Psyllid ID: psy460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdedtvstntsaddktedfcdnptqdTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAeqqtavpldsytRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Flexible Loop (DISEMBL)
mdedtvstntsaddktedfcdnPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Low Complexity Region (SEG)
MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Disordered region (IsUnstruct)
*************************DTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS***QTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFF***
Disordered Region (DISOPRED)
***************************IAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMG*
Disordered Region (DISEMBL)
***************TEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Disordered Region (DISPRO)
****************EDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASxxxxxxxxxxxxxxxxxxxxxQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFMGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q9VQF9	134	SNAPIN protein homolog OS	yes	N/A	0.931	0.813	0.394	4e-16
P60192	136	SNARE-associated protein	yes	N/A	0.717	0.617	0.447	9e-14
Q9Z266	136	SNARE-associated protein	yes	N/A	0.717	0.617	0.447	9e-14
O95295	136	SNARE-associated protein	yes	N/A	0.726	0.625	0.441	1e-13

>sp|Q9VQF9|SNAPN_DROME SNAPIN protein homolog OS=Drosophila melanogaster GN=snapin PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD D  ST TS ++ TE+FC NPT+D +AEG+  L KPT++ LDE+  +T   Q ELR Q
Sbjct: 1   MDSD--STVTSLEENTENFCTNPTRDILAEGITNLFKPTIERLDERVASTIQLQAELRGQ 58

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ---VAMHK 111
           ++AL +QL  I   Q          ++L++ + K++++ N+L T+Q     +HK
Sbjct: 59  LDALAAQLRDIEKAQSQIPEFADKVKELLNVKHKVTVISNVLVTSQERLTGLHK 112

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|P60192|SNAPN_RAT SNARE-associated protein Snapin OS=Rattus norvegicus GN=Snapin PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 23  PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
           PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct: 19  PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78

Query: 82  DSYTRKLVDAQQKISIVGNILQTTQ 106
           D Y +KL++A++++ +V NILQ  Q
Sbjct: 79  DPYVKKLLNARRRVVLVNNILQNAQ 103

May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release through its ability to potentiate the interaction of synaptotagmin with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z266|SNAPN_MOUSE SNARE-associated protein Snapin OS=Mus musculus GN=Snapin PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 23  PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
           PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct: 19  PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78

Query: 82  DSYTRKLVDAQQKISIVGNILQTTQ 106
           D Y +KL++A++++ +V NILQ  Q
Sbjct: 79  DPYVKKLLNARRRVVLVNNILQNAQ 103

May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release through its ability to potentiate the interaction of synaptotagmin with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells.

Mus musculus (taxid: 10090)

>sp|O95295|SNAPN_HUMAN SNARE-associated protein Snapin OS=Homo sapiens GN=SNAPIN PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 22  NPT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVP 80
            PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ 
Sbjct: 18  GPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALD 77

Query: 81  LDSYTRKLVDAQQKISIVGNILQTTQ 106
           LD Y +KL++A++++ +V NILQ  Q
Sbjct: 78  LDPYVKKLLNARRRVVLVNNILQNAQ 103

May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release by potentiating the interaction of synaptotagmins with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
189239210	136	PREDICTED: similar to GA17213-PA [Tribol	0.948	0.816	0.576	5e-30
332374204	132	unknown [Dendroctonus ponderosae]	0.948	0.840	0.567	6e-29
110749189	158	PREDICTED: SNARE-associated protein Snap	0.948	0.702	0.549	2e-28
380019311	159	PREDICTED: SNARE-associated protein Snap	0.948	0.698	0.549	2e-28
307200045	155	SNARE-associated protein Snapin [Harpegn	0.948	0.716	0.558	2e-28
307176347	412	Peroxisomal membrane protein PMP34 [Camp	0.948	0.269	0.558	3e-28
350422832	159	PREDICTED: SNARE-associated protein Snap	0.948	0.698	0.549	3e-28
332026823	154	SNARE-associated protein Snapin [Acromyr	0.948	0.720	0.558	3e-28
340715517	159	PREDICTED: SNARE-associated protein Snap	0.948	0.698	0.549	3e-28
383862279	159	PREDICTED: SNARE-associated protein Snap	0.948	0.698	0.549	3e-28

