Psyllid ID: psy4609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MFWVGSEEDEEEQNLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
ccccccccHHHHHHHHccHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEcccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHHccccc
cEEEcccccHHHHHHHHcHHHHHHHcccccccEEEccccccccccccccccHcccHcHcccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEccHHHccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHcHccc
mfwvgseedeeeqnllfspalmsrranhpnihTLVHhrldyrphpsrqifgYGAALWVFNMITLSKKLKmqnegcdivdkssnkrifiRDKLLIKEVQEMEQnlpntcktkftnpnhlheftivispdegywrggkflfsvsvpeeynmappkvkcltklwhpninengDICLSLLRQnsidglgwaptrkLKDVIWGLNSLFtdllnfddpLNIEAAEMYQKNKELFRERARCLEFGEGII
mfwvgseedeeeQNLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEgcdivdkssnkrifIRDKLLIKEVQEMEQNLPntcktkftnpnHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
MFWVGSEEDEEEQNLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
****************************PNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF*****
*FW*****************LMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMI******************************LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
*************NLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
*FW**SEEDEEEQNLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALW*FNMITLSK*********************IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFWVGSEEDEEEQNLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
Q5U203185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.625 2e-62
Q9CY34185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.625 2e-62
Q969M7185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.619 8e-62
Q1RMW1185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.607 2e-61
Q5ZKX6185 NEDD8-conjugating enzyme yes N/A 0.706 0.924 0.621 1e-60
Q6IRC7185 NEDD8-conjugating enzyme N/A N/A 0.710 0.929 0.602 9e-60
Q3UWQ3185 NEDD8-conjugating enzyme no N/A 0.710 0.929 0.602 4e-59
Q6NY82185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.629 6e-59
Q5M8Y2185 NEDD8-conjugating enzyme yes N/A 0.710 0.929 0.590 1e-57
Q9XVK5180 NEDD8-conjugating enzyme yes N/A 0.698 0.938 0.491 5e-44
>sp|Q5U203|UBE2F_RAT NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2 Back     alignment and function desciption
 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 135/176 (76%), Gaps = 4/176 (2%)

Query: 61  MITLSKKLK----MQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPN 116
           M+TL+ KLK    ++          S +R+ +RDKLL+KEV E+E NLP TCK  F +PN
Sbjct: 1   MLTLASKLKRDDGLKGSRASASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN 60

Query: 117 HLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLL 176
            LH F + +SPDEGY++GGKF F   VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLL
Sbjct: 61  KLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL 120

Query: 177 RQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERA 232
           R++SIDG GWAPTR LKDV+WGLNSLFTDLLNFDDPLNIEAAE + ++KE FR++ 
Sbjct: 121 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKV 176
Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX2, but not RBX1, suggests that the RBX2-UBE2F complex neddylates specific target proteins, such as CUL5.
Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9CY34|UB2FA_MOUSE NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1 Back     alignment and function description
>sp|Q969M7|UBE2F_HUMAN NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1 Back     alignment and function description
>sp|Q1RMW1|UBE2F_BOVIN NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKX6|UBE2F_CHICK NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1 Back     alignment and function description
>sp|Q6IRC7|UBE2F_XENLA NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1 Back     alignment and function description
>sp|Q3UWQ3|UB2FB_MOUSE NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1 Back     alignment and function description
>sp|Q6NY82|UBE2F_DANRE NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1 Back     alignment and function description
>sp|Q5M8Y2|UBE2F_XENTR NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1 Back     alignment and function description
>sp|Q9XVK5|UBC12_CAEEL NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
48095901182 PREDICTED: NEDD8-conjugating enzyme UBE2 0.714 0.950 0.687 5e-67
157131157179 nedd8-conjugating enzyme nce2 [Aedes aeg 0.702 0.949 0.716 2e-66
307213782182 NEDD8-conjugating enzyme UBE2F [Harpegna 0.714 0.950 0.664 2e-66
383849441182 PREDICTED: NEDD8-conjugating enzyme UBE2 0.714 0.950 0.676 5e-66
156543917181 PREDICTED: NEDD8-conjugating enzyme UBE2 0.673 0.900 0.703 7e-66
350418888182 PREDICTED: NEDD8-conjugating enzyme UBE2 0.714 0.950 0.670 1e-65
312370883193 hypothetical protein AND_22929 [Anophele 0.714 0.896 0.668 5e-65
321472349188 hypothetical protein DAPPUDRAFT_301861 [ 0.714 0.920 0.659 2e-64
332020157180 NEDD8-conjugating enzyme UBE2F [Acromyrm 0.706 0.95 0.670 7e-64
307168124180 NEDD8-conjugating enzyme UBE2F [Camponot 0.706 0.95 0.676 9e-64
>gi|48095901|ref|XP_394551.1| PREDICTED: NEDD8-conjugating enzyme UBE2F-like [Apis mellifera] gi|380025026|ref|XP_003696282.1| PREDICTED: NEDD8-conjugating enzyme UBE2F-like [Apis florea] Back     alignment and taxonomy information
 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 146/173 (84%)

