.|.+.|. |. |.+.|++ ++..
T Consensus       110 ~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~  162 (344)
T 1za6_B          110 LVTVSSASTKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GALT  162 (344)
T ss_dssp             EEEECSSCCBCCEEEEE--CCSCTTTSSSEEEEEEEEEEEBSSCCCEEETT-TTBC
T ss_pred             EEEEecCCCCCCeEEEc--cccccccCCCcEEEEEEEeeEECCCeEEEEec-CCcc
Confidence            56776    34555433  212234689999999999996 75 7999998 6654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.14  E-value=8.7e-06  Score=41.10  Aligned_cols=46  Identities=13%  Similarity=0.222  Sum_probs=32.9

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  + ...+.+|+.+.|.|.+.+ +.|.+.|+| ++..+
T Consensus        90 ~l~V~~~~~~p~i~~~--p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  138 (188)
T 1oll_A           90 DLVVTEMYDTPTLSVH--P-GPEVISGEKVTFYCRLDT-ATSMFLLLK-EGRSS  138 (188)
T ss_dssp             EEEEESCSCCCEEEEE--S-CSEEETTCEEEEEEECSS-SCSEEEEEE-ESSSC
T ss_pred             EEEecccCCCCeEEEC--C-CCccccCCEEEEEEEcCC-CCCEEEEEE-CCccc
Confidence            456653   5666554  3 245779999999999876 567999999 66544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.14  E-value=5.8e-06  Score=42.58  Aligned_cols=29  Identities=31%  Similarity=0.946  Sum_probs=24.5

Q ss_pred             cCCCeEEEEeeEee-ecC-C-eEEEEeCCCcEE
Q psy4606          24 PEGGTIKLVCKAKG-YPR-P-HITWKREDGQEI   53 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~-P-~~~W~~~~~~~~   53 (69)
                      ..|..+.|.|.+.| .|. | .+.|++ +++.+
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~-~g~~~  167 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSE-SGQGV  167 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESC-CSTTC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEE-CCEEC
Confidence            57999999999999 887 4 899998 66654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.14  E-value=5.4e-06  Score=41.39  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKREDGQEIII   55 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~   55 (69)
                      ..+.+|+.+.|.|.+.|.|.|  .+.|++ ++..+..
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k-~~~~l~~   43 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKE   43 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEES-SSEEEEC
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEe-CCEEeec
Confidence            356789999999999998888  999999 7777654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.14  E-value=4.4e-06  Score=45.45  Aligned_cols=52  Identities=23%  Similarity=0.280  Sum_probs=36.5

Q ss_pred             eeEEEEcCCEEeecC--CCceEEecCCCeEEEEeeE-----eeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEE--SSSDIMAPEGGTIKLVCKA-----KGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~--~~~~~~~~~g~~~~l~C~~-----~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|......  .+....+..|+.+.|.|.+     .|.|.|.+.|++ ++..+.
T Consensus       109 ~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k-~~~~l~  167 (349)
T 4dep_C          109 FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM-GCYKIQ  167 (349)
T ss_dssp             EEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE-TTEECC
T ss_pred             EEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee-CCEECC
Confidence            346777655422210  1335567889999999986     789999999999 777654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.14  E-value=5.9e-07  Score=46.70  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      ..+|.+...  +. ..+.+|+.++|.|.+.| |.|.+.|+| +|..+
T Consensus         7 ~~~P~i~~~--p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k-~g~~~   48 (218)
T 1uct_A            7 FPMPFISAK--SS-PVIPLDGSVKIQCQAIR-EAYLTQLMI-IKNST   48 (218)
T ss_dssp             SCCCCEEES--SC-SEEETTCCEEEEECCCT-TCSEEEEEE-EETTE
T ss_pred             CCCCEEEec--CC-CccCCCCCEEEEEEcCC-CCCEEEEEE-CCCcc
Confidence            356777765  33 36788999999999988 789999999 66554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.13  E-value=6.9e-06  Score=43.48  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             eeEEEEcCCE-EeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPD-ILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~   54 (69)
                      ..|.|..+|. +...  +....+.+|+.+.|.|.+.|.|.+. +.|++.++..+.
T Consensus        81 ~~l~V~~~~~~~~~~--~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~  133 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLL--AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL  133 (289)
T ss_dssp             EEEEECCSSCSEEES--CSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECC
T ss_pred             EEEEEeCCCcceecc--cceEEEecCCceEeEEEccCCCcceEEEEEecCCeecC
Confidence            3566776665 3444  5667888999999999999977765 999864555543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.12  E-value=1.1e-05  Score=43.34  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..+|.+...  ........+..+.+.|.+. |.|.|.+.|++ ++..+
T Consensus       111 ~l~v~~~P~~~~~--~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~-~~~~~  159 (313)
T 4fqp_A          111 WLRVLAKPQNTAE--VQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGM  159 (313)
T ss_dssp             EECCBBCCEEEEE--ECCBCCCSSCEEEEEEEEEEEBSCCEEEEEE-TTCCE
T ss_pred             eeeeccCCcceec--ccceEeecCceEEEEEEccCccCCcEEEeec-CCccc
Confidence            4556677876654  4445566788899999886 69999999999 55544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.12  E-value=2.3e-06  Score=46.77  Aligned_cols=44  Identities=23%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeee-c-CCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-P-RPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P-~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...+ +... ...|+.+.|.|.+.|. | .+.+.|++ +|..+.
T Consensus       241 ~~P~v~~~~-~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  286 (344)
T 1za6_B          241 REPQVYTLP-PSRD-ELTKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  286 (344)
T ss_dssp             BCCEEEEEC-CCGG-GGGSSSEEEEEEEEEEBSSCCEEEEES-SSSCCC
T ss_pred             cCCEEEEeC-CChH-hccCCcEEEEEEEeeEECCCeEEEEEE-CCeECC
Confidence            566655432 1111 2346679999999995 4 36899999 776653

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.12  E-value=7.3e-06  Score=43.08  Aligned_cols=36  Identities=19%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEe
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKR   47 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~   47 (69)
                      +.+...  +....+.+|+.++|.|.+.+.|.| .+.|++
T Consensus       142 ~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  178 (257)
T 3gkz_A          142 IVLTQS--PAIMSASPGEKVTLTCSASSSVSSSHLYWYQ  178 (257)
T ss_dssp             CCEECS--CSEEEECTTCCEEEEEEESSCCCGGGEEEEE
T ss_pred             eEEEcC--CceEEEeCCCcEEEEEEEccCccceEEEEEE
Confidence            445444  566788999999999999998888 999998

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.12  E-value=3e-06  Score=43.84  Aligned_cols=44  Identities=16%  Similarity=0.118  Sum_probs=30.4

Q ss_pred             cCCEEeecCCCceEE-ecCCCeEEEEeeEeee---cC-CeEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIM-APEGGTIKLVCKAKGY---PR-PHITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~g~---P~-P~~~W~~~~~~~~   53 (69)
                      .+|.+...+ +.... +.+|+.+.|.|.+.|.   |. |.+.|++ ++..+
T Consensus         8 ~~p~v~~~p-p~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k-~~~~~   56 (218)
T 2rgs_A            8 GGPSVFIFP-PNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFV-NNVEV   56 (218)
T ss_dssp             -CCEEEEEC-CCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEE-TTEEE
T ss_pred             CCCEEEEEC-cCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEE-CCccc
Confidence            456665542 22222 6789999999999997   44 7999999 66554

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.12  E-value=6.3e-06  Score=42.82  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=28.3

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~   52 (69)
                      .|.|..    +|.+.... +. ..+..|+.+.|.|.+.|. |.| .+.|++ ++..
T Consensus       111 ~L~V~~~~~~~P~v~~~~-~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~  163 (227)
T 1mju_H          111 LVTVSAAKTTAPSVYPLA-PV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNS-GSLS  163 (227)
T ss_dssp             EEEECSSCCBCCEEEEEC-CC-C------CEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             EEEEcCCCCCCCEEEEec-CC-ccccCCCcEEEEEEeecEeCCCeEEEEec-CCCc
Confidence            566764    45554331 22 234579999999999994 888 999998 5544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.12  E-value=2.1e-06  Score=47.90  Aligned_cols=48  Identities=27%  Similarity=0.586  Sum_probs=33.7

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCcEE
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~~~   53 (69)
                      .|.|.    .+|.+...  .....+..|+.+.|.|.+.|. |.| .+.|++ ++..+
T Consensus       333 ~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~~  386 (438)
T 1qgc_4          333 VVTVSAAKTTPPSVYPL--APGSAAAAASMVTLGCLVKGYFPEPVTVTWNS-GSLSS  386 (438)
T ss_dssp             EEEECSSCCBCCEEEEE--CCCGGGCCSSEEEEEEEEESCBSSCCEEEEGG-GTCCS
T ss_pred             EEEEecCCCCCCeEEEc--CcccccccCCcEEEEEEeccccCCCcEEEEec-CCCCC
Confidence            56665    35655443  212235679999999999996 999 999998 66554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.11  E-value=2.9e-06  Score=44.77  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=26.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       146 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  175 (257)
T 1f3r_B          146 PSLLSASVGDRVTLSCKGSQNINNYLAWYQ  175 (257)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCcCCCcEEEEE
Confidence            445668899999999999999989999998

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.11  E-value=1e-05  Score=41.51  Aligned_cols=28  Identities=25%  Similarity=0.751  Sum_probs=24.7

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~   38 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQ   38 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEET
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECC
Confidence            4455899999999999999999999983

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.11  E-value=3.7e-06  Score=47.50  Aligned_cols=46  Identities=24%  Similarity=0.477  Sum_probs=32.4

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCc
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~   51 (69)
                      .|.|..    +|.+...  .....+.+|+.+.|.|.+.|. |. |.+.|++ ++.
T Consensus       122 ~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~~~  173 (457)
T 1hzh_H          122 TVIVSSASTKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GAL  173 (457)
T ss_dssp             EEEECSCCCBCCEEEEE--CCCSCCCTTCCEEEEEEEESBBSCCCEEEETT-TTB
T ss_pred             EEEecCCCCCCCeEEec--CccccccCCCcEEEEEEEeEEeCCCeEEEEEe-CCE
Confidence            566664    5655443  222235689999999999995 76 8999998 564

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.11  E-value=3.8e-06  Score=44.54  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=36.2

Q ss_pred             eeEEEEcCCEE-eecCCCceEEecCCCeEEEEeeEeeecC--CeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDI-LNEESSSDIMAPEGGTIKLVCKAKGYPR--PHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~~g~P~--P~~~W~~~~~~~~~   54 (69)
                      .+|.|..+|.. ...  +....+.+|+.+.|.|.+.| |.  |.+.|++.++..+.
T Consensus        81 ~~l~V~~~~~~~~~~--~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~  133 (292)
T 4dkd_C           81 IHLYVKDPARPWNVL--AQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM  133 (292)
T ss_dssp             ECCEECCSSCCEEES--CSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC
T ss_pred             EEEEEcCcccccccc--CCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc
Confidence            35667776653 333  55677889999999999998 54  88999984455543

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.10  E-value=1.1e-05  Score=38.63  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=29.2

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQE   52 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~   52 (69)
                      .....+..|+.+.|.|.+.+ .|.|.++|.|.+++.
T Consensus        21 ~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~   56 (122)
T 1xau_A           21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTI   56 (122)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSS
T ss_pred             eccEEEecCCeEEEEeEecCCCCCCcEEEEecCCee
Confidence            55667889999999999977 789999999965543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.10  E-value=5.2e-06  Score=42.31  Aligned_cols=43  Identities=26%  Similarity=0.466  Sum_probs=29.9

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeee----cCCeEEEEeCCCc
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGY----PRPHITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~----P~P~~~W~~~~~~   51 (69)
                      .|.|..   +|.+..   +.  .+.+|..+.|.|.+.|.    |.|.+.|++ ++.
T Consensus       117 ~l~V~~~~~~p~i~~---~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~-~~~  166 (214)
T 2zg1_A          117 NLEVTALIEKPDIHF---LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTG-NAL  166 (214)
T ss_dssp             EEEEECCCCCCEEC-----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEES-STT
T ss_pred             EEEEecCCCCCceec---Cc--cccCCCeEEEEEEeccCCCCCCCceEEEeC-CCC
Confidence            466665   344432   22  25689999999999874    899999999 443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.10  E-value=2.6e-06  Score=46.71  Aligned_cols=40  Identities=15%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED   49 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~   49 (69)
                      .+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus       157 ~~P~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~  196 (347)
T 2ifg_A          157 GVPTLKVQ--VPNASVDVGDDVLLRCQVEGRGLEQAGWILTE  196 (347)
T ss_dssp             CCCEEEEE--CCSSCCBTTCCEEEEEEEECSSCCCCCEEESC
T ss_pred             CCCceecc--CCceEEeCCCcEEEEEEEecCCCCEEEEEcCC
Confidence            46777766  55667889999999999999999999999943

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.09  E-value=4.5e-06  Score=43.93  Aligned_cols=29  Identities=34%  Similarity=0.756  Sum_probs=24.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|..+.|.|.+.| .|.| .++|++ +|..+.
T Consensus       138 ~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~l~  168 (253)
T 3to4_D          138 HTQKATLVCLATGFYPDHVELSWWV-NGKEVH  168 (253)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             cCCceEEEEEEceEECCcEEEEEEE-CCEECC
Confidence            4689999999999 7878 899999 787764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.08  E-value=1.7e-05  Score=40.71  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             eEEEEc--CCEEeecCCCceEEecCCCeEEEEeeEeeecC--CeEEEEeCCCcE
Q psy4606           3 YLDVVV--PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR--PHITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~--P~~~W~~~~~~~   52 (69)
                      .|.|..  +|.+...+ ...+.+.+|+.+.|.|.+.|.|.  +.+.|++ ++..
T Consensus        96 ~l~v~~~~~p~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~-~g~~  147 (213)
T 2x1w_L           96 IVVVVGYRIYDVVLSP-SHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PSSK  147 (213)
T ss_dssp             EEEECBCCEEEEEEES-CSCEEEETTCCEEEEEEEEECTTBCCEEEEEC-SCSS
T ss_pred             EEEEeCCcccceEEcC-CCCeEEcCCCCEEEEEEEECCCCCceEEEEEe-cCCc
Confidence            344543  34444432 44457889999999999999654  5799998 4543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.08  E-value=1e-05  Score=43.33  Aligned_cols=50  Identities=26%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~   53 (69)
                      .+.+..+|.......+.......+..+.|.|.+ .|.|.|.+.|++ ++..+
T Consensus       106 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~-~~~~~  156 (308)
T 4fom_A          106 TVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEG-DLGEM  156 (308)
T ss_dssp             EEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECC-CSSBC
T ss_pred             EEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEE-CCccc
Confidence            455666665443222445556678899999986 579999999999 55544

>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*

Probab=98.08  E-value=2.3e-06  Score=44.35  Aligned_cols=46  Identities=22%  Similarity=0.435  Sum_probs=31.5

Q ss_pred             EEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         5 ~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ....+|.+...+  .. ....+..++|.|.+.| +|.+ .++|.+ +|+.+.
T Consensus        85 ~~~~~P~V~v~~--~~-~~~~~~~~tL~C~a~gFyP~~i~v~W~k-ng~~~~  132 (197)
T 1uvq_A           85 ATNEVPEVTVFS--KS-PVTLGQPNTLICLVDNIFPPVVNITWLS-NGQSVT  132 (197)
T ss_dssp             CCCCCCEEEEEE--SS-CCCTTSCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             cccCCCCccccc--CC-ccccCCccEEEEEEEeEcCCCCEEEEEE-CCEEcc
Confidence            344677765431  11 1234677999999999 7775 799999 887764

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.08  E-value=3.8e-06  Score=43.02  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             cCCCeEEEEeeEeeec----CCeEEEEeCCCcEE
Q psy4606          24 PEGGTIKLVCKAKGYP----RPHITWKREDGQEI   53 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P----~P~~~W~~~~~~~~   53 (69)
                      ..|+.+.|.|.+.|.|    .+.+.|++ ++..+
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k-~~~~~   48 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEV   48 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEE-TTEEE
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEE-CCccc
Confidence            5899999999999975    24999999 66554

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.08  E-value=1.1e-05  Score=37.61  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=27.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.|.+.+.|++.
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   40 (109)
T 2q20_A           10 PSSLSASVGDRVTITCQASQDISNYLNWYQQ   40 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEecCCCcEEEEEeeccCCCCcEEEEEE
Confidence            5567788999999999999988899999984

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.08  E-value=8.7e-06  Score=41.50  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k   37 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQ   37 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEE
Confidence            556778899999999999999999999997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.08  E-value=2.1e-05  Score=39.73  Aligned_cols=27  Identities=11%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCeEEEEeeE-eeecCCeEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKA-KGYPRPHITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~   54 (69)
                      +..+.|.|.+ .| |.|.+.|++ ++..+.
T Consensus       115 ~~~v~L~C~~~~g-p~p~i~W~~-~~~~l~  142 (180)
T 2dru_A          115 CSNATLTCEVLEG-TDVELKLYQ-GKEHLR  142 (180)
T ss_dssp             GGGTEEEEECSSC-TTCEEEEEE-TTEEEE
T ss_pred             CCCEEEEEEeCCC-CCCEEEEEE-CCeECc
Confidence            4569999999 77 999999999 777765

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.07  E-value=1.9e-06  Score=45.98  Aligned_cols=30  Identities=30%  Similarity=0.698  Sum_probs=24.5

Q ss_pred             cCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGY-PR-PHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~   54 (69)
                      ..|..+.|.|.+.|. |. |.+.|++ +++.+.
T Consensus       163 ~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~  194 (279)
T 2wbj_D          163 SHTQKATLVCLATGFYPDHVELSWWV-NGKEVH  194 (279)
T ss_dssp             HHHSCCEEEEEEEEEBSSCEEEEEEE-TTEECC
T ss_pred             cCCCceEEEEEEeeEcCCCcEEEEEE-CCEECC
Confidence            468899999999996 54 7999999 776654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.07  E-value=1.3e-05  Score=40.65  Aligned_cols=32  Identities=31%  Similarity=0.595  Sum_probs=24.9

Q ss_pred             EEecCCCeEEEEeeEeeecCCe---EEEEeCCCcE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPH---ITWKREDGQE   52 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~---~~W~~~~~~~   52 (69)
                      +.+..|+.+.|.|.+.|.|.+.   +.|+|.++..
T Consensus        11 V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~   45 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTV   45 (225)
T ss_dssp             EEEETTSCEEECCEECSSCCCEEEEEEEECTTSCE
T ss_pred             EEEecCCCEEEEEEEECCCCCceeEEEEEECCCcc
Confidence            4456899999999999987764   7899954443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.06  E-value=4.9e-06  Score=43.57  Aligned_cols=28  Identities=14%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             ecCCCeEEEEeeEeee-cC-CeEEEEeCCCc
Q psy4606          23 APEGGTIKLVCKAKGY-PR-PHITWKREDGQ   51 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~   51 (69)
                      +..|+.+.|.|.+.|. |. |.+.|++ ++.
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~~v~W~~-~~~  173 (242)
T 1hxm_B          144 TKLQKAGTYLCLLEKFFPDVIKIHWEE-KKS  173 (242)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEE-SSS
T ss_pred             cccCCCceEEEEEeeEECCCeEEEEEc-CCC
Confidence            4568999999999995 75 7999999 554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.06  E-value=1.4e-05  Score=41.44  Aligned_cols=45  Identities=22%  Similarity=0.494  Sum_probs=32.7

Q ss_pred             eeEEEEcCC-----E-EeecCCCceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606           2 GYLDVVVPP-----D-ILNEESSSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus         2 ~~l~V~~~p-----~-~~~~~~~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +.|.|..++     . +...  +....+.+|+.+.|.|.+.|.|  .+.+.|++.
T Consensus       106 ~~l~V~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A          106 TKLEIKGGGSGGGGEVQLQQ--SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEEEECCCSCCCCCCCEEEE--CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEecCCCCCCceEEEeC--CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            357776542     2 3333  4456788999999999999977  469999983

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.06  E-value=1.3e-05  Score=42.81  Aligned_cols=30  Identities=17%  Similarity=0.427  Sum_probs=26.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +....+.+|+.++|.|.+.|.| |.+.|+|.
T Consensus       169 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~  198 (282)
T 1qok_A          169 PAIMSASPGEKVTITCSASSSV-SYMHWFQQ  198 (282)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC-SCCEEEEE
T ss_pred             CCEEEEcCCCcEEEEEEecCCC-ceEEEEEE
Confidence            5567788999999999999999 99999983

>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=98.05  E-value=8.9e-06  Score=44.79  Aligned_cols=41  Identities=34%  Similarity=0.635  Sum_probs=29.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      ++|.+...  ..  ....+..++|.|.|.| +|.+ .++|.+ +|+.+
T Consensus       184 ~~P~v~v~--~~--~~~~~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~  226 (315)
T 1cd1_A          184 EKPVAWLS--SV--PSSAHGHRQLVCHVSGFYPKPVWVMWMR-GDQEQ  226 (315)
T ss_dssp             BCCEEEEE--EE--ECSSSSCEEEEEEEEEEBSSCEEEEEEE-TTEEC
T ss_pred             CCCcceEE--eC--CCCCCCceEEEEEEeeeeCCCcEEEEEE-ccccC
Confidence            56766543  11  1234567999999999 8988 799999 78775

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.05  E-value=5.2e-06  Score=42.08  Aligned_cols=41  Identities=10%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .+|.+...  +. ..+.+|+.+.|.|.+.|.|. .+.|+| ++..+
T Consensus         4 ~~P~i~~~--p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~   44 (196)
T 2d3v_A            4 SKATLWAE--PG-SVISRGNSVTIRCQGTLEAQ-EYRLVK-EGSPE   44 (196)
T ss_dssp             CBCEEEEE--SC-SEEETTCCEEEEEECCTTCC-EEEEEE-TTCSS
T ss_pred             CCCEEEeC--CC-CcccCCCeEEEEEeCCCCCc-EEEEEE-CCCCC
Confidence            46777766  43 36779999999999998765 999999 66544

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.05  E-value=5.8e-06  Score=43.16  Aligned_cols=44  Identities=18%  Similarity=0.186  Sum_probs=30.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-C-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-P-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P-~~~W~~~~~~~~   53 (69)
                      .+|.+.... +....+..|+.+.|.|.+.|. |. | .+.|++ +|+.+
T Consensus        11 ~~P~v~~~~-p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~-~g~~~   57 (231)
T 2w59_A           11 SPIQLYAIP-PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTR-EKSGN   57 (231)
T ss_dssp             -CCEEEEEC-CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEEC-SSSSC
T ss_pred             CCCEEEEeC-cChhhcccCCceEEEEEEeCccCCCCeEEEEEc-CCeec
Confidence            355554221 444456789999999999994 75 6 999998 66655

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.05  E-value=2.7e-05  Score=39.07  Aligned_cols=27  Identities=7%  Similarity=0.101  Sum_probs=23.0

Q ss_pred             EEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          30 KLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        30 ~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .|.|.+.|.|.|.+.|++ ++..+....
T Consensus       109 ~L~C~~~~~p~p~i~W~~-~~~~l~~~~  135 (171)
T 1ccz_A          109 TLTCEVLEGTDVELKLYQ-GKEHLRSLR  135 (171)
T ss_dssp             EEEEECSSCSSCEEEEEE-TTEEEEEES
T ss_pred             EEEEEeCCCCCcEEEEEE-CCEECcCCc
Confidence            799999999999999999 787776443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.05  E-value=1.3e-05  Score=42.25  Aligned_cols=46  Identities=26%  Similarity=0.606  Sum_probs=30.0

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~   51 (69)
                      .|.|.    .+|.+...  ........|+.+.|.|.+.| .|.| .+.|++ ++.
T Consensus       114 ~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~~~  165 (253)
T 3liz_H          114 LVTVSAAKTTPPSVYPL--APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSL  165 (253)
T ss_dssp             EEEECSSCCBCCEEEEE--CC------CCEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             EEEEeccCCCCCeEEEe--cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe-CCe
Confidence            56665    45666533  22234557999999999999 8888 899998 554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.05  E-value=3.2e-06  Score=42.71  Aligned_cols=38  Identities=24%  Similarity=0.660  Sum_probs=30.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+...  +....+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         4 ~~~i~~~--~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~   41 (209)
T 1nbq_A            4 SVTVHSS--EPEVRIPENNPVKLSCAYSGFSSPRVEWKFD   41 (209)
T ss_dssp             CCEEECS--CSBCCEETTCCCEEECEEESCSSEEEEEEEE
T ss_pred             eEEEEcC--CCceEEEcCCCEEEEEEEeCCCCcEEEEEEc
Confidence            3444443  5566778999999999999999999999994

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.04  E-value=5.4e-06  Score=47.03  Aligned_cols=42  Identities=24%  Similarity=0.553  Sum_probs=33.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  +....+.+|+.++|.|.+.  |.|.+.|+++++..+.
T Consensus       352 ~P~i~~~--~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~  393 (452)
T 3zyi_A          352 APFIMDA--PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLS  393 (452)
T ss_dssp             CCCCSBC--CCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEEC
T ss_pred             Ccccccc--cccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEec
Confidence            4555544  5667889999999999998  9999999996665554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.04  E-value=9.2e-06  Score=41.37  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      ..+|.+...  +. ..+.+|+.++|.|.+.+ |.+.+.|+| +|..
T Consensus         6 ~~~P~i~~~--p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~   46 (201)
T 1nkr_A            6 HRKPSLLAH--PG-PLVKSEETVILQCWSDV-MFEHFLLHR-EGMF   46 (201)
T ss_dssp             -CCCEEEEE--SC-SEEETTCCEEEEEEESS-CCSEEEEEE-ESSS
T ss_pred             CCCCeEEEE--cC-CccCCCCcEEEEEeccC-CCCEEEEEE-CCCc
Confidence            356777665  43 56779999999999975 788999999 5654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.04  E-value=1.2e-05  Score=41.89  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=23.4

Q ss_pred             CCeEEEEeeEeee-c-CCeEEEEeCCCcEEEe
Q psy4606          26 GGTIKLVCKAKGY-P-RPHITWKREDGQEIII   55 (69)
Q Consensus        26 g~~~~l~C~~~g~-P-~P~~~W~~~~~~~~~~   55 (69)
                      ++.+.|.|.+.|. | .+.+.|++ +|+.+..
T Consensus       133 ~~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  163 (231)
T 2w59_A          133 LSRVTLSCLVRGFRPRDIEIRWLR-DHRAVPA  163 (231)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECCG
T ss_pred             cCceEEEEEEEeccCCCcEEEEEE-CCEECCC
Confidence            5679999999995 5 37999999 7877643

>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...

Probab=98.03  E-value=6.2e-06  Score=42.26  Aligned_cols=44  Identities=32%  Similarity=0.561  Sum_probs=28.5

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++|.+...  +... ...+..++|.|.+.| +|.+ .++|.+ +|+.+.
T Consensus        94 ~~~P~v~v~--~~~~-~~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  139 (190)
T 3c5j_B           94 RVHPQVTVY--PAKT-QPLQHHNLLVCSVSGFYPGSIEVRWFR-NGQEEK  139 (190)
T ss_dssp             CBCCEEEEE--EEC------CCCEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             ccCceEEEE--eCCc-cccCCceEEEEEEeeEECCceEEEEEE-CCeEcC
Confidence            356766543  2111 124677899999999 6776 899999 787763

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.02  E-value=1.4e-05  Score=38.09  Aligned_cols=31  Identities=29%  Similarity=0.609  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++.
T Consensus        10 p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~   40 (119)
T 2e27_L           10 PSSLSASLGGKVTITCKANQDIKKKIAWYQH   40 (119)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEEeCCCCCceEEEEEE
Confidence            4556788999999999999988899999984

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.02  E-value=1.3e-06  Score=45.55  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=24.2

Q ss_pred             ecCCCeEEEEeeEeee-cC-CeEEEEeCCCcEE
Q psy4606          23 APEGGTIKLVCKAKGY-PR-PHITWKREDGQEI   53 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~   53 (69)
                      +..|+.+.|.|.+.|. |. +.+.|++.+|+.+
T Consensus       142 v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l  174 (230)
T 1ypz_F          142 TNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTI  174 (230)
T ss_dssp             HHHHSCEEEEEEEEEESSCCCEEEEECTTSSCB
T ss_pred             hccCCcceEEEEEeeecCCCeEEEEEccCCeEc
Confidence            3457889999999995 86 5999998555544

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.02  E-value=1.7e-05  Score=42.05  Aligned_cols=49  Identities=16%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             eeEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEE
Q psy4606           2 GYLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEI   53 (69)
Q Consensus         2 ~~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~   53 (69)
                      ..|.|..    +|.+...  +....+..|+.+.|.|.+.|.|. +.+.|++ ++..+
T Consensus       175 ~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~-~~~~~  228 (292)
T 4dkd_C          175 IRLKVQKVIPGPPALTLV--PAELVRIRGEAAQIVCSASSVDVNFDVFLQH-NNTKL  228 (292)
T ss_dssp             EEEEEECCCCSSCEEEEE--SSCBCCCSSSCEEEEEEEEESSSCCEEECCB-SSCCC
T ss_pred             EEEEEeCCCCCCCeEEcc--CCceeEecCCCEEEEEEecCCCCceEEEEeC-CCccc
Confidence            4577776    8888766  44555678999999999999665 5688888 55433

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.01  E-value=8e-06  Score=46.42  Aligned_cols=47  Identities=19%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEEe
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQEIII   55 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~~   55 (69)
                      ..+|.+...+ +....+..|..+.|.|.+.|. |. +.+.|++ +|+.+..
T Consensus       347 ~~~P~v~~~~-~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  395 (475)
T 1iga_A          347 TFRPEVHLLP-PPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPR  395 (475)
T ss_pred             CCCCeEEEEC-CChHHhccCCceEEEEEEeeeECCCCEEEEEE-CCEECCC
Confidence            4677765442 222234578889999999995 53 5999999 7877643

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.01  E-value=1.2e-05  Score=42.27  Aligned_cols=37  Identities=11%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCC----eEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP----HITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P----~~~W~~   47 (69)
                      +|.+...  +....+.+|+.+.|.|.+.|.|.|    .+.|++
T Consensus       133 ~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r  173 (253)
T 3uzq_A          133 ELVMTQT--PASLAVSLGQRATISCRASENVDRYGNSFMHWYQ  173 (253)
T ss_dssp             -CCEEEE--CSEEEECTTSCEEEEEEESSCCEETTEECEEEEE
T ss_pred             cceEECc--CCeEEEeCCCCEEEEEEecCccccCCCcEEEEEE
Confidence            4555555  566788999999999999998887    999998

>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...