>gi|189239210|ref|XP_001810642.1| PREDICTED: similar to GA17213-PA [Tribolium castaneum] gi|270009785|gb|EFA06233.1| hypothetical protein TcasGA2_TC009083 [Tribolium castaneum]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 86/111 (77%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD D+ ST TS D+ TE+FCDNPT+DT+AEGL+GLIKPTVD LDE+ RATR SQLEL+  
Sbjct: 1   MDVDSESTGTSIDENTENFCDNPTRDTLAEGLMGLIKPTVDQLDERVRATRISQLELKQC 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE L   L KI+  QQ+ V LD+Y +KL++A+Q+++++ NILQ  Q  ++K
Sbjct: 61  IETLCEDLKKINENQQSTVDLDAYVKKLINAKQRVTVLSNILQNVQDRLNK 111

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374204|gb|AEE62243.1| unknown [Dendroctonus ponderosae]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 86/111 (77%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD D+ ST TS D+ TE+FC+NPT+DTIAEGL+GLIKPTVD LDE+ RATR SQLEL+  
Sbjct: 2   MDVDSESTATSLDENTENFCENPTRDTIAEGLMGLIKPTVDQLDERVRATRVSQLELKQC 61

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           I+ L  +L K+S  QQ  V L+ Y +KL++A+Q++S++ NILQ+ Q  ++K
Sbjct: 62  IDGLAEELKKVSEAQQHTVDLEIYLKKLINAKQRVSVLSNILQSAQDRLNK 112

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110749189|ref|XP_001121556.1| PREDICTED: SNARE-associated protein Snapin [Apis mellifera]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQ+TQ  ++K
Sbjct: 61  IESLTEELQRINEALQCPLETDSYVKKLINAKHKITIVSNILQSTQERLNK 111

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019311|ref|XP_003693553.1| PREDICTED: SNARE-associated protein Snapin-like [Apis florea]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQ+TQ  ++K
Sbjct: 61  IESLTEELQRINEALQCPLETDSYVKKLINAKHKITIVSNILQSTQERLNK 111

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200045|gb|EFN80391.1| SNARE-associated protein Snapin [Harpegnathos saltator]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQTTQ  ++K
Sbjct: 61  IESLTEELQRINEALQYPLDTDSYVKKLINAKHKITIVSNILQTTQERLNK 111

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176347|gb|EFN65958.1| Peroxisomal membrane protein PMP34 [Camponotus floridanus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 259 MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 318

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQTTQ  ++K
Sbjct: 319 IESLTEELQRINDALQYPLETDSYVKKLINAKHKITIVSNILQTTQERLNK 369

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422832|ref|XP_003493298.1| PREDICTED: SNARE-associated protein Snapin-like [Bombus impatiens]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQ+TQ  ++K
Sbjct: 61  IESLTEELQRINEVLQCPLETDSYVKKLINAKHKITIVSNILQSTQERLNK 111

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026823|gb|EGI66932.1| SNARE-associated protein Snapin [Acromyrmex echinatior]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LD++ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDDRIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L KI+   Q  +  DSY +KLV+A+ KI+IV NILQ+TQ  ++K
Sbjct: 61  IESLTEELQKINEALQYPLDTDSYVKKLVNAKHKITIVSNILQSTQECLNK 111

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715517|ref|XP_003396258.1| PREDICTED: SNARE-associated protein Snapin-like [Bombus terrestris]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 84/111 (75%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQ+TQ  ++K
Sbjct: 61  IESLTEELQRINEVLQCPLETDSYVKKLINAKHKITIVSNILQSTQERLNK 111

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862279|ref|XP_003706611.1| PREDICTED: SNARE-associated protein Snapin-like [Megachile rotundata]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 83/111 (74%)