Query: 61  MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHE 120
           MITL  KLK  ++  +  +K  NKR+ +RDKLLIKEVQEMEQ LP TC+ KF +P+ LHE
Sbjct: 1   MITLRGKLKKDSDIANSKNKDYNKRVSVRDKLLIKEVQEMEQTLPTTCQVKFHDPHCLHE 60

Query: 121 FTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNS 180
           FT++I PDEGYW GG+F F + +PEEYNMAPPKVKCLTKLWHPNINE+G++CLS+LRQ+S
Sbjct: 61  FTLLIVPDEGYWTGGRFQFQIYIPEEYNMAPPKVKCLTKLWHPNINEDGNVCLSILRQSS 120

Query: 181 IDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
           ID +GWAPTRKLKDV+WGLNSLFTDLLNFDDPLN EAA+++ K+KE FR + +
Sbjct: 121 IDEMGWAPTRKLKDVVWGLNSLFTDLLNFDDPLNREAADLFIKDKESFRSKVK 173

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157131157|ref|XP_001662144.1| nedd8-conjugating enzyme nce2 [Aedes aegypti] gi|108871637|gb|EAT35862.1| AAEL012011-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307213782|gb|EFN89118.1| NEDD8-conjugating enzyme UBE2F [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383849441|ref|XP_003700353.1| PREDICTED: NEDD8-conjugating enzyme UBE2F-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|156543917|ref|XP_001607128.1| PREDICTED: NEDD8-conjugating enzyme UBE2F-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350418888|ref|XP_003492001.1| PREDICTED: NEDD8-conjugating enzyme UBE2F-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|312370883|gb|EFR19189.1| hypothetical protein AND_22929 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|321472349|gb|EFX83319.1| hypothetical protein DAPPUDRAFT_301861 [Daphnia pulex] Back     alignment and taxonomy information
>gi|332020157|gb|EGI60601.1| NEDD8-conjugating enzyme UBE2F [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307168124|gb|EFN61403.1| NEDD8-conjugating enzyme UBE2F [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
RGD|1307608185 Ube2f "ubiquitin-conjugating e 0.706 0.924 0.628 7.3e-59
MGI|MGI:1915171185 Ube2f "ubiquitin-conjugating e 0.706 0.924 0.628 9.3e-59
UNIPROTKB|Q969M7185 UBE2F "NEDD8-conjugating enzym 0.706 0.924 0.628 4e-58
UNIPROTKB|Q5ZKX6185 UBE2F "NEDD8-conjugating enzym 0.706 0.924 0.622 6.6e-58
UNIPROTKB|Q1RMW1185 UBE2F "NEDD8-conjugating enzym 0.706 0.924 0.611 8.4e-58
UNIPROTKB|E2RSI7185 UBE2F "Uncharacterized protein 0.706 0.924 0.617 8.4e-58
UNIPROTKB|I3L574185 LOC100517862 "Uncharacterized 0.706 0.924 0.611 1.4e-57
UNIPROTKB|C9J9P8171 UBE2F "NEDD8-conjugating enzym 0.685 0.970 0.635 3.6e-57
UNIPROTKB|Q5M8Y2185 ube2f "NEDD8-conjugating enzym 0.706 0.924 0.6 5.9e-57
UNIPROTKB|Q6IRC7185 ube2f "NEDD8-conjugating enzym 0.706 0.924 0.605 7.5e-57
RGD|1307608 Ube2f "ubiquitin-conjugating enzyme E2F (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 110/175 (62%), Positives = 135/175 (77%)

Query:    61 MITLSKKLK----MQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPN 116
             M+TL+ KLK    ++          S +R+ +RDKLL+KEV E+E NLP TCK  F +PN
Sbjct:     1 MLTLASKLKRDDGLKGSRASASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN 60

