Psyllid ID: psy4652

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEERNMPNVPDFPPSESEEEEEEEEEEEEEDKAIEDELGRI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcHHHHHHccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccEEEEccccccccccccHHHHHHccEEEEEcccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcHHHHHHcHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHccHHEEEccccccccccEEEcccccccccccccccHHHHHHHHHHHHccccccccEEEEcccccEEEcHHHHHHHHHcccEEEEccHHHHccccHHHcccccccccHHEEEEccccccccccccHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccHHHHHHccHHHcccc
Coil and Loop (DISEMBL)
mwdmkhcdpkkcsgrklARHNLIKILKLgerfrgfpkEAKFYLdkfkwgrtFLTLNEELLDLYKACDTVLFIFLMRICltpvgvqcvskadhdiiqengaavvdcswakieetpfnkmktnhprllpfliaanpinygkpcklSCVEALAATFIIAGFPKEAKFYLdkfkwgrtFLTLNEELLDLYKECDTifyedldgerfpkEAKFYLdkfkwgrtFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEeernmpnvpdfppseseeeeeeeeeeEEEDKAIEDELGRI
Flexible Loop (DISEMBL)
mwdmkhcdpkkcsgrklarhNLIKILklgerfrgfPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETpfnkmktnhPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYedldgerfPKEAKFYLDKFKWGRTFLTLNEELLDLykecdtstdvvKVQNEYLKkieeernmpnvpdfppseseeeeeeeeeeeeedkaiedelgri
Low Complexity Region (SEG)
MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEERNMPNVPDFPPseseeeeeeeeeeeeeDKAIEDELGRI
Disordered region (IsUnstruct)
***************KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYL********************************************
Disordered Region (DISOPRED)
MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFP***********************************************************************************ELG**
Disordered Region (DISEMBL)
***********CSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEERNMPNV********************************
Disordered Region (DISPRO)
*WDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFY*****************************************E****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEERNMPNVPDFPPxxxxxxxxxxxxxxxxxxxxxxxLGRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9UJK0	312	Ribosome biogenesis prote	yes	N/A	0.512	0.477	0.450	7e-46
Q5HZH2	323	Ribosome biogenesis prote	yes	N/A	0.505	0.455	0.460	8e-46
Q10409	288	Ribosome biogenesis prote	yes	N/A	0.505	0.510	0.391	1e-38
Q12094	313	Ribosome biogenesis prote	yes	N/A	0.505	0.469	0.417	3e-38
Q2NET3	171	Probable ribosome biogene	yes	N/A	0.508	0.865	0.363	5e-26
A5UJF3	171	Probable ribosome biogene	yes	N/A	0.395	0.672	0.469	4e-24
Q8TXM4	169	Probable ribosome biogene	yes	N/A	0.388	0.668	0.470	9e-24
O26654	169	Probable ribosome biogene	no	N/A	0.395	0.680	0.434	3e-21
Q12ZL9	173	Probable ribosome biogene	yes	N/A	0.501	0.843	0.326	4e-21
Q8PSK5	173	Probable ribosome biogene	yes	N/A	0.487	0.820	0.319	7e-20

>sp|Q9UJK0|TSR3_HUMAN Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 114/191 (59%), Gaps = 42/191 (21%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MW++ HCDP++C+GRKLAR  L++ L+LG RF G                          
Sbjct: 62  MWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGG-------------------------- 95

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + L+PVG Q  S AD  ++ ++G AV+DCSWA+++ETPF KM+ 
Sbjct: 96  ----------------LVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRG 139

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           +H RLLP+L+AANP+NYG+P +LSCVEA AATF I GFP  A   L KFKWG+ FL LN 
Sbjct: 140 SHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNR 199

Query: 181 ELLDLYKECDT 191
           +LLD Y  C +
Sbjct: 200 QLLDKYAACGS 210

Probable pre-rRNA processing protein involved in ribosome biogenesis.
Homo sapiens (taxid: 9606)

>sp|Q5HZH2|TSR3_MOUSE Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=2 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MW++ HCDPK+C+GRKLAR  L++ L+L +RF G                          
Sbjct: 62  MWELGHCDPKRCTGRKLARLGLVRCLRLSQRFGG-------------------------- 95

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + L+PVG + VS AD  ++ ++G AV+DCSWAK+++TPF KM+ 
Sbjct: 96  ----------------LVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRG 139

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           +H RLLP+L+AANP+NYG+PCKLSCVEA AA F I GF   A   L KFKWG+ FL LN 
Sbjct: 140 SHLRLLPYLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNR 199

Query: 181 ELLDLYKEC 189
           ELLD Y  C
Sbjct: 200 ELLDKYAAC 208

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q10409|TSR3_SCHPO Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr3 PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD  HC+P  CSG++L R   ++ L++G++FRG                          
Sbjct: 31  MWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRG-------------------------- 64

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + +TP G   VS AD +     GA+VV+CSWA+IEE PF+++  
Sbjct: 65  ----------------VVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGG 108

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
              RLLP+L+A+NP+NYG+P +L+C EALAA   I G+P EA+  +D FKWG +F  +NE
Sbjct: 109 RCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNE 168

Query: 181 ELLDLYKEC 189
           ELLD+Y +C
Sbjct: 169 ELLDIYAQC 177

Ribosome biogenesis protein required for processing 35S pre-rRNA at site D.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12094|TSR3_YEAST Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 109/189 (57%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD  HCDPK+CSG+KL R  LIK L++G++F+G                          
Sbjct: 50  MWDFDHCDPKRCSGKKLERLGLIKSLRVGQKFQG-------------------------- 83

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           I ++P G   V   D +I++++GA+VV+CSWA++EE PFNK+  
Sbjct: 84  ----------------IVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGG 127

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
            H RLLP+L+AAN +NYG+P +L+CVEALAA F I G    A   L  F WG  FL LN+
Sbjct: 128 KHERLLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNK 187

Query: 181 ELLDLYKEC 189
           ELL++Y++C
Sbjct: 188 ELLEIYQQC 196

Ribosome biogenesis protein required for processing 35S pre-rRNA at site D.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q2NET3|TSR3_METST Probable ribosome biogenesis protein Msp_1293 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_1293 PE=3 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 94/190 (49%), Gaps = 42/190 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           ++    CDPK+C+  KL + N + I       R  P  A                     
Sbjct: 6   IYHSNECDPKRCTSIKLQKQNKVAIT---HNMRKIPYNA--------------------- 41