Query: 1   MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
           MD DT S NTS DDK +DFC+NPT+D + EGL+ L+KPTVD LDE+ RATR  Q+EL+ +
Sbjct: 1   MDVDTASDNTSIDDKIDDFCENPTRDALTEGLMSLLKPTVDQLDERIRATRICQIELKQR 60

Query: 61  IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
           IE+LT +L +I+   Q  +  DSY +KL++A+ KI+IV NILQ TQ  ++K
Sbjct: 61  IESLTEELQRINEALQCPLETDSYVKKLINAKHKITIVSNILQNTQERLNK 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
FB|FBgn0031455	134	snapin "snapin" [Drosophila me	0.931	0.813	0.394	1.2e-17
UNIPROTKB|O95295	136	SNAPIN "SNARE-associated prote	0.760	0.654	0.422	2.3e-14
MGI|MGI:1333745	136	Snapin "SNAP-associated protei	0.760	0.654	0.422	2.3e-14
RGD|1560377	136	Snapap "SNAP-associated protei	0.760	0.654	0.422	2.3e-14
UNIPROTKB|A4FUG0	136	SNAPIN "SNAPIN protein" [Bos t	0.743	0.639	0.413	4.9e-14
UNIPROTKB|E2R9T5	136	SNAPIN "Uncharacterized protei	0.743	0.639	0.413	4.9e-14
UNIPROTKB|F1SFV0	136	SNAPIN "Uncharacterized protei	0.743	0.639	0.413	4.9e-14

FB|FBgn0031455 snapin "snapin" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 45/114 (39%), Positives = 70/114 (61%)

Query:     1 MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
             MD D  ST TS ++ TE+FC NPT+D +AEG+  L KPT++ LDE+  +T   Q ELR Q
Sbjct:     1 MDSD--STVTSLEENTENFCTNPTRDILAEGITNLFKPTIERLDERVASTIQLQAELRGQ 58

Query:    61 IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ---VAMHK 111
             ++AL +QL  I   Q          ++L++ + K++++ N+L T+Q     +HK
Sbjct:    59 LDALAAQLRDIEKAQSQIPEFADKVKELLNVKHKVTVISNVLVTSQERLTGLHK 112

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0032844 "regulation of homeostatic process" evidence=IMP

UNIPROTKB|O95295 SNAPIN "SNARE-associated protein Snapin" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/90 (42%), Positives = 60/90 (66%)

Query:    23 PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
             PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct:    19 PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78

Query:    82 DSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
             D Y +KL++A++++ +V NILQ  Q  + +
Sbjct:    79 DPYVKKLLNARRRVVLVNNILQNAQERLRR 108

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IEA

GO:0072553 "terminal button organization" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031083 "BLOC-1 complex" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0032438 "melanosome organization" evidence=NAS

GO:0031175 "neuron projection development" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0000149 "SNARE binding" evidence=IDA

GO:0016079 "synaptic vesicle exocytosis" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:1333745 Snapin "SNAP-associated protein" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/90 (42%), Positives = 60/90 (66%)

Query:    23 PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
             PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct:    19 PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78

Query:    82 DSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
             D Y +KL++A++++ +V NILQ  Q  + +
Sbjct:    79 DPYVKKLLNARRRVVLVNNILQNAQERLRR 108

GO:0000149 "SNARE binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006887 "exocytosis" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=ISO

GO:0016188 "synaptic vesicle maturation" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=ISO;IDA

GO:0031175 "neuron projection development" evidence=NAS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IMP

GO:0043005 "neuron projection" evidence=IEA

GO:0045202 "synapse" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0072553 "terminal button organization" evidence=IMP

RGD|1560377 Snapap "SNAP-associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/90 (42%), Positives = 60/90 (66%)

Query:    23 PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
             PT +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct:    19 PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78

Query:    82 DSYTRKLVDAQQKISIVGNILQTTQVAMHK 111
             D Y +KL++A++++ +V NILQ  Q  + +
Sbjct:    79 DPYVKKLLNARRRVVLVNNILQNAQERLRR 108

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0072553 "terminal button organization" evidence=IEA

UNIPROTKB|A4FUG0 SNAPIN "SNAPIN protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 36/87 (41%), Positives = 58/87 (66%)