Query:   117 HLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLL 176
              LH F + +SPDEGY++GGKF F   VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLL
Sbjct:    61 KLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL 120

Query:   177 RQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRER 231
             R++SIDG GWAPTR LKDV+WGLNSLFTDLLNFDDPLNIEAAE + ++KE FR++
Sbjct:   121 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDK 175
GO:0005524 "ATP binding" evidence=IEA
GO:0019788 "NEDD8 ligase activity" evidence=ISO;ISS
GO:0045116 "protein neddylation" evidence=IEA;ISO;ISS
MGI|MGI:1915171 Ube2f "ubiquitin-conjugating enzyme E2F (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q969M7 UBE2F "NEDD8-conjugating enzyme UBE2F" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKX6 UBE2F "NEDD8-conjugating enzyme UBE2F" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMW1 UBE2F "NEDD8-conjugating enzyme UBE2F" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSI7 UBE2F "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L574 LOC100517862 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|C9J9P8 UBE2F "NEDD8-conjugating enzyme UBE2F" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M8Y2 ube2f "NEDD8-conjugating enzyme UBE2F" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IRC7 ube2f "NEDD8-conjugating enzyme UBE2F" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZKX6UBE2F_CHICK6, ., 3, ., 2, ., -0.62140.70660.9243yesN/A
Q5M8Y2UBE2F_XENTR6, ., 3, ., 2, ., -0.59090.71070.9297yesN/A
Q9XVK5UBC12_CAEEL6, ., 3, ., 2, ., -0.49150.69830.9388yesN/A
Q9CY34UB2FA_MOUSE6, ., 3, ., 2, ., -0.6250.71070.9297yesN/A
Q1RMW1UBE2F_BOVIN6, ., 3, ., 2, ., -0.60790.71070.9297yesN/A
Q6NY82UBE2F_DANRE6, ., 3, ., 2, ., -0.62920.71070.9297yesN/A
Q969M7UBE2F_HUMAN6, ., 3, ., 2, ., -0.61930.71070.9297yesN/A
Q5U203UBE2F_RAT6, ., 3, ., 2, ., -0.6250.71070.9297yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.19LOW CONFIDENCE prediction!
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
cd00195141 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca 3e-39
smart00212145 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, 7e-39
pfam00179139 pfam00179, UQ_con, Ubiquitin-conjugating enzyme 1e-38
COG5078153 COG5078, COG5078, Ubiquitin-protein ligase [Posttr 6e-38
PLN00172147 PLN00172, PLN00172, ubiquitin conjugating enzyme; 2e-23
PTZ00390152 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; 2e-16
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information 
 Score =  132 bits (334), Expect = 3e-39
 Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 8/144 (5%)

Query: 91  KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEG-YWRGGKFLFSVSVPEEYNM 149
           K L KE+++++++ P+    +    N L E+   I       + GG F   +  PE+Y  
Sbjct: 2   KRLQKELKDLKKDPPSGISAEPVEEN-LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
            PPKV+ +TK++HPN++ENG ICLS+L+ +     GW+P   L+ V+  L SL  +  N 
Sbjct: 61  KPPKVRFVTKIYHPNVDENGKICLSILKTH-----GWSPAYTLRTVLLSLQSLLNE-PNP 114

Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
            DPLN EAA++Y++N+E F+++AR
Sbjct: 115 SDPLNAEAAKLYKENREEFKKKAR 138