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFN-KMK 119
                           I L     + VS+ D + I + G + +DCSW K++++ FN K K
Sbjct: 42  ----------------IVLDAEADKAVSREDREKITKYGLSALDCSWKKLKKSSFNFKSK 85

Query: 120 TNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLN 179
            NH RLLPFL+AANP+NYGKPC LS  EAL+A   I G+  EA+  ++ FKWG  F+TLN
Sbjct: 86  KNH-RLLPFLVAANPVNYGKPCILSSAEALSAALYIVGYKDEARDLMNSFKWGPHFITLN 144

Query: 180 EELLDLYKEC 189
           E LL+ Y E 
Sbjct: 145 ENLLEAYSEA 154

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

>sp|A5UJF3|TSR3_METS3 Probable ribosome biogenesis protein Msm_0126 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0126 PE=3 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 69/115 (60%)

Query: 77  ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
           + L P   + VS  D+  +   G   +DCSW ++  +      + + R LPFLIA NP+N
Sbjct: 41  VVLNPFAQKAVSYEDYRYVHRRGVVGLDCSWNEVSSSKKFFSLSKYHRSLPFLIATNPVN 100

Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
           YGKPC LS VEA++AT  I  F  EAK  LD FKWG TFL LN +LL+ Y E DT
Sbjct: 101 YGKPCILSTVEAVSATLYITRFKDEAKDILDGFKWGHTFLELNHDLLEAYSEADT 155

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) (taxid: 420247)

>sp|Q8TXM4|TSR3_METKA Probable ribosome biogenesis protein MK0638 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0638 PE=3 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 77  ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEE--TPFNKMKTNHPRLLPFLIAANP 134
           + L P   + +S+ D D   E G   VDCSW  +     P  + +  H R+LP+LIAANP
Sbjct: 39  VVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRYFGPLRR-RCRH-RILPYLIAANP 96

Query: 135 INYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
           +NYGKPCKLS VEALAA   I GF +EA+ ++ +FKWG  FL LN E L+ Y+  +T
Sbjct: 97  VNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAET 153

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|O26654|TSR3_METTH Probable ribosome biogenesis protein MTH_554 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_554 PE=3 SV=2

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 65/115 (56%)

Query: 77  ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
           + L P   + VS  D D++   G A +DCSW K++++        + R LPFL+AANP N
Sbjct: 41  LVLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKVKKSSVIFQTARNHRSLPFLVAANPTN 100

Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
           YGKPC LS  EA+AAT  I G    A   +  FKWG  FL LN ELL+ Y   + 
Sbjct: 101 YGKPCILSTAEAVAATLYIVGLKDIASDIMSYFKWGPHFLDLNRELLEAYSRAEN 155

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|Q12ZL9|TSR3_METBU Probable ribosome biogenesis protein Mbur_0088 OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_0088 PE=3 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 44/190 (23%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           ++  K CDPKKC+G+K+AR  L +I    ++ +  P+ +                     
Sbjct: 13  IFHAKQCDPKKCTGKKMARFELARIF---DKVQKIPRGS--------------------- 48

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           I L P+  Q +S AD     E    V+DCSW  +EE   + M+ 
Sbjct: 49  ----------------ILLDPMAKQALSPADK---HEQNITVLDCSWETVEEVFPHLMRL 89

Query: 121 N-HPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLN 179
           +   R LP+L+A NP+N+G+P KL+ VEA AA   I G  K+A+  L KF WG  FL +N
Sbjct: 90  HLQHRALPYLVATNPVNFGRPFKLTSVEAFAAALYILGNKKQAEKILSKFNWGHVFLDMN 149

Query: 180 EELLDLYKEC 189
           +E L+ Y + 
Sbjct: 150 KEPLEDYSKA 159

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

>sp|Q8PSK5|TSR3_METMA Probable ribosome biogenesis protein MM_3074 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_3074 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 46/188 (24%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           ++    CDPKKC+GRK+AR  L +   L +R    P+ A                     
Sbjct: 13  IYHAGQCDPKKCTGRKMARFELAR---LYDRISRLPRSA--------------------- 48

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEET--PFNKM 118
                           I L P+  + +S AD     + G  V+DCSW ++E       K+
Sbjct: 49  ----------------ILLDPMAEKALSPADDP---KKGIIVLDCSWEEVERVFPELEKL 89

Query: 119 KTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTL 178
              H R LP+++A NP+N+G+P KL+  EA AA   I G+ ++A+  + KF WG +FL L
Sbjct: 90  NLEH-RALPYMLAGNPVNFGRPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLEL 148

Query: 179 NEELLDLY 186
           N E L+ Y
Sbjct: 149 NREPLEEY 156

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
322802279	265	hypothetical protein SINV_06642 [Solenop	0.704	0.773	0.462	1e-56
307172448	265	UPF0293 protein C16orf42 [Camponotus flo	0.505	0.554	0.560	6e-55
332028977	235	UPF0293 protein C16orf42 [Acromyrmex ech	0.512	0.634	0.554	8e-55
380012742	662	PREDICTED: uncharacterized protein LOC10	0.505	0.222	0.539	4e-54
383864286	264	PREDICTED: probable ribosome biogenesis	0.505	0.556	0.544	7e-54
328788025	267	PREDICTED: UPF0293 protein C16orf42-like	0.505	0.550	0.534	1e-53
242015816	387	conserved hypothetical protein [Pediculu	0.687	0.516	0.427	4e-53
157125951	269	hypothetical protein AaeL_AAEL010333 [Ae	0.512	0.553	0.539	5e-53
357617627	249	hypothetical protein KGM_13042 [Danaus p	0.508	0.594	0.542	1e-52
389614886	250	simila to CG4338, partial [Papilio polyt	0.505	0.588	0.550	1e-52

>gi|322802279|gb|EFZ22675.1| hypothetical protein SINV_06642 [Solenopsis invicta]

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/292 (46%), Positives = 163/292 (55%), Gaps = 87/292 (29%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWDM+HCDP+KCSGRKLARH LIKIL+LG RF G                          
Sbjct: 58  MWDMEHCDPRKCSGRKLARHGLIKILRLGARFPG-------------------------- 91

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           +CLTPVG +CVS  D +I++E G AVVDCSWA++EETPFNKM+T
Sbjct: 92  ----------------LCLTPVGDKCVSPTDCEIVREYGCAVVDCSWARLEETPFNKMRT 135

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
            HPRLLPFL+AANPINYGKPC+LSCVEA+AAT II GFP EAK YL KF WG +FL LN 
Sbjct: 136 PHPRLLPFLVAANPINYGKPCQLSCVEAIAATLIITGFPDEAKLYLGKFSWGHSFLELNS 195