Query:    25 QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSY 84
             +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ LD Y
Sbjct:    22 RDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDLDPY 81

Query:    85 TRKLVDAQQKISIVGNILQTTQVAMHK 111
              +KL++A++++ +V NILQ  Q  + +
Sbjct:    82 VKKLLNARRRVVLVNNILQNAQERLRR 108

GO:0072553 "terminal button organization" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

UNIPROTKB|E2R9T5 SNAPIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 36/87 (41%), Positives = 58/87 (66%)

Query:    25 QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSY 84
             +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ LD Y
Sbjct:    22 RDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDLDPY 81

Query:    85 TRKLVDAQQKISIVGNILQTTQVAMHK 111
              +KL++A++++ +V NILQ  Q  + +
Sbjct:    82 VKKLLNARRRVVLVNNILQNAQERLRR 108

GO:0072553 "terminal button organization" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

UNIPROTKB|F1SFV0 SNAPIN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 36/87 (41%), Positives = 58/87 (66%)

Query:    25 QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSY 84
             +D  AEGLL  ++P V  LD    A R SQ+ELR QI+ L ++L +I+ +Q+ A+ LD Y
Sbjct:    22 RDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDLDPY 81

Query:    85 TRKLVDAQQKISIVGNILQTTQVAMHK 111
              +KL++A++++ +V NILQ  Q  + +
Sbjct:    82 VKKLLNARRRVVLVNNILQNAQERLRR 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.339    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  10 23  0.37    31
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  17.91u 0.09s 18.00t   Elapsed:  00:00:23
  Total cpu time:  17.91u 0.09s 18.00t   Elapsed:  00:00:26
  Start:  Thu Aug 15 11:39:24 2013   End:  Thu Aug 15 11:39:50 2013

GO:0072553 "terminal button organization" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VQF9	SNAPN_DROME	No assigned EC number	0.3947	0.9316	0.8134	yes	N/A
P60192	SNAPN_RAT	No assigned EC number	0.4470	0.7179	0.6176	yes	N/A
Q9Z266	SNAPN_MOUSE	No assigned EC number	0.4470	0.7179	0.6176	yes	N/A
O95295	SNAPN_HUMAN	No assigned EC number	0.4418	0.7264	0.625	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	99.9
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	92.15
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	89.57
PHA03386	94	P10 fibrous body protein; Provisional	88.87
KOG2911|consensus	439		88.86
PRK11637	428	AmiB activator; Provisional	88.45
PRK11637	428	AmiB activator; Provisional	85.71
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	84.67
PHA03395	87	p10 fibrous body protein; Provisional	84.05
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	83.34
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	83.2
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	83.07
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	82.93
PRK14011	144	prefoldin subunit alpha; Provisional	82.02
PRK10803	263	tol-pal system protein YbgF; Provisional	81.64
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	81.42
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	81.22

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=99.90  E-value=2.2e-23  Score=142.08  Aligned_cols=90  Identities=34%  Similarity=0.521  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HhcC-CCChhHHHHHHHHhhHHHHHHHHHH
Q psy460           25 QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA-EQQT-AVPLDSYTRKLVDAQQKISIVGNIL  102 (117)
Q Consensus        25 rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e-~q~~-p~dLd~yvkKL~~ak~RV~~vnniL  102 (117)
                      |+.||+||+++|+|.|++++++|++++.||.+|.++|+++.++|+++++ .+.. |+++++|++||.++|+||..+|+++
T Consensus         1 ~~~La~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l   80 (92)
T PF14712_consen    1 REALAEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERL   80 (92)
T ss_pred             ChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998 4334 6788999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy460          103 QTTQVAMHKKFF  114 (117)
Q Consensus       103 q~~Q~RL~rl~~  114 (117)
                      +.+++|+.+|.+
T Consensus        81 ~~lk~R~~~L~q   92 (92)
T PF14712_consen   81 QKLKKRADKLQQ   92 (92)
T ss_pred             HHHHHHHHhhcC
Confidence            999999999863