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme Back     alignment and domain information
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 100.0
KOG0417|consensus148 100.0
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 100.0
KOG0419|consensus152 100.0
KOG0420|consensus184 100.0
PLN00172147 ubiquitin conjugating enzyme; Provisional 100.0
KOG0425|consensus171 100.0
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 100.0
KOG0426|consensus165 100.0
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 100.0
KOG0424|consensus158 100.0
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 100.0
KOG0418|consensus200 100.0
KOG0421|consensus175 100.0
KOG0422|consensus153 100.0
KOG0416|consensus189 99.97
KOG0423|consensus223 99.96
KOG0427|consensus161 99.93
KOG0894|consensus244 99.92
KOG0429|consensus258 99.87
KOG0428|consensus 314 99.8
KOG0895|consensus1101 99.72
KOG0895|consensus 1101 99.51
KOG0896|consensus138 99.27
KOG0897|consensus122 98.58
PF14461133 Prok-E2_B: Prokaryotic E2 family B 98.39
PF05743121 UEV: UEV domain; InterPro: IPR008883 The N-termina 98.07
KOG2391|consensus 365 97.13
PF08694161 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 96.67
PF14462122 Prok-E2_E: Prokaryotic E2 family E 95.19
smart00591107 RWD domain in RING finger and WD repeat containing 95.17
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 95.15
PF14457162 Prok-E2_A: Prokaryotic E2 family A 94.11
KOG3357|consensus167 91.39
KOG4018|consensus215 85.41
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-46  Score=305.42  Aligned_cols=146  Identities=31%  Similarity=0.627  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609          89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE  167 (242)
Q Consensus        89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~  167 (242)
                      +.+||++|++.|+++++.++++.+.+++|++.|+++| ||.+|||+||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~   85 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP   85 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence            8899999999999999999999766666999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609         168 NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI  241 (242)
Q Consensus       168 ~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~  241 (242)
                      +|+||+++|..      +|+|+++|++||.+|+++|.+ ||++||+|.|||++|++|+++|.++||++++.+.+
T Consensus        86 ~G~vCLdIL~~------~WsP~~~l~sILlsl~slL~~-PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          86 SGNVCLDILKD------RWSPVYTLETILLSLQSLLLS-PNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CCCChhHHHhC------CCCccccHHHHHHHHHHHHcC-CCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            99999999996      899999999999999999999 99999999999999999999999999999997754