Probab=98.01  E-value=7.2e-06  Score=42.33  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=26.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++|.+...  +... ...+..++|.|.|.| +|.+ .++|.+ +|+.+.
T Consensus        93 ~~P~V~v~--~~~~-~~~~~~~~L~C~v~gFyP~~i~v~W~~-~g~~~~  137 (198)
T 1uvq_B           93 VEPTVTIS--PSRT-EALNHHNLLVCSVTDFYPGQIKVRWFR-NDQEET  137 (198)
T ss_dssp             BCCEEEEE--EC---------CEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             ccceEEEE--ecCc-ccCCCCcEEEEEEeeEeCCceEEEEEE-CCEecc
Confidence            56766543  1111 124677899999999 6776 899999 787753

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.00  E-value=3.1e-05  Score=36.30  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=26.4

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.  |.+.+.|++.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (111)
T 2ywz_A            7 PRTITKETGESLTIKCVLKDHSCGLSSTTWYRT   39 (111)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             CCcEEEccCCCEEEEeEECCCCCCCCEEEEEEe
Confidence            556778899999999999885  6789999983

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.00  E-value=2e-06  Score=50.96  Aligned_cols=52  Identities=25%  Similarity=0.454  Sum_probs=7.1

Q ss_pred             eeEEEEcCCEEeecC-CCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEE-SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|.|..+|.+...+ ......+.+|+.+.|.|.+.|.|.|.+.|++ +|..+.
T Consensus       320 ~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~g~~l~  372 (772)
T 3v2a_R          320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLE  372 (772)
T ss_dssp             EEEEEECCCC--------------------------------------------
T ss_pred             EEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEE-CCEeCC
Confidence            357777888654331 1234567889999999999999999999999 776654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.00  E-value=3.1e-06  Score=45.90  Aligned_cols=47  Identities=23%  Similarity=0.446  Sum_probs=36.2

Q ss_pred             eEEEEc-----CCEEeecCCCceEEecCCCeEEEEeeE---eeec-CCeEEEEeCCCcE
Q psy4606           3 YLDVVV-----PPDILNEESSSDIMAPEGGTIKLVCKA---KGYP-RPHITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~-----~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g~P-~P~~~W~~~~~~~   52 (69)
                      .|.|..     +|.+...  +....+..|+.+.|.|.+   .|.| .|.+.|++ ++..
T Consensus       215 ~l~V~~~~~~~~P~i~~~--~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~-~g~~  270 (339)
T 3o4o_C          215 ELRIKKKKEETIPVIISP--LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA-NDTH  270 (339)
T ss_dssp             EEEEECCCCCCCCEECCC--SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEES-SSSC
T ss_pred             EEEEEcCCCCCCCEEecC--CceeEeccCCCEEEEEEEECCCCCCCCceEEEEE-CCee
Confidence            466653     5566554  555677889999999999   8999 89999998 6654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.99  E-value=1.5e-05  Score=42.42  Aligned_cols=47  Identities=26%  Similarity=0.548  Sum_probs=31.2

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~   52 (69)
                      .|.|..    +|.+...+ +. ..+..|+.+.|.|.+.| .|.| .+.|++ ++..
T Consensus       119 ~L~V~~~~~~~P~v~~~~-p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k-~g~~  171 (261)
T 2xqy_G          119 TLTVSSAKTTAPSVYPLA-PV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLS  171 (261)
T ss_dssp             EEEECSSCCBCCEEEEEC-CC-CC--CCSEEEEEEEEEEEBSSCCEEEEGG-GTCC
T ss_pred             EEEEccCCCCCCeEEEeC-CC-ccccCCCcEEEEEEEEeEeCCCCEEEEec-CCCc
Confidence            566764    45554331 22 22457999999999999 5888 999998 5544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.99  E-value=1.3e-05  Score=40.81  Aligned_cols=31  Identities=16%  Similarity=0.491  Sum_probs=27.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   38 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEe
Confidence            4566788999999999999999999999973

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.98  E-value=3.6e-05  Score=40.50  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      |.+...  +....+.+|+.+.|.|.+.+ .|.+.+.|++.
T Consensus       137 ~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A          137 QKVTQA--QSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             CEEECC--CCCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred             eeeEEe--CCEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence            455554  56678889999999999988 48999999983

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.97  E-value=1.1e-05  Score=40.55  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  + ...+.+|+.+.|.|.+.+.| +.+.|+| ++..+
T Consensus        85 ~l~V~~~~~~p~i~~~--p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k-~g~~~  133 (184)
T 2gi7_A           85 ELVATGVFAKPSLSAQ--P-GPAVSSGGDVTLQCQTRYGF-DQFALYK-EGDPA  133 (184)
T ss_dssp             EEEEESSSCCCEEEEE--C-CCSSCCTTCEEEEEECSSCC-CEEEEEE-CCCCT
T ss_pred             EEEecCcCCCCEEEeC--C-CceecCCCcEEEEEEcCCCC-cEEEEEE-CCCcC
Confidence            455642   5566554  3 33566899999999987755 7999999 66543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.97  E-value=1.3e-05  Score=41.20  Aligned_cols=28  Identities=32%  Similarity=0.679  Sum_probs=24.6

Q ss_pred             CCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          25 EGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|+.+.|.|.  |.|.|.+.|++ ++..+..
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~  154 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQH-NDKNIGG  154 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEE-TTEEESC
T ss_pred             cCCcEEEEcC--CCCCCceEEEE-CCEECCC
Confidence            8999999999  89999999999 7777643

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=97.96  E-value=1.5e-05  Score=37.12  Aligned_cols=31  Identities=19%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   38 (108)
T 1qfw_M            8 PKSMSMSVGERVTLSCKASETVDSFVSWYQQ   38 (108)
T ss_dssp             CSCEECCTTCCEEEEEEESSCCCSCEEEEEE
T ss_pred             CCeEEEcCCCCEEEEeeeCCCCCcEEEEEEE
Confidence            4556788999999999999988889999983

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.96  E-value=1.6e-05  Score=36.94  Aligned_cols=31  Identities=10%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~   38 (107)
T 1i8k_A            8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQ   38 (107)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEecCCCCEEEEEEECCCCCCcEEEEEE
Confidence            4557788999999999999988899999984

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.96  E-value=1.2e-05  Score=40.75  Aligned_cols=41  Identities=15%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .+|.+...  +. ..+.+|+.+.|.|.+.|.|. .+.|+| ++..+
T Consensus         4 ~~P~i~~~--p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~   44 (198)
T 1ugn_A            4 PKPTLWAE--PG-SVITQGSPVTLRCQGGQETQ-EYRLYR-EKKTA   44 (198)
T ss_dssp             CCCEEEEE--SC-SEEETTCCEEEEEECCTTCC-CEEEEE-SSSCC
T ss_pred             CCCeEecc--CC-CcccCCCcEEEEEEecCCCc-EEEEEE-CCccc
Confidence            46777765  43 36789999999999999775 699999 66554

>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*

Probab=97.96  E-value=4.1e-06  Score=43.47  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ...+|.+...+..   ....+..++|.|.+.| +|.+ .++|.+ +|+.+.
T Consensus        87 r~~~P~V~v~~~~---~~~~~~~~tL~C~a~gFyP~~i~v~W~k-ng~~~~  133 (199)
T 1iak_A           87 TNEAPQATVFPKS---PVLLGQPNTLICFVDNIFPPVINITWLR-NSKSVT  133 (199)
T ss_dssp             CCCCCEEEEEESS---CCCTTSCEEEEEEEEEECSSCCEEEEEE-TTEECC
T ss_pred             cccCCCcccccCC---ccccCCCcEEEEEEeeEeCCCcEEEEEE-CCEEcc
Confidence            3466766543111   1234667999999999 7775 799999 787763

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.96  E-value=1.9e-05  Score=37.58  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.|.+.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   38 (120)
T 1mqk_L            8 PVSLSASVGETVTITCRASENIYSYLAWYQQ   38 (120)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEE
Confidence            5567788999999999999988899999984

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.96  E-value=1.7e-05  Score=42.67  Aligned_cols=31  Identities=16%  Similarity=0.428  Sum_probs=26.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCC------eEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRP------HITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P------~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.|.|.|      .+.|++.
T Consensus       166 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          166 PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEE
Confidence            556778899999999999998776      8999984

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.95  E-value=1.5e-05  Score=41.66  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.|.|  .|.+.|++.
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            4578999999999999975  589999984

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.95  E-value=5.6e-06  Score=43.64  Aligned_cols=31  Identities=16%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             EecCCCeEEEEeeEee-ecCC--eEEEEeCCCcEE
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRP--HITWKREDGQEI   53 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~   53 (69)
                      .+.+|+.+.|.|.+.| .|.|  .+.|++ ++..+
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k-~~~~l   47 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLAL-GDQRL   47 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEE-TTEEC
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEe-CCEEC
Confidence            5678999999999999 8888  999999 66654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.95  E-value=2.1e-05  Score=41.08  Aligned_cols=31  Identities=23%  Similarity=0.513  Sum_probs=27.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~   41 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQ   41 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEeeCCCcEEEEEEecccCCceEEEEEE
Confidence            5567788999999999999999999999983

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.94  E-value=2e-05  Score=38.40  Aligned_cols=30  Identities=30%  Similarity=0.598  Sum_probs=27.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        45 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~   74 (145)
T 1z9m_A           45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSN   74 (145)
T ss_dssp             CCCEEEETTSCEEEEEECSCCTTCCEEEEC
T ss_pred             CceEEEEcCCCEEEEEEEcCCCCcEEEEEC
Confidence            566788999999999999999999999995

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.94  E-value=5e-05  Score=38.38  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  +. ..+.+|+.++|.|.+.+. .+.+.|+| ++..+
T Consensus        91 ~l~V~~~~~~p~~~~~--~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k-~g~~~  139 (196)
T 3p2t_A           91 ELVMTGAYSKPTLSAL--PS-PLVTSGKSVTLLCQSRSP-MDTFLLCK-ERAAH  139 (196)
T ss_dssp             EEEEECSSCCCEEEEE--SC-SEECTTCCEEEEEEEEEE-EEEEEEEE-TTCCC
T ss_pred             EEEecCCCCCCEEEeC--Cc-ceecCCCeEEEEEecCCC-CCEEEEEe-CCCcc
Confidence            455652   4555544  32 256789999999999984 46899999 66543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.93  E-value=4.1e-05  Score=40.32  Aligned_cols=36  Identities=14%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +|.+...  +....+.+|+.++|.|.+.+. .|.+.|++
T Consensus       137 ~~~v~~~--p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k  172 (256)
T 3tf7_C          137 EAAVTQS--PRNKVTVTGENVTLSCRQTNS-HNYMYWYR  172 (256)
T ss_dssp             -CCEEES--CSEEEEETTCCEEECEEECSC-CSEEEEEE
T ss_pred             ccEEEec--CCEEEEeCCCcEEEEEEcCCC-ceEEEEEE
Confidence            4556555  666778899999999999987 78999998

>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_A 1k8i_A*

Probab=97.93  E-value=4.9e-05  Score=39.68  Aligned_cols=43  Identities=14%  Similarity=0.190  Sum_probs=28.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCC
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDI   68 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l   68 (69)
                      .+..++|.|.+.| +|.. .++|.+ +|+.+..........+.+++
T Consensus       113 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~dgt  157 (211)
T 2bc4_A          113 FGKPNTLVCFVSNLFPPMLTVNWQH-HSVPVEGFGPTFVSAVDGLS  157 (211)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEE-TTEEECCSSCCEEEEETTTE
T ss_pred             cCCcceEEEEEeeEeCCCCEEEEEE-CCEEcCCeeecceEECCCCc
Confidence            4667999999999 8875 689999 88876221222344444444

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.93  E-value=1.9e-05  Score=41.30  Aligned_cols=38  Identities=11%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeec-----CCeEEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYP-----RPHITWKR   47 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~   47 (69)
                      .++.+...  +..+.+.+|+.+.|.|.+.|.|     .|.+.|++
T Consensus        37 ~~~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k   79 (254)
T 2c1o_A           37 RELVMTQS--PLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLL   79 (254)
T ss_dssp             -CCCEEEE--CSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEE
T ss_pred             eceeEEeC--CceEEecCCCcEEEEeeccCcccccCCCCceEEEE
Confidence            45666655  6678899999999999999987     49999997

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=97.93  E-value=1.3e-05  Score=43.16  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CceEEecCCCeEEEEeeEee-------ecCCeEEEEeCCCcEEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-------YPRPHITWKREDGQEII   54 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-------~P~P~~~W~~~~~~~~~   54 (69)
                      +.+..+..|+.+.|.|.+.|       .|.|.+.|++ +|+.+.
T Consensus        11 P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~-~g~~i~   53 (303)
T 1i1r_A           11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTIP   53 (303)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEE-TTEECC
T ss_pred             cCCceEeCCCCEEEEEEECCccccccCCChhheEEEE-CCEECC
Confidence            55567889999999999996       4889999999 787764

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.92  E-value=2.1e-05  Score=41.09  Aligned_cols=31  Identities=13%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   38 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQ   38 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEe
Confidence            5567788999999999999999999999983

>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B*

Probab=97.92  E-value=2.8e-05  Score=40.45  Aligned_cols=44  Identities=25%  Similarity=0.597  Sum_probs=30.5

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++|.+...  +.. ....+..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus        94 ~~~P~V~v~--~~~-~~~~~~~~~L~C~v~gFyP~~i~v~W~~-~g~~~~  139 (211)
T 2bc4_B           94 TRPPSVQVA--KTT-PFNTREPVMLACYVWGFYPAEVTITWRK-NGKLVM  139 (211)
T ss_dssp             CBCCEEEEE--ECC-CCSCSSSEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCCeeEEE--eCC-cccCCCceEEEEEEeeeECCCcEEEEEE-CCEECC
Confidence            367766543  111 1235677999999999 6765 799999 888774

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.92  E-value=1e-05  Score=42.63  Aligned_cols=37  Identities=11%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +|.+...  +..+.+.+|+.++|.|.+.+.|.|.+.|++
T Consensus         2 s~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   38 (259)
T 3omz_A            2 SSNLEGR--TKSVIRQTGSSAEITCDLAEGSTGYIHWYL   38 (259)
T ss_dssp             -----------CEEEETTCCEEEECCC-----CEEEEEE
T ss_pred             ccccccC--CceeEecCCCcEEEEEEEccCCCcEEEEEE
Confidence            3455444  566788899999999999999999999998

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=97.92  E-value=1.5e-05  Score=46.55  Aligned_cols=44  Identities=16%  Similarity=0.386  Sum_probs=29.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      ++|.+...+ + ......+..+.|.|.+.| +|. -.++|++ +|+.+.
T Consensus       448 ~~P~V~~~~-~-~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k-~g~~~~  493 (551)
T 1ntl_A          448 KAPQLYTIP-P-PKEQMAKDKVSLTCMITDFFPEDITVEWQW-NGQPAE  493 (551)
T ss_pred             cCCceEEeC-C-ChhhccCCceEEEEEEEEeECCCCEEEEEE-CCEEcc
Confidence            566654431 1 112345889999999999 665 4799999 777654

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=97.91  E-value=1.8e-05  Score=41.14  Aligned_cols=50  Identities=28%  Similarity=0.451  Sum_probs=35.1

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCe--EEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPH--ITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~--~~W~~~~~~~~~   54 (69)
                      .|.|+.+|...... ........|+.++|.|.+.| .|...  ++|++ +++.+.
T Consensus        82 ~l~Vy~~P~~v~i~-~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlk-g~~~l~  134 (196)
T 3bn3_B           82 LIRTFQRPDRVELM-PLPPWQPVGENFTLSCRVPGAGPRASLTLTLLR-GAQELI  134 (196)
T ss_dssp             EEEEEBCCCCCEEC-CCCSSEETTSEEEEEEEETTCBCGGGEEEEEEE-TTEEEE
T ss_pred             EEEEecCCCcCEEc-cCCccccCCCcEEEEEEeCCccCCCCcEEEEEe-CCEEee
Confidence            56777777544321 22223678999999999998 77765  79999 777664

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.91  E-value=7.6e-06  Score=44.35  Aligned_cols=27  Identities=48%  Similarity=0.888  Sum_probs=22.4

Q ss_pred             CeEEEEeeEeee-c-CCeEEEEeCCCcEEE
Q psy4606          27 GTIKLVCKAKGY-P-RPHITWKREDGQEII   54 (69)
Q Consensus        27 ~~~~l~C~~~g~-P-~P~~~W~~~~~~~~~   54 (69)
                      +.+.|.|.+.|. | .+.++|++ +|..+.
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~   53 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLE-DGQVMD   53 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEE-TTEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEE-CCEEcc
Confidence            599999999995 5 47999999 777654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.91  E-value=1.8e-05  Score=40.33  Aligned_cols=31  Identities=16%  Similarity=0.477  Sum_probs=27.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   37 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEE
Confidence            4556788999999999999999999999983

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.90  E-value=4.2e-05  Score=38.18  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      .+.+.+|+.+.|.|.+.+.|.|.+.|++ ++.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~-~~~   34 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKN-SNQ   34 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEE-TTC
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEe-CCc
Confidence            4567899999999999999999999999 443

>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D, alpha-galactosylceramide, protein complex, cell membrane, disulfide bond, endosome; HET: NDG BMA NAG AGH; 2.50A {Homo sapiens} PDB: 3vwj_A* 3vwk_A* 4en3_C* 2po6_A* 3u0p_A* 3sdx_A* 1zt4_A* 3tzv_C*

Probab=97.90  E-value=3.5e-05  Score=41.95  Aligned_cols=28  Identities=43%  Similarity=0.942  Sum_probs=23.4

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..+.|.|.|.| +|.+ .++|.+ +|+.+.
T Consensus       200 ~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~  229 (284)
T 3huj_A          200 PGRLLLVCHVSGFYPKPVWVKWMR-GEQEQQ  229 (284)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             CCceEEEEEECcEEccEEEEEEEE-CCEecc
Confidence            568999999999 8886 789999 787653

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=97.90  E-value=6.3e-06  Score=43.65  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             cCCEEeecCCCceEE-ecCCCeEEEEeeEeee---cCC-eEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIM-APEGGTIKLVCKAKGY---PRP-HITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~g~---P~P-~~~W~~~~~~~~   53 (69)
                      .+|.+...+ +.... +..|..+.|.|.+.|.   |.+ .++|++ +|+.+
T Consensus        21 ~~P~v~i~~-ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k-~g~~l   69 (240)
T 4acp_A           21 GGPSVFLFP-PKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEV   69 (240)
T ss_dssp             --CEEEEEC-CCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEE-TTEEE
T ss_pred             CCCEEEEEC-cChHHhcccCCCcEEEEEEeccccCCCccEEEEEE-CCccc
Confidence            355554432 33333 4469999999999995   433 799999 77765

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.90  E-value=1.9e-05  Score=42.60  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      ..+..+|.+...  +. ..+.+|+.+.|.|.+.|. .+.+.|+| ++..
T Consensus        19 ~~~~~~P~i~~~--p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k-~g~~   62 (316)
T 3vh8_G           19 MGGQDKPFLSAW--PS-AVVPRGGHVTLRCHYRHR-FNNFMLYK-EDRI   62 (316)
T ss_dssp             -----CCEEEEE--SC-SEEETTSCEEEEEEBTTB-CCSEEEEE-SSCS
T ss_pred             cCCCCCCEeecc--CC-CccCCCCCEEEEEEccCC-CceEEEEe-CCCc
Confidence            345567888776  43 456799999999999988 78999999 5544

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.90  E-value=4e-05  Score=41.52  Aligned_cols=29  Identities=14%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .|+.+.|.|.+.| .|.+ .+.|++ +|+.+.
T Consensus       233 ~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~l~  263 (323)
T 2wqr_A          233 SRDKRTLACLIQNFMPEDISVQWLH-NEVQLP  263 (323)
T ss_dssp             CTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCcEEEEEEeeeeeCCCcEEEEEE-CCEECC
Confidence            3999999999999 5544 799999 787664

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.89  E-value=1.2e-05  Score=44.07  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=28.4

Q ss_pred             ceEEecCCCeEEEEeeEee-----ecCCeEEEEeCCCcEEE
Q psy4606          19 SDIMAPEGGTIKLVCKAKG-----YPRPHITWKREDGQEII   54 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g-----~P~P~~~W~~~~~~~~~   54 (69)
                      ....+.+|+.+.|.|.+.|     .|.|.+.|++ +|..+.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~-~g~~~~  223 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA-ERASSS  223 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEE-SSCCCC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEec-CCCCcc
Confidence            3456778999999998887     8999999999 665543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.89  E-value=6.3e-06  Score=44.54  Aligned_cols=34  Identities=32%  Similarity=0.791  Sum_probs=29.2

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~~~~~~  165 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFR  165 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCB-TTBCCC
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEE-CCEECc
Confidence            3567789999999999999999999999 676654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.89  E-value=9.8e-06  Score=42.68  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             ecCCCeEEEEeeEeee---cCC-eEEEEeCCCcEE
Q psy4606          23 APEGGTIKLVCKAKGY---PRP-HITWKREDGQEI   53 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~---P~P-~~~W~~~~~~~~   53 (69)
                      +.+|+.+.|.|.+.|.   |.| .+.|++ ++..+
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k-~~~~~   62 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFI-DDVEV   62 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEE-SSCEE
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEE-CCccc
Confidence            5689999999999997   888 899999 44443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.89  E-value=3.4e-05  Score=42.34  Aligned_cols=31  Identities=10%  Similarity=0.146  Sum_probs=26.2

Q ss_pred             EecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          22 MAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~  137 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRS-PRGKN  137 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEEC-SSSCE
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEc-CCCcc
Confidence            45789999999999999999999999 44433

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.89  E-value=5.4e-05  Score=38.14  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...  +.. .+.+|+.++|.|.+.+ +.+.+.|+| ++..+.
T Consensus         4 ~P~i~~~--p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~~   44 (188)
T 1oll_A            4 KPFIWAE--PHF-MVPKEKQVTICCQGNY-GAVEYQLHF-EGSLFA   44 (188)
T ss_dssp             CCEEEEE--SCS-EEETTCCEEEEEECCT-TCCEEEEEE-TTEEEE
T ss_pred             CCEEEee--cCC-cCCCCCCEEEEEecCC-CCCEEEEEE-CCCccc
Confidence            5677665  433 6788999999999976 457899999 676553

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.88  E-value=1.7e-05  Score=40.41  Aligned_cols=28  Identities=11%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k   36 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQ   36 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEE
Confidence            6778899999999999999999999998

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.88  E-value=4.8e-05  Score=39.89  Aligned_cols=29  Identities=28%  Similarity=0.749  Sum_probs=24.8

Q ss_pred             eEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ...+.+|+.+.|.|.+.|.|  .+.+.|++.
T Consensus       143 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CeEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            34588999999999999876  799999983

>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}

Probab=97.88  E-value=1.1e-05  Score=41.30  Aligned_cols=47  Identities=19%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             EEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      |..+.+|.+...+  .. ....|...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        81 l~~~~~P~V~v~~--~~-~~~~~~~~~L~C~v~gFyP~~i~v~W~~-ng~~~~  129 (181)
T 3lqz_A           81 QATNDPPEVTVFP--KE-PVELGQPNTLICHIDKFFPPVLNVTWLC-NGELVT  129 (181)
T ss_dssp             CCCCBCCEEEEEE--SS-CCCTTCCEEEEEEEEEEBSCCCEEEEEE-TTEECC
T ss_pred             ccccCCCeEEEEc--CC-ccccCCCeEEEEEEeeeECCCCEEEEEE-CCEECc
Confidence            3445677765431  11 1124667999999999 6765 789999 787664

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.87  E-value=2.9e-05  Score=39.61  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             eEEecCCCeEEEEeeEeee-cCCeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGY-PRPHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~-P~P~~~W~~   47 (69)
                      .+.+.+|+.+.|.|.+.|. |.|.+.|++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k   37 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQ   37 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEE
Confidence            6778899999999999998 999999998

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.87  E-value=3.5e-05  Score=36.05  Aligned_cols=31  Identities=16%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++.
T Consensus        11 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~   41 (111)
T 1i3g_L           11 HKFMSTSVGDRVSITCKASQDVGTAVAWYQQ   41 (111)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCCEEEEEE
Confidence            5557788999999999999888889999984

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.86  E-value=3.5e-05  Score=41.06  Aligned_cols=31  Identities=32%  Similarity=0.725  Sum_probs=26.3

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+.|.|  .|.+.|++.
T Consensus       141 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          141 SGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence            3456788999999999999966  699999984

>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*

Probab=97.86  E-value=2.6e-05  Score=42.39  Aligned_cols=28  Identities=43%  Similarity=0.988  Sum_probs=23.5

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+..++|.|.|.| +|.+ .++|.+ +|+.+
T Consensus       198 ~~~~~~L~C~a~gFyP~~I~v~W~~-~g~~~  227 (283)
T 1onq_A          198 GPGHLQLVCHVSGFYPKPVWVMWMR-GEQEQ  227 (283)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCCceeEEEEEEeEECCceEEEEEE-CCeec
Confidence            4577999999999 8876 789999 78765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.86  E-value=3.5e-05  Score=40.57  Aligned_cols=30  Identities=23%  Similarity=0.509  Sum_probs=27.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.+.+.|.|.+.|++
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   39 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSATPYLFWYV   39 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             CceEEecCCCeEEEEEEeCCCCCceEEEEE
Confidence            566788899999999999999999999997

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=97.85  E-value=6.4e-05  Score=42.87  Aligned_cols=43  Identities=28%  Similarity=0.574  Sum_probs=30.8

Q ss_pred             eEEEEcCCEEeecCCCceEE-ecCCC-eEEEEeeEee-ecC--CeEEEE-e
Q psy4606           3 YLDVVVPPDILNEESSSDIM-APEGG-TIKLVCKAKG-YPR--PHITWK-R   47 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~-~~~g~-~~~l~C~~~g-~P~--P~~~W~-~   47 (69)
                      .|.|..+|.+...  +.... ...|+ .+.|.|.+.| +|.  +.++|. +
T Consensus       285 ~L~V~~pP~V~v~--p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~r  333 (401)
T 3f8u_B          285 ELAVYKPPKVSLM--PATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELR  333 (401)
T ss_dssp             EEEEEBCCEEEEE--SSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEE
T ss_pred             EEeeccCCeEeec--cCcceeecCCCccEEEEEEecCCcCCCCcEEEEEec
Confidence            5778888887654  22222 33565 7999999999 676  799995 6

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.84  E-value=3.2e-05  Score=40.34  Aligned_cols=31  Identities=26%  Similarity=0.712  Sum_probs=26.5

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +....+.+|+.+.|.|.+.|.|  .|.+.|++.
T Consensus       138 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          138 SGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             CCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             CCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            4456788999999999999876  899999983

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=97.84  E-value=3.1e-05  Score=46.24  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEE-EEe-CCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKR-EDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~-W~~-~~~~~~~   54 (69)
                      .+|.+. .  +.+..+..|+.+.|.|.+.|.|.|.+. |++ .+|+.+.
T Consensus       164 ~~p~~~-~--~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~  209 (731)
T 2v5y_A          164 RTPHFL-R--IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP  209 (731)
T ss_dssp             SSCEEC-C--CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEE
T ss_pred             cccccc-c--ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccc
Confidence            467776 3  456788999999999999999999988 882 2676654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.84  E-value=2.8e-05  Score=43.70  Aligned_cols=46  Identities=28%  Similarity=0.599  Sum_probs=31.4