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=92.15  E-value=3.7  Score=30.44  Aligned_cols=73  Identities=11%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460           35 LIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF  113 (117)
Q Consensus        35 lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~  113 (117)
                      -...+-++||.=-.+.+...++|.++||.|...|++..|.+      ..--.....++..|..++..++.+|..+..|+
T Consensus        44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~------~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le  116 (126)
T PF07889_consen   44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEIS------KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE  116 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34455567777667777788899999999999999998863      33344556666777777777777766665554

The region featured in this family is approximately 100 amino acids long.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=89.57  E-value=2.8  Score=28.76  Aligned_cols=64  Identities=17%  Similarity=0.321  Sum_probs=41.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy460           30 EGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAM  109 (117)
Q Consensus        30 ~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL  109 (117)
                      .-|+.+++-.|+.+|.||-+.+.       +++.|.+          .-+++..--+||-..-.++..+++.+.++|+-|
T Consensus         3 ~NILl~Ir~dIk~vd~KVdaLq~-------~V~~l~~----------~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL   65 (75)
T PF05531_consen    3 QNILLVIRQDIKAVDDKVDALQT-------QVDDLES----------NLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL   65 (75)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34777888888888888764443       4444433          234555556677777777777777777777655


Q ss_pred             H
Q psy460          110 H  110 (117)
Q Consensus       110 ~  110 (117)
                      .
T Consensus        66 ~   66 (75)
T PF05531_consen   66 N   66 (75)
T ss_pred             C
Confidence            3

; GO: 0019028 viral capsid

>PHA03386 P10 fibrous body protein; Provisional

Probab=88.87  E-value=3  Score=29.89  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy460           32 LLGLIKPTVDLLDEKFRATRASQLELRL   59 (117)
Q Consensus        32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~   59 (117)
                      |+.++.-+|+.+|.||-+.+.+=..|++
T Consensus         6 ILl~Ir~dIkavd~KVdaLQ~qV~dv~~   33 (94)
T PHA03386          6 VLTQILDAVQEVDTKVDALQTQLNGLEE   33 (94)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            6788899999999999998886666664

>KOG2911|consensus

Probab=88.86  E-value=3  Score=36.93  Aligned_cols=75  Identities=15%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-----CCh-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460           39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTA-----VPL-DSYTRKLVDAQQKISIVGNILQTTQVAMHKK  112 (117)
Q Consensus        39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p-----~dL-d~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl  112 (117)
                      -|.+.|..|...++++..|..||+.|.+|+.+..+.--+.     =-+ --|.++.--+-+++......|.+++.=|++|
T Consensus       227 ~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~I  306 (439)
T KOG2911|consen  227 IITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQI  306 (439)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999998852111     111 1344444444445555556666666666665


Q ss_pred             h
Q psy460          113 F  113 (117)
Q Consensus       113 ~  113 (117)
                      +
T Consensus       307 d  307 (439)
T KOG2911|consen  307 D  307 (439)
T ss_pred             H
Confidence            4

>PRK11637 AmiB activator; Provisional

Probab=88.45  E-value=14  Score=31.34  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=8.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Q psy460           86 RKLVDAQQKISIVGNILQTTQVA  108 (117)
Q Consensus        86 kKL~~ak~RV~~vnniLq~~Q~R  108 (117)
                      ++|....+.+..++.-+...+..
T Consensus        89 ~~i~~~~~~i~~~~~ei~~l~~e  111 (428)
T PRK11637         89 RKLRETQNTLNQLNKQIDELNAS  111 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PRK11637 AmiB activator; Provisional

Probab=85.71  E-value=12  Score=31.72  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460           42 LLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF  113 (117)
Q Consensus        42 ~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~  113 (117)
                      ++..++...+..-.++...|..+..++..+...      +...-++|....+++..+..-+..++.++.++.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~------l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~  109 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ------LKKQEEAISQASRKLRETQNTLNQLNKQIDELN  109 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444332      444455555555555555555555555555443