Query: 181 ELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV 240
           ELL+ Y                                              C +S +V+
Sbjct: 196 ELLEKY--------------------------------------------ALCKSSEEVI 211

Query: 241 KVQNEYLKKIEEER-NMPNVPDFPPSESEEEEEEEEEEEEEDKAIEDELGRI 291
             Q EYLK   +E+ + P +PDFP S++E EEEEE+++E     I  ELG I
Sbjct: 212 AAQEEYLKNAWQEKLDRPALPDFPQSDTESEEEEEKKDENAATKITKELGDI 263

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172448|gb|EFN63901.1| UPF0293 protein C16orf42 [Camponotus floridanus]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 123/189 (65%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWDM+HCDPKKCSGRKL RH LIKIL+LG RF G                          
Sbjct: 55  MWDMEHCDPKKCSGRKLVRHGLIKILRLGVRFAG-------------------------- 88

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           +CLTPVG +CV   D +IIQE G AVVDCSWA++++TPFN+MKT
Sbjct: 89  ----------------LCLTPVGDKCVCPTDREIIQEYGCAVVDCSWARLDDTPFNRMKT 132

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           +HPRLLPFL+AANPINYGKPC+LSCVEA+AAT II G+P+EA  YL KF WG  FL LN 
Sbjct: 133 SHPRLLPFLVAANPINYGKPCQLSCVEAIAATLIITGYPEEANLYLGKFSWGHAFLELNS 192

Query: 181 ELLDLYKEC 189
           ELL+ Y  C
Sbjct: 193 ELLEKYALC 201

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028977|gb|EGI68992.1| UPF0293 protein C16orf42 [Acromyrmex echinatior]

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 126/191 (65%), Gaps = 42/191 (21%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWDM+HCDPKKCSGRKLARH LI+IL+LG RF G                          
Sbjct: 28  MWDMEHCDPKKCSGRKLARHGLIRILRLGARFPG-------------------------- 61

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           +CLTP+G +CVS  D DI+QE G AVVDCSWA++++TPFN+MKT
Sbjct: 62  ----------------LCLTPMGDKCVSPTDCDIVQEYGCAVVDCSWARLDDTPFNRMKT 105

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           +HPR+LPFL+AANPINYGKP +LSCVEA+AAT II GFP EA+ YL KF WG +FL LN 
Sbjct: 106 SHPRILPFLVAANPINYGKPYQLSCVEAIAATLIITGFPNEAELYLGKFSWGHSFLELNS 165

Query: 181 ELLDLYKECDT 191
           ELL+ Y  C T
Sbjct: 166 ELLEKYALCTT 176

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012742|ref|XP_003690436.1| PREDICTED: uncharacterized protein LOC100869694 [Apis florea]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 126/189 (66%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD++HCDPKKCSGRKL RH L+KIL+LG RF G                          
Sbjct: 451 MWDLEHCDPKKCSGRKLVRHGLVKILRLGVRFSG-------------------------- 484

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTP+G +CVS  D DII++ G AVVDCSWA++++TPF++M+T
Sbjct: 485 ----------------LVLTPIGQKCVSPTDRDIIKDYGCAVVDCSWARLDDTPFSRMRT 528

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           ++PRLLPFL+AANPINYGKPC+LSCVEA+AAT II GFP+EAKFYL KF WG +FL LN+
Sbjct: 529 SNPRLLPFLVAANPINYGKPCQLSCVEAIAATLIITGFPEEAKFYLGKFSWGHSFLELND 588

Query: 181 ELLDLYKEC 189
           ELL  Y  C
Sbjct: 589 ELLKTYSLC 597

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864286|ref|XP_003707610.1| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog [Megachile rotundata]

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 125/189 (66%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD++ CDPKKCSGRKL RH L+KIL+LG RF G                          
Sbjct: 55  MWDLEQCDPKKCSGRKLVRHGLVKILRLGARFSG-------------------------- 88

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTPVG +CVS  D DIIQ+ G AVVDCSWA++++TPFN+M+T
Sbjct: 89  ----------------LVLTPVGQKCVSPTDRDIIQDYGCAVVDCSWARLDDTPFNRMRT 132

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           ++PRLLPFL+AANPINYG+PC+LSCVEA+AAT II GF +EAKFYL KF WG +FL LNE
Sbjct: 133 SNPRLLPFLVAANPINYGRPCQLSCVEAIAATLIITGFIEEAKFYLGKFSWGHSFLELNE 192

Query: 181 ELLDLYKEC 189
           ELL+ Y  C
Sbjct: 193 ELLNKYSLC 201

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788025|ref|XP_625167.2| PREDICTED: UPF0293 protein C16orf42-like [Apis mellifera]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 126/189 (66%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD++HCDPKKCSG+KL RH L+KIL+LG RF G                          
Sbjct: 56  MWDLEHCDPKKCSGKKLVRHGLVKILRLGARFSG-------------------------- 89

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTP+G +CVS  D DII++ G AVVDCSWA++++TPF++M+T
Sbjct: 90  ----------------LVLTPIGQKCVSPTDRDIIKDYGCAVVDCSWARLDDTPFSRMRT 133

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
           ++PRLLPFL+AANPINYGKPC+LSCVEA+AAT II GFP+EAKFYL KF WG +FL LN+
Sbjct: 134 SNPRLLPFLVAANPINYGKPCQLSCVEAIAATLIITGFPEEAKFYLGKFSWGHSFLKLND 193

Query: 181 ELLDLYKEC 189
           ELL  Y  C
Sbjct: 194 ELLKTYSLC 202

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015816|ref|XP_002428543.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513177|gb|EEB15805.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/288 (42%), Positives = 154/288 (53%), Gaps = 88/288 (30%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD+ HCDPKKC+GRKL RHNLIK L LG++F G                          
Sbjct: 70  MWDLNHCDPKKCTGRKLLRHNLIKTLPLGQKFNG-------------------------- 103

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTPVG +C+SK D ++I+  G AVVDCSWAK+ ETPF+KMKT
Sbjct: 104 ----------------VALTPVGQKCLSKEDRNLIESFGIAVVDCSWAKLSETPFHKMKT 147

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAG-FPKEAKFYLDKFKWGRTFLTLN 179
            +PRLLP+L+AANPINYGKPC+LSCVEALAA  II G F  EA F+L KFKWG +F  LN
Sbjct: 148 PYPRLLPWLVAANPINYGKPCQLSCVEALAAALIITGSFNDEADFFLSKFKWGHSFTELN 207

Query: 180 EELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDV 239
           +ELL+ Y +CD                                            TS +V
Sbjct: 208 QELLEKYSDCD--------------------------------------------TSAEV 223