>KOG0417|consensus Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>KOG0419|consensus Back     alignment and domain information
>KOG0420|consensus Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>KOG0425|consensus Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>KOG0426|consensus Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>KOG0424|consensus Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0418|consensus Back     alignment and domain information
>KOG0421|consensus Back     alignment and domain information
>KOG0422|consensus Back     alignment and domain information
>KOG0416|consensus Back     alignment and domain information
>KOG0423|consensus Back     alignment and domain information
>KOG0427|consensus Back     alignment and domain information
>KOG0894|consensus Back     alignment and domain information
>KOG0429|consensus Back     alignment and domain information
>KOG0428|consensus Back     alignment and domain information
>KOG0895|consensus Back     alignment and domain information
>KOG0895|consensus Back     alignment and domain information
>KOG0896|consensus Back     alignment and domain information
>KOG0897|consensus Back     alignment and domain information
>PF14461 Prok-E2_B: Prokaryotic E2 family B Back     alignment and domain information
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub) Back     alignment and domain information
>KOG2391|consensus Back     alignment and domain information
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes Back     alignment and domain information
>PF14462 Prok-E2_E: Prokaryotic E2 family E Back     alignment and domain information
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>PF14457 Prok-E2_A: Prokaryotic E2 family A Back     alignment and domain information
>KOG3357|consensus Back     alignment and domain information
>KOG4018|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3fn1_B167 E2-Ring Expansion Of The Nedd8 Cascade Confers Spec 3e-61
2edi_A173 Solution Structure Of The Uq_con Domain From Human 1e-60
1y8x_A160 Structural Basis For Recruitment Of Ubc12 By An E2- 1e-28
2nvu_C180 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 3e-28
1qcq_A148 Ubiquitin Conjugating Enzyme Length = 148 1e-20
2oxq_A152 Structure Of The Ubch5 :chip U-Box Complex Length = 2e-20
1z2u_A150 The 1.1a Crystallographic Structure Of Ubiquitin- C 3e-20
2c4p_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 4e-20
3oj4_A153 Crystal Structure Of The A20 Znf4, Ubiquitin And Ub 4e-20
2yho_B149 The Idol-Ube2d Complex Mediates Sterol-Dependent De 5e-20
4gpr_A151 Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin 5e-20
3l1y_A157 Crystal Structure Of Human Ubc4 E2 Conjugating Enzy 1e-19
3tgd_A152 Crystal Structure Of The Human Ubiquitin-Conjugatin 2e-19
2c4o_B165 Crystal Structure Of Human Ubiquitin-Conjugating En 3e-19
2esk_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil 3e-19
3eb6_B149 Structure Of The Ciap2 Ring Domain Bound To Ubch5b 3e-19
1ur6_A147 Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp 3e-19
2esq_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 4e-19
2ayv_A166 Crystal Structure Of A Putative Ubiquitin-Conjugati 5e-19
2eso_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 6e-19
2esp_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 6e-19
4ap4_B153 Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le 7e-19
1x23_A155 Crystal Structure Of Ubch5c Length = 155 7e-19
4ii2_C163 Crystal Structure Of Ubiquitin Activating Enzyme 1 1e-18
3jvz_A146 E2~ubiquitin-Hect Length = 146 1e-18
3rpg_A149 Bmi1RING1B-Ubch5c Complex Structure Length = 149 1e-18
3l1z_A157 Crystal Structure Of The U-Box Domain Of Human E4b 1e-18
2fuh_A146 Solution Structure Of The Ubch5cUB NON-Covalent Com 2e-18
3a33_A150 Ubch5b~ubiquitin Conjugate Length = 150 4e-18
4ddg_A 399 Crystal Structure Of Human Otub1UBCH5B~UBUB Length 5e-18
2awf_A172 Structure Of Human Ubiquitin-Conjugating Enzyme E2 5e-18
2c4o_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 5e-18
3o2u_A190 S. Cerevisiae Ubc12 Length = 190 1e-17
4auq_A147 Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 1e-17
3ugb_A147 Ubch5c~ubiquitin Conjugate Length = 147 2e-17
1pzv_A164 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 1e-16
3hct_B155 Crystal Structure Of Traf6 In Complex With Ubc13 In 6e-16
4epo_B155 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 6e-16
2aak_A152 Ubiquitin Conjugating Enzyme From Arabidopsis Thali 6e-16
2c2v_B154 Crystal Structure Of The Chip-Ubc13-Uev1a Complex L 6e-16
1j7d_B152 Crystal Structure Of Hmms2-Hubc13 Length = 152 7e-16
3von_C148 Crystalstructure Of The Ubiquitin Protease Length = 7e-16
2pwq_A216 Crystal Structure Of A Putative Ubiquitin Conjugati 1e-15
3e95_A151 Crystal Structure Of The Plasmodium Falciparum Ubiq 3e-15
2r0j_A149 Crystal Structure Of The Putative Ubiquitin Conjuga 3e-15
2kjh_A152 Nmr Based Structural Model Of The Ubch8-Ubiquitin C 3e-15
1wzv_A155 Crystal Structure Of Ubch8 Length = 155 3e-15
1z3d_A157 Protein Crystal Growth Improvement Leading To The 2 5e-15
1q34_A163 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 6e-15
1tte_A215 The Structure Of A Class Ii Ubiquitin-Conjugating E 8e-15
3rz3_A183 Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len 1e-14
2ob4_A180 Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1 1e-14
1fxt_A149 Structure Of A Conjugating Enzyme-Ubiquitin Thioles 2e-14
3k9p_A217 The Crystal Structure Of E2-25k And Ubiquitin Compl 2e-14
3e46_A253 Crystal Structure Of Ubiquitin-Conjugating Enzyme E 2e-14
2bep_A159 Crystal Structure Of Ubiquitin Conjugating Enzyme E 2e-14
1yla_A202 Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington 2e-14
3k9o_A201 The Crystal Structure Of E2-25k And Ubb+1 Complex L 3e-14
1jas_A152 Hsubc2b Length = 152 4e-14
1ayz_A169 Crystal Structure Of The Saccharomyces Cerevisiae U 7e-14
1jat_A155 Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng 9e-14
1jbb_A153 Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 1e-13
3rcz_B163 Rad60 Sld2 Ubc9 Complex Length = 163 1e-13
1y6l_A149 Human Ubiquitin Conjugating Enzyme E2e2 Length = 14 4e-13
3bzh_A194 Crystal Structure Of Human Ubiquitin-Conjugating En 6e-13
2gmi_A152 Mms2UBC13~UBIQUITIN Length = 152 1e-12
2f4z_A193 Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw 1e-12
1c4z_D154 Structure Of E6ap: Insights Into Ubiquitination Pat 3e-12
3sqv_C156 Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L 4e-12
4fh1_A153 S. Cerevisiae Ubc13-N79a Length = 153 6e-12
1zdn_A158 Ubiquitin-Conjugating Enzyme E2s Length = 158 1e-11
2kly_A167 Solution Structure Of Human Ubiquitin Conjugating E 2e-11
3fsh_A168 Crystal Structure Of The Ubiquitin Conjugating Enzy 2e-11
2cyx_A170 Structure Of Human Ubiquitin-Conjugating Enzyme E2 2e-11
3h8k_A164 Crystal Structure Of Ube2g2 Complxed With The G2br 2e-11
2e2c_A156 E2-C, An Ubiquitin Conjugating Enzyme Required For 4e-11
2grp_A161 Crystal Structure Of Human Rangap1-Ubc9-Y87a Length 1e-10
2grn_A161 Crystal Structure Of Human Rangap1-Ubc9 Length = 16 1e-10
1z5s_A158 Crystal Structure Of A Complex Between Ubc9, Sumo-1 1e-10
1kps_A159 Structural Basis For E2-Mediated Sumo Conjugation R 2e-10
1u9a_A160 Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16 2e-10
2o25_C160 Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi 2e-10
3a4s_A163 The Crystal Structure Of The Sld2:ubc9 Complex Leng 2e-10
2gjd_A157 Distinct Functional Domains Of Ubc9 Dictate Cell Su 3e-10
3ong_B159 Crystal Structure Of Uba2ufd-ubc9: Insights Into E1 3e-10
1yh2_A169 Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 3e-10
2gro_A161 Crystal Structure Of Human Rangap1-Ubc9-N85q Length 5e-10
2grr_A161 Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt 7e-10
2onu_A152 Plasmodium Falciparum Ubiquitin Conjugating Enzyme 9e-10
2grq_A161 Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt 1e-09
3uio_A158 Complex Between Human Rangap1-Sumo2, Ubc9 And The I 1e-09
2uyz_A158 Non-Covalent Complex Between Ubc9 And Sumo1 Length 2e-09
2ucz_A165 Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy 5e-09
1yrv_A169 Novel Ubiquitin-Conjugating Enzyme Length = 169 8e-08
2z5d_A179 Human Ubiquitin-Conjugating Enzyme E2 H Length = 17 1e-07
1i7k_A179 Crystal Structure Of Human Mitotic-Specific Ubiquit 2e-07
1yf9_A171 Structural Analysis Of Leishmania Major Ubiquitin C 2e-06
4ds2_A167 Ubiquitin Conjugating Enzyme (Putative) From Trypan 3e-05
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 124/151 (82%)
Query: 82  SNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSV 141
           S +R+ +RDKLL+KEV E+E NLP TCK  F +PN LH F + ++PDEGY++GGKF F  
Sbjct: 8   STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFET 67
Query: 142 SVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNS 201
            VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLLR++SIDG GWAPTR LKDV+WGLNS
Sbjct: 68  EVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNS 127
Query: 202 LFTDLLNFDDPLNIEAAEMYQKNKELFRERA 232
           LFTDLLNFDDPLNIEAAE + ++KE FR + 
Sbjct: 128 LFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173 Back     alignment and structure
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160 Back     alignment and structure
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180 Back     alignment and structure
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148 Back     alignment and structure
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152 Back     alignment and structure
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150 Back     alignment and structure
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165 Back     alignment and structure
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153 Back     alignment and structure
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149 Back     alignment and structure
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151 Back     alignment and structure
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152 Back     alignment and structure
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149 Back     alignment and structure