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=84.67  E-value=4.2  Score=30.60  Aligned_cols=55  Identities=22%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy460           48 RATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMH  110 (117)
Q Consensus        48 ~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~  110 (117)
                      ...-.-|.+|+.+|.+|.+|+..++. |+   ++..|+|.    +|++.++..-|+..++.+.
T Consensus        36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~-qD---eFAkwaKl----~Rk~~kl~~el~~~~~~~~   90 (161)
T PF04420_consen   36 SKSSKEQRQLRKEILQLKRELNAISA-QD---EFAKWAKL----NRKLDKLEEELEKLNKSLS   90 (161)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTS-T-TT---SHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCCc-HH---HHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            34456678899999999999999965 33   68888873    8888888888887766554

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PHA03395 p10 fibrous body protein; Provisional

Probab=84.05  E-value=7.9  Score=27.36  Aligned_cols=63  Identities=13%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy460           30 EGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAM  109 (117)
Q Consensus        30 ~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL  109 (117)
                      ..|+-+++-.|+.+|.||-+.+.       +++.+.+          .-+|+..--.||..--..+..+++.+.++++-|
T Consensus         3 qNILl~Ir~dIkavd~KVdalQ~-------~V~~l~~----------nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL   65 (87)
T PHA03395          3 QNILLLIRQDIKAVSDKVDALQA-------AVDDVRA----------NLPDVTEINEKLDAQSASLDTISSAVDNITDIL   65 (87)
T ss_pred             chHHHHHHHHHHHHhhHHHHHHH-------HHHHHHh----------cCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence            34778889999999999887665       3333321          333444444444444445566666666666543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.34  E-value=8.3  Score=32.00  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460           38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA   73 (117)
Q Consensus        38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e   73 (117)
                      -=|+.||++|..+...+.++...|+++.++++++..
T Consensus        52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~   87 (265)
T COG3883          52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK   87 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777777888888777777777777777776654

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=83.20  E-value=9.8  Score=24.48  Aligned_cols=63  Identities=13%  Similarity=0.211  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCh-hHHHHHHHHhhHHHHHHHHHHHHH
Q psy460           43 LDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL-DSYTRKLVDAQQKISIVGNILQTT  105 (117)
Q Consensus        43 lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dL-d~yvkKL~~ak~RV~~vnniLq~~  105 (117)
                      ++.-+.-...-...+..+|+++..-|..=++...+|.++ +..-.||.++...+..+...|...
T Consensus         2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L   65 (66)
T PF10458_consen    2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555666666777778888888887655555689987 677888888888888777776654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=83.07  E-value=16  Score=32.42  Aligned_cols=62  Identities=13%  Similarity=0.260  Sum_probs=39.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHH
Q psy460           32 LLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVG   99 (117)
Q Consensus        32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vn   99 (117)
                      -++.+..-++++..++......|.++...+..|..+=.+-.+.      |..|-.+|.+.||+|...|
T Consensus       373 ~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~------l~~~~~~l~~ikR~lek~n  434 (560)
T PF06160_consen  373 PYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREK------LQKLKQKLREIKRRLEKSN  434 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHcC
Confidence            4556666666677777777777777777777776655555553      6666666666666665544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=82.93  E-value=15  Score=31.37  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHh----cCCCChhHHHHHHHHhhHHHH
Q psy460           32 LLGLIKPTVDLLDEKFRATRASQL-----------ELRLQIEALTSQLDKISAEQ----QTAVPLDSYTRKLVDAQQKIS   96 (117)
Q Consensus        32 L~~lL~P~I~~lD~~V~~tr~SQ~-----------eL~~qId~L~~eL~~l~e~q----~~p~dLd~yvkKL~~ak~RV~   96 (117)
                      +..-+.--+.++|+.+..+-..|.           +.+..|..|-+.+..+.+-.    ...-++=.=+++|..||+.++
T Consensus        26 ~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT  105 (383)
T PF04100_consen   26 LIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLT  105 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666677888888887777775           55666777777666665321    224466678999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy460           97 IVGNILQTTQVAM  109 (117)
Q Consensus        97 ~vnniLq~~Q~RL  109 (117)
                      ...++|++.|==+
T Consensus       106 ~SIT~LkrL~MLv  118 (383)
T PF04100_consen  106 QSITTLKRLQMLV  118 (383)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887433