Query: 240 VKVQNEYLKKIEEERNMPNVPDFPPSESEEEEEEEEEEEEEDKAIEDE 287
           VK+QN++L+    +RN  NV D   S SE+E E   E  E  + +E+E
Sbjct: 224 VKIQNDFLETEFAKRN-KNVEDILCSNSEDEGEITSELNENSRVVENE 270

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125951|ref|XP_001654463.1| hypothetical protein AaeL_AAEL010333 [Aedes aegypti] gi|108873473|gb|EAT37698.1| AAEL010333-PA [Aedes aegypti]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 123/191 (64%), Gaps = 42/191 (21%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD+ HCDPKKCSGRKLARH LI+ L+LG++F G                          
Sbjct: 76  MWDLNHCDPKKCSGRKLARHGLIENLRLGQKFPG-------------------------- 109

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTPVGV CVS  D  IIQ +G AVVDCSWA+++ETPFNKMK+
Sbjct: 110 ----------------LVLTPVGVNCVSPQDKSIIQSSGIAVVDCSWARLDETPFNKMKS 153

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
            HPRLLPFL+AANPINYGKPCKLSCVEA+AA+  I GF  EA +YL+KF WG +F+ LN+
Sbjct: 154 PHPRLLPFLVAANPINYGKPCKLSCVEAIAASMYITGFKDEALWYLNKFSWGHSFVELNQ 213

Query: 181 ELLDLYKECDT 191
           ELLD Y  C +
Sbjct: 214 ELLDSYAACGS 224

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617627|gb|EHJ70898.1| hypothetical protein KGM_13042 [Danaus plexippus]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 120/190 (63%), Gaps = 42/190 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD+ HCDPKKCSGRKL+RHNLIK LKLG+RF G                          
Sbjct: 57  MWDLNHCDPKKCSGRKLSRHNLIKNLKLGQRFPG-------------------------- 90

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + L+PVG QCVS  D +II++ G AV+DCSWAKI+ETPF +MK+
Sbjct: 91  ----------------LVLSPVGTQCVSPNDKEIIEKFGLAVIDCSWAKIDETPFGRMKS 134

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
            HPRLLPFL+AANPINYGKP +LSCVEALAA   I G  KEA FYL KF WG +FL LN 
Sbjct: 135 AHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHRKEASFYLSKFSWGHSFLELNS 194

Query: 181 ELLDLYKECD 190
           E+LD+Y  C 
Sbjct: 195 EVLDIYSSCS 204

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614886|dbj|BAM20446.1| simila to CG4338, partial [Papilio polytes]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 120/189 (63%), Gaps = 42/189 (22%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           MWD+ HCDPKKCSGRKL RHNLIK LKLG+RF+G                          
Sbjct: 61  MWDLNHCDPKKCSGRKLLRHNLIKNLKLGQRFQG-------------------------- 94

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + L+PVG QCVS  D DII++ G AV+DCSWAKI+ETPF +MK+
Sbjct: 95  ----------------LVLSPVGSQCVSPNDKDIIEKYGLAVIDCSWAKIDETPFGRMKS 138

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
            HPRLLPFL+AANPINYGKP +LSCVEALAA   I G  KEAKFYL KF WG +FL LN 
Sbjct: 139 PHPRLLPFLVAANPINYGKPYQLSCVEALAAALFITGHKKEAKFYLSKFSWGHSFLELNS 198

Query: 181 ELLDLYKEC 189
           ++L LY  C
Sbjct: 199 DVLSLYSAC 207

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
ZFIN|ZDB-GENE-040718-63	297	tsr3 "TSR3, 20S rRNA accumulat	0.549	0.538	0.470	2e-47
UNIPROTKB|D4A6X9	263	RGD1565744 "Probable ribosome	0.388	0.429	0.601	8.6e-47
MGI|MGI:1915577	323	Tsr3 "TSR3 20S rRNA accumulati	0.388	0.349	0.592	1.4e-46
UNIPROTKB|F1RFZ6	316	TSR3 "Probable ribosome biogen	0.388	0.357	0.601	1.8e-46
UNIPROTKB|A5PK98	315	C25H16ORF42 "Probable ribosome	0.446	0.412	0.553	2.3e-46
UNIPROTKB|Q9UJK0	312	TSR3 "Ribosome biogenesis prot	0.388	0.362	0.584	6e-46
UNIPROTKB|F1PWP9	312	TSR3 "Probable ribosome biogen	0.388	0.362	0.592	4.1e-45
TAIR|locus:2184128	266	AT5G10070 "AT5G10070" [Arabido	0.391	0.428	0.543	2.5e-43
CGD|CAL0002246	346	orf19.5802 [Candida albicans (	0.450	0.378	0.471	1.1e-42
UNIPROTKB|Q5A0K9	346	TSR3 "Ribosome biogenesis prot	0.450	0.378	0.471	1.1e-42

ZFIN|ZDB-GENE-040718-63 tsr3 "TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 379 (138.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
 Identities = 79/168 (47%), Positives = 108/168 (64%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+P+G + V+ AD +I+   G AV+DCSWA++E+TPF+KM  +HPRLLP+L+AANP+N
Sbjct:    95 LILSPMGTKYVTPADREIVAHGGLAVIDCSWARLEDTPFSKMIGSHPRLLPYLVAANPVN 154

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLY----KECDTI 192
             YGKPCKLSCVEA AATF I GF   A   L KFKWG  FL LN+ LL+ Y     E + +
Sbjct:   155 YGKPCKLSCVEAYAATFCIVGFRDLAVLLLRKFKWGLGFLELNKTLLERYASSQSEEELL 214

Query:   193 FYEDLDGERFPKEAKFYLDKFKW--GRTFLTLNEELLDLYKECDTSTD 238
               E       P+E +  +D F    GR F+ LN  +   Y + D +++
Sbjct:   215 AVEKEFLSATPQEEE--IDPFDVDSGRDFVNLNRPVQAKYDDSDNTSE 260

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006364 "rRNA processing" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|D4A6X9 RGD1565744 "Probable ribosome biogenesis protein C16orf42 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 68/113 (60%), Positives = 85/113 (75%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG Q VS AD  ++ ++G AV+DCSWAK++ETPF KM+ +H RLLP+L+AANP+N
Sbjct:    35 LVLSPVGTQYVSPADRQLVAQSGIAVIDCSWAKLDETPFGKMRGSHLRLLPYLVAANPVN 94