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149 Back     alignment and structure
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147 Back     alignment and structure
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149 Back     alignment and structure
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166 Back     alignment and structure
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149 Back     alignment and structure
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149 Back     alignment and structure
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153 Back     alignment and structure
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155 Back     alignment and structure
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163 Back     alignment and structure
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146 Back     alignment and structure
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149 Back     alignment and structure
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146 Back     alignment and structure
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150 Back     alignment and structure
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399 Back     alignment and structure
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172 Back     alignment and structure
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190 Back     alignment and structure
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 Back     alignment and structure
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147 Back     alignment and structure
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164 Back     alignment and structure
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155 Back     alignment and structure
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155 Back     alignment and structure
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152 Back     alignment and structure
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154 Back     alignment and structure
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152 Back     alignment and structure
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148 Back     alignment and structure
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216 Back     alignment and structure
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151 Back     alignment and structure
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149 Back     alignment and structure
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152 Back     alignment and structure
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155 Back     alignment and structure
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157 Back     alignment and structure
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163 Back     alignment and structure
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215 Back     alignment and structure
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183 Back     alignment and structure
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180 Back     alignment and structure
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149 Back     alignment and structure
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217 Back     alignment and structure
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253 Back     alignment and structure
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159 Back     alignment and structure
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202 Back     alignment and structure
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201 Back     alignment and structure
>pdb|1JAS|A Chain A, Hsubc2b Length = 152 Back     alignment and structure
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169 Back     alignment and structure
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155 Back     alignment and structure
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 Back     alignment and structure
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163 Back     alignment and structure
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149 Back     alignment and structure
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194 Back     alignment and structure
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152 Back     alignment and structure
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193 Back     alignment and structure
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154 Back     alignment and structure
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156 Back     alignment and structure
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153 Back     alignment and structure
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158 Back     alignment and structure
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167 Back     alignment and structure
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168 Back     alignment and structure
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170 Back     alignment and structure
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164 Back     alignment and structure
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156 Back     alignment and structure
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161 Back     alignment and structure
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161 Back     alignment and structure
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158 Back     alignment and structure
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159 Back     alignment and structure
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163 Back     alignment and structure
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157 Back     alignment and structure
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159 Back     alignment and structure
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 Back     alignment and structure
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161 Back     alignment and structure
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161 Back     alignment and structure
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152 Back     alignment and structure
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161 Back     alignment and structure
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158 Back     alignment and structure
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158 Back     alignment and structure
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165 Back     alignment and structure
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169 Back     alignment and structure
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179 Back     alignment and structure
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179 Back     alignment and structure
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171 Back     alignment and structure
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 1e-67
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 3e-57
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 5e-54
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 1e-52
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 3e-43
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 2e-39
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 2e-38
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 5e-36
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 5e-35
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 9e-35
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 9e-35
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 1e-34
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 2e-34
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 2e-34
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 3e-34
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 5e-34
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 6e-34
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 7e-34
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 7e-34
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 1e-33
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 2e-33
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 6e-33
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 1e-32
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 1e-32
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 2e-32
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 4e-32
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 5e-32
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 9e-32
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 1e-31
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 1e-31
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 2e-31
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 3e-31
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 4e-31
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 1e-30
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 2e-30
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 2e-30
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 3e-30
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 5e-29
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 3e-27
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 5e-27
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 5e-23
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 1e-21
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 2e-21
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 2e-21
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 1e-20
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 1e-20
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 2e-19
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 1e-18
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 2e-17
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 1e-13
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167 Back     alignment and structure
 Score =  204 bits (522), Expect = 1e-67
 Identities = 103/153 (67%), Positives = 124/153 (81%)