>PRK14011 prefoldin subunit alpha; Provisional

Probab=82.02  E-value=9.9  Score=28.58  Aligned_cols=47  Identities=15%  Similarity=0.298  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHH
Q psy460           36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKL   88 (117)
Q Consensus        36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL   88 (117)
                      +.-+++-|+.++.....+..+|...|+.+..+++++...      |.+.++.+
T Consensus        86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~------L~~k~~~~  132 (144)
T PRK14011         86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE------LEKRAQAI  132 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            566899999999999999999999999999999999875      66666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.64  E-value=7.5  Score=31.35  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460           40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISA   73 (117)
Q Consensus        40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e   73 (117)
                      |.+|+..+..-.++|.+|..||+.|..|+.+|..
T Consensus        42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG   75 (263)
T PRK10803         42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRG   75 (263)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566666666667777777777777777777764

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=81.42  E-value=19  Score=26.64  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HhcCCCChhHHHHHHHHhhHHHHHHHHHHHH
Q psy460           29 AEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA----EQQTAVPLDSYTRKLVDAQQKISIVGNILQT  104 (117)
Q Consensus        29 a~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e----~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~  104 (117)
                      ..|++.|-.=.-+-|..-+.++-.-|..|...|-+...++.++..    .|..--=+..++.|+......+..++.+|..
T Consensus        26 s~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~  105 (131)
T PF10158_consen   26 SRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQ  105 (131)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667766667777777888888999999998888777766654    2333334567778888888888889999998


Q ss_pred             HHHHHHhhhhhc
Q psy460          105 TQVAMHKKFFMG  116 (117)
Q Consensus       105 ~Q~RL~rl~~~~  116 (117)
                      +-.-+++|+-++
T Consensus       106 ~v~~ie~LN~~L  117 (131)
T PF10158_consen  106 TVPSIETLNEIL  117 (131)
T ss_pred             HHHHHHHHHhhC
Confidence            888888888765

The exact function of these proteins is not known.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=81.22  E-value=15  Score=25.21  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHH
Q psy460           39 TVDLLDEKFRATRASQLE---LRLQIEALTSQLDKISA   73 (117)
Q Consensus        39 ~I~~lD~~V~~tr~SQ~e---L~~qId~L~~eL~~l~e   73 (117)
                      =|+.|..+|..++.+...   |...+|.++..|..++.
T Consensus        19 KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~   56 (75)
T PF05531_consen   19 KVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT   56 (75)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence            356677777777776655   77777777777777654

; GO: 0019028 viral capsid

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	94.73
3u0c_A	201	Invasin IPAB, 62 kDa antigen; translocator, type t	92.91
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	87.52
3htk_B	73	Structural maintenance of chromosomes protein 5; S	87.08
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	86.07
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	85.45
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	85.18
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.22

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=94.73  E-value=0.48  Score=30.47  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy460           31 GLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMH  110 (117)
Q Consensus        31 GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~  110 (117)
                      |.|+-++=.-++|+......+....+++..+.+|...+..+... =.-..-..|.......+..+..++..|..+..-|.
T Consensus         1 ~MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~-W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~   79 (98)
T 3gwk_C            1 GAMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDEN-WDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLL   79 (98)
T ss_dssp             CHHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-BCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888889999999999999999999999999999999763 34455688999999999999999999998888776


Q ss_pred             hh
Q psy460          111 KK  112 (117)
Q Consensus       111 rl  112 (117)
                      +.
T Consensus        80 ~~   81 (98)
T 3gwk_C           80 KV   81 (98)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P

Probab=92.91  E-value=0.65  Score=35.76  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=60.9