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEeee-cCC-eEEEEeCCCc
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRP-HITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P-~~~W~~~~~~   51 (69)
                      .|.|..    +|.+...+ +. ..+.+|+.+.|.|.+.|. |.| .+.|++ ++.
T Consensus       109 ~l~V~~~~~~~P~i~~~~-~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k-~~~  160 (434)
T 1igy_B          109 TVTVSSAKTTPPSVYPLA-PG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSL  160 (434)
T ss_dssp             ECEECCSCCBCCCEEEEC-CC-CCCCCTTEEEEEEEEEEEBSSCCEEEETT-TTB
T ss_pred             EEEEccCCCCCCeEEEcC-Cc-cccCCCCcEEEEEEEeeecCCCeEEEEee-CCc
Confidence            566652    45544321 21 234689999999999995 888 999998 554

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.84  E-value=3.6e-05  Score=38.93  Aligned_cols=29  Identities=10%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             ceEEecCCCeEEEEeeEeeecC-----CeEEEEe
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPR-----PHITWKR   47 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~-----P~~~W~~   47 (69)
                      ..+.+.+|+.+.|.|.+.|.|.     |.+.|++
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k   43 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQK   43 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEE
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEc
Confidence            3456778999999999999887     8999999

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.83  E-value=1.7e-06  Score=44.68  Aligned_cols=30  Identities=27%  Similarity=0.640  Sum_probs=23.9

Q ss_pred             cCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGY-PR-PHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~   54 (69)
                      ..|+.+.|.|.+.|. |. +.+.|++ +|+.+.
T Consensus       148 ~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~  179 (234)
T 2j6e_L          148 LQANKATLVCLISDFFPGAVTVAWKA-DGAPVK  179 (234)
T ss_dssp             HTTSCCCEEECCCBCSSCCCEEEEEE-TTEECC
T ss_pred             hcCCceEEEEEEEEEcCCceEEEEEE-CCEECC
Confidence            357899999999995 54 3899999 777654

>4g43_A MHC class I alpha chain 2; MHC I complex, narrow binding groove, immune system; 1.80A {Gallus gallus} PDB: 4g42_A 4e0r_A 3bev_A 3bew_A

Probab=97.83  E-value=6.6e-05  Score=40.62  Aligned_cols=44  Identities=32%  Similarity=0.754  Sum_probs=30.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCC-cEEEeCCCCCC
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEG-NTMVPKSKDIF   69 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~-~~~~~~~~~l~   69 (69)
                      .+..++|.|.|.| +|.+ .++|.+ +|+.+..+.. ..+..+.+++|
T Consensus       194 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtf  240 (275)
T 4g43_A          194 ADGILTLSCRAHGFYPRPIVVSWLK-DGAVRGQDAHSGGIVPNGDGTY  240 (275)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEE-TTEECCTTEEEEEEEECTTSCE
T ss_pred             CCCcceEEEEEeeEeCCcEEEEEEE-CCEEccCccccCCceECCCCCE
Confidence            5678999999999 8886 789999 7876542211 23444555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.82  E-value=1.3e-05  Score=44.44  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      +..+.+.+|+.+.|.|.+.| |.|.+.|+++++.
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~  285 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNE  285 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCe
Confidence            34567889999999999999 9999999995443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.82  E-value=2e-05  Score=42.22  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=29.1

Q ss_pred             EEecCCCeEEEEeeE------eeecCCeEEEEeCCCcEEEe
Q psy4606          21 IMAPEGGTIKLVCKA------KGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~------~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..+..|+.+.|.|.+      .|.|.|.+.|++ ++..+..
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k-~~~~l~~  152 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLL  152 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEE-TTEECCC
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEE-CCEECCC
Confidence            457789999999998      899999999999 7777643

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.81  E-value=3.8e-05  Score=40.88  Aligned_cols=38  Identities=16%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .+.+...  +..+.+.+|+.+.|.|.+.+.|.|.+.|++.
T Consensus        12 ~~~v~~~--p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~   49 (276)
T 3auv_A           12 DIQMTQS--PSSLSASVGDRVTITCRASQDVSTAVAWYQQ   49 (276)
T ss_dssp             CCCEEEE--CSEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             ceeEEeC--CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEE
Confidence            3445554  6677889999999999999999999999984

>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation, glycolipid, NKT cells, cell membrane, glycoprotein, immune response, immunoglobulin domain; HET: NAG FEE PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A* 2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A* 3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 4elm_A* 3ubx_A* 3ilp_A* 3ilq_C* 3rtq_A* 3rug_A* ...

Probab=97.81  E-value=2.9e-05  Score=42.33  Aligned_cols=27  Identities=44%  Similarity=0.984  Sum_probs=21.7

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      +..+.|.|.|.| +|.+ .++|.+ +|+.+
T Consensus       201 ~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~  229 (285)
T 3g08_A          201 HGHRQLVCHVSGFYPKPVWVMWMR-GDQEQ  229 (285)
T ss_dssp             --CEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCceEEEEEECcEECCceEEEEEE-CCccc
Confidence            467899999999 8876 789999 78765

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=97.81  E-value=3.9e-05  Score=41.87  Aligned_cols=50  Identities=24%  Similarity=0.461  Sum_probs=34.9

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC--eEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP--HITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~~   54 (69)
                      .|.|..+|.-.... .......+|+.++|.|.+.| .|.+  .++|+| +++.+.
T Consensus        79 ~l~V~~~P~~v~I~-~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~k-g~~~l~  131 (291)
T 1mq8_A           79 FLTVYWTPERVELA-PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELK  131 (291)
T ss_dssp             EEEECBCCSCCCBC-CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEES-SSSEEE
T ss_pred             EEEEecCCCCCEEe-cCCccccCCCCEEEEEEecCccCCCCcEEEEEE-CCEEee
Confidence            56777777544321 22234678999999999998 6765  589999 777664

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=97.80  E-value=4.6e-05  Score=40.29  Aligned_cols=28  Identities=29%  Similarity=0.685  Sum_probs=19.8

Q ss_pred             ecCCCeEEEEeeEee-ec-CCeEEEEeCCCc
Q psy4606          23 APEGGTIKLVCKAKG-YP-RPHITWKREDGQ   51 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P-~P~~~W~~~~~~   51 (69)
                      ...|+.+.|.|.+.| .| .+.+.|.+ ++.
T Consensus       153 ~~~g~~~~L~C~~~~~~P~~~~v~W~~-~g~  182 (248)
T 3u2s_H          153 STSGGTAALGCLVKDYFPEPVTVSWNS-GAL  182 (248)
T ss_dssp             ----CEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             ccCCCcEEEEEEEeeEECCCeEEEEeE-CCc
Confidence            446899999999998 66 45789998 554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.80  E-value=5e-05  Score=40.55  Aligned_cols=47  Identities=13%  Similarity=0.239  Sum_probs=33.3

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .|.|..   +|.+...  +. ..+.+|+.++|.|.+.+.| +.+.|+| +|..+.
T Consensus        98 ~L~V~~~~~~P~l~~~--p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k-~g~~~~  147 (257)
T 1b6u_A           98 DIVITGLYEKPSLSAQ--PG-PTVLAGESVTLSCSSRSSY-DMYHLSR-EGEAHE  147 (257)
T ss_dssp             EEEEECSSCCCEEECS--SC-TTCBTTCEEEEEEECSSCC-SEEEEEE-TTSSCE
T ss_pred             EEecccCCCCcceEcc--CC-CccCCCCEEEEEEeCCCCC-cEEEEEE-CCcccC
Confidence            566663   4566544  22 2467899999999998854 7999999 665543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=97.80  E-value=3.6e-05  Score=35.80  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=29.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .+|.+...  +.. .+.+|+.++|.|.+.+. .+.+.|+| +++.+
T Consensus         4 ~kP~i~~~--p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k-~g~~~   44 (105)
T 2vsd_A            4 PQPSLSLH--PSQ-GVSLGDTVTLRCHLPRM-AAWVQLWL-NGTLR   44 (105)
T ss_dssp             CCCEEEEE--SCS-SCCTTCEEEEEEECCSS-CEEEEEEE-TTEEE
T ss_pred             CCCEEEeC--CCC-CcCcCCCEEEEEEcCCC-CcEEEEEE-CCccc
Confidence            35666655  333 57789999999999875 36788999 66554

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.79  E-value=0.00024  Score=36.53  Aligned_cols=25  Identities=24%  Similarity=0.611  Sum_probs=19.7

Q ss_pred             EEEEeeEee-ecC-CeEEEEeCCCcEEEe
Q psy4606          29 IKLVCKAKG-YPR-PHITWKREDGQEIII   55 (69)
Q Consensus        29 ~~l~C~~~g-~P~-P~~~W~~~~~~~~~~   55 (69)
                      +.|.|.+.| .|. |.+.|++ + ..+..
T Consensus       135 ~~l~C~~~g~~P~~~~v~W~~-~-~~l~~  161 (207)
T 1ypz_E          135 TNVACLVKDFYPKEVTISLRS-S-KKIVE  161 (207)
T ss_dssp             TEEEEEEEEESSSCCEEEEEC-S-SEEEE
T ss_pred             CeEEEEEeeEeCCCeEEEEec-C-CcccC
Confidence            699999998 565 7999999 5 56543

>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A* 1t80_A* 2icn_A* 3es6_A* 1zag_A*

Probab=97.78  E-value=7.3e-05  Score=40.51  Aligned_cols=56  Identities=23%  Similarity=0.470  Sum_probs=34.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      ++|.+...  ...   ..+..+.|.|.|.| +|.+ .++|.+ +|+.+..+....+..+.+++|
T Consensus       185 ~~P~v~v~--~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~p~~Dgtf  242 (278)
T 1t7v_A          185 DPPSVVVT--SHQ---APGEKKKLKCLAYDFYPGKIDVHWTR-AGEVQEPELRGDVLHNGNGTY  242 (278)
T ss_dssp             BCCEEEEE--EEE---CTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECCCSEEEEEEETTTTEE
T ss_pred             CCCccccc--cCC---ccCCceeEEEEEeeEEcCcEEEEEEE-CCEEccCcccccceECCCCCE
Confidence            56766543  111   14667899999999 7776 588999 887764222123445555543

>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} PDB: 3p77_A*

Probab=97.78  E-value=4.1e-05  Score=41.43  Aligned_cols=40  Identities=38%  Similarity=0.768  Sum_probs=29.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++|.+...  +.    ..+..++|.|.|.| +|.+ .++|.+ +|+.+.
T Consensus       182 ~~P~v~v~--~~----~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  223 (275)
T 3p73_A          182 VQPEVRVW--GK----EADGILTLSCHAHGFYPRPITISWMK-DGMVRD  223 (275)
T ss_dssp             BCCEEEEE--EE----EETTEEEEEEEEEEEBSSCCEEEEEE-TTEECG
T ss_pred             CCCeEEEE--ee----ccCCCceEEEEEEEEcCCCCEEEEEE-CCEECC
Confidence            56766543  21    24678999999999 8887 799999 787653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.78  E-value=4e-05  Score=43.11  Aligned_cols=46  Identities=24%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             eEEEEc----CCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606           3 YLDVVV----PPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~   51 (69)
                      .|.|..    +|.+...+ +. ....+|+.+.|.|.+.| .|.| .+.|++ ++.
T Consensus       113 ~l~V~~~~~~~P~i~~~~-~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~  164 (444)
T 1igt_B          113 TVTVSSAKTTAPSVYPLA-PV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSL  164 (444)
T ss_dssp             EEEECSCCCBCCEEEEEC-CC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             EEEecCCCCCCCceeEec-cc-ccCCCCCcEEEEEEEcceeCCCcEEEEec-CCC
Confidence            466653    45554321 21 12368999999999999 4888 999998 554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.78  E-value=4.6e-05  Score=39.69  Aligned_cols=30  Identities=20%  Similarity=0.583  Sum_probs=27.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.+.|.|.+.+.|++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   37 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYR   37 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEE
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEE
Confidence            556778899999999999999999999998

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=97.78  E-value=3.3e-05  Score=40.41  Aligned_cols=28  Identities=32%  Similarity=0.792  Sum_probs=21.1

Q ss_pred             ecCCCeEEEEeeEee-ecCCe-EEEEeCCCc
Q psy4606          23 APEGGTIKLVCKAKG-YPRPH-ITWKREDGQ   51 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~P~-~~W~~~~~~   51 (69)
                      ...|+.+.|.|.+.| .|.|. +.|++ ++.
T Consensus       152 ~~~g~~v~l~C~~~~~~p~~~~v~W~~-~g~  181 (239)
T 3tv3_H          152 STSGGTAALGCLVKDYFPEPVTVSWNS-GAL  181 (239)
T ss_dssp             C--TTEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             hccCCcEEEEEEEeeEeCCCeEEEEEE-CCc
Confidence            446899999999999 66564 88998 554

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.78  E-value=0.0001  Score=41.95  Aligned_cols=27  Identities=33%  Similarity=0.988  Sum_probs=22.9

Q ss_pred             cCCCeEEEEeeEeee-cC-C-eEEEEeCCCc
Q psy4606          24 PEGGTIKLVCKAKGY-PR-P-HITWKREDGQ   51 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~-P~-P-~~~W~~~~~~   51 (69)
                      .+|+.+.|.|.+.|. |. | .+.|++ ++.
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~-~~~  168 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSE-SGQ  168 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcC-CCc
Confidence            589999999999995 77 6 999998 553

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.77  E-value=6e-05  Score=39.00  Aligned_cols=30  Identities=23%  Similarity=0.582  Sum_probs=26.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|. .|.|.|.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~   36 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQ   36 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEE
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEE
Confidence            55677889999999999 7899999999983

>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.77  E-value=4.5e-05  Score=40.48  Aligned_cols=29  Identities=28%  Similarity=0.662  Sum_probs=23.7

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+...+|.|.+.| +|.. .++|.+ ||+.+.
T Consensus       133 ~~~~~tL~C~~~gFyP~~i~v~W~k-ng~~~~  163 (236)
T 2p24_A          133 LGQPNTLICFVDNIFPPVINITWLR-NSKSVA  163 (236)
T ss_dssp             TTCCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             cCCcceEEEEEEEEcCCCeEEEEEE-CCEEcC
Confidence            4667999999999 6764 789999 887764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.77  E-value=8.4e-05  Score=38.74  Aligned_cols=28  Identities=29%  Similarity=0.669  Sum_probs=24.1

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.|.|  .|.+.|++.
T Consensus       137 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A          137 ELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            4588999999999999974  679999984

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.76  E-value=6.3e-05  Score=38.75  Aligned_cols=36  Identities=17%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +.+...  +....+.+|+.+.|.|.+.|.|.+.+.|++
T Consensus        25 ~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k   60 (237)
T 3sob_L           25 IQMTQS--PSSLSASVGDRVTITCRASQDVSTAVAWYQ   60 (237)
T ss_dssp             CCEEEE--CSEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             ceEEeC--CCeEEEeCCCcEEEEEecCCCCCceEEEEE
Confidence            344444  556788899999999999999999999998

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=97.76  E-value=6.8e-05  Score=35.05  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-----eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-----HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-----~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +.. .+.+|+.++|.|.+.+.|.+     .+.|+| +|..+.
T Consensus         7 ~kP~l~~~--p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k-~g~~l~   54 (108)
T 4hwn_A            7 PAPILRAV--PSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYK-DGRIVQ   54 (108)
T ss_dssp             CCCEEEEE--SCS-SCBTTCCEEEEEEC---------CCEEEEEE-TTEEEE
T ss_pred             CCCEEEec--CCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEE-CCcCcc
Confidence            45666655  322 36689999999999876655     499999 777654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.76  E-value=3.6e-05  Score=38.79  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=25.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCe---EEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPH---ITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~---~~W~~   47 (69)
                      +..+.+..|+.+.|.|.+.|.|.|.   +.|+|
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k   38 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWAR   38 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEE
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEE
Confidence            5567788999999999999988764   78998

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=97.76  E-value=3.5e-05  Score=40.01  Aligned_cols=46  Identities=24%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             eEEEE----cCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCc
Q psy4606           3 YLDVV----VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQ   51 (69)
Q Consensus         3 ~l~V~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~   51 (69)
                      .|.|.    .+|.+...  .....+..|..+.|.|.+.|. |. ..+.|++ ++.
T Consensus       122 ~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~-~g~  173 (232)
T 3qhz_H          122 LVTVSSASTKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GAL  173 (232)
T ss_dssp             EEEECSSCCBCCEEEEE--CC-------CEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             EEEEecCCCCCCEEEEe--cccccccCCCcEEEEEEEeeEeCCCeEEEEEE-CCE
Confidence            45554    35555533  222344569999999999994 42 3578998 554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.75  E-value=3.3e-05  Score=39.12  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             cCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEecC
Q psy4606          24 PEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ..+..+.|.|.+.| .|.|.+.|++ ++..+....
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~-~g~~i~~~~   48 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSD   48 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEE-TTEECCCCS
T ss_pred             EcCceEEEEEEEeccCCCceEEEEE-CCEEccCCC
Confidence            35778899999988 5699999999 777765443

>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*

Probab=97.75  E-value=4.8e-05  Score=42.51  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=24.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..++|.|.+.| +|.+ .++|.+ +|+.+.
T Consensus       195 ~~~~~~L~C~a~gFyP~~I~v~W~~-~G~~~~  225 (348)
T 1s7q_A          195 PEDKVTLRCWALGFYPADITLTWQL-NGEELI  225 (348)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             CCCcEEEEEEEeeeECCCcEEEEEE-CCEEcc
Confidence            4557999999999 8887 899999 887763

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.74  E-value=2.1e-05  Score=39.72  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          23 APEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +.+|+.+.|.|.+   |.|.+.|+| +|..+.
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k-~g~~i~  146 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLK-DGSIIS  146 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEE-TTEECC
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEE-CCEECc
Confidence            3489999999998   999999999 787764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.73  E-value=0.00016  Score=38.39  Aligned_cols=28  Identities=32%  Similarity=0.732  Sum_probs=24.2

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.+.|.  |.+.|++.
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            46889999999999999764  89999984

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.73  E-value=5.6e-05  Score=38.18  Aligned_cols=30  Identities=23%  Similarity=0.643  Sum_probs=24.9

Q ss_pred             ecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          23 APEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ...|+.+.|.|.+.| |.+ +.|+| +|..+..
T Consensus        11 ~~~G~~v~L~C~~~~-~~~-i~W~k-~g~~l~~   40 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DEN-LKWEK-NGQELPQ   40 (186)
T ss_dssp             EEETTEEEEECSSCC-CTT-CEEEE-TTEEECS
T ss_pred             EeCCcEEEEEEeCCC-CCc-eEEEE-CCEECCC
Confidence            467999999999998 544 99999 8887765

>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous ligand, phosphatidylcholine, MHC, antigen presentation, immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A* 1gzp_A* 1uqs_A* 3l9r_A*

Probab=97.73  E-value=5.6e-05  Score=41.14  Aligned_cols=28  Identities=43%  Similarity=0.990  Sum_probs=23.3

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+..++|.|.|.| +|.. .++|.+ +|+.+
T Consensus       198 ~~~~~~L~C~a~gFyP~~I~v~W~~-~g~~~  227 (286)
T 2h26_A          198 GPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQ  227 (286)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEE-TTEEC
T ss_pred             CCCcceEEEEEEEEECCceEEEEEE-CCeEc
Confidence            3567999999999 7877 689999 78765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=97.73  E-value=8.7e-05  Score=37.73  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +..+.|.|.+.|.|.|.+.|++ ++..+
T Consensus       115 ~~~v~L~C~~~~~p~~~~~W~~-~g~~l  141 (182)
T 1hnf_A          115 CINTTLTCEVMNGTDPELNLYQ-DGKHL  141 (182)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEE-SSCEE
T ss_pred             cCcEEEEeEccCCCCCEEEEEE-CCEEC
Confidence            3479999999999999999999 77776

>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain, beta-2 microglobulin, ovalbumin-derived...; MHC-I, single chain MHC-I, glycoprotein; 1.80A {Mus musculus} PDB: 2qrs_A 2qri_A

Probab=97.73  E-value=4.1e-05  Score=43.76  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++.+|.+...  +... ...+...+|.|.+.| +|.. .++|.+ ||+.+.
T Consensus        24 l~~~P~v~v~--~~~~-~~~~~~~~L~C~v~gFyP~~I~v~W~k-ng~~~~   70 (422)
T 2qrt_A           24 IQKTPQIQVY--SRHP-PENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIP   70 (422)
T ss_dssp             CCBCCEEEEE--ESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             eecCCceEEE--eCCc-ccCCCCeEEEEEEEEEECCCCEEEEEE-CCEECc
Confidence            3456766543  1111 345677999999999 7874 789999 787653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.72  E-value=1.5e-05  Score=41.14  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             eEEecCCCeEEEEee---EeeecCCeEEEEeCCC
Q psy4606          20 DIMAPEGGTIKLVCK---AKGYPRPHITWKREDG   50 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~---~~g~P~P~~~W~~~~~   50 (69)
                      .+.+..|+.+.|.|.   +.|.|.|.++|+| +|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k-~g   34 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFK-LG   34 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEE-EE
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEE-cC
Confidence            356778999999994   5688999999999 44

>4f7e_A CD1D antigen, D polypeptide; protein-glycolipid complex, MHC-fold, IG-fold, antigen prese TCR, membrane, immune system; HET: 0SH NAG; 2.40A {Bos taurus} PDB: 4f7c_A*

Probab=97.72  E-value=7.1e-05  Score=40.76  Aligned_cols=28  Identities=43%  Similarity=0.954  Sum_probs=23.3

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+..+.|.|.|.| +|.+ .++|.+ +|+.+
T Consensus       198 ~~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~  227 (283)
T 4f7e_A          198 GPGRLLLVCHVSGFYPKPVRVMWMR-GEQEE  227 (283)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEE-TTEEC
T ss_pred             CCCcEEEEEEECcEEcCceEEEEEE-CCccc
Confidence            3578999999999 8876 689999 78765

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.72  E-value=2.5e-05  Score=40.31  Aligned_cols=37  Identities=8%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +.+...  +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus        24 ~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   60 (233)
T 3bqu_C           24 TTVTQS--PASLSMSIGEKVTIRCITSTDIDDDMNWYQQ   60 (233)
T ss_dssp             CCEEEE--CSBC-------CCEEEEEEEEESSCEEEEEE
T ss_pred             eeEEEc--CCeEEEecCCCEEEEEecCCcCCCeEEEEEE
Confidence            444443  5556788999999999999999999999983

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.72  E-value=9.7e-05  Score=34.72  Aligned_cols=31  Identities=13%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+  .+.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (113)
T 1sq2_N            7 PRSVTKETGESLTINCVLRDASYALGSTCWYRK   39 (113)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             CccEEEecCCCEEEEEEECCCcCCCCEEEEEEe
Confidence            5567788999999999998865  678999984

>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein membrane-associated; MHC, immunoglobulin domain, immune system, antigen presentat glycosylation; HET: NAG FUC; 2.90A {Homo sapiens}

Probab=97.71  E-value=2.3e-05  Score=44.39  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +.+|.+...+ . . ....+...+|.|.+.| +|.. .++|.+ ||+.+.
T Consensus         2 ~~~P~V~v~~-~-~-~~~~~~~~tL~C~v~~FyP~~i~v~W~~-ng~~~~   47 (392)
T 3s6c_A            2 QRTPKIQVYS-R-H-PAENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIE   47 (392)
T ss_dssp             CBCCCCEEEE-S-S-CCCSSSCEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCCCEEEEEc-C-C-ccccCCcEEEEEEEeeEECCCcEEEEEE-CCeECC
Confidence            4567655421 1 1 1235677899999999 5543 789999 787653

>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}

Probab=97.70  E-value=3.6e-05  Score=44.32  Aligned_cols=45  Identities=20%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      |..+|.+...+  . .....+...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        27 i~~~P~V~v~~--~-~~~~~~~~~tL~C~v~gFyP~~I~v~W~~-ng~~~~   73 (443)
T 3nwm_A           27 IQKTPQIQVYS--R-HPPENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIP   73 (443)
T ss_dssp             CCBCCEEEEEE--S-SCCCTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECS
T ss_pred             eeeCCEEEEEc--C-CcccCCCCEEEEEEEcCeECCceEEEEEE-CCEECC
Confidence            45678776531  1 12234677899999999 6666 789999 787764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.70  E-value=9.8e-05  Score=38.25  Aligned_cols=31  Identities=26%  Similarity=0.591  Sum_probs=26.9

Q ss_pred             CceEEecCCCeEEEEeeEee---ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG---YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g---~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|   .|.|.+.|++.
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~   42 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKG   42 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEE
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeC
Confidence            44567789999999999998   89999999993

>4gup_A Major histocompatibility complex class I-related protein; MHC class I-related protein, immune system; HET: 6FP; 3.20A {Homo sapiens}

Probab=97.70  E-value=3.7e-05  Score=41.70  Aligned_cols=43  Identities=33%  Similarity=0.779  Sum_probs=29.3

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCC-cEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEG-NTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~-~~~~~~~~~l~   69 (69)
                      ...++|.|.|.| +|.. .++|.+ ||+.+..+.. ..++.+++|+|
T Consensus       194 ~~~~~l~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~pn~Dgt~  239 (271)
T 4gup_A          194 PGVTALFCKAHGFYPPEIYMTWMK-NGEEIVQEIDYGDILPSGDGTY  239 (271)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECTTTEEECCCEECSSSCE
T ss_pred             CCcceeEEEEEEEECCceEEEEEE-CCEEecCCceeCCcEECCCCCE
Confidence            457899999999 8876 689999 8877643211 12455556654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.70  E-value=7.8e-05  Score=39.07  Aligned_cols=38  Identities=8%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      .+.+...  +..+.+.+|+.+.|.|.+.|.|     .|.+.|++.
T Consensus        34 ~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   76 (252)
T 3bkj_L           34 DVLMTQT--PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQ   76 (252)
T ss_dssp             CCCEEEE--CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             ccEEEeC--CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEE
Confidence            3444444  5567788999999999999987     699999984

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.69  E-value=5.3e-05  Score=38.90  Aligned_cols=27  Identities=41%  Similarity=0.752  Sum_probs=23.8

Q ss_pred             cCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|+.+.|.|.+   |.|.+.|+| +|..+.
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k-~g~~l~   42 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFK-DGKMIG   42 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEE-TTEEEE
T ss_pred             cCCCeEEEEEcC---CCCEEEEEE-CCEECC
Confidence            579999999998   899999999 787775

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.68  E-value=0.0002  Score=34.55  Aligned_cols=31  Identities=13%  Similarity=0.323  Sum_probs=26.2

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.  +.+.+.|++.
T Consensus         7 p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq   39 (126)
T 3moq_A            7 PRTATKETGESLTINCVLRDASFELKDTGWYRT   39 (126)
T ss_dssp             CSEEEEETTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             CceEEEeCCCCEEEEEEeecCccCCceEEEEEe
Confidence            566788899999999999875  6778999983

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.68  E-value=9e-05  Score=39.25  Aligned_cols=30  Identities=27%  Similarity=0.685  Sum_probs=25.1

Q ss_pred             ceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ....+.+|+.++|.|.+.|.|  .|.+.|++.
T Consensus       159 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          159 GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGCEEEEEEE
T ss_pred             CceEecCCCcEEEEEEecCccccccEEEEEEe
Confidence            346788999999999999865  389999983

>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A 3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A 1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...

Probab=97.68  E-value=8.7e-05  Score=40.16  Aligned_cols=41  Identities=32%  Similarity=0.602  Sum_probs=28.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++|.+...  ...  . .+..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus       183 ~~P~v~v~--~~~--~-~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  225 (276)
T 1k5n_A          183 DPPKTHVT--HHP--I-SDHEATLRCWALGFYPAEITLTWQR-DGEDQT  225 (276)
T ss_dssp             BCCEEEEE--EEE--E-ETTEEEEEEEEEEEBSSCCEEEEEE-TTEECG
T ss_pred             cCceeEEE--cCC--C-CCCceeEEEEEeCeECCcEEEEEEE-CCEEcc
Confidence            56766543  211  1 3568999999999 5654 789999 887764

>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation, glycoprote immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC; 2.21A {Human herpesvirus 5}

Probab=97.68  E-value=9.4e-05  Score=40.26  Aligned_cols=28  Identities=21%  Similarity=0.527  Sum_probs=23.3

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..+.|.|.|.| +|.+ .++|.+ +|+.+.
T Consensus       202 ~~~~~L~C~a~gFyP~~I~v~W~~-nG~~~~  231 (281)
T 3d2u_A          202 DNRAEAFCTSYGFFPGEIQITFIH-YGDKVP  231 (281)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-ESSCCC
T ss_pred             cCcceEEEEEeceECCceEEEEEE-CCEEcc
Confidence            568999999999 8876 689999 787764

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=97.68  E-value=0.00017  Score=34.78  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ++.+...  +..+.+.+|+.++|.|.+.+...+.+.|++.
T Consensus         4 ~~~v~Q~--p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ   41 (128)
T 1nez_G            4 APELRIF--PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQ   41 (128)
T ss_dssp             CCEEEEE--SSCEEECTTCCEEEEEEEESCCSSCEEEEEE
T ss_pred             CCeeEEC--CCeEEEcCCCCEEEEEEeCccCCCcEEEEEe
Confidence            4556555  6667889999999999998766688999983

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.67  E-value=0.00017  Score=38.10  Aligned_cols=46  Identities=13%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.|..   +|.+...  + ...+.+|+.++|.|.+.+. .+.+.|+| +|..+
T Consensus        93 ~L~V~~~~~~P~i~~~--p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k-~g~~~  141 (242)
T 1p6f_A           93 DLVVTEMYDTPTLSVH--P-GPEVISGEKVTFYCRLDTA-TSMFLLLK-EGRSS  141 (242)
T ss_dssp             EEEEECCSCCCEEEEE--S-CSEEETTCEEEEEEECTTS-CSEEEEEE-CSSSC
T ss_pred             EEEeecccCCCceEcc--C-CCccCCCCcEEEEEecCCC-CCEEEEEE-CCCcc
Confidence            456653   5666654  3 2356789999999999764 56999999 66544

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.67  E-value=0.00013  Score=36.12  Aligned_cols=37  Identities=16%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +.+...  +..+.+.+|+.++|.|...+.+.+.+.|++.
T Consensus        17 ~~v~q~--p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq   53 (146)
T 2yc1_B           17 IVLTQS--PATLSVSPGERATLSCRASQSVRSYLAWYQQ   53 (146)
T ss_dssp             CCEEEE--CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             ceEEEe--CCEEEEecCCCEEEEEEECCCCCCEEEEEEE
Confidence            344444  5567888999999999998888889999984

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.67  E-value=7.4e-05  Score=34.72  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             CceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~   51 (69)
                      ...+.+..|+.++|.|.. .+.+.+.+.|++..+.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~   44 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQ   44 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTB
T ss_pred             CCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCc
Confidence            334678899999999998 6788899999994444

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.67  E-value=5.6e-05  Score=38.74  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=28.4

Q ss_pred             CceEEecCC--CeEEEEeeEeeecCCeEEEEeC--CCcEE
Q psy4606          18 SSDIMAPEG--GTIKLVCKAKGYPRPHITWKRE--DGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g--~~~~l~C~~~g~P~P~~~W~~~--~~~~~   53 (69)
                      +..+.+.+|  +.+.|.|.+.+ |.|.++|++.  ++..+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~   52 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFV   52 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccc
Confidence            467788899  99999999987 8899999883  35444

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.67  E-value=5.4e-05  Score=39.24  Aligned_cols=31  Identities=13%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             CceEEecCCCeEEEEeeEeeec----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|    .|.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~   42 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEE
Confidence            5567788999999999999988    889999984

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=97.67  E-value=2.8e-05  Score=46.68  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      ..+.+..|+.+.|.|.+.| |.|.+.|++ ++..+..
T Consensus       541 ~~v~v~~g~~~~L~C~~~s-p~a~v~W~~-~~~~l~~  575 (663)
T 1olz_A          541 RQHFFKHGGTAELKCSQKS-NLARVFWKF-QNGVLKA  575 (663)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEE-SSSBCCC
T ss_pred             eEEEEecCCcEEEEccCCC-CCCcEEEEE-CCeeccc
Confidence            4567889999999999999 999999999 6665543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.66  E-value=9e-05  Score=42.78  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=29.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PR-PHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~   54 (69)
                      .+|.+...+ +....+..|..+.|.|.+.|. |. ..++|++ +|+.+.
T Consensus       295 ~~p~v~~~~-p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k-~g~~~~  341 (512)
T 1zvo_C          295 QPLGVYLLT-PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEV-AGKVPT  341 (512)
T ss_pred             CCCEEEEEC-CChHHhccCCceEEEEEEeceECCCeEEEEEE-CCEecc
Confidence            355554331 332335579999999999995 43 3899999 666543

>3m17_A IGG receptor FCRN large subunit P51; immunoglobulin binding protein, cell membrane, disulfide BON glycoprotein, IGG-binding protein, immunoglobulin domain; 2.60A {Homo sapiens} PDB: 1exu_A 3m1b_A

Probab=97.66  E-value=0.00032  Score=37.80  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      ...+.|.|.+.| +|.+ .++|.+ +|+.+... ...+..+.+++|
T Consensus       191 ~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~-~~~~~p~~dgtf  234 (267)
T 3m17_A          191 PGFSVLTCSAFSFYPPELQLRFLR-NGLAAGTG-QGDFGPNSDGSF  234 (267)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEEEECC-CCEEEECTTSCE
T ss_pred             CCCceEEEEEcceEcceEEEEEEE-CCEeCccc-cccceeCCCCCE
Confidence            458999999999 7875 789999 78776432 234555555544

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.66  E-value=0.00014  Score=33.97  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.+.+ +.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~   37 (113)
T 1h5b_A            8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQ   37 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC-SEEEEEEE
T ss_pred             CCEEEEecCCcEEEEEEECCCC-ceEEEEEE
Confidence            5556788999999999998855 78999984

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.65  E-value=8.6e-05  Score=34.54  Aligned_cols=31  Identities=13%  Similarity=0.304  Sum_probs=25.6

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.  +.+.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (108)
T 2coq_A            7 PRIATKETGESLTINCVLRDTACALDSTNWYRT   39 (108)
T ss_dssp             CSEEEECTTCCEEEEEEECCSSEEEEEEEEEEE
T ss_pred             CceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEc
Confidence            556778899999999999875  4678999984

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.65  E-value=6.2e-05  Score=37.76  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=25.3

Q ss_pred             eEEecCCCeEEEEeeEee--ecCCeEEEEeCCCcEE
Q psy4606          20 DIMAPEGGTIKLVCKAKG--YPRPHITWKREDGQEI   53 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g--~P~P~~~W~~~~~~~~   53 (69)
                      .+.+.+|+.+.|.|.+.+  .|.|.+.|+| ++..+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k-~~~~i   39 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWER-GSTLV   39 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEE-TTEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEe-CCcee
Confidence            466789999999996544  6678999999 66443

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.64  E-value=0.00011  Score=34.59  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRED   49 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~   49 (69)
                      +..+.+.+|+.++|.|.+.+. |.+.+.|++.+
T Consensus        14 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~   46 (120)
T 2yz1_A           14 EKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGV   46 (120)
T ss_dssp             SSEEEECTTCCEEECCEESCCCSCCCEEEEESS
T ss_pred             CceEEEeCCCCEEEEeEECCCCCCcEEEEEcCC
Confidence            556788899999999999874 77899999953

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.64  E-value=7.2e-05  Score=38.26  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEeeEeeec---C-CeEEEEeCCCcEE
Q psy4606          23 APEGGTIKLVCKAKGYP---R-PHITWKREDGQEI   53 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P---~-P~~~W~~~~~~~~   53 (69)
                      +..|+.+.|.|.+.|.|   . +.+.|++ ++..+
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k-~~~~~   48 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFV-DDVEV   48 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEEE
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEE-CCccc
Confidence            67899999999999985   3 4899999 55544

>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system, SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}

Probab=97.64  E-value=4.6e-05  Score=39.89  Aligned_cols=46  Identities=22%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             EEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         5 ~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ....+|.+...+  .. ....+...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        97 ~~~~~P~V~v~~--~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~k-nG~~~~  144 (207)
T 4aen_A           97 ITNVPPEVTVLT--NS-PVELREPNVLICFIDKFTPPVVNVTWLR-NGKPVT  144 (207)
T ss_dssp             CCCBCCEEEEEE--SS-CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             ccCCCCeEEEEc--CC-cccccCceeEEEEEeeecCeeEEEEEEE-CCEECc
Confidence            344677665431  11 1123567899999999 7764 789999 787664

>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide, histocompatibility antig peptide complex; HET: FME NAG; 2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.62  E-value=9.7e-05  Score=40.12  Aligned_cols=29  Identities=34%  Similarity=0.840  Sum_probs=23.7

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus       195 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  225 (282)
T 1mhc_A          195 PKGDVTLRCWALGFYPADITLTWQK-DEEDLT  225 (282)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             CCCceeEEEEEccEECCcEEEEEEE-CCEecc
Confidence            4667999999999 8875 689999 787753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.62  E-value=0.00012  Score=38.23  Aligned_cols=31  Identities=10%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|     .|.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~   43 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   43 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEE
Confidence            5567788999999999999988     799999983

>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility complex, MHC, vomeronasal organ, VN receptors, pheromone receptors, pepti immune system; HET: NAG; 3.00A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.61  E-value=7.3e-05  Score=40.43  Aligned_cols=29  Identities=45%  Similarity=0.896  Sum_probs=21.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.|.| +|.. .++|.+ +|+.+.
T Consensus       194 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  224 (274)
T 1zs8_A          194 PEGNVTLRCWALGFYPADITLTWKR-DGKNHT  224 (274)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCceEEEEEEeceECCCeEEEEEE-CCcccC
Confidence            3567899999999 7875 689999 887763

>1u58_A MHC-I homolog M144; MCMV, MHC-I homolog, immune system; 1.90A {Murid herpesvirus 1} SCOP: b.1.1.2 d.19.1.1 PDB: 1pqz_A

Probab=97.61  E-value=0.00016  Score=38.83  Aligned_cols=43  Identities=23%  Similarity=0.594  Sum_probs=29.3

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCc---EEEec-C-CcEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQ---EIIIK-E-GNTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~---~~~~~-~-~~~~~~~~~~l~   69 (69)
                      +..+.|.|.|.| +|.. .++|.+ ||+   .+..+ . ...+..+.+++|
T Consensus       158 ~~~~~L~C~a~gFyP~~I~v~W~~-ng~~~~~~~~~~~~~~~~~pn~Dgty  207 (253)
T 1u58_A          158 EGGMRLRCFARDYYPADLEIRWWK-DDGGGGALPQTSKQHHDPLPSGNGLY  207 (253)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEE-ECSSSCEEECCCSCCCCCEECSSSCE
T ss_pred             CCcccEEEEEeeEeCCccEEEEEE-CCcccccccCCceeecceEeCCCCCE
Confidence            478999999999 8876 588999 788   65433 1 223445555543

>4ah2_B HLA class II histocompatibility antigen gamma CHA class II histocompatibility antigen\,DRB1-1...; MHC II, immune system, SELF antigen; 2.36A {Homo sapiens}

Probab=97.60  E-value=0.00012  Score=38.84  Aligned_cols=28  Identities=39%  Similarity=0.740  Sum_probs=22.5

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus       141 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~  170 (229)
T 4ah2_B          141 QHHNLLVCSVSGFYPGSIEVRWFR-NGQEEK  170 (229)
T ss_dssp             -CCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCceeEEEEccEeCCCEEEEEEE-CCEEcc
Confidence            456899999999 8887 799999 776653

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.60  E-value=0.0001  Score=35.23  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=26.8

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRED   49 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~   49 (69)
                      +..+.+.+|+.++|.|.+.+. |.+.+.|++..
T Consensus        10 p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~   42 (127)
T 2jju_A           10 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGA   42 (127)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEECS
T ss_pred             CCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecC
Confidence            456778899999999999875 77899999943

>3bev_A Major histocompatibility complex class I glycoprotein haplotype B21; MHC class I, chicken, BF21, 11MER, peptide, bulge, water cushion, immune response, immunoglobulin domain, MHC I; 2.10A {Gallus gallus} PDB: 3bew_A

Probab=97.59  E-value=0.00018  Score=38.95  Aligned_cols=42  Identities=33%  Similarity=0.729  Sum_probs=27.9

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCC-cEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEG-NTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~-~~~~~~~~~l~   69 (69)
                      +.. .|.|.|.| +|.+ .++|.+ +|+.+..+.. ..+..+.+++|
T Consensus       193 ~~~-~L~C~a~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~p~~Dgtf  237 (274)
T 3bev_A          193 GIL-TLSCRAHGFYPRPIVVSWLK-DGAVRGQDAQSGGIVPNGDGTY  237 (274)
T ss_dssp             TCS-EEEEEEEEEBSSCCEEEEEE-TTEEECTTEEEEEEEECTTSCE
T ss_pred             Ccc-EEEEEEeeeeCCceEEEEEE-CCcccCCceeecceEECCCCCE
Confidence            345 99999999 6776 789999 8877643221 23445555543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.59  E-value=0.00014  Score=37.81  Aligned_cols=28  Identities=25%  Similarity=0.631  Sum_probs=24.8

Q ss_pred             eEEecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      ...+.+|+.+.|.|.+.|.|  .|.+.|++
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k   40 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVR   40 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEE
Confidence            46778999999999999987  68899998

>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1c16_A 1ypz_A*

Probab=97.59  E-value=9.4e-05  Score=39.72  Aligned_cols=41  Identities=34%  Similarity=0.725  Sum_probs=28.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++|.+...+.+     ..+..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus       167 ~~P~v~v~~~~-----~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  209 (260)
T 1r3h_A          167 DPPKAHVTRHP-----RPEGDVTLRCWALGFYPADITLTWQK-DGEELT  209 (260)
T ss_dssp             BCCEEEEECCC-----CTTSEEEEEEEEESCBSSCCCCEEEE-SSCBCC
T ss_pred             CCCeeEEEccc-----ccCCcceEEEEEeeEECCeEEEEEEE-CCEECC
Confidence            56766543211     14567999999999 7764 689999 777653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.58  E-value=0.00028  Score=37.26  Aligned_cols=42  Identities=17%  Similarity=0.239  Sum_probs=31.6

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+|.+...  +.. .+.+|+.++|.|.+.+ +.+.+.|+| ++..+.
T Consensus         6 ~kP~i~~~--P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k-~g~~~~   47 (242)
T 1p6f_A            6 PKPFIWAE--PHF-MVPKEKQVTICCQGNY-GAVEYQLHF-EGSLFA   47 (242)
T ss_dssp             CCCEEEEE--SCS-EEETTCCEEEEEECCT-TCCEEEEEE-TTEEEE
T ss_pred             CCCEEEee--CCC-ccCCCCcEEEEEeeCC-CCcEEEEEE-CCCccc
Confidence            46777766  444 6788999999999875 457899999 676543

>2p24_B H-2 class II histocompatibility antigen, A-U beta; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} PDB: 3cup_B* 1es0_B 3rdt_D 1lnu_B* 3c5z_D 3c60_D 3c6l_D

Probab=97.57  E-value=9.1e-05  Score=39.84  Aligned_cols=28  Identities=36%  Similarity=0.719  Sum_probs=21.1

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..++|.|.+.| +|.. .++|.+ ||+.+.
T Consensus       161 ~~~~~L~C~v~gFyP~~I~v~W~~-~g~~~~  190 (259)
T 2p24_B          161 NHHNTLVCSVTDFYPAKIKVRWFR-NGQEET  190 (259)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCceEEEEEEeeeeCCceEEEEEE-CCcccc
Confidence            567899999999 8864 789999 887763

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=97.57  E-value=0.00011  Score=39.20  Aligned_cols=37  Identities=16%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +.+...  +..+.+.+|+.+.|.|.+.+.|.+.+.|++.
T Consensus        25 ~~v~~~--p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~   61 (279)
T 2wbj_D           25 AVVSQH--PSWVISKSGTSVKIECRSLDFQATTMFWYRQ   61 (279)
T ss_dssp             CCEEEE--CSEEEEETTSCEEEEEEESSSCEEEEEEEEE
T ss_pred             ceEEeC--CCeEEecCCCeEEEEEEeCCCCCCeEEEEEe
Confidence            445544  6667889999999999999889999999984

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.57  E-value=0.0001  Score=39.15  Aligned_cols=37  Identities=14%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYP------RPHITWKRE   48 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P------~P~~~W~~~   48 (69)
                      +.+...  +..+.+.+|+.+.|.|.+.+.|      .+.+.|++.
T Consensus         6 ~~v~q~--p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~   48 (264)
T 2gjj_A            6 IVLTQT--PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQ   48 (264)
T ss_dssp             CCEEEE--CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             cceEec--CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEE
Confidence            444444  5667888999999999999987      789999984

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.56  E-value=0.00023  Score=33.22  Aligned_cols=31  Identities=13%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.+.+.+.|++.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq   37 (112)
T 2z35_A            7 GGQVALSEEDFLTIHCNYSASGYPALFWYVQ   37 (112)
T ss_dssp             CSEEEEETTCCEEECCEEECSSCCEEEEEEE
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCCeEEEEEE
Confidence            5567788999999999998877889999984

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=97.56  E-value=0.00019  Score=37.26  Aligned_cols=51  Identities=14%  Similarity=0.242  Sum_probs=35.4

Q ss_pred             eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCCe--EEEEeCCCcEEE
Q psy4606           2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPH--ITWKREDGQEII   54 (69)
Q Consensus         2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P~--~~W~~~~~~~~~   54 (69)
                      +.|.|..+|...... ........|+.++|.|.+.| .|.+.  +.|++ +.+.+.
T Consensus        80 ~~itVy~~P~~v~i~-~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llr-G~~~l~  133 (192)
T 1zxq_A           80 SNVSVYQPPRQVILT-LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLH  133 (192)
T ss_dssp             EEEEECBCCCCCEEE-EESSEECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEE
T ss_pred             EEEEEEeCCCCceEc-cCCccccCCCcEEEEEEeCCeECCCCcEEEEEc-CCEEee
Confidence            456777777543320 11235778999999999987 89876  68999 666654

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.56  E-value=0.00012  Score=35.03  Aligned_cols=31  Identities=16%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             CceEEecCCCeEEEEeeEeeec----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.+    .+.+.|++.
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (126)
T 4ffy_L            8 PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQ   42 (126)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEE
Confidence            5557788999999999998876    678999983

>1pfc_A IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcellus} SCOP: b.1.1.2

Probab=97.56  E-value=2.2e-05  Score=37.33  Aligned_cols=25  Identities=24%  Similarity=0.712  Sum_probs=20.6

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQ   51 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~   51 (69)
                      +..+.|.|.+.| +|.. .++|.+ +++
T Consensus        29 ~~~~~L~C~v~gFyP~~i~v~W~~-~~~   55 (113)
T 1pfc_A           29 KKKVSLTCMITGFYPADINVEWDS-SEP   55 (113)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSS-CCT
T ss_pred             CCceEEEEEEeeeECCCeEEEEEE-CCC
Confidence            456899999999 8887 899998 553

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=97.55  E-value=0.00046  Score=32.90  Aligned_cols=34  Identities=32%  Similarity=0.595  Sum_probs=29.1

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~   51 (69)
                      .+.-.+..|..+.|.|.+.+ .+.|.++|.|.++.
T Consensus        18 ~S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~   52 (120)
T 2aw2_A           18 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGT   52 (120)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSS
T ss_pred             cccceEecCCeEEEEccEEeccCCCceEEEecCCc
Confidence            45567888999999999999 79999999996653

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=97.54  E-value=0.00032  Score=36.72  Aligned_cols=29  Identities=17%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             eEEecCCCeEEEEeeEeeecCC--eEEEEeCC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRP--HITWKRED   49 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~~   49 (69)
                      .+.+..|+.+.|.|.+ |.|.|  .+.|++.+
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~   46 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLD   46 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESST
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeecc
Confidence            3678899999999999 99888  99999843

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.53  E-value=0.00035  Score=35.91  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             ceEEecCCCeEEEEeeEeeecCC---eEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRP---HITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P---~~~W~~~   48 (69)
                      ..+.+..|+.+.|.|.+.+.|.+   .+.|+|.
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~   44 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSS   44 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEET
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEEC
Confidence            34667889999999999887665   6999984

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.53  E-value=8.8e-05  Score=38.91  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=27.3

Q ss_pred             CceEEecCCCeEEEEeeE---eeecCCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKA---KGYPRPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~---~g~P~P~~~W~~~~~   50 (69)
                      +....+..|+.+.|.|.+   .|.|.|.+.|++.++
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~  160 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG  160 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence            445678899999999999   567999999998433

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.53  E-value=0.00016  Score=37.92  Aligned_cols=36  Identities=25%  Similarity=0.538  Sum_probs=29.5

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEee--ecCCeEEEEe
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKR   47 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~   47 (69)
                      |.+...  +..+.+.+|+.++|.|.+.|  .|.+.+.|++
T Consensus         7 ~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r   44 (256)
T 3juy_B            7 QVQLVQ--SGAEVKKPGASVKVSCQASGYRFSHFTVHWVR   44 (256)
T ss_dssp             CCEEEE--CCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eEEEEe--cCCceecCCCeEEEEEEeecccccCceEEEEE
Confidence            444444  66788999999999999998  4789999997

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.53  E-value=0.00011  Score=34.23  Aligned_cols=31  Identities=13%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             CceEEecCCCeEEEEeeEeeec----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+    .+.+.|++.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (111)
T 1j05_L            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             CCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEe
Confidence            4556788999999999998876    578999984

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.53  E-value=0.00017  Score=38.52  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      ..+|.+...  +. ..+.+|+.++|.|.+.+ +.+.+.|+| ++..
T Consensus         5 ~~kP~i~~~--P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k-~g~~   45 (257)
T 1b6u_A            5 HRKPSLLAH--PG-PLVKSEETVILQCWSDV-RFQHFLLHR-EGKF   45 (257)
T ss_dssp             CCCCEECCB--SC-SEEESSCCEEEEEEESS-CCSEEEEEE-ESTT
T ss_pred             CCCCEEEEc--CC-CEecCCCCEEEEEecCC-CCcEEEEEE-CCCC
Confidence            356777665  43 56778999999999975 578999999 5543

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.67  E-value=1.3e-05  Score=37.54  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=26.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++.
T Consensus         6 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~   36 (110)
T 1u3h_A            6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQ   36 (110)
Confidence            4556788999999999998888899999984

>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1de4_A*

Probab=97.53  E-value=0.00039  Score=37.64  Aligned_cols=41  Identities=22%  Similarity=0.508  Sum_probs=28.4

Q ss_pred             eEEEEeeEee-ecCC-eEEEEeCCCcE-EEecC-CcEEEeCCCCCC
Q psy4606          28 TIKLVCKAKG-YPRP-HITWKREDGQE-IIIKE-GNTMVPKSKDIF   69 (69)
Q Consensus        28 ~~~l~C~~~g-~P~P-~~~W~~~~~~~-~~~~~-~~~~~~~~~~l~   69 (69)
                      ...|.|.|.| +|.. .++|.+ +|+. +..+. ...+..+.+++|
T Consensus       198 ~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~p~~Dgtf  242 (275)
T 1a6z_A          198 VTTLRCRALNYYPQNITMKWLK-DKQPMDAKEFEPKDVLPNGDGTY  242 (275)
T ss_dssp             CEEEEEEEEEEBSSCCEEEEEE-TTEECCGGGSCCCEEEECTTSCE
T ss_pred             CceeEEEEeeeECCceEEEEEE-CCEEccccceeeCCcEECCCCCE
Confidence            8999999999 7765 689999 8877 43322 234555555554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.51  E-value=0.00021  Score=37.21  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCe-----EEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPH-----ITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~-----~~W~~~   48 (69)
                      +....+..|+.+.|.|.+.|.|.|.     +.|++.
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~   45 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWK   45 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEE
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEE
Confidence            4455677899999999999998886     999983

>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility antigen, immune system; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B* 1ktd_B* 1ieb_B* 1kt2_B* 3o6f_B 3t0e_B

Probab=97.50  E-value=0.0001  Score=38.86  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=22.5

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .+..++|.|.+.| +|.. .++|.+ +|+.+
T Consensus       135 ~~~~~~L~C~v~gFyP~~I~v~W~~-~g~~~  164 (224)
T 1fne_B          135 LEHHNLLVCSVSDFYPGNIEVRWFR-NGKEE  164 (224)
T ss_dssp             CCSCCEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             cCCceEEEEEECeEECCeEEEEEEE-CCeec
Confidence            4567899999999 6654 789999 78765

>3fru_A Neonatal FC receptor; complex (immunoglobulin-binding protein), complex (immunoglo binding protein) complex; HET: NAG FUL NDG BMA MAN GAL FUC; 2.20A {Rattus norvegicus} SCOP: b.1.1.2 d.19.1.1 PDB: 1frt_A* 1i1a_A*

Probab=97.50  E-value=0.00038  Score=37.61  Aligned_cols=42  Identities=24%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      ...+.|.|.|.| +|.. .++|.+ +|+.+... ...+..+.+++|
T Consensus       193 ~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~-~~~~~p~~dgtf  236 (269)
T 3fru_A          193 SGSSVLTCAAFSFYPPELKFRFLR-NGLASGSG-NCSTGPNGDGSF  236 (269)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECCCC-EEEEEECSSSCE
T ss_pred             CCcceEEEEEcceECCcEEEEEEE-CCEECccc-ccceeeCCCCCE
Confidence            458999999999 7875 789999 78765321 123344444443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.49  E-value=0.00022  Score=37.07  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=25.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.| ..+.|.+.+.|++
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r   37 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYK   37 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEE
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEE
Confidence            5567788999999999 7788999999998

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.48  E-value=0.00018  Score=38.50  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEee-ec-CCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKG-YP-RPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P-~P~~~W~~   47 (69)
                      ++.+...  +. ..+.+|+.+.|.|.+.+ .+ .+.+.|++
T Consensus       140 ~~~v~~~--p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r  177 (280)
T 3fku_X          140 QPGLTQP--PS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQ  177 (280)
T ss_dssp             CCSBBCC--SE-EEECTTCCEEEEEECCCCCCCTTCCEEEE
T ss_pred             eeEEEeC--Cc-EEEecCCCEEEEEEecCCCCCCceEEEEE
Confidence            4444443  44 78899999999999998 55 48999987

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.47  E-value=0.00028  Score=36.09  Aligned_cols=31  Identities=32%  Similarity=0.665  Sum_probs=25.7

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|  .+.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   39 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQ   39 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEe
Confidence            3345678899999999999865  789999984

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.47  E-value=0.00027  Score=34.26  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             EEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        11 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .+...  +..+.+.+|+.+.|.|.+.+.  +.+.|++.
T Consensus        19 ~v~q~--p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~   52 (133)
T 3khq_A           19 QIWQH--PRFAAKKRSSMVKFHCYTNHS--GALTWFRK   52 (133)
T ss_dssp             SEEEE--CSEEEECTTCCEEEEEEESSS--SCEEEEEE
T ss_pred             ceEEc--CceEEEeCCCeEEEEEEeCCC--CEEEEEEe
Confidence            34444  667788999999999999987  89999984

>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface glycoprotein CD1B; MHC, immunoglobulin domain, immune system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo sapiens}

Probab=97.47  E-value=0.00012  Score=41.53  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      |..+|.+...+  .. ....+...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus         4 i~~~P~V~v~~--~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~-ng~~~~   50 (397)
T 3ov6_A            4 IQRTPKIQVYS--RH-PAENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIE   50 (397)
T ss_dssp             CCBCCEEEEEE--SS-CCCTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECS
T ss_pred             CcCCCEEEEEc--CC-ccccCCcEEEEEEEeeEECCCCEEEEEE-CCeecc
Confidence            34677766431  11 2235677899999999 6654 688999 787653

>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A*

Probab=97.47  E-value=1.7e-05  Score=43.80  Aligned_cols=42  Identities=29%  Similarity=0.761  Sum_probs=0.0

Q ss_pred             CeEEEEeeEee-ecCC-eEEEEeCCCcEEEecC--CcEEEeCCCCCC
Q psy4606          27 GTIKLVCKAKG-YPRP-HITWKREDGQEIIIKE--GNTMVPKSKDIF   69 (69)
Q Consensus        27 ~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~--~~~~~~~~~~l~   69 (69)
                      ..++|.|.+.| +|.+ .++|.+ +|+.+..+.  ...+..+.+++|
T Consensus       197 ~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~p~~Dgtf  242 (319)
T 2wy3_A          197 GNITVTCRASSFYPRNITLTWRQ-DGVSLSHNTQQWGDVLPDGNGTY  242 (319)
T ss_dssp             -----------------------------------------------
T ss_pred             cceeEEEEEeeeeCCcEEEEEEE-CCEECCCCcccccceEECCCCcE
Confidence            47899999999 8988 899999 787664332  123444455544

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.46  E-value=0.00041  Score=36.23  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.+.  +.+.+.|++.
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   40 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRE   40 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEe
Confidence            566778899999999999885  6789999984

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=97.46  E-value=4.7e-05  Score=41.22  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=28.3

Q ss_pred             ceEEecCCCeEEEEeeEeee-----cCCeEEEEeCCCcEE
Q psy4606          19 SDIMAPEGGTIKLVCKAKGY-----PRPHITWKREDGQEI   53 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~-----P~P~~~W~~~~~~~~   53 (69)
                      .+..+..|+.+.|.|.+.|.     |.|.+.|++ +++.+
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~-~g~~l   46 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRL-GAELQ   46 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEES-SSCBC
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEe-CCEEC
Confidence            34567789999999999997     679999999 77665

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.45  E-value=0.00011  Score=37.45  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             CceEEecCCCeEEEEeeEeeec---CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP---RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P---~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|   .|.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~   40 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEe
Confidence            4456778999999999999987   489999984

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.44  E-value=0.0002  Score=33.54  Aligned_cols=31  Identities=13%  Similarity=0.390  Sum_probs=25.8

Q ss_pred             CceEEecCCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP------RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P------~P~~~W~~~   48 (69)
                      +..+.+.+|..++|.|.+.+.+      .+.+.|++.
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~   44 (114)
T 1eeq_A            8 PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQ   44 (114)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEE
Confidence            5567788999999999998866      378999984

>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC, immune system; 3.05A {Triticum aestivum}

Probab=97.44  E-value=0.00024  Score=38.17  Aligned_cols=28  Identities=32%  Similarity=0.621  Sum_probs=21.4

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +..++|.|.+.| +|.. .++|.+ +|+.+.
T Consensus       143 ~~~~tL~C~a~gFyP~~I~v~W~~-ng~~~~  172 (250)
T 4d8p_B          143 NHHNLLVCSVTDFYPAQIKVRWFR-NDQEET  172 (250)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEE-SSSEEC
T ss_pred             cCcceEEEEEcceecceEEEEEEE-CCEEcc
Confidence            457899999999 8876 789999 787764

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.43  E-value=0.00036  Score=32.63  Aligned_cols=31  Identities=23%  Similarity=0.534  Sum_probs=26.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.+.+.+.|++.
T Consensus         8 p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq   38 (112)
T 1fo0_B            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             CCeEEEecCCcEEEEEEeCCCCCceEEEEEE
Confidence            5557788999999999997777889999984

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.43  E-value=0.00037  Score=32.56  Aligned_cols=31  Identities=10%  Similarity=0.297  Sum_probs=25.7

Q ss_pred             CceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.+.+.+     .+.+.|++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq   43 (113)
T 1dlf_L            8 PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQ   43 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEccccccccCCCceEEEEEE
Confidence            4567788999999999998865     478999983

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.43  E-value=5.3e-05  Score=38.58  Aligned_cols=31  Identities=23%  Similarity=0.527  Sum_probs=26.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   36 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQ   36 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEE
Confidence            4456778999999999999999899999983

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.42  E-value=0.00025  Score=37.19  Aligned_cols=27  Identities=26%  Similarity=0.742  Sum_probs=23.6

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      ..+.+|+.++|.|.+.|.|  .+.+.|++
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r   40 (256)
T 3umt_A           12 ELVKPGASVKISCKTSGYTFTEYTMHWVK   40 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eEEcCCCCEEEEEEEecccccccEEEEEE
Confidence            4577899999999999866  78999997

>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21; immune system, BF21, immune response, immunoglobulin domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A

Probab=97.42  E-value=0.0005  Score=38.23  Aligned_cols=42  Identities=33%  Similarity=0.740  Sum_probs=27.9

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecC-CcEEEeCCCCCC
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKE-GNTMVPKSKDIF   69 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~-~~~~~~~~~~l~   69 (69)
                      +.. +|.|.|.| +|.. .++|.+ ||+.+..+. ...+..+.+++|
T Consensus       214 ~~~-~L~C~a~gFyP~~I~v~W~~-ng~~~~~~~~~~~~~pn~DgTf  258 (329)
T 2yf1_A          214 GIL-TLSCRAHGFYPRPIVVSWLK-DGAVRGQDAQSGGIVPNGDGTY  258 (329)
T ss_dssp             SCE-EEEEEEEEEBSSCCEEEEEE-TTEEECTTEEEEEEEECTTSCE
T ss_pred             CCc-ceEEEEEEEECCceEEEEEE-CCEEccCCccccceEECCCCCE
Confidence            345 99999999 8875 689999 888764221 123445555543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.41  E-value=0.00016  Score=38.10  Aligned_cols=28  Identities=21%  Similarity=0.571  Sum_probs=24.4

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.|.|  .|.+.|++.
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~   39 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRH   39 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEE
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEe
Confidence            4678999999999999985  789999983

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.41  E-value=0.00024  Score=36.05  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=28.3

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~   53 (69)
                      +..+.+..|+.+.|.|.+.+ .+.+.+.|++ ++..+
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~-~~~~i   40 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLF-NETSL   40 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEE-TTEEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEE-CCEEE
Confidence            55677889999999999976 5678999999 56543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.40  E-value=0.00021  Score=37.80  Aligned_cols=39  Identities=8%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      ..+.+...  +..+.+.+|+.++|.|.+.+.|     .+.+.|++.
T Consensus        14 ~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   57 (268)
T 1x9q_A           14 SDVVMTQT--PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQ   57 (268)
T ss_dssp             CCCCEEEE--CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             ccceEEee--CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEE
Confidence            34455554  5567788999999999999977     589999984

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.38  E-value=0.00022  Score=37.63  Aligned_cols=31  Identities=32%  Similarity=0.710  Sum_probs=25.9

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +....+.+|+.++|.|.+.|.|  .|.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~   39 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQ   39 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEE
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEE
Confidence            4456778999999999999975  789999983

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.38  E-value=0.00012  Score=37.45  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecC-CeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPR-PHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|.+.+.|. +.+.|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~   38 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLT   38 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEe
Confidence            55677889999999999999885 99999973

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=0.00026  Score=34.10  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=26.7

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRED   49 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~   49 (69)
                      +..+.+.+|+.++|.|.+.+. |.+.+.|++..
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~   47 (136)
T 2d9c_A           15 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGA   47 (136)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCCEEEETT
T ss_pred             CcEEEEcCCCCEEEEEEEcCCCCCceEEEEeec
Confidence            456778899999999999875 67889999953

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.37  E-value=0.00019  Score=36.22  Aligned_cols=28  Identities=11%  Similarity=0.194  Sum_probs=24.9

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~   36 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKG   36 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEES
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccC
Confidence            4567899999999998999999999983

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.37  E-value=0.00049  Score=36.09  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=25.3

Q ss_pred             CceEEecCCCeEEEEeeEee--ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG--YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~   47 (69)
                      +....+.+|+.+.|.|.+.|  .|.+.+.|++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k   46 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIR   46 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEE
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEE
Confidence            44456889999999999999  4588999998

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.37  E-value=0.00061  Score=32.43  Aligned_cols=31  Identities=26%  Similarity=0.591  Sum_probs=25.2

Q ss_pred             CceEEecCCCeEEEEeeEee---ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG---YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g---~P~P~~~W~~~   48 (69)
                      +..+.+..|+.+.|.|...+   .+.+.+.|++.
T Consensus        11 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~   44 (135)
T 1xt5_A           11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKG   44 (135)
T ss_dssp             CSEEEEETTSCEEECCEEEEETCCSCCEEEEEEE
T ss_pred             CceEEEeCCCCEEEeeEeecCCCCCccEEEEEee
Confidence            44566788999999999764   68899999984

>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid, antigen, transmembrane, disulfide bond, immune response, immunoglobulin domain, MHC I, polymorphism; HET: UNL NAG; 2.20A {Gallus gallus}

Probab=97.36  E-value=0.00057  Score=37.21  Aligned_cols=27  Identities=48%  Similarity=1.105  Sum_probs=21.8

Q ss_pred             CeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          27 GTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        27 ~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ..++|.|.|.| +|.+ .++|.+ +|+.+.
T Consensus       195 ~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~  223 (281)
T 3jvg_A          195 AQLLLVCRVTSFYPRPIAVTWLR-DGREVP  223 (281)
T ss_dssp             -CEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CcEEEEEEEcceeCCceEEEEEE-CCcccc
Confidence            56899999999 8876 789999 787653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.35  E-value=0.0012  Score=35.48  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             eEEEEc---CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           3 YLDVVV---PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         3 ~l~V~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      .|.|..   +|.+...  +... +.+|+.+.|.|.+. .+.+.+.|++ ++..
T Consensus       110 ~l~V~~~~~~p~~~~~--~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k-~g~~  157 (316)
T 3vh8_G          110 VIMVTGNHRKPSLLAH--PGPL-VKSGERVILQCWSD-IMFEHFFLHK-EGIS  157 (316)
T ss_dssp             EEEEECSSCCCEEEEE--SCSE-EETTCCEEEEEEES-SCCSEEEEEE-TTCC
T ss_pred             EEEEecCCCCCeEEec--CCCc-cCCCCeEEEEEcCC-CCCcEEEEEE-CCCc
Confidence            456653   4555554  3333 67899999999995 4667899999 5544

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.35  E-value=0.0004  Score=36.01  Aligned_cols=29  Identities=21%  Similarity=0.532  Sum_probs=25.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|.+.+ |.+.+.|++
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k   37 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQ   37 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEE
Confidence            55677889999999999877 889999998

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.34  E-value=0.0005  Score=32.27  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+. +.+.+.|++.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq   38 (116)
T 1fo0_A            7 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   38 (116)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CCcEEEecCCcEEEEeEecCCCCCeEEEEEEe
Confidence            556778899999999999886 6778999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	8e-10
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	8e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.001
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.001
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.001
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 8e-10
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
          VPP +   +S  +  A  G ++ LVC A G+P P ++W ++ 
Sbjct: 2  VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 43

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-07
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           P +   +   +   PE      +C+A G P P +   ++   
Sbjct: 2  GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 44

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.8 bits (92), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
            P I   +  +D  A  G  + L C A G P P I W+
Sbjct: 3  YAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-06
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 23 APEGGTIKLVCKAKGYPRPHITWKREDGQ 51
           P   T+K  C A G P P + W +   +
Sbjct: 17 VPAANTVKFRCPAGGNPMPTMRWLKNGKE 45

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.5 bits (91), Expect = 2e-06
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
          S D+MA  G    + C     P  +  + +
Sbjct: 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 39

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-06
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 12 ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
          IL     ++     GG ++ VCK     +PHI W +   +
Sbjct: 6  ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 45

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.3 bits (83), Expect = 3e-05
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
           P    ++    I+  +G  + + CK  G P P++ W
Sbjct: 2  APKYE-QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 37

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 4e-05
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITW 45
          +D  A  G  ++  C A G PRP + W
Sbjct: 9  TDTEADIGSDLRWSCVASGKPRPAVRW 35

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 4e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
            +   +G  +KL C  +G   P I W +
Sbjct: 4  VKLTVSQGQPVKLNCSVEGMEEPDIQWVK 32

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (81), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
          + P IL   +S  I    G T  L     G P P  TW
Sbjct: 1  LKPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATW 36

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 7e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 9  PPDI---LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
          PP I           I+   G  ++L     G P P + W++   Q
Sbjct: 4  PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ 49

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 2/37 (5%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
           P I   E        +G       +  G P P   W
Sbjct: 4  APKIF--ERIQSQTVGQGSDAHFRVRVVGKPDPECEW 38

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 4e-04
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITW 45
            +   EG + +  C   G P P +TW
Sbjct: 7  RSMTVYEGESARFSCDTDGEPVPTVTW 33

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 5e-04
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITW 45
           D     G +++L  K  G      TW
Sbjct: 8  EDQKVRAGESVELFGKVTGTQPITCTW 34

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.6 bits (73), Expect = 7e-04
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITW 45
                EG +    C+      P +TW
Sbjct: 9  YGTEVGEGQSANFYCRVIASSPPVVTW 35

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.6 bits (73), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
          +     EG    +VC       P I WK +   
Sbjct: 9  TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 41

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.001
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQ 51
          VPP        S   A  G    L C  + G P    TW ++   
Sbjct: 1  VPPSKPTVNIPSS--ATIGNRAVLTCSEQDGSPPSEYTWFKDGIV 43

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (72), Expect = 0.001
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 4  LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
          L V  PP I    S+    A  G   ++ C  +  P P           +
Sbjct: 2  LTVNGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 48

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (71), Expect = 0.001
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 9  PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
          PP +  +   S     EG T  LVCK++  P        + 
Sbjct: 2  PPRV--KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 40

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 31.8 bits (71), Expect = 0.001
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 8  VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
          V P     ++  D+   EG   +  CK +GYP P + W
Sbjct: 7  VKPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEVMW 42

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 31.0 bits (69), Expect = 0.003
 Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 6/42 (14%)

Query: 6  VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
             P   L  E S          + L C+A+  P     WK 
Sbjct: 8  EEQPAHTLFPEGS------AEEKVTLTCRARANPPATYRWKM 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.42
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.39
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.35
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.32
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.31
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.29
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.28
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.24
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.21
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.2
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.19
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.14
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.13
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.1
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.08
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.02
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.01
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.99
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.97
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.96
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.95
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.94
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.93
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.92
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.91
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.9
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.9
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.86
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.84
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.82
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.8
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.8
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.77
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.75
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.73
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.72
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.72
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.72
d2avga1	110	Cardiac myosin binding protein C, different domain	98.72
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.7
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.69
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.69
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.66
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.64
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.62
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.6
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.6
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.6
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.58
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.56
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.55
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.55
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.52
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.51
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.49
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.45
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.45
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.44
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.29
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.25
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.24
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.16
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.14
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.1
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.02
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.0
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.97
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.93
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.92
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.92
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.87
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.87
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.8
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.8
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.78
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.77
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.76
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.75
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.72
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.7
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.69
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.67
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.65
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.65
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.58
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.57
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.55
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.5
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.48
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.38
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.38
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.36
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.13
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.13
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.04
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.04
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.03
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.01
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.98
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.92
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	96.89
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.89
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.89
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.89
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.88
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.86
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.85
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.84
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.83
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.82
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.79
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.78
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.76
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.76
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.74
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.74
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.74
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.72
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.68
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.68
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.66
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.64
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.61
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.56
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.54
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.49
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.49
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.48
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.42
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.39
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.35
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.31
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.31
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.23
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.14
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.1
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.02
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	95.94
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.94
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.93
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.83
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.76
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.75
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.74
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	95.73
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.64
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.6
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.58
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.5
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.4
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.31
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.26
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.22
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.2
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.19
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	95.16
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	95.14
d2j88h1	68	Immunoglobulin heavy chain gamma constant domain 1	95.11
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.11
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	95.08
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.07
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	95.05
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.03
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	95.02
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	94.88
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.82
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	94.77
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	94.72
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.65
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.6
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.59
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.54
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	94.49
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	94.48
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	94.42
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	94.24
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.23
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.21
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	94.05
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	93.89
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.56
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.48
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.37
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.16
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	92.98
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.87
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	92.65
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	92.58
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	92.52
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.51
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	92.48
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.45
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	92.2
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	92.08
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.05
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	92.05
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.92
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	91.87
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.83
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.76
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	91.71
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.68
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	91.67
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	91.59
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	91.45
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	91.43
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	91.33
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	91.32
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	91.07
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.06
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.95
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	90.86
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	90.84
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.83
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.8
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	90.75
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	90.68
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	90.66
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	90.51
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	90.48
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	90.39
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	90.05
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.04
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	90.03
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	90.02
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	90.0
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	89.84
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	89.83
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	89.76
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.67
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	89.65
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	89.64
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	89.54
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.31
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	89.25
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	89.17
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	89.13
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	88.93
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	88.77
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.7
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	88.7
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.56
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	88.48
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	88.47
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	88.3
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	88.3
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.03
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	87.8
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	87.38
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	87.29
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	87.26
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	87.1
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	87.0
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	86.76
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	86.22
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	85.57
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	85.31
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	85.2
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	84.98
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	80.08

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.42  E-value=2.3e-13  Score=62.42  Aligned_cols=51  Identities=18%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM   61 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~   61 (69)
                      .+|.+...  .....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+...
T Consensus         3 eaP~f~~~--~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k-~~~~i~~~~~~~~   53 (98)
T d1g1ca_           3 EAPKIFER--IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYW   53 (98)
T ss_dssp             EEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSSEEE
T ss_pred             cCCeEecC--CCcEEEcCCCcEEEEEEEEEecCCeEEEEe-CceEEeeeeeeEE
Confidence            36788776  667788999999999999999999999999 7887765544443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.39  E-value=5.7e-13  Score=61.45  Aligned_cols=53  Identities=25%  Similarity=0.488  Sum_probs=42.8

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP   63 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~   63 (69)
                      .+|.+...  +.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+..+.++.+..
T Consensus         7 ~~P~f~~~--~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~~~~i~~~~~~~~~~   59 (102)
T d1fhga_           7 VKPYFTKT--ILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDY   59 (102)
T ss_dssp             EEEEEEEC--CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSSEEEEE
T ss_pred             CCCeEEcC--CCcEEEecCCcEEEEEEEEeccCCeEEEEe-eeccccceeeEeEEE
Confidence            46788776  667888899999999999999999999999 788876655444433

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=1.5e-12  Score=58.84  Aligned_cols=45  Identities=38%  Similarity=0.727  Sum_probs=38.4

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |.|...  +.+..+..|+.+.|.|.+.|.|.|.+.|++ +|..+....
T Consensus         2 P~f~~~--~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~   46 (89)
T d1cs6a4           2 PDWLDV--ITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQN   46 (89)
T ss_dssp             EEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             CCeEEE--CCCEEECCCCcEEEEEEEEEEcCCEEEEEE-eeccccccc
Confidence            677766  667888999999999999999999999999 788776543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1.7e-12  Score=59.30  Aligned_cols=46  Identities=20%  Similarity=0.450  Sum_probs=39.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      .|+|...  +.+..+.+|+.+.|.|.+.|.|.|.+.|++ +++.+..+.
T Consensus         1 ~P~f~~~--p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~l~~~~   46 (97)
T d1koaa1           1 QPRFIVK--PYGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSV   46 (97)
T ss_dssp             SCEEEEC--CCCCEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCSBT
T ss_pred             CCEEEEe--CCCEEEeCCCcEEEEEEEEEcCCCEEEEEE-eeeccceee
Confidence            4778776  667788899999999999999999999999 788776544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.32  E-value=3.2e-12  Score=57.96  Aligned_cols=48  Identities=27%  Similarity=0.345  Sum_probs=39.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCc
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN   59 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~   59 (69)
                      +|.+...  ..+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+..+.+.
T Consensus         2 ~P~i~~~--~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~-~~~~i~~~~~~   49 (93)
T d1wiua_           2 KPKILTA--SRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPEL   49 (93)
T ss_dssp             CCEECCC--CCEEEECSSBCCEEEEEEECCSSCEEEEEC-SSSSCBCSTTS
T ss_pred             CCeEEeC--CCcEEEeCCCeEEEEEEEEEecCCeEEEEe-eeeeceeeeee
Confidence            6888765  677889999999999999999999999999 67666554433

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=2.3e-12  Score=59.11  Aligned_cols=46  Identities=37%  Similarity=0.834  Sum_probs=37.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +||.+...+......+..|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~-~g~~i~   47 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIE   47 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECC
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe-CCcccc
Confidence            5788776533445567889999999999999999999999 777764

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.3e-13  Score=59.70  Aligned_cols=46  Identities=22%  Similarity=0.386  Sum_probs=37.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII   55 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~   55 (69)
                      +|++.....+....+.+|+.+.|.|.+.|.|.|.++|++ ++..+..
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k-~g~~~~~   47 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFPLP   47 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTTEECC
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEE-eecccee
Confidence            566654434677889999999999999999999999999 6766543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.9e-12  Score=56.76  Aligned_cols=42  Identities=33%  Similarity=0.608  Sum_probs=36.6

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII   54 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~   54 (69)
                      |.|...  +.+..+.+|+.+.|.|.+.|.|.| .+.|+| +|..+.
T Consensus         2 P~f~~~--P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k-~g~~i~   44 (85)
T d1rhfa2           2 PFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIG   44 (85)
T ss_dssp             CEEEEC--CCCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEECS
T ss_pred             CcEEEe--CCcEEEcCCCEEEEEEEEecCCcceEEEEEE-CCEECC
Confidence            677776  677888999999999999999999 899999 787764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.9e-12  Score=57.26  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=39.3

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM   61 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~   61 (69)
                      |++...  +.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+
T Consensus         1 P~~~~~--p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~~~~l~~~~~~~~   49 (101)
T d2cqva1           1 PQIIQF--PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKV   49 (101)
T ss_dssp             CEESCC--CCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSEEE
T ss_pred             CeEEee--CCcEEEeCCCcEEEEEEEEecCCCEEEEEe-CceeeccCCcEEE
Confidence            566655  667888999999999999999999999999 7777765544333

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.28  E-value=3.5e-12  Score=58.24  Aligned_cols=48  Identities=25%  Similarity=0.576  Sum_probs=36.3

Q ss_pred             cCCEEeecCCCceEEecCC---CeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           8 VPPDILNEESSSDIMAPEG---GTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g---~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      ++|.+...  +.+..+.+|   +.+.|.|.+.|.|.|.+.|++ ++..+....+
T Consensus         3 ~~P~f~~~--P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~-ng~~i~~~~~   53 (97)
T d1cs6a1           3 YGPVFEEQ--PAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPD   53 (97)
T ss_dssp             EEEEEEEC--CCCEEEETTCSCCEEEECCEEEEESCCEEEEEE-TTEECCCSTT
T ss_pred             cCCEEEEe--CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEE-eeeeccCCCC
Confidence            46777766  555555444   789999999999999999999 7877754433

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.24  E-value=7.6e-12  Score=56.41  Aligned_cols=44  Identities=20%  Similarity=0.609  Sum_probs=36.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      +|.+...+ ...+.+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.
T Consensus         2 aP~f~~~p-~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~i~   45 (89)
T d1biha4           2 APKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLS   45 (89)
T ss_dssp             EEEEEECC-CSEEEECTTSCEEEECEEEEESCCCCEEEE-TTEECC
T ss_pred             CCeEEECC-CCCEEEeCCCeEEEEEEEEEeCCCEEEEEe-CCccCc
Confidence            57776653 345678899999999999999999999999 787764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.21  E-value=2.2e-11  Score=55.02  Aligned_cols=42  Identities=36%  Similarity=0.652  Sum_probs=34.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ++|.+... .+....+.+|+.+.|.|.+.|.|.|.+.|++.++
T Consensus         3 ~~P~i~~~-~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~   44 (91)
T d1cs6a3           3 YAPSIKAK-FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG   44 (91)
T ss_dssp             EEEEEEEC-CCSEEEEETTCCEEEECEEEEESCCEEEEEECCS
T ss_pred             cCCeEEee-CCCcEEEecCCcEEEEEEEEEccCCEEEEEeccc
Confidence            56776653 2677888999999999999999999999999544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.5e-11  Score=54.95  Aligned_cols=45  Identities=27%  Similarity=0.482  Sum_probs=36.6

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +.|...  +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus         2 ~~F~~~--P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~-~~~~i~~~~   46 (92)
T d1epfa2           2 LMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKK   46 (92)
T ss_dssp             SEEEEC--CSSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGGGGC
T ss_pred             cEEEEc--CCCEEEeCCCcEEEEEEEeecCCCeEEEEE-cCccccccc
Confidence            455555  677888999999999999999999999999 676665443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.19  E-value=3.5e-11  Score=54.47  Aligned_cols=51  Identities=22%  Similarity=0.459  Sum_probs=40.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEecCCcEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTMV   62 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~~~~~~~~   62 (69)
                      .|.+...  +.++.+.+|+.+.|.|.+.|.|.| .+.|++ +|..+.....+...
T Consensus         2 ~P~i~~~--p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~   53 (94)
T d1biha1           2 YPVLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL   53 (94)
T ss_dssp             CCEECCC--CSEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTTTTTEEE
T ss_pred             CCEEEec--CCcEEEeCCCeEEEEEEecCCCCeeEEEEEe-eeeeeeeecceeee
Confidence            5777766  777889999999999999999977 699999 78877654443433

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.2e-12  Score=57.93  Aligned_cols=42  Identities=17%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      .|.+...  +.+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus         2 ~P~i~~~--~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~~~~~   43 (92)
T d2ifga1           2 VPTLKVQ--VPNASVDVGDDVLLRCQVEGRGLEQAGWIL-TELEQ   43 (92)
T ss_dssp             CCEEEEE--CCSSCCBTTCCEEEEEEEECSSCCCCCEEE-SCCCS
T ss_pred             CCEEEEe--CCCEEEeCCCEEEEeeeccCCCCcEEEEEE-CCcee
Confidence            5777776  556778899999999999999999999999 55443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.13  E-value=9.4e-12  Score=56.21  Aligned_cols=40  Identities=28%  Similarity=0.610  Sum_probs=34.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~g~~l~~~~~   45 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSAR   45 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSCCCCEEES-SSSTTCSSSS
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeCCeEEEEE-eecccccccc
Confidence            667889999999999999999999999999 7776654443

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.4e-11  Score=52.72  Aligned_cols=38  Identities=26%  Similarity=0.615  Sum_probs=33.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      |.++.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~g~~l~~~   40 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNL   40 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSS
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEE-eecccccc
Confidence            667888999999999999999999999999 78776543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.1e-10  Score=51.28  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      |.+... ....+.+..|+.+.|.|.+.|.|.|.+.|++ +|..+.
T Consensus         2 P~i~~p-~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~-~g~~i~   44 (107)
T d1iray3           2 PVIVSP-ANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVID   44 (107)
T ss_dssp             CEEEEC-CSEEEECCTTCCEEEEEEEEECTTCEEEEEE-TTEECC
T ss_pred             CCEEEE-CCCEEEEeCCCEEEEEEEeccCCCCeEEEEE-CCcccc
Confidence            666553 2455678889999999999999999999999 776654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.02  E-value=5.7e-10  Score=50.73  Aligned_cols=39  Identities=21%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k-~g~~i~~~~   48 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNP   48 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEE-TTEECCCCT
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEE-eeeeccccc
Confidence            456788899999999999999999999999 777765443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.01  E-value=5e-10  Score=50.93  Aligned_cols=36  Identities=31%  Similarity=0.651  Sum_probs=31.0

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK   56 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~   56 (69)
                      ...+..|+.+.|.|.+.|.|.|.+.|++ +|..+...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k-ng~~l~~~   49 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQE   49 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGG
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEE-CCEecccc
Confidence            3567889999999999999999999999 78777543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1e-09  Score=49.83  Aligned_cols=40  Identities=18%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~~~   57 (69)
                      +....+..|+.+.|.|.+.|.|. |.+.|+++++..+....
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~   47 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ   47 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeecc
Confidence            44566789999999999999885 79999996676665443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.97  E-value=9.1e-10  Score=50.65  Aligned_cols=39  Identities=26%  Similarity=0.554  Sum_probs=33.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      .+|.+... .+.+..+..|+.+.|.|.+.|.|.|.+.|++
T Consensus         3 ~~P~i~~~-~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k   41 (109)
T d2fdbp2           3 HRPILQAG-LPANASTVVGGDVEFVCKVYSDAQPHIQWIK   41 (109)
T ss_dssp             SCCEECTT-CSCCEEECTTCCEEEEEEEECSSCCEEEEEE
T ss_pred             CCCEEcCC-CCCCEEEecCCcEEEEEEEEEcCCCeEEEEe
Confidence            35766543 3677899999999999999999999999998

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.6e-10  Score=51.13  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             EEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         5 ~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      +|++||++...  ..   ...+....+.|.+.|.|.|.+.|++ +++.+....
T Consensus         1 tV~~PP~i~~~--~~---~~~~~~~~i~~~v~G~P~P~v~W~~-n~~~i~~~~   47 (105)
T d1wwca_           1 TVYYPPRVVSL--EE---PELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESK   47 (105)
T ss_dssp             CCCCCCCCCCC--CC---CCCCCEEEEEEEEECSSCCEEEEEE-TTEECCCSS
T ss_pred             CEEcCCeeEEe--CC---CEEEEEEEEEEEEEEeCCCeEEEEe-CccccCCCc
Confidence            36789988654  22   1245567789999999999999999 787765443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.4e-10  Score=52.38  Aligned_cols=45  Identities=29%  Similarity=0.476  Sum_probs=33.7

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~~   55 (69)
                      +||.+...  .....+..|+.+.|.|.+. |.|.|.+.|++ +++.+..
T Consensus         1 VPP~~p~~--~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~-~~~~i~~   46 (104)
T d1nbqa2           1 VPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPT   46 (104)
T ss_dssp             BCCCCCCC--CCBSEEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCS
T ss_pred             CCCccccc--CCCCEEecCCcEEEEEEeecCCCCCEEEEEE-CCEEccC
Confidence            36665544  3334577899999999985 89999999999 6766543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.2e-10  Score=49.05  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+.+|+.++|.|.+.|.|.|.+.|+++++....
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~   42 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ   42 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee
Confidence            4567899999999999999999999995444443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-09  Score=49.56  Aligned_cols=33  Identities=33%  Similarity=0.642  Sum_probs=28.5

Q ss_pred             CceEEecCCCeEEEEeeEeeec-CCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-RPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~~~~   50 (69)
                      +....+..|+.+.|.|.+.|.| .|.++|+|+++
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~   43 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNG   43 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECS
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCc
Confidence            6667888999999999999998 59999999433

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.1e-09  Score=50.38  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      |++||.+...  ..   ...+....+.|.+.|.|.|.+.|++ ++..+..+.
T Consensus         1 v~~pP~it~~--~~---~~~~~~~~i~~~v~G~P~P~i~W~~-~g~~l~~~~   46 (103)
T d1wwbx_           1 VHFAPTITFL--ES---PTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESK   46 (103)
T ss_dssp             CCCCCCCCCC--CC---CCCCCEEEEEEEEECSSCCEEEEEE-TTEEECCCS
T ss_pred             CccCCeeEEc--CC---CccceeEEEEEEEEEeCCCEEEEEE-CCEEeeeee
Confidence            4678887643  11   2357788899999999999999999 888876443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-09  Score=49.32  Aligned_cols=39  Identities=31%  Similarity=0.489  Sum_probs=33.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKRE   48 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~   48 (69)
                      .||.+...  +....+.+|+.+.|.|.+.|.|.| .+.|++.
T Consensus         1 GPP~i~~~--~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~   40 (101)
T d3b5ha1           1 GPPRVKAV--KSSEHINEGETAMLVCKSESVPPVTDWAWYKI   40 (101)
T ss_dssp             CSCCCEES--CSEEEECTTSCEEEEEECCCSSCCCEEEEEEC
T ss_pred             CCceEEEc--CCcEEECcCCeEEEEEEEEecCCeeEEEEEec
Confidence            47888766  667788999999999999999988 7999983

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.8e-10  Score=49.72  Aligned_cols=47  Identities=17%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +|.+.... .....+.+|+.+.|.|.+. .|.|.+.|++ ++..+..+.+
T Consensus         5 ~~~f~~~l-~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k-~g~~i~~~~~   51 (94)
T d1pd6a_           5 STAFQKKL-EPAYQVSKGHKIRLTVELA-DHDAEVKWLK-NGQEIQMSGS   51 (94)
T ss_dssp             TSSCSEEC-CSEEEEETTSCEEEEEECS-SSSSCCEEEE-SSSEECCCSS
T ss_pred             CCcEEEeC-CCCEEECcCCeEEEEEEEC-CCCceEEEEE-cCccceeeee
Confidence            45555442 3445688999999999985 5999999999 8888765443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.3e-10  Score=53.90  Aligned_cols=46  Identities=22%  Similarity=0.420  Sum_probs=35.9

Q ss_pred             EcCCEEee---cCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606           7 VVPPDILN---EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus         7 ~~~p~~~~---~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      |+||++..   ...+..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~-~~~~~   50 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK-AITQG   50 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEE-ECCCS
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEee-CCeEc
Confidence            46787632   112567889999999999999999999999998 45443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.1e-09  Score=50.56  Aligned_cols=32  Identities=25%  Similarity=0.606  Sum_probs=27.2

Q ss_pred             EecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEE
Q psy4606          22 MAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII   54 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~   54 (69)
                      .+..|+.+.|.|.+. |.|.|.+.|++ ++..+.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~-~~~~~~   45 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISML   45 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEE-TTEESB
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEe-CCeEec
Confidence            567899999999985 89999999999 676553

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.8e-09  Score=48.04  Aligned_cols=45  Identities=20%  Similarity=0.700  Sum_probs=31.8

Q ss_pred             cCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606          24 PEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      ..++.+.|.|.+.| +|.|.+.|++ +++.+............+|+|
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~-n~~~~~~~~~~~~~~~~~g~y   59 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLE-NGEELNAINTTVSQDPETELY   59 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEE-SSCEECCSEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEec-CCcEecccceeeEecCCCccE
Confidence            35778899999998 8999999999 777765433222334445654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-09  Score=48.96  Aligned_cols=45  Identities=11%  Similarity=0.135  Sum_probs=34.9

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEe
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIII   55 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~   55 (69)
                      .+|.+...  +..+.+.+|+.+.|.|.+.|.|. +.++|+| ++..+..
T Consensus         5 ~~P~~~~~--~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k-~~~~l~~   50 (93)
T d1n26a1           5 RCPAQEVA--RGVLTSLPGDSVTLTCPGVEPEDNATVHWVL-RKPAAGS   50 (93)
T ss_dssp             CCCCCCCC--TTEEEECTTCCEEEECTTSCTTCCSEEEEEE-ECSSSSC
T ss_pred             CCCcEEeC--CCCEEEeCCCcEEEEEEeecCCCCceEEEEE-ccccccc
Confidence            35666554  66788889999999999999765 5899999 6666543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.6e-09  Score=48.93  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=33.8

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEeCCC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSK   66 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~~   66 (69)
                      ...+.+|+++.|.|.+.| |.|.+.|++ +++.+....+++....++
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~-~g~~l~~~~~~~~~~~~~   50 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKF-QNGVLKAESPKYGLMGRK   50 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEE-SSSBCCCCSSSBCCTTTT
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeec-Ccccceeeeeeeecceee
Confidence            456889999999999999 789999999 777765554444443333

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=45.77  Aligned_cols=31  Identities=23%  Similarity=0.636  Sum_probs=26.3

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ...+..|+.+.|.|.+.|.|.|.+.|++.++
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~   40 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQID   40 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTC
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCc
Confidence            3455689999999999999999999998433

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.3e-08  Score=46.34  Aligned_cols=40  Identities=33%  Similarity=0.733  Sum_probs=32.0

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      |.+...  ...+.+.+|+.+.|.|.+.|.|.|.+.|++.++.
T Consensus         2 ~sV~t~--~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~   41 (102)
T d1f97a1           2 GSVYTA--QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGS   41 (102)
T ss_dssp             CEEECS--CSEEEEETTCCEEEECEEESCSSEEEEEEEEETT
T ss_pred             CCEEcc--CCcEEEeCCCEEEEEEEcCCCCCCeEEEEecccc
Confidence            444444  5567888999999999999999999999985444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.7e-10  Score=52.17  Aligned_cols=48  Identities=23%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             eEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeee-cCCeEEEEeCCCcEEE
Q psy4606           3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEII   54 (69)
Q Consensus         3 ~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~~~~~~~   54 (69)
                      .|.|++||.+..   +....+.+|+.+.|.|.+.|. |.+.+.|++ +++.+.
T Consensus         1 TL~V~~Pp~i~~---~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~-~~~~i~   49 (115)
T d2crya1           1 TLTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLE   49 (115)
T ss_dssp             CCCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEEC
T ss_pred             CeEEecCCEEec---CCCEEEecCCEEEEEEEeecCCCeeEEEEee-eeeeEe
Confidence            377889998764   344567889999999999995 566899999 666654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.2e-08  Score=44.46  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             CceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~   53 (69)
                      +....+.+|+.+.|.|.+. |.|.|.+.|++ ++..+
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k-~~~~~   44 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTR-LHNGK   44 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEE-GGGBC
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEec-CCcee
Confidence            5667888999999999997 58999999999 55443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.72  E-value=1.2e-09  Score=49.03  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=35.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP   63 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~   63 (69)
                      ..++.+.+|+.+.|.|.+ +.|.|.+.|++ +|+.+..+.++.+..
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k-~g~~i~~~~~~~~~~   51 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPLTASPDCEIIE   51 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSCCCBCCS-SSCCCCSSSSCEEEE
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCcEEEEEE-eeeecccceeEEEEe
Confidence            567888999999999997 67999999999 788876655544444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.72  E-value=1.6e-08  Score=44.74  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEE-EEeCCCcEEEecCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQEIIIKEG   58 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~-W~~~~~~~~~~~~~   58 (69)
                      +|.+...  +....+.+|+.++|.|.+.|.|.|.+. |++ ++..+.....
T Consensus         5 kpvi~~~--P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~-~~~~~~~~~~   52 (84)
T d1fnla1           5 KAVVFLE--PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISSQAS   52 (84)
T ss_dssp             CCEEEEE--SCCSEEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEESSCS
T ss_pred             CCEEEEC--CCCcEEeCCCeEEEEEEeccCCCCeEEEEee-eceeeeecce
Confidence            4555555  555678899999999999999998755 566 7777654443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.5e-08  Score=45.75  Aligned_cols=38  Identities=18%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      .+..+.+|+.+.|.|.+.| |.+.+.|++ +++.+....+
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~-~~~~l~~~~~   48 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLF-NSQSLQLTER   48 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEE-TTEECCCCTT
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEE-eeeecccccc
Confidence            3456789999999999877 668999999 7887765443

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.1e-08  Score=46.22  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeec---CCeEEEEeCCC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYP---RPHITWKREDG   50 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P---~P~~~W~~~~~   50 (69)
                      |.|...  +....+..|++++|.|.+.|.|   .|.+.|++ ++
T Consensus         5 ~~Fv~~--P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k-~~   45 (110)
T d2avga1           5 GLFVMR--PQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GK   45 (110)
T ss_dssp             CSEEEC--CCCEEEETTSEEEEEEEEECCSCSSSCEEEEEC-ST
T ss_pred             CEeEEC--CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEe-Cc
Confidence            345555  6678889999999999999998   68999998 44

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.70  E-value=2.2e-08  Score=45.93  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             CceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~   53 (69)
                      ...+.+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k-~g~~~   46 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLL-NEFPN   46 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEE-SSTTC
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEE-eeccc
Confidence            445788999999999998 689999999999 66544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.8e-09  Score=47.36  Aligned_cols=33  Identities=30%  Similarity=0.826  Sum_probs=27.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      ...+.+.+|+.+.|.|.+.|.|.|.+.|+++++
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~   43 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQG   43 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEET
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeee
Confidence            344567789999999999999999999998433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.4e-08  Score=44.88  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC--eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP--HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~~   54 (69)
                      .|+.+...  +....+..|+.++|.|.+.| .|.|  +++|++ +++.+.
T Consensus         3 ~P~~v~i~--p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~-~~~~l~   49 (103)
T d1iama1           3 TPERVELA--PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GEKELK   49 (103)
T ss_dssp             CCSEEEEC--CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEE
T ss_pred             CCCceEEe--CCCceEeCCCEEEEEEEecCCCCCCceEEEEcc-cccccc
Confidence            56677665  44456778999999999997 7776  578999 777764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=46.34  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=27.8

Q ss_pred             CceEEecCCCeEEEEeeEeeec---CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP---RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P---~P~~~W~~~   48 (69)
                      +.++.+..|+.+.|.|.+.|.|   .|.+.|+|.
T Consensus         7 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~   40 (113)
T d2dava1           7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKG   40 (113)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEES
T ss_pred             CceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEe
Confidence            6678889999999999999998   689999983

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.65  E-value=4.8e-08  Score=43.66  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=26.3

Q ss_pred             ecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          23 APEGGTIKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      +.+|+.+.|.|.+.+ .|.+.+.|+| +|+.+..
T Consensus        14 v~eG~~v~L~C~~~~~~p~~~~~W~k-ng~~~~~   46 (89)
T d1fnla2          14 FKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRKY   46 (89)
T ss_dssp             EETTCCEEEEEEECTTCCCEEEEEEE-TTEEEEE
T ss_pred             EccCCeEEEEEEecCCCCCcEEEEEE-cccccce
Confidence            558999999999975 6777999999 7877643

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.7e-08  Score=42.88  Aligned_cols=40  Identities=15%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEe-eecCCeEEEEeCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKRED   49 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~   49 (69)
                      +|.....+ .....+..|+.+.|.|.+. |.|.|.++|++.+
T Consensus         2 kP~~i~~p-~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~   42 (90)
T d1gsma1           2 KPLQVEPP-EPVVAVALGASRQLTCRLACADRGASVQWRGLD   42 (90)
T ss_dssp             CSEEEESC-CSEEEEETTCCEEEEEEECCSSTTCEEEEESST
T ss_pred             cCcEEeCC-CCeEEEEeCCcEEEEEEecCCCCccEEEEEEee
Confidence            34444442 4457788999999999985 7999999999843

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=45.83  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=31.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE   57 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~   57 (69)
                      ..+..+..|+.+.|.|++ +.|.|.+.|++ ++..+..+.
T Consensus         7 l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k-~~~~~~~~~   44 (90)
T d1x44a1           7 LEDTTAYCGERVELECEV-SEDDANVKWFK-NGEEIIPGP   44 (90)
T ss_dssp             CCCEEEETTEEEEEEEEC-SSSSCCCEEEE-TTEECCCST
T ss_pred             CCCEEEeCCCcEEEEEEE-CCCCceEEEEE-eecccCCCC
Confidence            567788999999999998 56999999999 777765443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.2e-08  Score=44.97  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEE-EEeCCCcEEEecCC
Q psy4606          10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQEIIIKEG   58 (69)
Q Consensus        10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~-W~~~~~~~~~~~~~   58 (69)
                      |.+...  +....+.+|+.+.|.|.+.|.|.|... |++ ++..+.....
T Consensus         2 P~It~~--P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~-~~~~~~~~~~   48 (82)
T d1f2qa1           2 PKVSLN--PPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNS   48 (82)
T ss_dssp             CCCEEE--SSCSEEETTCCEEEECCTTCC----CCEEEE-TTEECSCCSS
T ss_pred             CEEEEc--CCCeEEeCCCeEEEEEEEeeeeeecceeeee-eeeeeecccc
Confidence            555555  555667899999999999999988655 566 7766654443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.5e-08  Score=46.70  Aligned_cols=35  Identities=11%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             eEEecCCCeEEEEeeEee-ec--CCeEEEEeCCCcEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKG-YP--RPHITWKREDGQEIII   55 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g-~P--~P~~~W~~~~~~~~~~   55 (69)
                      ...+..|..++|.|.+.| .|  .+.+.|++ +++.+..
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~   48 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHY   48 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEEE
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEc-CCEEeee
Confidence            345778999999999987 55  45889999 8887753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.60  E-value=5e-08  Score=43.17  Aligned_cols=40  Identities=20%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEecCC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIKEG   58 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~~~~   58 (69)
                      +....+.+|+.+.|.|.+.|.|.|. +.|++ +|+.+.....
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~-~g~~~~~~~~   51 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFH-NGNLIPTHTQ   51 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEE-TTEECTTCCS
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeec-cccccccccc
Confidence            5556778999999999999988874 77888 7877654433

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.4e-08  Score=45.73  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      |+.+|.+...  +.. ....|...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus         2 v~~~P~V~v~--~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~v~   48 (100)
T d1k5nb_           2 IQRTPKIQVY--SRH-PAENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIE   48 (100)
T ss_dssp             CCBCCEEEEE--ESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             ccCCCeeEEE--cCC-cccCCCCEEEEEEECccCCCCcEEEEEE-CCEecC
Confidence            4567776543  111 2346888899999999 6766 789999 787764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.56  E-value=1.6e-07  Score=41.75  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             EecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606          22 MAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIII   55 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~   55 (69)
                      .+.+|+.+.|.|.+.+ .|.+.+.|+| +++.+..
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k-~g~~~~~   44 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQ-NGKSKKF   44 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEE-TTEEEEE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEe-ecccccc
Confidence            4668999999999975 6778999999 7877754

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.9e-08  Score=44.92  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=24.0

Q ss_pred             CCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      +....+.|.+.|.|.|.+.|++ +++.+..+..
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~-ng~~l~~~~~   46 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSF   46 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEE-TTEECCCCSS
T ss_pred             EEEEEEEEEEEEecCCeEEEEE-eeeEccCccc
Confidence            3344456689999999999999 8888765443

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=6.4e-08  Score=44.12  Aligned_cols=60  Identities=20%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606           6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus         6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      |+.+|.+...+ ..  ....|..++|.|.+.| +|.. .++|.+ +|..+..........+.+++|
T Consensus         1 v~~~P~V~v~~-~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~-~g~~~~~~~~~~~~~~~dgtf   62 (99)
T d1lk2b_           1 IQKTPQIQVYS-RH--PPENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIPKVEMSDMSFSKDWSF   62 (99)
T ss_dssp             CCBCCEEEEEE-SS--CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTTCEEEEEEECTTCCE
T ss_pred             CCCCCEEEEEc-CC--CccCCCcEEEEEEEEEEECCCcEEEEee-CCeecCCcEECceeECCCCCE
Confidence            35677765431 11  1245778999999999 7764 789999 777654322223334444443

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.52  E-value=7.6e-08  Score=43.70  Aligned_cols=28  Identities=43%  Similarity=0.990  Sum_probs=23.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      .++.++|.|.+.| +|.. .++|.+ ++..+
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~-~~~~~   44 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQ   44 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEE-TTEEC
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CcccC
Confidence            4568999999999 8887 799999 66654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.51  E-value=8.8e-09  Score=47.90  Aligned_cols=27  Identities=41%  Similarity=0.872  Sum_probs=24.2

Q ss_pred             EecCCCeEEEEeeE-eeecCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKA-KGYPRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~-~g~P~P~~~W~~~   48 (69)
                      .+.+|+.+.|.|.+ .|.|.|.+.|++.
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~   40 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKR   40 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEE
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeC
Confidence            45689999999997 8999999999993

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9e-08  Score=43.93  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             eEEecCCCeEEEEe------eEeeecCCeEEEEeCCCcEEEecCCcE
Q psy4606          20 DIMAPEGGTIKLVC------KAKGYPRPHITWKREDGQEIIIKEGNT   60 (69)
Q Consensus        20 ~~~~~~g~~~~l~C------~~~g~P~P~~~W~~~~~~~~~~~~~~~   60 (69)
                      ...+..|....|.|      .+.|.|.|.+.|++ +|+.+..+..+.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~k-dg~~l~~~~~~~   53 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLLDNIHF   53 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEE-TTEECCCCSSSE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEE-CCccccCCCcEE
Confidence            34567899999999      67899999999999 888886554433

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.7e-07  Score=42.05  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=28.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW   45 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W   45 (69)
                      .|.|. .  ..+..+..|+.+.|.|.+.|.|.|.+.|
T Consensus         2 ~P~f~-~--~~~~~v~~G~~v~l~C~~~g~p~p~~~~   35 (96)
T d2c9aa1           2 TPHFL-R--IQNVEVNAGQFATFQCSAIGRTVAGDRL   35 (96)
T ss_dssp             SCEEC-C--CCCEEECSSSCEEEEEEEESCCCSSCEE
T ss_pred             cCeec-c--cCCEEEeCCCEEEEEEEEeecCCCcEEE
Confidence            57776 3  6678899999999999999999886554

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6e-07  Score=40.40  Aligned_cols=41  Identities=32%  Similarity=0.590  Sum_probs=29.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .||.+...  .   ....++.+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus         2 ~PP~V~v~--~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   44 (94)
T d1t7va1           2 DPPSVVVT--S---HQAPGEKKKLKCLAYDFYPGKIDVHWTR-AGEVQE   44 (94)
T ss_dssp             BCCEEEEE--E---EECTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECC
T ss_pred             cCCEeEEe--c---cCCCCCCEEEEEEEEeEECCCCEEEEEE-CCEECC
Confidence            56766542  1   1234778999999999 7875 789999 776654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-06  Score=39.62  Aligned_cols=40  Identities=28%  Similarity=0.535  Sum_probs=29.4

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +||.+...      ....++.++|.|.+.| +|.. .++|.+ ||+.+.
T Consensus         3 vpP~V~v~------~~~~~~~~tL~C~~~gFyP~~i~v~W~~-dg~~~~   44 (94)
T d1de4a1           3 VPPLVKVT------HHVTSSVTTLRCRALNYYPQNITMKWLK-DKQPMD   44 (94)
T ss_dssp             BCCEEEEE------EEECSSCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEE------EcCCCCCEEEEEEEeeEECCCCEEEEEE-CCEECc
Confidence            57776532      1124567899999999 7876 899999 787764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=4e-06  Score=37.48  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=34.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKDIF   69 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~l~   69 (69)
                      .||.+...  .  . ...++.+.|.|.+.| +|.. .++|.+ +|..+.... .....+.+++|
T Consensus         2 ~PP~V~v~--~--~-~~~~~~~~L~C~~~gF~P~~i~v~W~~-ng~~~~~~~-~~~~~~~dgty   58 (91)
T d3frua1           2 EPPSMRLK--A--R-PGNSGSSVLTCAAFSFYPPELKFRFLR-NGLASGSGN-CSTGPNGDGSF   58 (91)
T ss_dssp             BCCEEEEE--E--E-ECSTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCCCE-EEEEECSSSCE
T ss_pred             CCCEEEEE--e--c-CCCCCCEEEEEEEEeEECCCCEEEEEE-CCEeCCccC-ccceecCCCCE
Confidence            46766542  1  1 123568999999999 7875 789999 776654322 23344455543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.9e-07  Score=39.72  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             EecCCCeEEEEeeEeee-cCCeEEEEeCCCcEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIII   55 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~-P~P~~~W~~~~~~~~~~   55 (69)
                      .+.+|+.+.|.|.+.+. |.+.+.|+| +|+.+..
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k-~g~~~~~   44 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKY   44 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEE-TTEECCS
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEE-eeecccc
Confidence            45689999999999774 566899999 7877643

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.24  E-value=1.1e-06  Score=40.09  Aligned_cols=44  Identities=25%  Similarity=0.445  Sum_probs=30.7

Q ss_pred             EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +++|.+...+ ..  ....+...+|.|.+.| +|.. .++|.+ ||+.+.
T Consensus         3 ~v~P~V~v~~-~~--~~~~~~~~tL~C~v~gF~P~~i~v~W~~-ng~~~~   48 (101)
T d1fnga1           3 NVAPEVTVLS-RS--PVNLGEPNILICFIDKFSPPVVNVTWLR-NGRPVT   48 (101)
T ss_dssp             CBCCEEEEEE-SS--CCCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CcCCeEEEeC-CC--cccCCCCEEEEEEEEeEECCCCEEEEEE-CCeecC
Confidence            4677765531 11  1235677899999999 7865 899999 787764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.16  E-value=3.8e-06  Score=38.08  Aligned_cols=31  Identities=29%  Similarity=0.702  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606          23 APEGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      ...++.++|.|.+.| +|. -.++|.+ +|+.+.
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   46 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRK-NGKLVM   46 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEE-CCEecc
Confidence            345678999999999 674 5789999 787664

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.14  E-value=1.7e-06  Score=39.41  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      .+|.+...+  .. ....+...+|.|.+.| +|. -.++|.+ +|+.+.
T Consensus         2 ~pP~V~v~p--~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~-ng~~v~   46 (100)
T d1muja1           2 EAPQATVFP--KS-PVLLGQPNTLICFVDNIFPPVINITWLR-NSKSVA   46 (100)
T ss_dssp             CCCEEEEEE--SS-CCCTTSCEEEEEEEEEECSSCCEEEEEE-SSSBCC
T ss_pred             CCCEEEEEc--CC-ccccCCCEEEEEEEEeEECCCCEEEEEe-CCeecc
Confidence            467665542  11 2346788899999999 564 5799999 776664

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=39.92  Aligned_cols=29  Identities=41%  Similarity=0.675  Sum_probs=23.3

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~-~g~~~~   50 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLE-DGQVMD   50 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEE-TTEECC
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CCEEcc
Confidence            4567899999999 7776 689999 777664

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.3e-06  Score=37.63  Aligned_cols=29  Identities=31%  Similarity=0.725  Sum_probs=22.9

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++.+.|.|.+.| +|.. .++|.+ +|....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~-~g~~~~   48 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN   48 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEE-CCEECC
Confidence            3568999999999 7765 789999 776543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2e-05  Score=34.96  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=23.3

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++.+.|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~   44 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQL-NGEELI   44 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEE-TTEEEC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEEeC
Confidence            4568999999999 7754 679999 777764

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.97  E-value=1e-05  Score=36.97  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             cCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEecCCcEEEeCCCC
Q psy4606          24 PEGGTIKLVCKAKG-YPRP-HITWKREDGQEIIIKEGNTMVPKSKD   67 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~~~~~~~~~~~~~   67 (69)
                      ..|...+|.|.+.| +|.. .+.|.+ +|..+..........++++
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~-ng~~~~~~~~~~~~~~~dg   60 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHD-HSVPVEGFGPTFVSAVDGL   60 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECSSCCCEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEE-CCeecCCcEeceEEeCCCC
Confidence            35777899999999 7765 689999 7766543332233334444

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.8e-05  Score=36.93  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +|.+...  |..+.+.+|+.++|.|...+...+.+.|++
T Consensus         1 a~~~~~~--P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           1 APELRIF--PKKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CCEEEEE--SSCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CCceEEc--CCEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            4666666  677888999999999999888888999987

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=7.7e-06  Score=37.09  Aligned_cols=28  Identities=21%  Similarity=0.609  Sum_probs=21.9

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+.+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   47 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQW-NGQPAE   47 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEE-CCEEcc
Confidence            457899999999 6754 689999 776543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=36.58  Aligned_cols=30  Identities=30%  Similarity=0.685  Sum_probs=23.9

Q ss_pred             cCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ..+...+|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   48 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLS-NGQSVT   48 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEE-CCEecc
Confidence            45678899999999 6764 689999 787764

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.87  E-value=3.8e-05  Score=34.28  Aligned_cols=29  Identities=34%  Similarity=0.942  Sum_probs=23.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .++.+.|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~   44 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQ-DGVSLS   44 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeE-CCeEcC
Confidence            3567899999999 7876 689999 776654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.87  E-value=9.9e-06  Score=36.73  Aligned_cols=27  Identities=19%  Similarity=0.593  Sum_probs=21.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQE   52 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~   52 (69)
                      .+..+.|.|.+.| +|.. .++|.+ +|..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~-~g~~   46 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTN-NGKT   46 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEE-CCEE
Confidence            4678999999999 7764 799998 6654

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.5e-06  Score=36.95  Aligned_cols=29  Identities=28%  Similarity=0.677  Sum_probs=22.9

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .+.|.+ +|..+.
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKA-DSSPVK   49 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEE-CCEECC
Confidence            3567999999999 6755 689999 776654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.80  E-value=1.4e-05  Score=36.10  Aligned_cols=29  Identities=38%  Similarity=0.691  Sum_probs=20.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+...+|.|.+.| +|.. .++|.+ +|..+.
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~-~g~~~~   47 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFR-NGQEEK   47 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEE-CCEEcC
Confidence            3556689999999 6764 789999 776653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.8e-05  Score=36.12  Aligned_cols=30  Identities=27%  Similarity=0.594  Sum_probs=24.4

Q ss_pred             cCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ..+..+.|.|.+.| +|.. .+.|++ +|+.+.
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~-~g~~~~   49 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQ-GSQELP   49 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEE-TTEECC
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEE-CCeEcC
Confidence            45788999999999 6766 899998 777654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.78  E-value=5.4e-06  Score=37.78  Aligned_cols=29  Identities=34%  Similarity=0.730  Sum_probs=23.4

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .+.|.+ +|+.+.
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~-~g~~~~   49 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKA-NGATIN   49 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEE-CCEECC
Confidence            3567899999999 7765 799999 777765

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=1.7e-05  Score=35.89  Aligned_cols=27  Identities=33%  Similarity=0.731  Sum_probs=21.4

Q ss_pred             CCeEEEEeeEee-ecC-CeEEEEeCCCcEE
Q psy4606          26 GGTIKLVCKAKG-YPR-PHITWKREDGQEI   53 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~   53 (69)
                      .+.+.|.|.+.| +|. -.++|.+ +|+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~-~g~~~   47 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKM-NGQPQ   47 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEE-CCeec
Confidence            467899999999 675 4789999 67654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.76  E-value=3.2e-06  Score=38.77  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+|.+...+ +..........+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus         7 ~~P~v~i~~-Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~-~g~~~~   53 (107)
T d1hxmb2           7 VSPKPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEE-KKSNTI   53 (107)
T ss_dssp             CSCBCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEE-SSSCCC
T ss_pred             CCCeEEEEC-CCHHHHccCCcEEEEEEEeEEeCCceEEEEEE-CCeEcc
Confidence            456554432 22222445678999999999 7765 588998 665543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3e-05  Score=35.37  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             ecCCCeEEEEeeEee-ecCC--eEEEEeCCCcEEE
Q psy4606          23 APEGGTIKLVCKAKG-YPRP--HITWKREDGQEII   54 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~~   54 (69)
                      +.+|..+.|.|.+.| +|.+  .+.|++ +++.+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~   46 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMK   46 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEec-cCceee
Confidence            468999999999987 8865  688998 776654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=9e-05  Score=33.09  Aligned_cols=28  Identities=39%  Similarity=0.806  Sum_probs=22.3

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ++.+.|.|.+.| +|.. .++|.+ +|+.+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~-~g~~~~   44 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQR-DGEDQT   44 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEE-CCEEcC
Confidence            568999999999 6754 689999 777654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.70  E-value=3.7e-05  Score=34.58  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=19.9

Q ss_pred             CCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      .+...+|.|.+.| +|. -.+.|.+ +|+.+.
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~-ng~~~~   45 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFR-NDQEET   45 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEE-CCEEcC
Confidence            3566789999999 674 5789999 776654

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=2.9e-05  Score=35.18  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=22.0

Q ss_pred             CCCeEEEEeeEee-ecCC---eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP---HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P---~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| .|.+   .++|.+ +|..+.
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~-~g~~~~   47 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFI-DDVEVH   47 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEE-SSCEEC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEE-CCcccc
Confidence            4567899999999 6765   788998 666553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=4.1e-05  Score=33.68  Aligned_cols=33  Identities=15%  Similarity=0.404  Sum_probs=26.6

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI   53 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~   53 (69)
                      +.+.+..|++++|.|.. +.|.+.+.|++ ++..+
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~-~~~~i   35 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKK-QKDKV   35 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEE-TTEEE
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEE-ecccc
Confidence            35677889999999986 56999999999 56554

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.65  E-value=7.1e-05  Score=33.72  Aligned_cols=27  Identities=33%  Similarity=0.746  Sum_probs=21.0

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQE   52 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~   52 (69)
                      ..+.++|.|.+.| +|.. .+.|.+ |++.
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~-ng~~   41 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWK-DDGG   41 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEE-ECSS
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEE-CCcc
Confidence            3567899999999 7765 578998 5544

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.1e-05  Score=34.62  Aligned_cols=29  Identities=31%  Similarity=0.707  Sum_probs=22.8

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKV-DGTPVT   49 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEE-CCEECC
Confidence            3567899999999 6764 799999 777654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=7.1e-05  Score=34.02  Aligned_cols=29  Identities=14%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             CCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPR-PHITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~   54 (69)
                      .++.++|.|.+.| +|. -.+.|.+ +|+.+.
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~-~g~~~~   48 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLH-NEVQLP   48 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEE-CCEECC
Confidence            4667999999999 775 5899998 776654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=4.1e-05  Score=34.91  Aligned_cols=29  Identities=34%  Similarity=0.760  Sum_probs=23.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      .+..+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKI-DGSERQ   49 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEE-CCEEcc
Confidence            3568999999999 7764 799998 777654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=35.32  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             CceEEecCCCeEEEEeeEe-eecCCeEEEEeCCCc
Q psy4606          18 SSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQ   51 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~   51 (69)
                      +..+...+|..+.|.|.+. +.|.|.+.|++ ++.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k-~~~   42 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYK-DDS   42 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEEC-SST
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEE-CCc
Confidence            4456677899999999885 68999999999 443

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.50  E-value=5e-05  Score=35.26  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             cCCCeEEEEeeEee-ecCC---eEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKG-YPRP---HITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P---~~~W~~~~~~~~~   54 (69)
                      ..+..+.|.|.+.| +|.+   .++|.+ ++..+.
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~-~g~~~~   63 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVH   63 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECS
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEee-CCcccC
Confidence            35778999999999 5753   678998 676553

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=8.7e-05  Score=33.73  Aligned_cols=28  Identities=18%  Similarity=0.496  Sum_probs=21.6

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCCcEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEI   53 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~   53 (69)
                      ....+.|.|.+.| +|.. .++|.+ ++...
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~-~~~~~   49 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKY-KNNSD   49 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEE-TTSCE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEE-CCccc
Confidence            4678999999999 8865 689998 55443

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.9e-05  Score=33.74  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=22.4

Q ss_pred             cCCCeEEEEeeEee-ecCC---eEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKG-YPRP---HITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g-~P~P---~~~W~~~~~~~~~   54 (69)
                      ..+..+.|.|.+.| +|..   .+.|.+ ++..+.
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~-~~~~~~   49 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH   49 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEE-TTEEEC
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEee-CCeECC
Confidence            35778999999999 6753   567888 676553

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00012  Score=33.28  Aligned_cols=28  Identities=36%  Similarity=0.720  Sum_probs=22.4

Q ss_pred             CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606          26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus        26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      ...+.|.|.+.| +|.. .++|.+ +|..+.
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKV-DNALQS   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEE-CCEECC
Confidence            568999999999 7765 799999 676543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.36  E-value=8.9e-05  Score=34.71  Aligned_cols=45  Identities=31%  Similarity=0.632  Sum_probs=29.2

Q ss_pred             cCCEEeecCCCceEEecCCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606           8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRP-HITWKREDGQEII   54 (69)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~   54 (69)
                      +||.+.... +.......+..++|.|.+.| +|.. .++|++ +|+.+.
T Consensus         3 ~PP~V~l~~-Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~-~g~~~~   49 (127)
T d1ogae2           3 FPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH   49 (127)
T ss_dssp             BCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             cCCEEEEEC-CCHHHhccCCcEEEEEEEEeccCCCeEEEEEE-CCEEcc
Confidence            466655431 22212234678999999999 7765 689998 777653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.00047  Score=31.47  Aligned_cols=30  Identities=20%  Similarity=0.476  Sum_probs=25.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|.....+...+.|++
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyr   36 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYK   36 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEE
Confidence            566778899999999998877778899997

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.13  E-value=0.0004  Score=31.66  Aligned_cols=30  Identities=23%  Similarity=0.502  Sum_probs=25.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.+.|.|...+.....+.|++
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyr   36 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFR   36 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEE
Confidence            666788899999999998776667889997

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.13  E-value=0.00077  Score=30.97  Aligned_cols=31  Identities=19%  Similarity=0.480  Sum_probs=25.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.....+.|++.
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ   38 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQ   38 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEE
Confidence            5556778899999999987776788999983

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.04  E-value=0.00074  Score=30.87  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=26.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.......+.+.|++.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq   38 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQ   38 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEe
Confidence            5567788999999999988777888999973

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.04  E-value=0.00091  Score=30.19  Aligned_cols=30  Identities=20%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      |..+.+.+|+.++|.|.........+.|++
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQ   37 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEE
Confidence            566778899999999998776667899997

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.03  E-value=0.0016  Score=28.48  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             CeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606          27 GTIKLVCKAKG-YPRP-HITWKREDGQEIII   55 (69)
Q Consensus        27 ~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~   55 (69)
                      ..+.|.|.+.| +|.. .+.|.+ +|..+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~-~g~~~~~   43 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVS-SKKITEF   43 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEEC-SSEEEEC
T ss_pred             CCCEEEEEEeeEECCCCEEEEEE-CCEEccC
Confidence            45689999999 7765 678998 7776543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.01  E-value=0.00072  Score=30.81  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=25.1

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+ .....+.|++
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyr   35 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLR   35 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEE
Confidence            56677889999999999877 4567899997

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.98  E-value=0.0011  Score=30.23  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=26.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.....-...+.|++.
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ   37 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQ   37 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEc
Confidence            6667888999999999987766778999973

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.92  E-value=0.001  Score=30.39  Aligned_cols=30  Identities=30%  Similarity=0.691  Sum_probs=24.9

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+ .....+.|++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            55677889999999999865 4678899997

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=6.9e-05  Score=34.58  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             ecCCCeEEEEeeEee-ecCC---eEEEEeCCCcEE
Q psy4606          23 APEGGTIKLVCKAKG-YPRP---HITWKREDGQEI   53 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g-~P~P---~~~W~~~~~~~~   53 (69)
                      ...+..+.|.|.+.| +|..   .++|.+ ++...
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~-~~~~~   59 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFV-DNVEV   59 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBS-SSCCB
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECc-CCeEc
Confidence            345788999999999 6764   456877 55443

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.89  E-value=0.0016  Score=29.51  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+.....+.|++
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYr   36 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYK   36 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEE
Confidence            556677899999999988777777899997

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.89  E-value=0.0014  Score=29.60  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.........+.|++.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQH   37 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEEC
Confidence            5567788999999999887666667999983

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.89  E-value=0.0014  Score=29.64  Aligned_cols=31  Identities=26%  Similarity=0.538  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.....-...+.|++.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEec
Confidence            5667788999999999987655678999983

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.88  E-value=0.0014  Score=29.81  Aligned_cols=31  Identities=29%  Similarity=0.541  Sum_probs=25.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.........+.|++.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQE   38 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEc
Confidence            5567778999999999987766778999973

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.86  E-value=0.0016  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.-...+.|++.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ   38 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEc
Confidence            5667788999999999987765667999983

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0024  Score=28.03  Aligned_cols=30  Identities=23%  Similarity=0.591  Sum_probs=24.5

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      +.+.+|++++|.|.........+.|++.+.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~   33 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQ   33 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTC
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCC
Confidence            567789999999998777777899998543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.84  E-value=0.0013  Score=29.66  Aligned_cols=30  Identities=10%  Similarity=0.378  Sum_probs=24.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      |..+.+.+|+.++|.|...+.....+.|++
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYr   37 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQ   37 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            556777899999999988766666799997

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.83  E-value=0.0016  Score=29.41  Aligned_cols=30  Identities=17%  Similarity=0.405  Sum_probs=24.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|.....-...+.|++
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQ   37 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEe
Confidence            556778899999999997665566799997

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.82  E-value=0.0017  Score=29.42  Aligned_cols=31  Identities=19%  Similarity=0.447  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.........+.|++.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq   38 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            5566778899999999987776777999973

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00085  Score=30.62  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      |....+..|+.++|.|...+ .....+.|++.
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            55667889999999999876 44567899983

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.79  E-value=0.0018  Score=29.17  Aligned_cols=31  Identities=16%  Similarity=0.491  Sum_probs=25.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.....-...+.|++.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq   38 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEe
Confidence            5567788999999999886666678999974

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00096  Score=29.92  Aligned_cols=26  Identities=23%  Similarity=0.541  Sum_probs=19.2

Q ss_pred             CCCeEEEEeeEee-ecCC---eEEEEeCCC
Q psy4606          25 EGGTIKLVCKAKG-YPRP---HITWKREDG   50 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P---~~~W~~~~~   50 (69)
                      .+..++|.|.+.| +|.-   .+.|.++++
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~   44 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASG   44 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTC
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCc
Confidence            4677899999999 6752   667887443

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=0.0017  Score=29.23  Aligned_cols=29  Identities=17%  Similarity=0.501  Sum_probs=24.3

Q ss_pred             eEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .+.+.+|+.++|.|...+.-...+.|++.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq   37 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEec
Confidence            46778999999999998766778999973

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0027  Score=28.90  Aligned_cols=30  Identities=17%  Similarity=0.436  Sum_probs=24.6

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~   47 (69)
                      |..+.+.+|+.++|.|...+ .....+.|++
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            66778889999999999865 4456789997

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.74  E-value=0.004  Score=28.25  Aligned_cols=30  Identities=13%  Similarity=0.416  Sum_probs=24.6

Q ss_pred             CceEEecCCCeEEEEeeEee--ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG--YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~   47 (69)
                      +..+...+|+.++|.|...+  .....+.|++
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyr   38 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYR   38 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceee
Confidence            66778889999999999876  3556789997

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.74  E-value=0.0021  Score=29.00  Aligned_cols=31  Identities=23%  Similarity=0.482  Sum_probs=25.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.........+.|++.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEe
Confidence            5567778999999999887666778899973

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.74  E-value=0.0025  Score=28.72  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=25.4

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+.-...+.|++.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq   37 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQ   37 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEec
Confidence            5667788999999999887655667999973

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.72  E-value=0.0023  Score=29.06  Aligned_cols=30  Identities=23%  Similarity=0.509  Sum_probs=25.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|.......+.+.|++
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            556778899999999998776678889997

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.68  E-value=0.0025  Score=28.90  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=25.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|.........+.|++.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ   38 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQ   38 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeec
Confidence            5667778999999999987666677999983

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.68  E-value=0.0013  Score=29.57  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+.-...+.|++
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   35 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQ   35 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEe
Confidence            556777899999999988765455789997

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.66  E-value=0.0026  Score=28.72  Aligned_cols=31  Identities=19%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.-...+.|++.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   40 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQ   40 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeee
Confidence            4556778899999999987765677899973

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.64  E-value=0.0028  Score=28.61  Aligned_cols=31  Identities=13%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.....-...+.|++.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ   37 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQ   37 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEc
Confidence            5667788999999999877655677999983

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.61  E-value=0.003  Score=28.60  Aligned_cols=31  Identities=19%  Similarity=0.408  Sum_probs=24.2

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+. ....+.|++.
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            455777899999999998763 3566999983

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.56  E-value=0.0034  Score=28.39  Aligned_cols=31  Identities=23%  Similarity=0.534  Sum_probs=24.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+.-...+.|++.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            5566778899999999887655678999984

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.54  E-value=0.0036  Score=28.49  Aligned_cols=30  Identities=17%  Similarity=0.492  Sum_probs=24.3

Q ss_pred             CceEEecCCCeEEEEeeEee--ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG--YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~   47 (69)
                      +..+....|..++|.|...+  .....+.|++
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYr   37 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYR   37 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEE
Confidence            55677789999999998865  3567899997

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00069  Score=30.42  Aligned_cols=25  Identities=36%  Similarity=0.914  Sum_probs=19.7

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCC
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDG   50 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~   50 (69)
                      .+..+.|.|.+.| +|.. .++|.+ ++
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~-~~   45 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNS-GA   45 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGG-GT
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECc-CC
Confidence            3678999999999 7765 689976 44

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.49  E-value=0.0031  Score=28.54  Aligned_cols=31  Identities=16%  Similarity=0.308  Sum_probs=24.5

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.... .....+.|++.
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ   37 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   37 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEe
Confidence            56678889999999998754 55667899973

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.48  E-value=0.0013  Score=29.50  Aligned_cols=30  Identities=20%  Similarity=0.543  Sum_probs=24.5

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ..+.+.+|+.++|.|.........+.|++.
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ   35 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQ   35 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            357788999999999887666677899973

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.42  E-value=0.0052  Score=27.75  Aligned_cols=30  Identities=17%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|.... .....+.|++
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            56677889999999998654 4556788997

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.39  E-value=0.0061  Score=27.43  Aligned_cols=30  Identities=20%  Similarity=0.522  Sum_probs=24.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+ -...+.|++.
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ   37 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQ   37 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEE
Confidence            56677889999999998754 3568999983

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0032  Score=28.12  Aligned_cols=29  Identities=21%  Similarity=0.676  Sum_probs=20.4

Q ss_pred             CCCeEEEEeeEee-ecCC--eEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKG-YPRP--HITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P--~~~W~~~~~~~~~   54 (69)
                      .++.+.|.|.+.| +|.-  .+.|.+ ++..+.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~-~~~~~~   49 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDIT   49 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESC-CCSSCE
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEcc-CCCcCc
Confidence            4678999999999 5764  356766 665443

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.31  E-value=0.0016  Score=29.45  Aligned_cols=31  Identities=16%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.........+.|++.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq   38 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQ   38 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEc
Confidence            4556677899999999987766677999973

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.31  E-value=0.0025  Score=28.80  Aligned_cols=31  Identities=19%  Similarity=0.409  Sum_probs=23.9

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+ .....+.|++.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq   36 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQ   36 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEE
Confidence            34577889999999998765 44567899973

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.004  Score=27.76  Aligned_cols=25  Identities=28%  Similarity=0.864  Sum_probs=20.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEeCCC
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKREDG   50 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~   50 (69)
                      .++.+.|.|.+.| +|.. .+.|.+ ++
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~-~~   45 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNE-GA   45 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGG-GT
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEec-CC
Confidence            5789999999999 7754 689976 44

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.14  E-value=0.0078  Score=27.61  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=23.9

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      +..+.+..|+.++|.|...|..  ...+.|++
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            4556778999999999988643  46799997

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0054  Score=27.36  Aligned_cols=23  Identities=39%  Similarity=1.048  Sum_probs=17.1

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEe
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKR   47 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~   47 (69)
                      .++.+.|.|.+.| +|.. .+.|..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~   43 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNS   43 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECc
Confidence            4678999999999 7765 689965

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.02  E-value=0.0032  Score=28.44  Aligned_cols=31  Identities=13%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.  ..-.+.|++.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            445778899999999998763  3345899973

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.94  E-value=0.014  Score=26.33  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             eEEecCCCeEEEEeeEeee---cCCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGY---PRPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~---P~P~~~W~~~   48 (69)
                      .+.+..|+++.|.|...+.   ....+.|++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~   42 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRS   42 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeec
Confidence            3667789999999987542   2346899984

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.94  E-value=0.015  Score=26.79  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      +..+...+|..++|.|.+.|..  ...+.|++.
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            3456677899999999998853  456889973

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.93  E-value=0.0083  Score=26.89  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             CceEEecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY-PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~-P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+. ....+.|++.
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            566778899999999987653 4557889973

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.83  E-value=0.0033  Score=28.53  Aligned_cols=30  Identities=13%  Similarity=0.467  Sum_probs=23.7

Q ss_pred             ceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      ..+.+.+|+.++|.|.........+.|++.
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ   37 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQ   37 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeec
Confidence            357788999999999976655567899973

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0034  Score=28.94  Aligned_cols=31  Identities=23%  Similarity=0.429  Sum_probs=24.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+..|+.++|.|...+.-...+.|++.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ   38 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQ   38 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeee
Confidence            4556678899999999887655567899983

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.75  E-value=0.014  Score=26.39  Aligned_cols=31  Identities=10%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             CceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.-     ...+.|++.
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            5567778899999999987631     356899973

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.74  E-value=0.0066  Score=27.71  Aligned_cols=29  Identities=10%  Similarity=0.398  Sum_probs=23.6

Q ss_pred             eEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      .+.+.+|+.++|.|.+.+.  ....+.|++.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ   39 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQ   39 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEEC
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceee
Confidence            5778899999999998763  4577999974

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.73  E-value=0.017  Score=26.06  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=23.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+ -...+.|++.
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ   37 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQ   37 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEe
Confidence            55677789999999998765 3457899983

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.64  E-value=0.0021  Score=29.19  Aligned_cols=25  Identities=24%  Similarity=0.692  Sum_probs=19.4

Q ss_pred             CCCeEEEEeeEee-ecC-CeEEEEeCCC
Q psy4606          25 EGGTIKLVCKAKG-YPR-PHITWKREDG   50 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~-P~~~W~~~~~   50 (69)
                      .+..+.|.|.+.| +|. -.+.|.+ ++
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~-~~   52 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDS-SE   52 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSS-CC
T ss_pred             cCCceEEEEEEEeeECCCcEEEEee-CC
Confidence            3567899999999 775 4789987 44

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.60  E-value=0.015  Score=26.18  Aligned_cols=30  Identities=20%  Similarity=0.527  Sum_probs=23.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|... .....+.|++.
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ   35 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQ   35 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEee
Confidence            5567788999999999975 34568999973

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.58  E-value=0.012  Score=26.49  Aligned_cols=30  Identities=23%  Similarity=0.492  Sum_probs=23.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+ -...+.|++.
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ   35 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRR   35 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEE
Confidence            55667889999999998654 3468999973

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.50  E-value=0.019  Score=25.92  Aligned_cols=31  Identities=13%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             CceEEecCCCeEEEEeeEee-ec---CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YP---RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P---~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+ ..   .-.+.|++.
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            55677789999999998754 22   234889973

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.026  Score=24.83  Aligned_cols=39  Identities=18%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      +|.+...  +. ..+..|.+++|.|.......-.+.|+| +|.
T Consensus         5 kP~Lsa~--P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k-~g~   43 (96)
T d1ucta2           5 KPFLSAD--RG-LVLMPGENISLTCSSAHIPFDRFSLAK-EGE   43 (96)
T ss_dssp             CCEEEES--SC-SEECTTCCCEEEEECSSSCCSEEEEEE-TTC
T ss_pred             CCEEEEe--CC-CccCCCCeEEEEEeCCCCCceEEEEEE-CCc
Confidence            4666655  33 357789999999986333445788998 553

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.31  E-value=0.0044  Score=27.99  Aligned_cols=31  Identities=23%  Similarity=0.527  Sum_probs=23.7

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|.........+.|++.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ   36 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQ   36 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEec
Confidence            3456778899999999875555567899973

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.26  E-value=0.02  Score=25.65  Aligned_cols=29  Identities=14%  Similarity=0.471  Sum_probs=22.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+ -...+.|++
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYr   34 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQ   34 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEE
Confidence            55567789999999998654 346789998

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.22  E-value=0.014  Score=25.49  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.1

Q ss_pred             CCeEEEEeeEeeecCCeEEEEe
Q psy4606          26 GGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        26 g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      |+.++|.|.........+.|++
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEE
Confidence            6789999998877778899997

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.20  E-value=0.012  Score=26.57  Aligned_cols=30  Identities=20%  Similarity=0.533  Sum_probs=23.2

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+...+|+.++|.|.... -...+.|++.
T Consensus         8 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ   37 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQ   37 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCT-TCCEEEEEEB
T ss_pred             CCEEEEeCCCCEEEEEEeCC-CCCEEEEEEE
Confidence            55667789999999998654 2467999984

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.19  E-value=0.022  Score=26.08  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=23.6

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      +..+...+|+.++|.|...+.  -...+.|++.
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ   40 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEe
Confidence            345667789999999998764  3567899973

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.16  E-value=0.02  Score=25.72  Aligned_cols=30  Identities=13%  Similarity=0.493  Sum_probs=23.3

Q ss_pred             ceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      ..+.+.+|+.++|.|...+.  ....+.|++.
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            35788899999999988653  3456999973

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.14  E-value=0.022  Score=25.59  Aligned_cols=30  Identities=13%  Similarity=0.434  Sum_probs=23.5

Q ss_pred             CceEEecCCCeEEEEeeEeee---cCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY---PRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~---P~P~~~W~~   47 (69)
                      +..+.+.+|+.++|.|...+.   ....+.|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYr   39 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQ   39 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeee
Confidence            456788899999999998763   234689997

>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0014  Score=27.46  Aligned_cols=23  Identities=35%  Similarity=0.928  Sum_probs=12.2

Q ss_pred             CCCeEEEEeeEee-ecCC-eEEEEe
Q psy4606          25 EGGTIKLVCKAKG-YPRP-HITWKR   47 (69)
Q Consensus        25 ~g~~~~l~C~~~g-~P~P-~~~W~~   47 (69)
                      ..+.++|.|.+.| .|.. .+.|..
T Consensus        19 ~~~~vtl~CL~~gF~P~~i~v~W~~   43 (68)
T d2j88h1          19 TNSMVTLGCLVKGYFPEPVTVTWNS   43 (68)
T ss_dssp             --------CEEEEEBSSCCCCCSCC
T ss_pred             CCCeEEEEEEEeceECCCcEEEECC
Confidence            4678999999999 7877 688944

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.11  E-value=0.025  Score=25.56  Aligned_cols=31  Identities=16%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|...+..     ...+.|++.
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            5567788999999999876532     245889973

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=95.08  E-value=0.017  Score=26.06  Aligned_cols=31  Identities=16%  Similarity=0.520  Sum_probs=22.5

Q ss_pred             CceEEecCCCeEEEEeeEeee---c---CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY---P---RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~---P---~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+.   .   ...+.|++.
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            556777899999999987641   1   234889973

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.018  Score=25.22  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +|.+...  +.. .+..|.+++|.|.+. .+.-.+.|+|
T Consensus         7 kPsLsa~--P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k   41 (99)
T d1ucta1           7 MPFISAK--SSP-VIPLDGSVKIQCQAI-REAYLTQLMI   41 (99)
T ss_dssp             CCCEEES--SCS-EEETTCCEEEEECCC-TTCSEEEEEE
T ss_pred             CCEEEec--CCC-ceeCCCeEEEEEcCC-CCCcEEEEEE
Confidence            4666555  433 466899999999864 4556788888

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.05  E-value=0.022  Score=25.62  Aligned_cols=31  Identities=13%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             CceEEecCCCeEEEEeeEee-e---cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-Y---PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~---P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|.... .   -...+.|++.
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            45566778999999998743 2   2334899973

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.03  E-value=0.043  Score=24.55  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |....+.+|+.++|.|.... -...+.|++.
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ   35 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQ   35 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEeccc
Confidence            55567788999999998753 3567999973

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.007  Score=26.67  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=23.6

Q ss_pred             ceEEecCCCeEEEEeeEee--ecCCeEEEEeCCCcEE
Q psy4606          19 SDIMAPEGGTIKLVCKAKG--YPRPHITWKREDGQEI   53 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~~~~~~~   53 (69)
                      ..+.+..|++++|.|....  .....+.|++ ++..+
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~-~~~~i   38 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWER-GSTLV   38 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEE-TTEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeec-cccce
Confidence            3456778999999996433  2335799999 55544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.88  E-value=0.034  Score=24.91  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+...+|+.++|.|... .-...+.|++.
T Consensus         7 P~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ   36 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQD-MDHENMFWYRQ   36 (113)
T ss_dssp             CSEEEEETTCCEEECEEES-SCCSEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEc-CCccEEEeEEe
Confidence            5556778899999999763 23467899973

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.82  E-value=0.025  Score=25.59  Aligned_cols=29  Identities=17%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +..+.+.+|..++|.|...+. ...+.|++
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   35 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYR   35 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEe
Confidence            556778899999999998663 34789997

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.054  Score=23.58  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE   52 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~   52 (69)
                      +|.+...  +.. .+..|.+|+|.|.+. .+.-.+.|+| +|..
T Consensus         4 KPsLsa~--P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k-~g~~   42 (95)
T d1olla1           4 KPFIWAE--PHF-MVPKEKQVTICCQGN-YGAVEYQLHF-EGSL   42 (95)
T ss_dssp             CCEEEEE--SCS-EEETTCCEEEEEECC-TTCCEEEEEE-TTEE
T ss_pred             CCEEEee--CCC-cccCCCcEEEEEecC-CCccEEEEEE-CCCC
Confidence            4666655  433 456899999999863 3456788888 5643

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.029  Score=24.96  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             eEEecCCCeEEEEeeEeeecCC----eEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRP----HITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P----~~~W~~   47 (69)
                      .+.+.+|+++.|.|...+.+.+    .+.|++
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~   44 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLI   44 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEE
Confidence            3567789999999998765432    478986

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.65  E-value=0.05  Score=24.52  Aligned_cols=31  Identities=10%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             CceEEecCCCeEEEEeeEeeec-----CCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYP-----RPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P-----~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+..     ...+.|++.
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            5567788999999999976532     256899973

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.60  E-value=0.045  Score=24.45  Aligned_cols=30  Identities=17%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +..+.+.+|+.++|.|...+ ....+.|++.
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ   35 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQ   35 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeee
Confidence            55566789999999998643 3467999983

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.59  E-value=0.028  Score=25.34  Aligned_cols=29  Identities=21%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             eEEecCCCeEEEEeeEeeec-C--CeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYP-R--PHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P-~--P~~~W~~~   48 (69)
                      .+.+.+|+.++|.|...+.. .  -.+.|++.
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ   40 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEe
Confidence            46778999999999987532 2  23889973

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.00035  Score=31.36  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=19.7

Q ss_pred             cCCCeEEEEeeEeee--cCC-eEEEEeCC
Q psy4606          24 PEGGTIKLVCKAKGY--PRP-HITWKRED   49 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~--P~P-~~~W~~~~   49 (69)
                      ..+..+.|.|.+.|+  |.. .++|.+++
T Consensus        16 ~~~~~~tL~C~v~~f~~p~~i~v~W~~~~   44 (101)
T d1ow0a1          16 LLGSEANLTCTLTGLRDASGVTFTWTPSS   44 (101)
T ss_dssp             HHCSSCCCEEEETTCCSCCCCCCCBSSCS
T ss_pred             ccCCCeEEEEEEeCCCCCcceEEEEEECC
Confidence            457889999999995  443 68998833

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.49  E-value=0.04  Score=24.48  Aligned_cols=30  Identities=17%  Similarity=0.402  Sum_probs=22.1

Q ss_pred             CceEEecCCCeEEEEeeEee----ecCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG----YPRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g----~P~P~~~W~~   47 (69)
                      +..+.+..|+.++|.|....    .....+.|++
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~   39 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY   39 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEE
Confidence            55567788999999998643    2234789986

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.48  E-value=0.044  Score=24.24  Aligned_cols=30  Identities=17%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|.... ....+.|++.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ   36 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQ   36 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEe
Confidence            55677889999999998644 3445789973

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.42  E-value=0.026  Score=25.19  Aligned_cols=25  Identities=12%  Similarity=0.275  Sum_probs=18.8

Q ss_pred             ecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606          23 APEGGTIKLVCKAKGYPRPHITWKR   47 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~P~~~W~~   47 (69)
                      +.+|+++.|.|.........+.|+|
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k   35 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYK   35 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEe
Confidence            4589999999974333356889998

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.06  Score=23.74  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~   47 (69)
                      ++.+.+.+|+.++|.|.....  ....+.|++
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r   34 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCK   34 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence            445678899999999986542  235678987

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.081  Score=23.77  Aligned_cols=30  Identities=20%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             ceEEecCCCeEEEEeeEeeecCC---eEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRP---HITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P---~~~W~~~   48 (69)
                      ..+.+.+|+.++|.|.....-.+   .+.|++.
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ   39 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQ   39 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEE
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEE
Confidence            34556789999999997543223   5889983

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.23  E-value=0.058  Score=24.88  Aligned_cols=31  Identities=23%  Similarity=0.625  Sum_probs=22.9

Q ss_pred             EecCCCeEEEEeeEeeecCC---eEEEEeC-CCcE
Q psy4606          22 MAPEGGTIKLVCKAKGYPRP---HITWKRE-DGQE   52 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P---~~~W~~~-~~~~   52 (69)
                      .++.|+.+.|.|.+.|....   .+.|++. .|+.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkg   45 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNK   45 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTE
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcc
Confidence            45679999999999997653   3679873 3443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.035  Score=24.70  Aligned_cols=33  Identities=24%  Similarity=0.613  Sum_probs=23.7

Q ss_pred             ecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606          23 APEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG   58 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~   58 (69)
                      ...|..|.|.|...+.  -.+.|.+ ++..++...+
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkk-n~~~i~g~~~   43 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEK-NGQELPQKHD   43 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEE-TTEEECSCCC
T ss_pred             EEeCCEEEEECCCCCC--CceEEee-ccccCCCCCC
Confidence            3469999999986543  4699998 7767664433

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.029  Score=25.11  Aligned_cols=28  Identities=18%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             eEEecCCCeEEEEeeEee--ecCCeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKG--YPRPHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g--~P~P~~~W~~   47 (69)
                      ...+.+|+.++|.|...+  .....+.|++
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyr   37 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQI   37 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEE
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEE
Confidence            356778999999998765  3456788997

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.89  E-value=0.042  Score=25.35  Aligned_cols=27  Identities=22%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             EecCCCeEEEEeeEeeec----CCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGYP----RPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P----~P~~~W~~~   48 (69)
                      .+..|+.++|.|.+.|..    ...+.|++.
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ   41 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQ   41 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccc
Confidence            356799999999998843    246889973

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.11  Score=23.24  Aligned_cols=30  Identities=20%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             ceEEecCCCeEEEEeeEeee-cCC--eEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGY-PRP--HITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~-P~P--~~~W~~~   48 (69)
                      ..+.+..|+.+.|.|..... -..  .+.|++.
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ   39 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQ   39 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEE
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEe
Confidence            34556689999999997542 223  3779983

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.48  E-value=0.042  Score=24.55  Aligned_cols=30  Identities=17%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|.... -...+.|++.
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ   34 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQ   34 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEE
Confidence            55567789999999998643 2467899983

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.37  E-value=0.12  Score=22.59  Aligned_cols=37  Identities=16%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG   50 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~   50 (69)
                      +|.+...  +. ..+..|.+++|.|+.. .+.-.+.|+| +|
T Consensus         6 kPsLsa~--P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k-~g   42 (99)
T d1nkra2           6 KPSLSAQ--PG-PTVLAGENVTLSCSSR-SSYDMYHLSR-EG   42 (99)
T ss_dssp             CCEEEEE--SC-SEECTTCEEEEEEEES-SCCSEEEEEE-TT
T ss_pred             CCEEEEe--CC-CcccCCCeEEEEECCC-CCccEEEEEE-CC
Confidence            5666665  33 3567899999999753 3556788888 44

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.16  E-value=0.071  Score=24.97  Aligned_cols=26  Identities=23%  Similarity=0.565  Sum_probs=20.4

Q ss_pred             EecCCCeEEEEeeEeeecC----CeEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPR----PHITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~----P~~~W~~   47 (69)
                      .++.|+.++|.|.+.|...    ..+.|++
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyR   40 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIR   40 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEE
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEE
Confidence            4677999999999998542    2588987

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.98  E-value=0.11  Score=23.85  Aligned_cols=28  Identities=32%  Similarity=0.726  Sum_probs=21.5

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|....  .+.|++.
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ   38 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRR   38 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeee
Confidence            346789999999999996543  4679873

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.15  Score=22.18  Aligned_cols=38  Identities=16%  Similarity=0.358  Sum_probs=25.1

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      +|.+...  +. ..+..|.+++|.|.+. .+.-.+..+| +|.
T Consensus         4 kP~Lsa~--Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~k-eg~   41 (96)
T d1ugna1           4 KPTLWAE--PG-SVITQGSPVTLRCQGG-QETQEYRLYR-EKK   41 (96)
T ss_dssp             CCEEEEE--SC-SEEETTCCEEEEEECC-TTCCCEEEEE-SSS
T ss_pred             CCEEEeE--CC-CccCCCCcEEEEEeCC-CCCCEEEEEE-CCC
Confidence            4555554  33 3467899999999963 4455677778 453

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.65  E-value=0.097  Score=24.26  Aligned_cols=28  Identities=32%  Similarity=0.665  Sum_probs=21.8

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      -.++.|+.+.|.|.+.|....  .+.|++.
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQ   38 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCccccccccccccc
Confidence            346789999999999995543  6789873

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.12  Score=23.20  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CceEEecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      .+...+.+|+.++|.|...|.  ..-.+.|.+.
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq   34 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRL   34 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEEC
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEE
Confidence            345678899999999998763  4567889983

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.16  Score=21.69  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             cCCCeEEEEeeEeeecCC--eEEEEeCCCcEEEec
Q psy4606          24 PEGGTIKLVCKAKGYPRP--HITWKREDGQEIIIK   56 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~~   56 (69)
                      ..|..+.|.|.....+.+  --.|+| +|+.+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K-~gkvl~ed   43 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKED   43 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEES-SSEEEECT
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEee-CCEEcccc
Confidence            458899999999875543  457999 88888654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.51  E-value=0.16  Score=23.19  Aligned_cols=27  Identities=33%  Similarity=0.801  Sum_probs=20.9

Q ss_pred             EecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGY--PRPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~--P~P~~~W~~~   48 (69)
                      .+..|+.++|.|.+.|.  ..-.+.|++.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ   39 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQ   39 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEE
Confidence            46679999999999984  3446889873

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.48  E-value=0.088  Score=24.07  Aligned_cols=28  Identities=32%  Similarity=0.762  Sum_probs=21.6

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+..|+.+.|.|.+.|..  .-.+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ   39 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQ   39 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEECccCccCCceecccc
Confidence            3467899999999999854  346789873

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.45  E-value=0.19  Score=23.06  Aligned_cols=28  Identities=29%  Similarity=0.762  Sum_probs=21.5

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+..|+.++|.|.+.|..  .-.+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ   39 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQ   39 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeee
Confidence            3467799999999999854  346789873

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=92.20  E-value=0.24  Score=23.01  Aligned_cols=31  Identities=23%  Similarity=0.532  Sum_probs=23.0

Q ss_pred             EecCCCeEEEEeeEeeecC---CeEEEEeC-CCcE
Q psy4606          22 MAPEGGTIKLVCKAKGYPR---PHITWKRE-DGQE   52 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~---P~~~W~~~-~~~~   52 (69)
                      .++.|+.+.|.|.+.|...   -.+.|++. .|+.
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkg   45 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNK   45 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTE
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcc
Confidence            4577999999999999654   25789873 3444

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.08  E-value=0.007  Score=26.70  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +.+.+|+.++|.|...+ ....+.|++.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ   29 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQ   29 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEE
Confidence            45778999999998754 2357899973

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.05  E-value=0.25  Score=22.73  Aligned_cols=30  Identities=27%  Similarity=0.743  Sum_probs=22.2

Q ss_pred             EecCCCeEEEEeeEeeecC--CeEEEEeC-CCc
Q psy4606          22 MAPEGGTIKLVCKAKGYPR--PHITWKRE-DGQ   51 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~--P~~~W~~~-~~~   51 (69)
                      .++.|+.+.|.|.+.|...  =.+.|++. .|+
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGk   43 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEK   43 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTT
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCc
Confidence            4567999999999998543  45789873 344

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.05  E-value=0.13  Score=23.83  Aligned_cols=26  Identities=23%  Similarity=0.639  Sum_probs=19.7

Q ss_pred             EecCCCeEEEEeeEeeecC--C--eEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPR--P--HITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~--P--~~~W~~   47 (69)
                      .+..|+.++|.|.+.|...  .  .+.|++
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~R   40 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIR   40 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccc
Confidence            4567999999999998532  2  467987

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.92  E-value=0.22  Score=22.87  Aligned_cols=28  Identities=25%  Similarity=0.675  Sum_probs=21.8

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|...-  .+.|++.
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQ   39 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccee
Confidence            456789999999999996543  5789873

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.87  E-value=0.12  Score=23.47  Aligned_cols=29  Identities=28%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             eEEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ...++.|+.+.|.|.+.|...  =.+.|++.
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ   39 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQ   39 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCccccccccccee
Confidence            345678999999999998543  36789873

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.83  E-value=0.1  Score=24.02  Aligned_cols=27  Identities=33%  Similarity=0.785  Sum_probs=21.2

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|....  .+.|++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvR   38 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVR   38 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeee
Confidence            456789999999999996543  578886

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.76  E-value=0.27  Score=22.51  Aligned_cols=29  Identities=31%  Similarity=0.795  Sum_probs=21.7

Q ss_pred             eEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ......|..+.|.|.+.|.-  .-.+.|++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ   39 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQ   39 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeee
Confidence            34567799999999999843  346778873

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.71  E-value=0.1  Score=24.10  Aligned_cols=27  Identities=26%  Similarity=0.754  Sum_probs=21.0

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|....  .+.|++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvR   38 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVR   38 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccc
Confidence            346679999999999995433  578986

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.68  E-value=0.12  Score=23.72  Aligned_cols=28  Identities=32%  Similarity=0.704  Sum_probs=21.6

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|..  .-.+.|++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQ   39 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecccc
Confidence            4467899999999999854  346889873

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.23  Score=21.50  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=25.3

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      +|.+...  +. ..+..|.+++|.|... .+.-.+.++|+
T Consensus         4 kPsLsa~--P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Ke   39 (93)
T d1olla2           4 TPTLSVH--PG-PEVISGEKVTFYCRLD-TATSMFLLLKE   39 (93)
T ss_dssp             CCEEEEE--SC-SEEETTCEEEEEEECS-SSCSEEEEEEE
T ss_pred             CCEEEEe--CC-CcccCCCcEEEEECCC-CCCCEEEEEEC
Confidence            5666665  33 3466899999999863 35567888883

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.59  E-value=0.24  Score=21.67  Aligned_cols=36  Identities=31%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~   53 (69)
                      .+...+..|+...|.|.+.= .-.|.++|-|-+|...
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~c   46 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIW   46 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSE
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEE
Confidence            44556778999999999865 6789999998666544

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.45  E-value=0.13  Score=23.00  Aligned_cols=23  Identities=39%  Similarity=0.907  Sum_probs=18.2

Q ss_pred             CCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          25 EGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      .|+.++|.|.+.|....  .+.|++
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvR   25 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVK   25 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEE
Confidence            47899999999996543  578987

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.43  E-value=0.089  Score=23.78  Aligned_cols=26  Identities=31%  Similarity=0.671  Sum_probs=18.8

Q ss_pred             ecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          23 APEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ++.|+.++|.|.+.|.-  .-.+.|++.
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ   32 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQ   32 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEe
Confidence            46799999999999843  345789873

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.33  E-value=0.21  Score=22.82  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|....  .+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQ   39 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceE
Confidence            345679999999999995543  5789873

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.32  E-value=0.16  Score=23.29  Aligned_cols=28  Identities=25%  Similarity=0.674  Sum_probs=21.6

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..+..|+.++|.|.+.|...  =.+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ   39 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQ   39 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccC
Confidence            34678999999999999654  35789873

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.07  E-value=0.27  Score=22.91  Aligned_cols=28  Identities=25%  Similarity=0.523  Sum_probs=21.5

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|...  =.+.|++.
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQ   38 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEE
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEe
Confidence            44678999999999999543  35789873

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.06  E-value=0.24  Score=22.84  Aligned_cols=28  Identities=32%  Similarity=0.736  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|...  -.+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQ   39 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccC
Confidence            34678999999999998543  45789873

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.95  E-value=0.21  Score=22.91  Aligned_cols=27  Identities=33%  Similarity=0.796  Sum_probs=21.2

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      .....|..+.|.|.+.|....  .+.|++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVR   38 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeee
Confidence            345679999999999995544  578987

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.86  E-value=0.2  Score=22.94  Aligned_cols=28  Identities=29%  Similarity=0.732  Sum_probs=21.6

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|..  .=.+.|.+.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQ   39 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccee
Confidence            4567799999999999954  346788873

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.84  E-value=0.25  Score=22.82  Aligned_cols=27  Identities=30%  Similarity=0.676  Sum_probs=21.2

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ..++.|..+.|.|.+.|...  =.+.|++
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~R   38 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVR   38 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccce
Confidence            45678999999999999553  3578887

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.83  E-value=0.35  Score=22.10  Aligned_cols=30  Identities=27%  Similarity=0.729  Sum_probs=22.8

Q ss_pred             ceEEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          19 SDIMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        19 ~~~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ....++.|+.++|.|.+.|....  .+.|++.
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ   38 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQ   38 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCcccee
Confidence            33456789999999999996543  5789873

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.80  E-value=0.35  Score=22.08  Aligned_cols=30  Identities=33%  Similarity=0.687  Sum_probs=22.9

Q ss_pred             CceEEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      +....++.|+.+.|.|.+.|...  -.+.|.+
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeee
Confidence            44456778999999999999543  4578887

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=90.75  E-value=0.23  Score=22.83  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=21.3

Q ss_pred             EecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      .++.|+.+.|.|.+.|....  .+.|++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ   39 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQ   39 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEE
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeE
Confidence            46779999999999996544  5779873

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.68  E-value=0.18  Score=23.20  Aligned_cols=28  Identities=36%  Similarity=0.680  Sum_probs=21.5

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      .....|+.+.|.|.+.|...  =.+.|++.
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcccc
Confidence            34577999999999999543  36789873

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.66  E-value=0.37  Score=22.12  Aligned_cols=29  Identities=24%  Similarity=0.671  Sum_probs=22.0

Q ss_pred             eEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ...+..|+.++|.|.+.|..  .-.+.|++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ   39 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQ   39 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeE
Confidence            34567899999999998843  346789873

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.13  Score=22.69  Aligned_cols=31  Identities=16%  Similarity=0.419  Sum_probs=22.6

Q ss_pred             CceEEecCCCeEEEEeeEee-e--cCCeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-Y--PRPHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-~--P~P~~~W~~~   48 (69)
                      |..+.+.+|+.++|.|.-.+ .  ..-.+.|++.
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~   39 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ   39 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEc
Confidence            66788889999999998643 2  2345779873

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.28  Score=21.75  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CceEEecCCCeEEEEeeEee----ecC---CeEEEEeC
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG----YPR---PHITWKRE   48 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g----~P~---P~~~W~~~   48 (69)
                      +..+.+.+|+.+.|.|....    ...   -.+.|++.
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~   45 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRA   45 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEEC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEe
Confidence            45677889999999998742    111   24678873

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.39  E-value=0.19  Score=23.33  Aligned_cols=28  Identities=32%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..++.|+.++|.|.+.|..  .=.+.|++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ   39 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQ   39 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeee
Confidence            3456799999999999854  346789873

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.05  E-value=0.23  Score=23.03  Aligned_cols=28  Identities=21%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|....  .+.|++.
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ   38 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQ   38 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeee
Confidence            456789999999999995443  5789873

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.04  E-value=0.4  Score=21.98  Aligned_cols=27  Identities=33%  Similarity=0.760  Sum_probs=21.3

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|...  =.+.|++
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVK   38 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccce
Confidence            44678999999999999643  3578987

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.03  E-value=0.21  Score=23.17  Aligned_cols=28  Identities=21%  Similarity=0.596  Sum_probs=21.1

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..+..|+.+.|.|.+.|.-  .-.+.|++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRR   39 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCcccc
Confidence            3456799999999999843  346789873

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.02  E-value=0.21  Score=23.32  Aligned_cols=28  Identities=29%  Similarity=0.738  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..++.|+.++|.|.+.|...  -.+.|++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ   39 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQ   39 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCCCcCCccccccc
Confidence            34678999999999998443  46788873

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.00  E-value=0.33  Score=22.40  Aligned_cols=26  Identities=23%  Similarity=0.597  Sum_probs=19.4

Q ss_pred             EecCCCeEEEEeeEeeecC--C--eEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPR--P--HITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~--P--~~~W~~   47 (69)
                      .++.|+.++|.|.+.|.-.  .  .+.|++
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~R   40 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIR   40 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEe
Confidence            4567999999999998432  2  457986

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.84  E-value=0.33  Score=22.37  Aligned_cols=28  Identities=32%  Similarity=0.676  Sum_probs=21.9

Q ss_pred             eEEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ...++.|+.+.|.|.+.|...  =.+.|++
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvR   39 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVR   39 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeE
Confidence            345678999999999998653  3578987

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.83  E-value=0.47  Score=21.97  Aligned_cols=28  Identities=29%  Similarity=0.666  Sum_probs=21.6

Q ss_pred             eEEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ....+.|+.+.|.|.+.|...-  .+.|++
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCccee
Confidence            3456789999999999996543  467887

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=89.76  E-value=0.26  Score=22.65  Aligned_cols=28  Identities=18%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             EEecCCCeEEEEeeEeeecC--C--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--P--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P--~~~W~~~   48 (69)
                      ..+..|+.++|.|.+.|...  .  .+.|++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ   41 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQ   41 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccC
Confidence            34667999999999999543  2  4679873

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=89.67  E-value=0.34  Score=22.17  Aligned_cols=27  Identities=30%  Similarity=0.837  Sum_probs=21.0

Q ss_pred             EecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      .++.|+.+.|.|.+.|....  .+.|++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ   39 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEE
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccC
Confidence            45679999999999996543  5778873

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=89.65  E-value=0.33  Score=22.17  Aligned_cols=28  Identities=14%  Similarity=0.568  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..+..|+.+.|.|.+.|...-  .+.|++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQ   39 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceE
Confidence            346779999999999995543  5778873

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.64  E-value=0.24  Score=22.65  Aligned_cols=27  Identities=30%  Similarity=0.703  Sum_probs=20.7

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      .....|..+.|.|.+.|...  =.+.|++
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~R   38 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVR   38 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            34567999999999998543  3578887

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.54  E-value=0.22  Score=22.82  Aligned_cols=27  Identities=33%  Similarity=0.826  Sum_probs=20.5

Q ss_pred             EecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          22 MAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      .+..|+.++|.|.+.|..  .-.+.|++.
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ   39 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQ   39 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEE
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeee
Confidence            456799999999998853  235789873

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.31  E-value=0.26  Score=22.87  Aligned_cols=26  Identities=23%  Similarity=0.670  Sum_probs=20.1

Q ss_pred             EecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      ..+.|+.+.|.|.+.|.-  .-.+.|++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVR   38 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeee
Confidence            456799999999999843  34577886

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.25  E-value=0.26  Score=22.73  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=20.9

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ..+..|..+.|.|.+.|.-..  .+.|++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeece
Confidence            456789999999999995433  467887

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.47  Score=21.10  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CceEEecCCCeEEEEeeEee-------ecCCeEEEEeCCCcEEEecCCcEEEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAKG-------YPRPHITWKREDGQEIIIKEGNTMVP   63 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g-------~P~P~~~W~~~~~~~~~~~~~~~~~~   63 (69)
                      +....+..|+.++..|...-       .-.+.+.|.. +++.++. ..+..++
T Consensus        10 p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl-~~~~~P~-~qy~~ln   60 (100)
T d1i1ra1          10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTIPK-EQYTIIN   60 (100)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEE-TTEECCG-GGCEEEE
T ss_pred             cCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEE-CCEECCc-hheEccC
Confidence            44556778999999999963       1347899998 7877664 3344444

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.13  E-value=0.27  Score=22.77  Aligned_cols=28  Identities=25%  Similarity=0.628  Sum_probs=21.3

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|...  -.+.|++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQ   39 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccccCCcceecee
Confidence            34677999999999998543  46788873

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.93  E-value=0.32  Score=22.64  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=21.7

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~~   48 (69)
                      ..++.|+.++|.|.+.|..  .-.+.|++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQ   39 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEcccc
Confidence            4467899999999999854  346889873

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.47  Score=20.58  Aligned_cols=38  Identities=18%  Similarity=0.427  Sum_probs=23.8

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCc
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ   51 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~   51 (69)
                      .|.+...  +. ..+..|.+++|.|... ...-.+..+| +|.
T Consensus         4 kPsLsa~--P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k-~g~   41 (98)
T d1ugna2           4 KPTLSAQ--PS-PVVNSGGNVTLQCDSQ-VAFDGFILCK-EGE   41 (98)
T ss_dssp             CCEEEEE--SC-SEEETTCCEEEEEECS-SCCSEEEEEE-C--
T ss_pred             CCEEEee--CC-CccCCCCcEEEEeCCC-CCCCEEEEEE-CCC
Confidence            4566555  33 2467899999999863 3445667777 443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.70  E-value=0.56  Score=21.72  Aligned_cols=28  Identities=32%  Similarity=0.640  Sum_probs=21.5

Q ss_pred             eEEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ...++.|+.+.|.|.+.|...  =.+.|++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            345677999999999999543  3578887

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=88.70  E-value=0.38  Score=22.56  Aligned_cols=27  Identities=30%  Similarity=0.791  Sum_probs=20.9

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|...  -.+.|++
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvR   38 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVR   38 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccc
Confidence            34678999999999999543  3578986

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.56  E-value=0.39  Score=22.06  Aligned_cols=28  Identities=36%  Similarity=0.751  Sum_probs=21.5

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEeC
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKRE   48 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~~   48 (69)
                      ..++.|+.+.|.|.+.|....  .+.|.+.
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ   39 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQ   39 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceE
Confidence            456789999999999985443  5788873

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.48  E-value=0.15  Score=23.38  Aligned_cols=25  Identities=24%  Similarity=0.630  Sum_probs=19.9

Q ss_pred             ecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          23 APEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        23 ~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ++.|+.++|.|.+.|...  =.+.|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvR   38 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGFSLTSFSVSWVR   38 (116)
T ss_dssp             CCTTSEECCEEECCSSCTTSSEEEEEE
T ss_pred             ECCCCCeEEEEEEeCcccccCccceee
Confidence            567999999999999544  3577987

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.47  E-value=0.42  Score=22.35  Aligned_cols=27  Identities=26%  Similarity=0.604  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ..+..|..+.|.|.+.|...-  .+.|++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVR   37 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccce
Confidence            346789999999999995443  467876

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.39  Score=20.93  Aligned_cols=28  Identities=32%  Similarity=0.711  Sum_probs=20.6

Q ss_pred             cCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..|..|.|.|.-  .....+.|.+ ++..+.
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~-n~~~~~   35 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQH-NDKNIG   35 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEE-TTEEES
T ss_pred             EeCCEEEEECCC--CCCCceeeee-cccccc
Confidence            358999999953  3557899998 555544

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.49  Score=20.22  Aligned_cols=26  Identities=38%  Similarity=0.724  Sum_probs=19.3

Q ss_pred             CCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          25 EGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      ..+.+.|.|.   .....++|.+ ++..+.
T Consensus        16 ~dg~V~L~Cn---~~~k~i~W~k-dg~~i~   41 (81)
T d1sy6a1          16 EDGSVLLTCD---AEAKNITWFK-DGKMIG   41 (81)
T ss_dssp             SSSEEEEEEC---SCSSEEEEEE-TTEEEE
T ss_pred             cCCeEEEEeC---CCCcEEEEec-CCeEee
Confidence            4678999995   3455899999 776543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.03  E-value=0.46  Score=22.02  Aligned_cols=26  Identities=27%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      .++.|+.+.|.|.+.|.-.  =.+.|.+
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvR   38 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVR   38 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEE
Confidence            4567999999999999543  3578886

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=87.80  E-value=0.56  Score=20.31  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606           9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE   48 (69)
Q Consensus         9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~   48 (69)
                      .|.+...  + ...+..|.+++|.|... ...-.+.++|+
T Consensus         2 KPsLsa~--P-~~~V~~G~~VTl~C~~~-~~~~~f~L~ke   37 (96)
T d1nkra1           2 KPSLLAH--P-GPLVKSEETVILQCWSD-VMFEHFLLHRE   37 (96)
T ss_dssp             CCEEEEE--S-CSEEETTCCEEEEEEES-SCCSEEEEEEE
T ss_pred             CCEEEee--C-CCccCCCCcEEEEECCC-CCCCEEEEEEC
Confidence            4555555  3 23567899999999853 34567788883

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=87.38  E-value=0.42  Score=22.00  Aligned_cols=27  Identities=33%  Similarity=0.650  Sum_probs=20.9

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|...  =.+.|++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvR   38 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVR   38 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccc
Confidence            34567999999999999653  3578887

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.42  Score=20.64  Aligned_cols=27  Identities=30%  Similarity=0.612  Sum_probs=19.8

Q ss_pred             cCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606          24 PEGGTIKLVCKAKGYPRPHITWKREDGQEII   54 (69)
Q Consensus        24 ~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~   54 (69)
                      .+.+.|.|.|..   ....++|.+ ++..+.
T Consensus        20 ~~dGsV~L~Cn~---~~k~i~W~k-dg~~i~   46 (86)
T d1jbja1          20 RGDGSVLLTCGL---TDKTIKWLK-DGSIIS   46 (86)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEE-TTEECC
T ss_pred             ccCCeEEEEeCC---CCcEEEEec-CCceec
Confidence            356789999954   345899999 776653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.26  E-value=0.75  Score=21.18  Aligned_cols=28  Identities=32%  Similarity=0.745  Sum_probs=21.2

Q ss_pred             eEEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ...++.|..++|.|.+.|...  =.+.|++
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            345677999999999998543  3577876

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.10  E-value=0.44  Score=21.87  Aligned_cols=26  Identities=31%  Similarity=0.850  Sum_probs=20.1

Q ss_pred             EecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      .+..|+.+.|.|.+.|.-  .=.+.|++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~R   38 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFR   38 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcce
Confidence            457799999999999854  23578886

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=87.00  E-value=0.45  Score=21.93  Aligned_cols=26  Identities=35%  Similarity=0.844  Sum_probs=20.4

Q ss_pred             EecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          22 MAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        22 ~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      .+..|+.+.|.|.+.|...  =.+.|++
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvR   38 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVR   38 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeee
Confidence            4567999999999998553  3578887

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.76  E-value=0.81  Score=21.08  Aligned_cols=27  Identities=33%  Similarity=0.663  Sum_probs=21.2

Q ss_pred             EEecCCCeEEEEeeEeeecC--CeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPR--PHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~--P~~~W~~   47 (69)
                      ...+.|+.+.|.|.+.|...  =.+.|.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   38 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLK   38 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccce
Confidence            44678999999999999544  3578887

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=86.22  E-value=0.85  Score=20.80  Aligned_cols=29  Identities=28%  Similarity=0.755  Sum_probs=21.8

Q ss_pred             eEEecCCCeEEEEeeEeeecC--CeEEEEeC
Q psy4606          20 DIMAPEGGTIKLVCKAKGYPR--PHITWKRE   48 (69)
Q Consensus        20 ~~~~~~g~~~~l~C~~~g~P~--P~~~W~~~   48 (69)
                      ...++.|+.+.|.|.+.|...  =.+.|.+.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQ   39 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEE
Confidence            345677999999999999543  36788873

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.57  E-value=0.33  Score=22.22  Aligned_cols=27  Identities=33%  Similarity=0.684  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEeeEeeec--CCeEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYP--RPHITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P--~P~~~W~~   47 (69)
                      ..+..|+.+.|.|.+.|.-  .=.+.|++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvR   38 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVK   38 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEE
T ss_pred             ceECCCCCEEEEEEECCCCCcCCcccccc
Confidence            3567899999999999854  33567887

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=85.31  E-value=0.55  Score=21.79  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606          21 IMAPEGGTIKLVCKAKGYPRP--HITWKR   47 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g~P~P--~~~W~~   47 (69)
                      ..++.|+.+.|.|.+.|...-  .+.|++
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvR   38 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVR   38 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccce
Confidence            346789999999999996544  467876

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.82  Score=19.69  Aligned_cols=17  Identities=29%  Similarity=0.258  Sum_probs=14.1

Q ss_pred             EEecCCCeEEEEeeEee
Q psy4606          21 IMAPEGGTIKLVCKAKG   37 (69)
Q Consensus        21 ~~~~~g~~~~l~C~~~g   37 (69)
                      +.+..|+++.|.|....
T Consensus         4 V~a~~G~tv~L~C~~~~   20 (110)
T d1ncna_           4 IQAYFNETADLPCQFAN   20 (110)
T ss_dssp             EEEETTSCEEEECCCCC
T ss_pred             EEEEeCCcEEEEEEEeC
Confidence            56778999999998864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.87  Score=19.81  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=23.5

Q ss_pred             CceEEecCCCeEEEEeeEeeecCCeEE-EEeCCCcEE
Q psy4606          18 SSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQEI   53 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~-W~~~~~~~~   53 (69)
                      +..+.+.+|+.+.+.|.++ .|.-.++ |.. ++..+
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~-~~~~~   46 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKF-PLDTL   46 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEET-TTEEE
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEec-cCCcc
Confidence            4457788999999999986 5666654 554 44333

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.08  E-value=1.4  Score=18.74  Aligned_cols=19  Identities=11%  Similarity=0.328  Sum_probs=15.5

Q ss_pred             CceEEecCCCeEEEEeeEe
Q psy4606          18 SSDIMAPEGGTIKLVCKAK   36 (69)
Q Consensus        18 ~~~~~~~~g~~~~l~C~~~   36 (69)
                      |..+.+.+|+.+.|.|...
T Consensus         7 P~~v~~~~G~~V~l~C~f~   25 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFS   25 (118)
T ss_dssp             CSEEEEETTSCEEECCEEE
T ss_pred             CCEEEEecCCcEEEEEEEe
Confidence            4556778999999999864