Query: 81  SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFS 140
            S +R+ +RDKLL+KEV E+E NLP TCK  F +PN LH F + ++PDEGY++GGKF F 
Sbjct: 7   DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFE 66

Query: 141 VSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLN 200
             VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLLR++SIDG GWAPTR LKDV+WGLN
Sbjct: 67  TEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLN 126

Query: 201 SLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
           SLFTDLLNFDDPLNIEAAE + ++KE FR +  
Sbjct: 127 SLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVD 159
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180 Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190 Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155 Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154 Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167 Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149 Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164 Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215 Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194 Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155 Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166 Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150 Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172 Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165 Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157 Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161 Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163 Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152 Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179 Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159 Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216 Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179 Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253 Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201 Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193 Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171 Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399 Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172 Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138 Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156 Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160 Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136 Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125 Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136 Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323 Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186 Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 100.0
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 100.0
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 100.0
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 100.0
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 100.0
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 100.0
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 100.0
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 100.0
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 100.0
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 100.0
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 100.0
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 100.0
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 100.0
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 100.0
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 100.0
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 100.0
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 100.0
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 100.0
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 100.0
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 100.0
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 100.0
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 100.0
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 100.0
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 100.0
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 100.0
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 100.0
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 100.0
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 100.0
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 100.0
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 100.0
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 100.0
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 100.0
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 100.0
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 100.0
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 100.0
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 100.0
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 100.0
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 100.0
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 100.0
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 100.0
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 100.0
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 100.0
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 100.0
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 100.0
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 100.0
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 100.0
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 100.0
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 100.0
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 100.0
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 100.0
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 99.97
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 99.86
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 99.68
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 99.52
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 99.37
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 95.74
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 95.18
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 94.57
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 94.56
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 94.34
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 90.42
3zqs_A186 E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A 87.41
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 84.7
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
Probab=100.00  E-value=1.1e-46  Score=311.93  Aligned_cols=163  Identities=63%  Similarity=1.116  Sum_probs=153.2