Q ss_pred             HHHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhHHHhcCCCChhHHHHHHHHhhHHHHHHH
Q psy460           27 TIAEG-LLGLIKP-TVDLLDEKFRATRASQLELRLQIEALTSQL----D-KISAEQQTAVPLDSYTRKLVDAQQKISIVG   99 (117)
Q Consensus        27 ~La~G-L~~lL~P-~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL----~-~l~e~q~~p~dLd~yvkKL~~ak~RV~~vn   99 (117)
                      +|--| |+++++- .+.+|.+++..++ ||.+-++|.   ..|+    . -+.+.|...=+++.-+.++.+++++|-..-
T Consensus        55 TLLLGnL~~IlG~~SlTqL~nrL~~wl-sQ~em~~qk---s~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~le  130 (201)
T 3u0c_A           55 TLLIGNLIQILGEKSLTALTNKITAWK-SQQQARQQK---NLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLE  130 (201)
T ss_dssp             HHHHHHHHHHHCSGGGHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            44444 6677664 4689999998888 998888764   3333    2 222333333346888999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy460          100 NILQTTQVAMHKKF  113 (117)
Q Consensus       100 niLq~~Q~RL~rl~  113 (117)
                      +.+..+|.||+-|+
T Consensus       131 kKvn~aq~kLs~L~  144 (201)
T 3u0c_A          131 NKINQIQTRLSELD  144 (201)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999998765

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=87.52  E-value=0.5  Score=26.73  Aligned_cols=19  Identities=16%  Similarity=0.167  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy460           95 ISIVGNILQTTQVAMHKKF  113 (117)
Q Consensus        95 V~~vnniLq~~Q~RL~rl~  113 (117)
                      |-.+|.+.|..|+|++||.
T Consensus         8 ~r~l~~ivq~lq~r~drle   26 (32)
T 2akf_A            8 VRNLNAIVQKLQERLDRLE   26 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5567889999999999985

>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=87.08  E-value=4.2  Score=25.84  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460           38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK  112 (117)
Q Consensus        38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl  112 (117)
                      +=|++++.++.....+|..+-.++-.....|+.+-+.      +..--=+...+|-|...++.+....-+|..-+
T Consensus         4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~e------l~~~~i~~lE~~N~~~s~~~li~~~~~r~~el   72 (73)
T 3htk_B            4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKE------LISTQILQFEAQNMDVSMNDVIGFFNEREADL   72 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHhhHHhHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999999988888888775      66666678899999999999999999987654

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=86.07  E-value=5.3  Score=26.61  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460           40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISA   73 (117)
Q Consensus        40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e   73 (117)
                      |..|+..+.+-..++.+|..+|+.|..|+.+|..
T Consensus         8 v~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRG   41 (83)
T 2xdj_A            8 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRG   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555566677777777777777776664

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=85.45  E-value=4.9  Score=25.09  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460           36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK  112 (117)
Q Consensus        36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl  112 (117)
                      ++=..++|.......+..-.+++..+.+|...+..|... =.-..=..|.......+..+..++..|..+..-|.+.
T Consensus         4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~   79 (97)
T 2vs0_A            4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN-WEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNST   79 (97)
T ss_dssp             BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334457788888888899999999999999999998763 3444568899999999999999999999998888764

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=85.18  E-value=5.2  Score=25.09  Aligned_cols=80  Identities=11%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy460           32 LLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK  111 (117)
Q Consensus        32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~r  111 (117)
                      +++-++=..++|.......+....+++..+.+|...+..|... =.-..-..|.......+.....++..|..+..-|.+
T Consensus         3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~   81 (99)
T 3zbh_A            3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGI-WEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN   81 (99)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666778889999999999999999999999999998653 233345678888888888888888888888777765


Q ss_pred             h
Q psy460          112 K  112 (117)
Q Consensus       112 l  112 (117)
                      .
T Consensus        82 ~   82 (99)
T 3zbh_A           82 S   82 (99)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.22  E-value=17  Score=27.59  Aligned_cols=56  Identities=23%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHH
Q psy460           37 KPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIV   98 (117)
Q Consensus        37 ~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~v   98 (117)
                      ..-|..++..+...+..-..++..++.+..+++++...      +...-.++-.++.+...+
T Consensus        31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~------i~~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT------LQDTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcc
Confidence            34455555555555555555555555555555555443      555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00