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKEC 189
             YG+PCKLSCVEA AA F I GF   A   L KFKWG+ FL LN +LLD Y  C
Sbjct:    95 YGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRQLLDKYAAC 147

GO:0006364 "rRNA processing" evidence=IEA

MGI|MGI:1915577 Tsr3 "TSR3 20S rRNA accumulation" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
 Identities = 67/113 (59%), Positives = 85/113 (75%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG + VS AD  ++ ++G AV+DCSWAK+++TPF KM+ +H RLLP+L+AANP+N
Sbjct:    96 LVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLPYLVAANPVN 155

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKEC 189
             YG+PCKLSCVEA AA F I GF   A   L KFKWG+ FL LN ELLD Y  C
Sbjct:   156 YGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYAAC 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1RFZ6 TSR3 "Probable ribosome biogenesis protein C16orf42 homolog" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 68/113 (60%), Positives = 84/113 (74%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG Q VS AD  ++ ++G AV+DCSWA++ ETPF KM+ +H RLLP L+AANP+N
Sbjct:    96 LVLSPVGSQYVSPADRQLVAQSGVAVIDCSWARLNETPFGKMRGSHLRLLPHLVAANPVN 155

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKEC 189
             YG+PC+LSCVEA AATF I GF   A   L KFKWG+ FL LN ELLD Y  C
Sbjct:   156 YGRPCRLSCVEAFAATFCILGFSDLAVLLLRKFKWGKGFLDLNRELLDKYAAC 208

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|A5PK98 C25H16ORF42 "Probable ribosome biogenesis protein C16orf42 homolog" [Bos taurus (taxid:9913)]

 Score = 376 (137.4 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 73/132 (55%), Positives = 94/132 (71%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG Q VS AD  ++ ++G AV+DCSWA+++ETPF KM+ +H RLLP L+AANP+N
Sbjct:    96 LVLSPVGSQYVSPADRHLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPHLVAANPVN 155

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYED 196
             YG+PC+LSCVEA AATF I GF   A   L KFKWG+ FL LN +LLD Y  C +   E 
Sbjct:   156 YGRPCRLSCVEAFAATFCILGFSDLAVILLRKFKWGKGFLDLNRQLLDKYAACSSP-EEV 214

Query:   197 LDGER-FPKEAK 207
             L  E+ F  +AK
Sbjct:   215 LQAEQEFLAQAK 226

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q9UJK0 TSR3 "Ribosome biogenesis protein TSR3 homolog" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 66/113 (58%), Positives = 85/113 (75%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG Q  S AD  ++ ++G AV+DCSWA+++ETPF KM+ +H RLLP+L+AANP+N
Sbjct:    96 LVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVN 155

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKEC 189
             YG+P +LSCVEA AATF I GFP  A   L KFKWG+ FL LN +LLD Y  C
Sbjct:   156 YGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAAC 208

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1PWP9 TSR3 "Probable ribosome biogenesis protein C16orf42 homolog" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 67/113 (59%), Positives = 82/113 (72%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG Q VS AD  ++ + G AV+DCSWA++ ETPF KM+ +H RLLP L+AANP+N
Sbjct:    96 LVLSPVGSQYVSCADRQLVAQCGVAVIDCSWARLNETPFGKMRGSHLRLLPHLVAANPVN 155

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKEC 189
             YG+PCKLSCVEA AAT  I GF   A   L KFKWG+ FL LN +LLD Y  C
Sbjct:   156 YGRPCKLSCVEAFAATLCILGFSDLAIILLRKFKWGKGFLDLNRQLLDKYAAC 208

GO:0006364 "rRNA processing" evidence=IEA

TAIR|locus:2184128 AT5G10070 "AT5G10070" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 62/114 (54%), Positives = 88/114 (77%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             + L+PVG QCVS+ D+D+I+  G AVVDCSWA++ + PF K++   PRLLP+L+AANP+N
Sbjct:    82 VVLSPVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVN 141

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECD 190
             YG+PC+LSCVEAL+A  I+ G  + A+  L KFKWG  FL+LN+++L  Y +C+
Sbjct:   142 YGRPCELSCVEALSAALILCGEKETAELLLGKFKWGHAFLSLNKDILKEYSKCE 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

CGD|CAL0002246 orf19.5802 [Candida albicans (taxid:5476)]

 Score = 339 (124.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 65/138 (47%), Positives = 92/138 (66%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             I ++P G   V   D +I++ NGAAVV+CSWA+++E PFNK+   + RLLP+L+AANP+N
Sbjct:    89 IVVSPNGKSIVCPNDKEIVETNGAAVVECSWARLDEIPFNKIGGKNERLLPYLVAANPVN 148

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYED 196
             YG+P +L+CVEALAA F I G    A+  L  F WG TFL +NEEL++LY++C       
Sbjct:   149 YGRPWRLNCVEALAACFAIVGHTDWAELLLSNFSWGLTFLKINEELIELYQQCT------ 202

Query:   197 LDGERFPKEAKFYLDKFK 214
              D E   K  + +L+K +
Sbjct:   203 -DSESITKAQEQWLEKIE 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030490 "maturation of SSU-rRNA" evidence=IEA

UNIPROTKB|Q5A0K9 TSR3 "Ribosome biogenesis protein TSR3" [Candida albicans SC5314 (taxid:237561)]

 Score = 339 (124.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 65/138 (47%), Positives = 92/138 (66%)

Query:    77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
             I ++P G   V   D +I++ NGAAVV+CSWA+++E PFNK+   + RLLP+L+AANP+N
Sbjct:    89 IVVSPNGKSIVCPNDKEIVETNGAAVVECSWARLDEIPFNKIGGKNERLLPYLVAANPVN 148

Query:   137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYED 196
             YG+P +L+CVEALAA F I G    A+  L  F WG TFL +NEEL++LY++C       
Sbjct:   149 YGRPWRLNCVEALAACFAIVGHTDWAELLLSNFSWGLTFLKINEELIELYQQCT------ 202

Query:   197 LDGERFPKEAKFYLDKFK 214
              D E   K  + +L+K +
Sbjct:   203 -DSESITKAQEQWLEKIE 219

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	291
COG2042	179	COG2042, COG2042, Uncharacterized conserved protei	2e-56
pfam04034	128	pfam04034, DUF367, Domain of unknown function (DUF	2e-54
PRK02287	171	PRK02287, PRK02287, hypothetical protein; Provisio	3e-52
pfam04068	35	pfam04068, RLI, Possible Fer4-like domain in RNase	1e-08
pfam04034	128	pfam04034, DUF367, Domain of unknown function (DUF	7e-08
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003

>gnl|CDD|224953 COG2042, COG2042, Uncharacterized conserved protein [Function unknown]

 Score =  179 bits (456), Expect = 2e-56
 Identities = 86/251 (34%), Positives = 113/251 (45%), Gaps = 87/251 (34%)

Query: 1   MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
           ++    CDPKKC+G+KL R  L ++L++G +F G                          
Sbjct: 16  IYHAGQCDPKKCTGKKLERFGLARLLRVGGKFPG-------------------------- 49

Query: 61  DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
                           + LTP   + +S AD DI++  G  VVDCSW ++E   F K++ 
Sbjct: 50  ----------------VVLTPFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRG 92

Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
              R LPFL+AANP+NYGKP KLS  EALAA   I GF  EA                  
Sbjct: 93  REHRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKDEA-----------------S 135

Query: 181 ELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV 240
           EL                           L KFKWG TFL LN+ELL+ Y   + S +VV
Sbjct: 136 EL---------------------------LSKFKWGHTFLELNKELLEEYSNAEDSAEVV 168

Query: 241 KVQNEYLKKIE 251
           ++Q EYL+K E
Sbjct: 169 EIQEEYLEKGE 179

Length = 179

>gnl|CDD|112833 pfam04034, DUF367, Domain of unknown function (DUF367)

 Score =  172 bits (438), Expect = 2e-54
 Identities = 69/114 (60%), Positives = 83/114 (72%)

Query: 77  ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
           + LTP     +S  D DI++ +G AVVDCSWA++EE PF K++  H RLLPFL+AANP+N
Sbjct: 1   LVLTPFAEIALSPEDKDIVERSGIAVVDCSWARLEEVPFKKIRGRHERLLPFLVAANPVN 60

Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECD 190
           YGKPCKLSCVEALAA   I GF  EA   L KFKWG TFL LN+ELL+ Y  C+
Sbjct: 61  YGKPCKLSCVEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEAYSNCE 114

Length = 128

>gnl|CDD|235024 PRK02287, PRK02287, hypothetical protein; Provisional

 Score =  168 bits (427), Expect = 3e-52
 Identities = 80/247 (32%), Positives = 106/247 (42%), Gaps = 85/247 (34%)

Query: 5   KHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 64
              DPKKC+ RKL R  L ++++     R  P+ +                         
Sbjct: 10  NQDDPKKCTARKLVRFGLARLVRSI---RKIPRGS------------------------- 41

Query: 65  ACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPR 124
                       I L P   + +S AD DI+++ G   +DCSW + E   F K+   H R
Sbjct: 42  ------------IVLNPFAEKALSPADRDIVEKRGIVALDCSWNEAERV-FFKLLRGHHR 88

Query: 125 LLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLD 184
            LPFL+AANP+NYGKP KLS VEALAA   I GF +EA                 E++  
Sbjct: 89  RLPFLVAANPVNYGKPFKLSSVEALAAALYILGFKEEA-----------------EKI-- 129

Query: 185 LYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQN 244
                                    L KFKWG TFL LN+E L+ Y     S ++V++Q 
Sbjct: 130 -------------------------LSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQK 164

Query: 245 EYLKKIE 251
           EYL KI 
Sbjct: 165 EYLGKIL 171

Length = 171

>gnl|CDD|217870 pfam04068, RLI, Possible Fer4-like domain in RNase L inhibitor, RLI

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 1  MWDMKHCDPKKCSGRKLARHNLIKILKLGER 31
          + D   CDPKKC+GRK AR   +++++ G++
Sbjct: 5  IVDFDQCDPKKCTGRKCARFCPVRLVRTGKK 35

Possible metal-binding domain in endoribonuclease RNase L inhibitor. Found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, pfam00037. Also often found adjacent to the DUF367 domain pfam04034 in uncharacterized proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons, and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L. Length = 35

>gnl|CDD|112833 pfam04034, DUF367, Domain of unknown function (DUF367)

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 34  GFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
           GF  EA   L KFKWG TFL LN+ELL+ Y  C+
Sbjct: 81  GFKDEASELLSKFKWGHTFLELNKELLEAYSNCE 114

Length = 128

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 257 PNVPDFPPSESEEEEEEEEEEEEEDKAIEDE 287
           P   +    E E  EEEEEEEEEE++  E+E
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 17/23 (73%), Positives = 20/23 (86%)

Query: 265 SESEEEEEEEEEEEEEDKAIEDE 287
           SE EEEEEEEEEEEEE++  E+E
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG3154|consensus	263		100.0
COG2042	179	Uncharacterized conserved protein [Function unknow	100.0
PRK02287	171	hypothetical protein; Provisional	100.0
PF04034	127	DUF367: Domain of unknown function (DUF367); Inter	100.0
PF04034	127	DUF367: Domain of unknown function (DUF367); Inter	99.88
KOG3154|consensus	263		99.85
COG2042	179	Uncharacterized conserved protein [Function unknow	99.84
PRK02287	171	hypothetical protein; Provisional	99.83
PF04068	35	RLI: Possible Fer4-like domain in RNase L inhibito	98.65
PF03942	203	DTW: DTW domain; InterPro: IPR005636 This presumed	93.71

>KOG3154|consensus

Probab=100.00  E-value=2.7e-76  Score=535.23  Aligned_cols=171  Identities=58%  Similarity=1.141  Sum_probs=166.4

Q ss_pred             CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652           1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT   80 (291)
Q Consensus         1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~   80 (291)
                      ||||+||||||||||||.||+||..|..+..+-|                                          ||||
T Consensus        47 mwdf~hCdpkrCsGkKL~rlglv~~lr~g~kF~G------------------------------------------vVlS   84 (263)
T KOG3154|consen   47 MWDFGHCDPKRCSGKKLARLGLVRNLRVGQKFGG------------------------------------------VVLS   84 (263)
T ss_pred             hhcccCCCccccchHHHHhhhhHHHhhccCccCc------------------------------------------eEEC
Confidence            9999999999999999999999999999999999                                          9999


Q ss_pred             CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652          81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK  160 (291)
Q Consensus        81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~  160 (291)
                      |+|++||||+|+++|.+.|++||||||++|+++||.||+..|+||||||||||||||||||+|||||||||+|||+||++
T Consensus        85 P~gk~~vsp~D~d~v~~~G~avvdCSWArLdevpF~kl~~~h~RLLP~lVAANpVNYGrP~rLnCvEAlaA~l~I~G~~e  164 (263)
T KOG3154|consen   85 PVGKQCVSPADRDVVERSGAAVVDCSWARLDEVPFGKLRGRHERLLPYLVAANPVNYGRPWRLNCVEALAACLYICGFPE  164 (263)
T ss_pred             CCCCcccCHHHHHHHHhcCceEEecchhhccccchhhcCCCcccccchhhhcCccccCCCceecHHHHHHhHeeeecChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652         161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV  240 (291)
Q Consensus       161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~  240 (291)
                      +|..+|++|||||.||+||                                            +++|+.|++|.+++||+
T Consensus       165 ~A~~lL~~F~wG~~Fl~lN--------------------------------------------~~lLd~Ya~C~~s~ev~  200 (263)
T KOG3154|consen  165 EARELLDKFKWGHAFLELN--------------------------------------------KDLLDEYAKCASSAEVV  200 (263)
T ss_pred             HHHHHHhcCcchHHHHHHh--------------------------------------------HHHHHHHHhhCCHHHHH
Confidence            9999999999999999999                                            89999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCC
Q psy4652         241 KVQNEYLKKIEEERNMP  257 (291)
Q Consensus       241 ~iq~eyl~~~~~~~~~~  257 (291)
                      ++|++|++++++..+.+
T Consensus       201 ~~qn~~Le~~~~~~Qe~  217 (263)
T KOG3154|consen  201 EVQNEFLESQEKSPQEP  217 (263)
T ss_pred             HHHHHHHHHhhhcccCC
Confidence            99999999888764443

>COG2042 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.3e-70  Score=479.93  Aligned_cols=163  Identities=51%  Similarity=0.944  Sum_probs=158.8

Q ss_pred             CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652           1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT   80 (291)
Q Consensus         1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~   80 (291)
                      |||++|||||||||+||.|+++|+.+.-+....|                                          ||||
T Consensus        16 i~~~~qcDPKkCT~~KL~R~g~a~~~r~~~~~~~------------------------------------------vvL~   53 (179)
T COG2042          16 IYHAGQCDPKKCTGKKLERFGLARLLRVGGKFPG------------------------------------------VVLT   53 (179)
T ss_pred             EEecCCCChhhhhHHHHHhcchhhhhcccCccce------------------------------------------eEEC
Confidence            7999999999999999999999999998888777                                          9999


Q ss_pred             CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652          81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK  160 (291)
Q Consensus        81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~  160 (291)
                      |.|.+.|||+|++++++.||+||||||++++++ |.++++.++|+||||||||||||||||+||||||+||||||+||++
T Consensus        54 P~ae~~lSp~D~~iver~Gi~vvdcSW~~~~~~-f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss~EAlaAaLYI~G~~d  132 (179)
T COG2042          54 PFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRGREHRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKD  132 (179)
T ss_pred             CCcccccChhhHHHHHhcCeEEEEccHHHHHHH-HHhcCccccccccHhhhcCCcccCCcchhchHHHHHHHHHHhCcHH
Confidence            999999999999999999999999999999988 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652         161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV  240 (291)
Q Consensus       161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~  240 (291)
                      +|..+|++|+|||+||+||                                            +|+||+|++|+++.||+
T Consensus       133 eA~~lls~F~WG~~FleLN--------------------------------------------~e~Le~Y~~a~~s~eVv  168 (179)
T COG2042         133 EASELLSKFKWGHTFLELN--------------------------------------------KELLEEYSNAEDSAEVV  168 (179)
T ss_pred             HHHHHHhhCcccHHHHHHh--------------------------------------------HHHHHHHHhccchHHHH
Confidence            9999999999999999999                                            89999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4652         241 KVQNEYLKKI  250 (291)
Q Consensus       241 ~iq~eyl~~~  250 (291)
                      +||++|+++.
T Consensus       169 eiq~~~l~~~  178 (179)
T COG2042         169 EIQEEYLEKG  178 (179)
T ss_pred             HHHHHHHhcc
Confidence            9999999874

>PRK02287 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-70  Score=476.54  Aligned_cols=164  Identities=46%  Similarity=0.809  Sum_probs=156.5

Q ss_pred             CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652           1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT   80 (291)
Q Consensus         1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~   80 (291)
                      ||||+||||||||||||.|++.|+.+.....+.+                                        ++||||
T Consensus         6 ~~~~~qcDPKkCTg~KL~r~g~~~~~~~~~~~~~----------------------------------------g~IvL~   45 (171)
T PRK02287          6 VYHANQDDPKKCTARKLVRFGLARLVRSIRKIPR----------------------------------------GSIVLN   45 (171)
T ss_pred             EEeCCCCCcccchHHHHHhCCceeEecccccCCC----------------------------------------CeEEEC
Confidence            8999999999999999999999999988777754                                        359999


Q ss_pred             CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652          81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK  160 (291)
Q Consensus        81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~  160 (291)
                      |+|+++|||+|+++++++|++||||||++++++||.+++ +++|+||||||||||||||||+||||||+||||||+|+++
T Consensus        46 P~a~~~lSp~D~~~~~~~Gi~vlDcSW~~~~~~~~~~~~-~~~R~LP~LvAaNPvNYGkp~kLs~vEAlAaaLyI~G~~~  124 (171)
T PRK02287         46 PFAEKALSPADRDIVEKRGIVALDCSWNEAERVFFKLLR-GHHRRLPFLVAANPVNYGKPFKLSSVEALAAALYILGFKE  124 (171)
T ss_pred             CCCCcCcCHHHHHhhhhCCEEEEECCHHHHhhhhhhccC-CCcccCccccccCCCcCCCcccccHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999998874 5699999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652         161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV  240 (291)
Q Consensus       161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~  240 (291)
                      +|..+|++|+|||+|++||                                            +|+||+|++|+|++||+
T Consensus       125 ~A~~ll~~F~WG~~Fl~lN--------------------------------------------~elLe~Y~~~~~~~ev~  160 (171)
T PRK02287        125 EAEKILSKFKWGHTFLELN--------------------------------------------KEPLEAYARAKDSEEIV  160 (171)
T ss_pred             HHHHHHhhCCChHHHHHHH--------------------------------------------HHHHHHHHccCCHHHHH
Confidence            9999999999999999999                                            89999999999999999


Q ss_pred             HHHHHHHHH
Q psy4652         241 KVQNEYLKK  249 (291)
Q Consensus       241 ~iq~eyl~~  249 (291)
                      ++|++|+++
T Consensus       161 ~~q~~~~~~  169 (171)
T PRK02287        161 EIQKEYLGK  169 (171)
T ss_pred             HHHHHHHhh
Confidence            999999975

>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function

Probab=100.00  E-value=8.1e-63  Score=413.49  Aligned_cols=127  Identities=55%  Similarity=1.072  Sum_probs=124.8

Q ss_pred             EEeCCCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHc
Q psy4652          77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIA  156 (291)
Q Consensus        77 i~l~P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~  156 (291)
                      |||||+|+++|||+||++|+++|++||||||++++++ |.+|+.+|+|+|||||||||||||||||||||||+||||||+
T Consensus         1 ivLsP~~~~~lSp~Dr~iv~~~Gi~viDCSW~~l~~~-f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~   79 (127)
T PF04034_consen    1 IVLSPFATKYLSPADREIVEKSGIAVIDCSWNRLDEV-FKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYIL   79 (127)
T ss_pred             CeeCCCCCcccCHHHHHHHHHCCEEEEECcHHHHHHH-HHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHc
Confidence            7999999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCc
Q psy4652         157 GFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTS  236 (291)
Q Consensus       157 g~~~~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~  236 (291)
                      ||+++|..+|++||||++|++||                                            +|+||+|++|+|+
T Consensus        80 G~~~~A~~lL~~FkWG~~F~~LN--------------------------------------------~elLe~Y~~~~~~  115 (127)
T PF04034_consen   80 GFKEQAEELLSKFKWGHTFLELN--------------------------------------------KELLEAYAKCKTS  115 (127)
T ss_pred             CCHHHHHHHHhcCCCcHHHHHHH--------------------------------------------HHHHHHHHcCCCH
Confidence            99999999999999999999999                                            8999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4652         237 TDVVKVQNEYLK  248 (291)
Q Consensus       237 ~Ev~~iq~eyl~  248 (291)
                      +||+++|++|++
T Consensus       116 ~ev~~~q~~~le  127 (127)
T PF04034_consen  116 EEVIEIQNEYLE  127 (127)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999984

It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).

>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function

Probab=99.88  E-value=1.9e-23  Score=176.07  Aligned_cols=59  Identities=37%  Similarity=0.609  Sum_probs=57.8

Q ss_pred             hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652          16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL   74 (291)
Q Consensus        16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~   74 (291)
                      |++|||||||+||+|||+|++++|+.||++||||++|++||+|+|++|++|+|++||+.
T Consensus        62 kP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~  120 (127)
T PF04034_consen   62 KPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIE  120 (127)
T ss_pred             CcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999975

It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).

>KOG3154|consensus

Probab=99.85  E-value=4e-22  Score=182.28  Aligned_cols=59  Identities=41%  Similarity=0.666  Sum_probs=57.6

Q ss_pred             hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652          16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL   74 (291)
Q Consensus        16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~   74 (291)
                      |+|||||||||||++|||||+++|+.||++|+|||+||+||++|||.|++|.+++||+.
T Consensus       143 rP~rLnCvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~  201 (263)
T KOG3154|consen  143 RPWRLNCVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVE  201 (263)
T ss_pred             CCceecHHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999975

>COG2042 Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1.1e-21  Score=172.71  Aligned_cols=59  Identities=36%  Similarity=0.504  Sum_probs=57.5

Q ss_pred             hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652          16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL   74 (291)
Q Consensus        16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~   74 (291)
                      |+||||||||+||||||+||+++|.+||++|+|||+|++||+|+||+|+.|+++.||+.
T Consensus       111 kp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVve  169 (179)
T COG2042         111 KPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVE  169 (179)
T ss_pred             CcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999874

>PRK02287 hypothetical protein; Provisional

Probab=99.83  E-value=1.1e-21  Score=172.06  Aligned_cols=59  Identities=36%  Similarity=0.487  Sum_probs=57.8

Q ss_pred             hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652          16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL   74 (291)
Q Consensus        16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~   74 (291)
                      |++||||||||||++||+|+.++|+.||++|+||++|++||+|+|++|++|+|++||+.
T Consensus       103 kp~kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~  161 (171)
T PRK02287        103 KPFKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVE  161 (171)
T ss_pred             CcccccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999985

>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor

Probab=98.65  E-value=7.6e-09  Score=70.38  Aligned_cols=28  Identities=46%  Similarity=1.144  Sum_probs=19.0

Q ss_pred             CCCCCCCCCCCcchhhhhhhchHHHHhh
Q psy4652           1 MWDMKHCDPKKCSGRKLARHNLIKILKL   28 (291)
Q Consensus         1 m~d~~~cDpkkcsg~kL~KLnCvEALaa   28 (291)
                      |||++|||||||||+||.|++-|+.+..
T Consensus         5 v~d~~~CdPkKCt~~kl~r~~~~~~~r~   32 (35)
T PF04068_consen    5 VWDFDQCDPKKCTGKKLIRFCPVRIVRT   32 (35)
T ss_dssp             EE-CCC--CCCCSS-HHHHH-HH--HHC
T ss_pred             EEEcCCCCccccCHHHHHhcCCceeeec
Confidence            7999999999999999999999877653

It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.

>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins

Probab=93.71  E-value=0.051  Score=47.70  Aligned_cols=72  Identities=22%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             HhcCeEEEecCccccccc----c-cc---cCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCCh-HH-HHHh
Q psy4652          96 QENGAAVVDCSWAKIEET----P-FN---KMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFP-KE-AKFY  165 (291)
Q Consensus        96 ~~~G~~vvdcSW~~~~~~----~-~~---~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~-~~-a~~~  165 (291)
                      ....+.|||..|++...+    | +.   ++.-...+.--|-+--||    ++.-||++||++.+|-.+|-. +. +..+
T Consensus       113 ~~~~lIviDgTW~qA~km~~~~p~l~~lp~v~l~~~~~s~y~lRk~~----~~~~lsT~EAv~~~L~~l~~~~~~~~~~L  188 (203)
T PF03942_consen  113 KPKTLIVIDGTWRQAKKMLRRSPWLQQLPRVSLKPSPPSFYRLRKQP----KEGCLSTLEAVAYALKELEEAPDEVADNL  188 (203)
T ss_pred             CceEEEEECCchHHHHHHHhhCccccCCceeeCCCCcccceeeEecC----CCCCEeHHHHHHHHHHHhcchhHHHHHHH
Confidence            345789999999875432    1 01   111112222333444444    678899999999999999999 54 8888


Q ss_pred             hccCCC
Q psy4652         166 LDKFKW  171 (291)
Q Consensus       166 l~~fkw  171 (291)
                      |+-|+.
T Consensus       189 l~~f~~  194 (203)
T PF03942_consen  189 LDAFDA  194 (203)
T ss_pred             HHHHHH
Confidence            877754

Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00