Q ss_pred             CCCccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609          79 DKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT  158 (242)
Q Consensus        79 ~~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t  158 (242)
                      .+.+.++.+.+.+||++|+++|+++++.||++.+++++++++|+++|||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         5 ~~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   84 (167)
T 3fn1_B            5 ASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT   84 (167)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred             cCCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence            34566788999999999999999999999999877888999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609         159 KLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG  238 (242)
Q Consensus       159 ~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~  238 (242)
                      +||||||+.+|.||+++|..++.++++|+|+++|.+||.+|+++|.++|++++|+|.|||++|++|+++|.++||+|++.
T Consensus        85 ~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  164 (167)
T 3fn1_B           85 KIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR  164 (167)
T ss_dssp             CCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999998888889999999999999999999998569999999999999999999999999999998


Q ss_pred             cCC
Q psy4609         239 EGI  241 (242)
Q Consensus       239 ~g~  241 (242)
                      +++
T Consensus       165 ~A~  167 (167)
T 3fn1_B          165 YAR  167 (167)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            764
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Back     alignment and structure
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Back     alignment and structure
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens} Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d1pzva_161 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N 1e-32
d1z2ua1147 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U 3e-31
d1ayza_153 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 8e-31
d1y6la_148 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 9e-31
d1jata_152 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 9e-31
d1z3da1149 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U 2e-30
d1fzya_149 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 2e-29
d1y8xa1157 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, 2e-29
d1j7db_149 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H 3e-29
d1wzva1150 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U 1e-28
d1c4zd_144 d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H 2e-28
d2ucza_164 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 3e-27
d2awfa1125 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U 8e-25
d2bepa1154 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2 2e-24
d1yh2a1154 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U 2e-24
d2uyza1156 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U 6e-23
d1i7ka_146 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 4e-22
d2e2ca_156 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C 1e-21
d2z5da1152 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, 1e-21
d2f4za1161 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca 1e-21
d1zdna1151 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U 2e-21
d1yrva1148 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U 5e-21
d2a4da1139 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, 3e-20
d1yf9a1158 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, 7e-20
d2f4wa1157 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, 2e-17
d2a7la1117 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 4e-17
d2fo3a1109 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating 4e-17
d1jatb_136 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B 3e-15
d1s1qa_141 d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 8e-13
d1uzxa_152 d.20.1.2 (A:) Vacuolar protein sorting-associated 3e-09
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  114 bits (287), Expect = 1e-32
 Identities = 40/151 (26%), Positives = 83/151 (54%), Gaps = 9/151 (5%)

Query: 91  KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
            LL K++ +M +   +       + N ++++ +++  P +  + GG F   +  P +Y  
Sbjct: 3   LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62

Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
            PPK+K ++++WHPNI++ G++C+S+L     D  G       W P   ++ ++  + S+
Sbjct: 63  KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 122

Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
            TD  NF+ P N++AA+M ++N   F+++  
Sbjct: 123 LTD-PNFESPANVDAAKMQRENYAEFKKKVA 152
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152 Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149 Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149 Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150 Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154 Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156 Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161 Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158 Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109 Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136 Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 100.0
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 100.0
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 100.0
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 100.0
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 100.0
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 100.0
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 100.0
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 100.0
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 99.97
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 99.97
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 99.75
d1uzxa_152 Vacuolar protein sorting-associated {Baker's yeast 99.64
d2in1a1162 Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie 96.19
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 95.88
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 93.6
d2daxa1140 Uncharacterized protein C21orf6 {Human (Homo sapie 92.97
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 90.12
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=4e-43  Score=283.13  Aligned_cols=146  Identities=29%  Similarity=0.533  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609          87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI  165 (242)
Q Consensus        87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV  165 (242)
                      +++.|||++|+++|+++++.|+++. ++++|++.|+++| ||++|||+||+|+|.|.||++||++||+|+|.|++|||||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~-~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv   79 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNI   79 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEE-ECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceE
Confidence            4688999999999999999999996 5678899999998 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609         166 NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG  240 (242)
Q Consensus       166 ~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g  240 (242)
                      +.+|.||+++|..      .|+|+++|.+||.+|+++|.+ |++++|+|.+||++|.+|+++|.++||+|++.++
T Consensus        80 ~~~G~iCl~~l~~------~W~p~~~l~~il~~i~~ll~~-p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A  147 (148)
T d1y6la_          80 NSQGVICLDILKD------NWSPALTISKVLLSICSLLTD-CNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  147 (148)
T ss_dssp             CTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEecCC------cCCCcEeHHHHHHHHHHHHhC-CCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999976      899999999999999999998 9999999999999999999999999999998765
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure