Psyllid ID: psy4673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSESSSSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKELH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEcccccccccHHcHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHcccccHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHcHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEccHHHccccEEEEccccHHHHcc
Coil and Loop (DISEMBL)
msessssnnnneltkltncfdnyvLIDVganltnrkfgrDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARiypgmvystagihpheakswdeDYIDQLRDLVSNtgnstmnrynSSQWITEIKQTLFTTFVDITALCEFCQknfsrkehlnrhlwvhkdssmmkelh
Flexible Loop (DISEMBL)
msessssnnnnELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQrakdsgvqkiiaigsslksskEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNfsrkehlnrhlwvhkdssmmkelh
Low Complexity Region (SEG)
MsessssnnnneLTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKELH
Disordered region (IsUnstruct)
*************TKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH**********
Disordered Region (DISOPRED)
*******************FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM**ELH
Disordered Region (DISEMBL)
**********NELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD********
Disordered Region (DISPRO)
************LTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSESSSSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKELH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
E6WHK1	260	Tat-linked quality contro	yes	N/A	0.491	0.323	0.416	2e-15
D0Z9R0	260	Tat-linked quality contro	yes	N/A	0.502	0.330	0.395	7e-15
C6DI71	260	Tat-linked quality contro	yes	N/A	0.485	0.319	0.409	8e-15
D0KC77	260	Tat-linked quality contro	yes	N/A	0.456	0.3	0.435	2e-14
Q6DAQ1	260	Tat-linked quality contro	yes	N/A	0.479	0.315	0.414	3e-14
A8G8C4	260	Tat-linked quality contro	yes	N/A	0.497	0.326	0.388	4e-14
E1SKR8	260	Tat-linked quality contro	yes	N/A	0.479	0.315	0.414	5e-14
C6C4V4	264	Tat-linked quality contro	yes	N/A	0.479	0.310	0.414	1e-13
B2VG45	259	Tat-linked quality contro	yes	N/A	0.497	0.328	0.376	2e-13
E0SLH6	264	Tat-linked quality contro	yes	N/A	0.485	0.314	0.409	2e-13

>sp|E6WHK1|TATD_PANSA Tat-linked quality control protein TatD OS=Pantoea sp. (strain At-9b) GN=tatD PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 55/84 (65%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D E VV RA+D+GV  ++  G++   S++A RLA  +PG  +STA
Sbjct: 1   MFDIGVNLTSTQFAKDREQVVARARDAGVTGLLITGTNALESQQAQRLAEWHPGYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSN 108
           G+HPH A +W  +  + LR L  +
Sbjct: 61  GVHPHHASAWSAETANTLRRLAES 84

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.
Pantoea sp. (strain At-9b) (taxid: 592316)
EC: 3EC: .EC: 1EC: .EC: 2EC: 1EC: .EC: -

>sp|D0Z9R0|TATD_EDWTE Tat-linked quality control protein TatD OS=Edwardsiella tarda (strain EIB202) GN=tatD PE=3 SV=1

 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           ++D+G NLTN +F  D+  VV RA+ +G+  +I  G++L  S +AL LA+ YP   ++TA
Sbjct: 1   MLDIGVNLTNGQFSGDVPQVVARARQAGLNGMIITGTNLTESAQALHLAQAYPDFCWATA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNTG 110
           G+HPH+A  W+E+    L  L+ +  
Sbjct: 61  GVHPHDAHRWNENSAADLEPLLRSPA 86

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Edwardsiella tarda (strain EIB202) (taxid: 498217)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|C6DI71|TATD_PECCP Tat-linked quality control protein TatD OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=tatD PE=3 SV=1

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 56/83 (67%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D E VV RAK +GV  I+  G++ + S++A+ LA+ YP   +STA
Sbjct: 1   MFDIGVNLTSSQFEKDREQVVIRAKQAGVSGILITGTNAQESQQAMLLAQAYPDYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVS 107
           G+HPH+A  W++   +Q+  + S
Sbjct: 61  GVHPHDASQWNDAVAEQIHHMAS 83

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|D0KC77|TATD_PECWW Tat-linked quality control protein TatD OS=Pectobacterium wasabiae (strain WPP163) GN=tatD PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 53/78 (67%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D E VV RAK +GV  I+  G++ + S +A+ LA+ YP   +STA
Sbjct: 1   MFDIGVNLTSSQFEQDREQVVIRAKQAGVSGILITGTNAQESHQAMLLAQAYPDYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQL 102
           G+HPH+A  W+ D  +Q+
Sbjct: 61  GVHPHDASQWNGDIAEQV 78

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Pectobacterium wasabiae (strain WPP163) (taxid: 561231)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6DAQ1|TATD_ERWCT Tat-linked quality control protein TatD OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=tatD PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D E VV RAK +GV  I+  G++ + S +A+ LA+ YP   +STA
Sbjct: 1   MFDIGVNLTSSQFEKDREQVVIRAKLAGVSGILITGTNAQESHQAMLLAQAYPDYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLV 106
           G+HPH+A  W++   +QL  + 
Sbjct: 61  GVHPHDASQWNDAIAEQLHQMA 82

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|A8G8C4|TATD_SERP5 Tat-linked quality control protein TatD OS=Serratia proteamaculans (strain 568) GN=tatD PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 55/85 (64%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D  +VV+RA+ +GV  ++  G+ L+ S+ A  LA+ +    +STA
Sbjct: 1   MFDIGVNLTSSQFAKDRPAVVERARAAGVTGLLITGTDLQESRAASELAQQHANFCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNT 109
           G+HPH A SWDE   +Q+ +L +  
Sbjct: 61  GVHPHHASSWDERVAEQICELAARP 85

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|E1SKR8|TATD_PANVC Tat-linked quality control protein TatD OS=Pantoea vagans (strain C9-1) GN=tatD PE=3 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F  D + VV+RA+D+GV  ++  G++   S+ A RLA   PG  +STA
Sbjct: 1   MFDIGVNLTSTQFASDRQKVVKRARDAGVTGMLITGTNALESQHAQRLAEAQPGFCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLV 106
           G+HPH A  W  +    LR L 
Sbjct: 61  GVHPHHASEWSTEIASTLRRLA 82

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Pantoea vagans (strain C9-1) (taxid: 712898)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|C6C4V4|TATD_DICDC Tat-linked quality control protein TatD OS=Dickeya dadantii (strain Ech703) GN=tatD PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F  D ++V+ RA+  GV  ++  G+ ++ S+ ALRLA   PG  +STA
Sbjct: 1   MFDIGVNLTSSQFESDRDAVISRARREGVTGMLLTGTGIEESRHALRLAEGAPGYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLV 106
           GIHPHEA +W +     +R L 
Sbjct: 61  GIHPHEASTWTDAAALSIRQLA 82

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Dickeya dadantii (strain Ech703) (taxid: 579405)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|B2VG45|TATD_ERWT9 Tat-linked quality control protein TatD OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tatD PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 54/85 (63%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D + V++RA+++GV  ++  G++   S++AL LAR +P   +STA
Sbjct: 1   MFDIGVNLTSTQFAKDRDKVIKRAREAGVSGMLITGTNALESQQALSLARQHPDYCWSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNT 109
           G+HPH A  W  +    LR L  + 
Sbjct: 61  GVHPHHASEWSGETAATLRRLAESP 85

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|E0SLH6|TATD_DICD3 Tat-linked quality control protein TatD OS=Dickeya dadantii (strain 3937) GN=tatD PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F  D E VV RA+ +GV  ++  G+S++ S++A  LA  YP    STA
Sbjct: 1   MFDIGVNLTSSQFRSDREQVVARARQAGVTGLLLTGTSVEESEQACLLAAQYPDYCGSTA 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVS 107
           G+HPH+A  W++D  D +  L  
Sbjct: 61  GVHPHDASGWNDDTADLIHQLAG 83

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.

Dickeya dadantii (strain 3937) (taxid: 198628)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
350534862	305	uncharacterized protein LOC100161590 [Ac	0.526	0.295	0.722	1e-33
239790414	159	ACYPI002802 [Acyrthosiphon pisum]	0.567	0.610	0.680	1e-33
239790424	156	ACYPI002802 [Acyrthosiphon pisum]	0.526	0.576	0.722	1e-33
156551269	309	PREDICTED: deoxyribonuclease tatD-like i	0.865	0.478	0.455	2e-33
239790420	313	ACYPI002802 [Acyrthosiphon pisum]	0.526	0.287	0.711	7e-33
239790418	194	ACYPI002802 [Acyrthosiphon pisum]	0.526	0.463	0.711	8e-33
383854237	311	PREDICTED: tat-linked quality control pr	0.631	0.347	0.562	1e-32
322791179	313	hypothetical protein SINV_14689 [Solenop	0.555	0.303	0.639	2e-32
340714187	311	PREDICTED: deoxyribonuclease tatD-like [	0.631	0.347	0.553	4e-32
307176271	293	Deoxyribonuclease tatD [Camponotus flori	0.543	0.317	0.648	4e-32

>gi|350534862|ref|NP_001232973.1| uncharacterized protein LOC100161590 [Acyrthosiphon pisum] gi|239790416|dbj|BAH71772.1| ACYPI002802 [Acyrthosiphon pisum] gi|239790422|dbj|BAH71775.1| ACYPI002802 [Acyrthosiphon pisum]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query: 20  FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM 79
           +DNY+LIDVG+N+ N+KF RDLESV+QRAKDSGVQKII   +SL++SKEALRLARIYPG 
Sbjct: 19  YDNYLLIDVGSNMVNKKFSRDLESVLQRAKDSGVQKIIVPCTSLRTSKEALRLARIYPGA 78

Query: 80  VYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           +YSTAGIHPHEAKSW+++Y D+LRD+  N 
Sbjct: 79  LYSTAGIHPHEAKSWEDNYYDELRDIAKNP 108

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790414|dbj|BAH71771.1| ACYPI002802 [Acyrthosiphon pisum]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 82/97 (84%)

Query: 13  LTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRL 72
           L  +   +DNY+LIDVG+N+ N+KF RDLESV+QRAKDSGVQKII   +SL++SKEALRL
Sbjct: 12  LDPIRENYDNYLLIDVGSNMVNKKFSRDLESVLQRAKDSGVQKIIVPCTSLRTSKEALRL 71

Query: 73  ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           ARIYPG +YSTAGIHPHEAKSW+++Y D+LRD+  N 
Sbjct: 72  ARIYPGALYSTAGIHPHEAKSWEDNYYDELRDIAKNP 108

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790424|dbj|BAH71776.1| ACYPI002802 [Acyrthosiphon pisum]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 80/90 (88%)

Query: 20  FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM 79
           +DNY+LIDVG+N+ N+KF RDLESV+QRAKDSGVQKII   +SL++SKEALRLARIYPG 
Sbjct: 19  YDNYLLIDVGSNMVNKKFSRDLESVLQRAKDSGVQKIIVPCTSLRTSKEALRLARIYPGA 78

Query: 80  VYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           +YSTAGIHPHEAKSW+++Y D+LRD+  N 
Sbjct: 79  LYSTAGIHPHEAKSWEDNYYDELRDIAKNP 108

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551269|ref|XP_001600975.1| PREDICTED: deoxyribonuclease tatD-like isoform 1 [Nasonia vitripennis] gi|345480646|ref|XP_003424187.1| PREDICTED: deoxyribonuclease tatD-like isoform 2 [Nasonia vitripennis]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 21/169 (12%)

Query: 1   MSESSSSNNNNE-LTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI 59
           MSE +S +  +E  + +T C++NYVL+DVGANLTN+K+ RDL+SV+QRAKD+GVQKI+  
Sbjct: 1   MSEDASGSKMDETASAMTQCYENYVLVDVGANLTNKKYSRDLDSVIQRAKDAGVQKIMVT 60

Query: 60  GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDE-DYIDQLRDLVSNT-----GNST 113
           G+S++SSKEALRL RIYPG +YSTAG+HPH+AKSW+  D +++L  + +N      G   
Sbjct: 61  GASIRSSKEALRLTRIYPGNLYSTAGVHPHDAKSWEGMDTLEELESIANNPECVAIGECG 120

Query: 114 MNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162
           ++ YN      EI++++F             QK       LN+ L +H+
Sbjct: 121 LD-YNRDFSEPEIQRSVF-------------QKQVELACRLNKPLVIHE 155

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790420|dbj|BAH71774.1| ACYPI002802 [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 79/90 (87%)

Query: 20  FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM 79
           +DNY+LIDVG+N+ N+KF RDLESV+QRAKDSGVQKII   +SL++SKEAL LARIYPG 
Sbjct: 27  YDNYLLIDVGSNMVNKKFSRDLESVLQRAKDSGVQKIIVPCTSLRTSKEALHLARIYPGA 86

Query: 80  VYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           +YSTAGIHPHEAKSW+++Y D+LRD+  N 
Sbjct: 87  LYSTAGIHPHEAKSWEDNYYDELRDIAKNP 116

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790418|dbj|BAH71773.1| ACYPI002802 [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 79/90 (87%)

Query: 20  FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM 79
           +DNY+LIDVG+N+ N+KF RDLESV+QRAKDSGVQKII   +SL++SKEAL LARIYPG 
Sbjct: 27  YDNYLLIDVGSNMVNKKFSRDLESVLQRAKDSGVQKIIVPCTSLRTSKEALHLARIYPGA 86

Query: 80  VYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           +YSTAGIHPHEAKSW+++Y D+LRD+  N 
Sbjct: 87  LYSTAGIHPHEAKSWEDNYYDELRDIAKNP 116

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854237|ref|XP_003702628.1| PREDICTED: tat-linked quality control protein TatD-like [Megachile rotundata]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 92/112 (82%), Gaps = 4/112 (3%)

Query: 1   MSESSSSNNNNELT---KLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII 57
           M+E+++++N  E T    +T C++NY+++DVGANLTN+K+ RDL+SV+QRAKD+GVQKI+
Sbjct: 1   MAENATASNAEEKTISSAMTQCYENYIIVDVGANLTNKKYSRDLDSVIQRAKDAGVQKIM 60

Query: 58  AIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD-EDYIDQLRDLVSN 108
             G+S++SSKEALRL RIYPG +YSTAG+HPH+AKSW+  D + +L  + +N
Sbjct: 61  VTGASIRSSKEALRLTRIYPGTLYSTAGVHPHDAKSWENPDTLQELESIANN 112

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791179|gb|EFZ15728.1| hypothetical protein SINV_14689 [Solenopsis invicta]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 83/97 (85%), Gaps = 2/97 (2%)

Query: 16  LTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI 75
           +T C++NY+++DVGANLTN+K+ RDL+SV+QRAKD+GVQKI+  G+S++SSKEALRL RI
Sbjct: 21  MTQCYENYIIVDVGANLTNKKYSRDLDSVIQRAKDAGVQKIMVTGTSIRSSKEALRLTRI 80

Query: 76  YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS 112
           YPG +YSTAG+HPH+AKSW+E   + LR+L S  GN 
Sbjct: 81  YPGTLYSTAGVHPHDAKSWEEP--NTLRELESIAGNP 115

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714187|ref|XP_003395613.1| PREDICTED: deoxyribonuclease tatD-like [Bombus terrestris]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 92/112 (82%), Gaps = 4/112 (3%)

Query: 1   MSESSSSNNNNEL---TKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII 57
           M+E+++++N  E    + +T C++NY+++DVGANLTN+K+ RDL+SV+QRAKD+GVQKI+
Sbjct: 1   MAENTTASNAEEKAISSAMTQCYENYIIVDVGANLTNKKYSRDLDSVIQRAKDAGVQKIM 60

Query: 58  AIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD-EDYIDQLRDLVSN 108
             G+S++SSKEALRL RIYPG +YSTAG+HPH+AKSW+  D + +L  + +N
Sbjct: 61  VTGASIRSSKEALRLTRIYPGTLYSTAGVHPHDAKSWENPDTLQELESIANN 112

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176271|gb|EFN65902.1| Deoxyribonuclease tatD [Camponotus floridanus]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 16  LTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI 75
           +T C++NY+++DVGANLTN+K+ RDL+SV+QRAKD+GVQKI+ IG+S++SSKEALRL RI
Sbjct: 1   MTQCYENYIIVDVGANLTNKKYSRDLDSVIQRAKDAGVQKIMVIGASIRSSKEALRLTRI 60

Query: 76  YPGMVYSTAGIHPHEAKSW-DEDYIDQLRDLVSN 108
           YPG +YSTAGIHPH+AKSW D D + +L  + +N
Sbjct: 61  YPGTLYSTAGIHPHDAKSWEDPDTLHELETIANN 94

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
FB|FBgn0038877	319	CG3308 [Drosophila melanogaste	0.479	0.257	0.658	1.2e-26
WB|WBGene00000795	286	crn-2 [Caenorhabditis elegans	0.502	0.300	0.441	5.3e-17
TIGR_CMR|CHY_2620	254	CHY_2620 "hydrolase, TatD fami	0.491	0.330	0.423	6.9e-15
UNIPROTKB|Q48AH8	270	tatD "Deoxyribonuclease TatD"	0.461	0.292	0.397	1e-13
TIGR_CMR|CPS_0167	270	CPS_0167 "deoxyribonuclease Ta	0.461	0.292	0.397	1e-13
TIGR_CMR|SO_4206	267	SO_4206 "hydrolase, TatD famil	0.421	0.269	0.430	2.3e-12
UNIPROTKB|P27859	260	tatD [Escherichia coli K-12 (t	0.403	0.265	0.414	7.9e-12
DICTYBASE|DDB_G0287397	670	DDB_G0287397 "TatD-related deo	0.403	0.102	0.391	1.9e-11
UNIPROTKB|Q48K23	278	tatD "Deoxyribonuclease TatD"	0.479	0.294	0.388	4.3e-11
DICTYBASE|DDB_G0269630	348	iliI "TatD-related DNase" [Dic	0.508	0.25	0.373	1.1e-10

FB|FBgn0038877 CG3308 [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/82 (65%), Positives = 74/82 (90%)

Query:    16 LTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI 75
             + +CF+N ++IDVGANLTN+K+ RDL+SVVQRA+D+GVQK++  G+S+KSSKEALRL+RI
Sbjct:    28 MKHCFENLIVIDVGANLTNKKYSRDLDSVVQRARDAGVQKLMVHGTSVKSSKEALRLSRI 87

Query:    76 YPGMVYSTAGIHPHEAKSWDED 97
             YP ++YSTAGIHPH++KS  E+
Sbjct:    88 YPDIIYSTAGIHPHDSKSIVEE 109

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

WB|WBGene00000795 crn-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 38/86 (44%), Positives = 56/86 (65%)

Query:    23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYS 82
             Y L+D+GANL +  + +DL  V+ RAK +G+ KI+  G+S K S E   L   YPG +Y 
Sbjct:     4 YELVDIGANLGHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECADLVEKYPGFLYF 63

Query:    83 TAGIHPHEAKSWDEDYIDQLRDLVSN 108
             TAG+HPH+AK W++  ++ L+ L  N
Sbjct:    64 TAGVHPHDAKDWNDGTLEALKKLQEN 89

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0004536 "deoxyribonuclease activity" evidence=IDA

TIGR_CMR|CHY_2620 CHY_2620 "hydrolase, TatD family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/85 (42%), Positives = 60/85 (70%)

Query:    24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYST 83
             +LID  A+L ++KF  D+E V++RA+ +GV+KII +G  L +S+EA+RL+  YP  +Y+ 
Sbjct:     1 MLIDSHAHLNDQKFKDDVEEVIKRARQNGVEKIITVGYDLPTSEEAVRLSEKYPE-IYAA 59

Query:    84 AGIHPHEAKSWDEDYIDQLRDLVSN 108
              GIHPH+AK+ ++    +L  L+ +
Sbjct:    60 VGIHPHDAKALNDQVFSRLEQLLDH 84

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|Q48AH8 tatD "Deoxyribonuclease TatD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 33/83 (39%), Positives = 57/83 (68%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIY----PGMV 80
             +ID+G NLTN++F +D E V++RA+ + +  ++  G+S+  S++AL L + Y    P  +
Sbjct:     1 MIDIGVNLTNKRFEKDREDVIRRAQKAQLDGLLITGTSVAESQKALALCQHYQTSFPDFL 60

Query:    81 YSTAGIHPHEAKSWDEDYIDQLR 103
             +STAG+HPH+A     DY++QL+
Sbjct:    61 FSTAGVHPHDADHVTADYLEQLK 83

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0006308 "DNA catabolic process" evidence=ISS

TIGR_CMR|CPS_0167 CPS_0167 "deoxyribonuclease TatD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 33/83 (39%), Positives = 57/83 (68%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIY----PGMV 80
             +ID+G NLTN++F +D E V++RA+ + +  ++  G+S+  S++AL L + Y    P  +
Sbjct:     1 MIDIGVNLTNKRFEKDREDVIRRAQKAQLDGLLITGTSVAESQKALALCQHYQTSFPDFL 60

Query:    81 YSTAGIHPHEAKSWDEDYIDQLR 103
             +STAG+HPH+A     DY++QL+
Sbjct:    61 FSTAGVHPHDADHVTADYLEQLK 83

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0006308 "DNA catabolic process" evidence=ISS

TIGR_CMR|SO_4206 SO_4206 "hydrolase, TatD family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 166 (63.5 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 31/72 (43%), Positives = 40/72 (55%)

Query:    26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG 85
             ID+  NL       D+  +VQ A D GV  +I IGS L  S  A++L + YP  +Y TAG
Sbjct:     5 IDIAVNLLGSALEPDIAQIVQAAADQGVSPLIVIGSDLTESAAAIQLCQNYPNQLYCTAG 64

Query:    86 IHPHEAKSWDED 97
             +HPH A  W  D
Sbjct:    65 VHPHHASLWQTD 76

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|P27859 tatD [Escherichia coli K-12 (taxid:83333)]

 Score = 161 (61.7 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 29/70 (41%), Positives = 48/70 (68%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
             + D+G NLT+ +F +D + VV  A D+GV  ++  G++L+ S++A +LAR Y    +STA
Sbjct:     1 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSC-WSTA 59

Query:    85 GIHPHEAKSW 94
             G+HPH++  W
Sbjct:    60 GVHPHDSSQW 69

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA;IDA

GO:0004536 "deoxyribonuclease activity" evidence=IDA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

DICTYBASE|DDB_G0287397 DDB_G0287397 "TatD-related deoxyribonuclease" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
             +ID GANL NR    DL  V+ RAK   V  I+ I +  + S+ +++ +   PG +YS  
Sbjct:    56 IIDSGANLVNRHLENDLGRVIHRAKQQHVDAIVIITNDFEKSENSIKTSISNPGTIYSVV 115

Query:    85 GIHPHEAKS 93
             GIHP    S
Sbjct:   116 GIHPSNISS 124

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q48K23 tatD "Deoxyribonuclease TatD" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 156 (60.0 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM---VY 81
             LID+G NLTN  F    ++V+ RA  +GV++++  G+S++ S+ AL+L          ++
Sbjct:     3 LIDIGVNLTNASFASQRQAVLDRAYAAGVEQLVVTGTSVEGSEHALQLCHELDESAQRLF 62

Query:    82 STAGIHPHEAKSWDEDYIDQLRDLV 106
              TAGIHPH A  W  D   QL  L+
Sbjct:    63 CTAGIHPHSASDWTGDTEKQLHALL 87

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0006308 "DNA catabolic process" evidence=ISS

DICTYBASE|DDB_G0269630 iliI "TatD-related DNase" [Dictyostelium discoideum (taxid:44689)]

 Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 37/99 (37%), Positives = 60/99 (60%)

Query:    25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLA---RIYPGMV- 80
             +ID+GANL ++ F RD++ +++R  + GV KII  G+S+KSS +A++L    +   G+V 
Sbjct:    62 IIDIGANLADKSFERDIDQILERGYNKGVTKIIITGTSVKSSIKAIQLIESNKRKKGLVE 121

Query:    81 -YSTAGIHPHEAKSW-------DEDYIDQLRDLVSNTGN 111
              +ST G+HPH A+          E   D+LR L+ +  N
Sbjct:   122 LFSTVGVHPHSAEETLKMNGGSGEKAQDELRQLIKSNLN 160

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.21	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	171
PRK10425	258	PRK10425, PRK10425, DNase TatD; Provisional	1e-22
cd01310	251	cd01310, TatD_DNAse, TatD like proteins; E	1e-22
COG0084	256	COG0084, TatD, Mg-dependent DNase [DNA replication	3e-22
pfam01026	255	pfam01026, TatD_DNase, TatD related DNase	4e-22
TIGR00010	252	TIGR00010, TIGR00010, hydrolase, TatD family	2e-16
PRK11449	258	PRK11449, PRK11449, putative deoxyribonuclease Yjj	5e-05

>gnl|CDD|182449 PRK10425, PRK10425, DNase TatD; Provisional

 Score = 90.5 bits (225), Expect = 1e-22
 Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 27  DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGI 86
           D+G NLT+ +F +D + VV RA  +GV  ++  G++L+ S++A +LAR YP   +STAG+
Sbjct: 3   DIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPS-CWSTAGV 61

Query: 87  HPHEAKSWDEDYIDQLRDL 105
           HPH++  W     + + +L
Sbjct: 62  HPHDSSQWQAATEEAIIEL 80

Length = 258

>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E

 Score = 89.9 bits (224), Expect = 1e-22
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           LID   +L   +F  D + V+ RA+++GV KII +G+ LKSSK AL LA+ Y   VY+  
Sbjct: 1   LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYD-NVYAAV 59

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSN 108
           G+HPH+A    ++ +D L  L +N
Sbjct: 60  GLHPHDADEHVDEDLDLLELLAAN 83

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. Length = 251

>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]

 Score = 89.2 bits (222), Expect = 3e-22
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           LID   +L   +F  D + V+ RA+++GV+K++ +G+ L+  K AL LA  YP  VY+  
Sbjct: 3   LIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPN-VYAAV 61

Query: 85  GIHPHEAKSWDEDYIDQLRDLV 106
           G+HP +A    E+ +++L  L 
Sbjct: 62  GVHPLDADEHSEEDLEELEQLA 83

Length = 256

>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase

 Score = 88.9 bits (221), Expect = 4e-22
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query: 26  IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG 85
           ID   +L  + F  D + V++RA+++GV  ++ +G+ L+    AL LAR YPG VY+  G
Sbjct: 1   IDAHCHLDFKDFDEDRDEVIERAREAGVTAVVVVGTDLEDFLRALELARKYPGKVYAAVG 60

Query: 86  IHPHEAKSWDEDYIDQLRDL 105
           +HPHEA    E+ ++ L  L
Sbjct: 61  VHPHEADEASEEVLEALEKL 80

This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme. Length = 255

>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           LID   +L    F  D+E V++RAK +GV  ++A+G+ L+    AL LA  YP  VY+  
Sbjct: 1   LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYP-NVYAAV 59

Query: 85  GIHPHEAKSWDEDYIDQLRDLV 106
           G+HP +     ++ I +L  L 
Sbjct: 60  GVHPLDVDDDTKEDIKELERLA 81

PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity [Unknown function, Enzymes of unknown specificity]. Length = 252

>gnl|CDD|171118 PRK11449, PRK11449, putative deoxyribonuclease YjjV; Provisional

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
            ID   +     F  D E+ +QRA  +GV KII   +  ++    L LA  Y  + Y+  
Sbjct: 5   FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPL-YAAL 63

Query: 85  GIHPHEAKSWDEDYIDQLR 103
           G+HP   +   +  +DQL+
Sbjct: 64  GLHPGMLEKHSDVSLDQLQ 82

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG0084	256	TatD Mg-dependent DNase [DNA replication, recombin	100.0
PRK10425	258	DNase TatD; Provisional	100.0
PRK10812	265	putative DNAse; Provisional	100.0
PRK11449	258	putative deoxyribonuclease YjjV; Provisional	100.0
PF01026	255	TatD_DNase: TatD related DNase The Pfam entry find	100.0
KOG3020|consensus	296		99.95
TIGR00010	252	hydrolase, TatD family. Several genomes have multi	99.93
cd01310	251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	99.92
COG1099	254	Predicted metal-dependent hydrolases with the TIM-	99.82
cd00530	293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	99.45
COG1831	285	Predicted metal-dependent hydrolase (urease superf	99.14
TIGR03583	365	EF_0837 probable amidohydrolase EF_0837/AHA_3915.	99.12
cd01295	422	AdeC Adenine deaminase (AdeC) directly deaminates	99.07
cd01292	275	metallo-dependent_hydrolases Superfamily of metall	98.42
cd01311	263	PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC)	98.38
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	97.85
cd01294	335	DHOase Dihydroorotase (DHOase) catalyzes the rever	97.56
cd01307	338	Met_dep_hydrolase_B Metallo-dependent hydrolases,	97.51
PRK09875	292	putative hydrolase; Provisional	97.46
PRK09237	380	dihydroorotase; Provisional	97.18
cd01317	374	DHOase_IIa Dihydroorotase (DHOase), subgroup IIa;	97.02
cd00375	567	Urease_alpha Urease alpha-subunit; Urease is a nic	97.01
TIGR01178	552	ade adenine deaminase. The family described by thi	96.92
PRK12394	379	putative metallo-dependent hydrolase; Provisional	96.91
PLN02795	505	allantoinase	96.75
PRK07369	418	dihydroorotase; Provisional	96.56
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	96.54
PRK13308	569	ureC urease subunit alpha; Reviewed	96.47
PRK09059	429	dihydroorotase; Validated	96.47
TIGR00857	411	pyrC_multi dihydroorotase, multifunctional complex	96.33
PRK13207	568	ureC urease subunit alpha; Reviewed	96.29
COG3618	279	Predicted metal-dependent hydrolase of the TIM-bar	96.27
cd01293	398	Bact_CD Bacterial cytosine deaminase and related m	96.18
PRK05985	391	cytosine deaminase; Provisional	96.04
PRK07583	438	cytosine deaminase-like protein; Validated	96.04
PRK10027	588	cryptic adenine deaminase; Provisional	96.04
PRK02382	443	dihydroorotase; Provisional	96.03
PLN02942	486	dihydropyrimidinase	96.02
cd01297	415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	95.98
PRK13985	568	ureB urease subunit beta; Provisional	95.92
PRK09357	423	pyrC dihydroorotase; Validated	95.91
TIGR01792	567	urease_alph urease, alpha subunit. This model desc	95.89
PRK09061	509	D-glutamate deacylase; Validated	95.83
PRK13206	573	ureC urease subunit alpha; Reviewed	95.8
PRK07627	425	dihydroorotase; Provisional	95.79
PRK13404	477	dihydropyrimidinase; Provisional	95.69
cd01302	337	Cyclic_amidohydrolases Cyclic amidohydrolases, inc	95.69
PRK13309	572	ureC urease subunit alpha; Reviewed	95.61
TIGR02967	401	guan_deamin guanine deaminase. This model describe	95.57
cd01298	411	ATZ_TRZ_like TRZ/ATZ family contains enzymes from	95.45
cd01315	447	L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas	95.44
PRK08392	215	hypothetical protein; Provisional	95.17
cd01314	447	D-HYD D-hydantoinases (D-HYD) also called dihydrop	95.17
PRK08323	459	phenylhydantoinase; Validated	95.07
TIGR00221	380	nagA N-acetylglucosamine-6-phosphate deacetylase.	94.87
TIGR00856	341	pyrC_dimer dihydroorotase, homodimeric type. This	94.87
PLN02599	364	dihydroorotase	94.87
PRK08417	386	dihydroorotase; Provisional	94.61
TIGR02033	454	D-hydantoinase D-hydantoinase. This model represen	94.57
PF02126	308	PTE: Phosphotriesterase family; InterPro: IPR00155	94.57
PRK10657	388	isoaspartyl dipeptidase; Provisional	94.36
COG2159	293	Predicted metal-dependent hydrolase of the TIM-bar	94.36
PLN02303	837	urease	94.31
PRK09060	444	dihydroorotase; Validated	94.26
PRK08123	270	histidinol-phosphatase; Reviewed	93.91
PRK09228	433	guanine deaminase; Provisional	93.88
PRK08203	451	hydroxydechloroatrazine ethylaminohydrolase; Revie	93.76
PRK06846	410	putative deaminase; Validated	93.58
PRK07328	269	histidinol-phosphatase; Provisional	93.54
PRK06189	451	allantoinase; Provisional	93.5
TIGR03178	443	allantoinase allantoinase. This enzyme carries out	93.46
PRK05451	345	dihydroorotase; Provisional	93.38
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	93.13
PRK08044	449	allantoinase; Provisional	93.01
COG1001	584	AdeC Adenine deaminase [Nucleotide transport and m	92.81
smart00481	67	POLIIIAc DNA polymerase alpha chain like domain. D	92.71
TIGR01975	389	isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i	92.39
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	92.31
PRK08393	424	N-ethylammeline chlorohydrolase; Provisional	92.24
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	92.02
PRK06886	329	hypothetical protein; Validated	91.9
cd01303	429	GDEase Guanine deaminase (GDEase). Guanine deamina	91.85
PRK00912	237	ribonuclease P protein component 3; Provisional	91.69
PRK03892	216	ribonuclease P protein component 3; Provisional	91.67
PRK06380	418	metal-dependent hydrolase; Provisional	91.66
cd01312	381	Met_dep_hydrolase_D Metallo-dependent hydrolases,	91.57
PRK07228	445	N-ethylammeline chlorohydrolase; Provisional	91.53
PF02811	175	PHP: PHP domain; InterPro: IPR004013 The PHP (Poly	91.39
PRK07572	426	cytosine deaminase; Validated	91.36
cd01316	344	CAD_DHOase The eukaryotic CAD protein is a trifunc	91.31
PRK07709	285	fructose-bisphosphate aldolase; Provisional	91.26
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	91.14
PRK05588	255	histidinol-phosphatase; Provisional	91.12
PRK07203	442	putative chlorohydrolase/aminohydrolase; Validated	91.01
PRK06038	430	N-ethylammeline chlorohydrolase; Provisional	90.99
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	90.98
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	90.73
cd01318	361	DHOase_IIb Dihydroorotase (DHOase), subgroup IIb;	90.44
PRK09248	246	putative hydrolase; Validated	90.27
TIGR00677	281	fadh2_euk methylenetetrahydrofolate reductase, euk	90.24
PRK08204	449	hypothetical protein; Provisional	89.73
cd01305	263	archeal_chlorohydrolases Predicted chlorohydrolase	89.66
PRK11170	382	nagA N-acetylglucosamine-6-phosphate deacetylase;	89.63
COG1735	316	Php Predicted metal-dependent hydrolase with the T	89.42
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	89.4
COG3964	386	Predicted amidohydrolase [General function predict	89.31
COG0044	430	PyrC Dihydroorotase and related cyclic amidohydrol	88.84
PRK09045	443	N-ethylammeline chlorohydrolase; Provisional	88.69
PRK06687	419	chlorohydrolase; Validated	88.42
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	88.15
PRK09432	296	metF 5,10-methylenetetrahydrofolate reductase; Pro	87.92
PRK02925	466	glucuronate isomerase; Reviewed	87.73
PRK08185	283	hypothetical protein; Provisional	87.64
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	87.48
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	87.46
PRK04250	398	dihydroorotase; Provisional	87.35
PRK07213	375	chlorohydrolase; Provisional	87.22
PF02614	462	UxaC: Glucuronate isomerase; InterPro: IPR003766 U	87.02
PRK13660	182	hypothetical protein; Provisional	86.98
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	86.7
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	86.7
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	86.65
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	86.59
TIGR01224	377	hutI imidazolonepropionase. This enzyme catalyzes	86.42
PRK09230	426	cytosine deaminase; Provisional	86.26
PRK05835	307	fructose-bisphosphate aldolase; Provisional	86.15
PRK01211	409	dihydroorotase; Provisional	86.04
COG1904	463	UxaC Glucuronate isomerase [Carbohydrate transport	85.99
PRK08609	570	hypothetical protein; Provisional	85.94
PRK07084	321	fructose-bisphosphate aldolase; Provisional	84.77
COG0402	421	SsnA Cytosine deaminase and related metal-dependen	83.96
PF14488	166	DUF4434: Domain of unknown function (DUF4434)	83.8
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	83.45
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	83.01
COG0685	291	MetF 5,10-methylenetetrahydrofolate reductase [Ami	82.37
PRK00369	392	pyrC dihydroorotase; Provisional	81.87
PF13594	68	Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1	81.85
cd01296	371	Imidazolone-5PH Imidazolonepropionase/imidazolone-	81.8
PRK09236	444	dihydroorotase; Reviewed	81.56
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	81.39
TIGR01856	253	hisJ_fam histidinol phosphate phosphatase HisJ fam	81.2

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]

Probab=100.00  E-value=9e-39  Score=257.32  Aligned_cols=147  Identities=24%  Similarity=0.399  Sum_probs=133.9

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL  102 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l  102 (171)
                      ||+|||||||+...|.+|+++++++|+++||..++++|++++++..+++++++||+ +|+++|+||+...+..++.++.|
T Consensus         1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~-v~~~~G~HP~~~~~~~~~~~~~l   79 (256)
T COG0084           1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPN-VYAAVGVHPLDADEHSEEDLEEL   79 (256)
T ss_pred             CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCC-eEEEEeeCCCccccccHHHHHHH
Confidence            68999999999988889999999999999999999999999999999999999996 89999999999334558899999


Q ss_pred             HHHhcc-CCeEEEe----cCCCCCC-cHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hc--CceEEEecCC
Q psy4673         103 RDLVSN-TGNSTMN----RYNSSQW-ITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LN--RHLWVHKDSS  165 (171)
Q Consensus       103 ~~~l~~-~~vvaIG----Dy~~~~~-~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~--~p~iiH~fsg  165 (171)
                      .+++.+ ++++|||    ||+|... .++.|+++|++||+||++     +||||+|++++++    ..  .++|+|||||
T Consensus        80 ~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsG  159 (256)
T COG0084          80 EQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSG  159 (256)
T ss_pred             HHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCC
Confidence            999985 9999999    9999766 688999999999999999     8999999998774    23  6799999999


Q ss_pred             Ccccc
Q psy4673         166 MMKEL  170 (171)
Q Consensus       166 ~~~el  170 (171)
                      +.+++
T Consensus       160 s~e~a  164 (256)
T COG0084         160 SAEEA  164 (256)
T ss_pred             CHHHH
Confidence            99875

>PRK10425 DNase TatD; Provisional

Probab=100.00  E-value=1.3e-37  Score=251.76  Aligned_cols=145  Identities=28%  Similarity=0.490  Sum_probs=130.9

Q ss_pred             eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      +|||||||+...|.+++++++++|+++||.+++++|+++++|.++++++++||+ +|+++|+|||++.++.++.++.|.+
T Consensus         1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~   79 (258)
T PRK10425          1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIE   79 (258)
T ss_pred             CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHH
Confidence            689999999888889999999999999999999999999999999999999997 8999999999988777778899999


Q ss_pred             HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cC-ceEEEecCCCcc
Q psy4673         105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NR-HLWVHKDSSMMK  168 (171)
Q Consensus       105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~-p~iiH~fsg~~~  168 (171)
                      ++.+++++|||    ||+++...++.|+++|++||+||.+     +||||+|++++++    .  .. ++|+|||+|+.+
T Consensus        80 ~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~~~  159 (258)
T PRK10425         80 LAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGTRE  159 (258)
T ss_pred             hccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCCHH
Confidence            88888899888    9998766788999999999999999     8999999998764    2  22 489999999988


Q ss_pred             cc
Q psy4673         169 EL  170 (171)
Q Consensus       169 el  170 (171)
                      ++
T Consensus       160 ~~  161 (258)
T PRK10425        160 EM  161 (258)
T ss_pred             HH
Confidence            75

>PRK10812 putative DNAse; Provisional

Probab=100.00  E-value=6e-37  Score=248.77  Aligned_cols=145  Identities=17%  Similarity=0.200  Sum_probs=127.9

Q ss_pred             cceEeeccCCCC---CCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHH
Q psy4673          23 YVLIDVGANLTN---RKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI   99 (171)
Q Consensus        23 ~~~iDtH~HL~~---~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~   99 (171)
                      |++|||||||+.   ..|..|+++++++|+++||..++++|+++++|.++++++++||+ ||+++|+|||++.+  +.++
T Consensus         1 ~~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~--~~~~   77 (265)
T PRK10812          1 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDN-VVFSCGVHPLNQDE--PYDV   77 (265)
T ss_pred             CceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCC-eEEEEEeCCCCCCC--hhHH
Confidence            678999999994   45677999999999999999999999999999999999999997 89999999999854  4568


Q ss_pred             HHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hcC---ceEEEec
Q psy4673         100 DQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LNR---HLWVHKD  163 (171)
Q Consensus       100 ~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~~---p~iiH~f  163 (171)
                      +.|++++.+++++|||    ||+++..+++.|+++|++||++|++     +||||+|++++++    .+.   ++|+|||
T Consensus        78 ~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~f  157 (265)
T PRK10812         78 EELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCF  157 (265)
T ss_pred             HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEee
Confidence            8899888888999988    9998767789999999999999999     7999999998663    222   4799999


Q ss_pred             CCCcccc
Q psy4673         164 SSMMKEL  170 (171)
Q Consensus       164 sg~~~el  170 (171)
                      +|+.+++
T Consensus       158 sG~~~~a  164 (265)
T PRK10812        158 TEDRETA  164 (265)
T ss_pred             cCCHHHH
Confidence            9998764

>PRK11449 putative deoxyribonuclease YjjV; Provisional

Probab=100.00  E-value=1.4e-36  Score=245.70  Aligned_cols=148  Identities=21%  Similarity=0.248  Sum_probs=131.0

Q ss_pred             ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHH
Q psy4673          22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQ  101 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~  101 (171)
                      +|.+||+||||+...|..++++++++|+++||..++++|+++++|.++++++++||+ +++++|+|||++.+..+..+++
T Consensus         2 ~~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~   80 (258)
T PRK11449          2 ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQ   80 (258)
T ss_pred             CceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHH
Confidence            456899999999888888999999999999999999999999999999999999997 8999999999998777778888


Q ss_pred             HHHHhc-cC-CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh----c--CceEEEecC
Q psy4673         102 LRDLVS-NT-GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL----N--RHLWVHKDS  164 (171)
Q Consensus       102 l~~~l~-~~-~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~----~--~p~iiH~fs  164 (171)
                      +++++. .+ +++|||    ||++....++.|+++|++||+||.+     +||||+|++++++.    +  .++|+|||+
T Consensus        81 l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fs  160 (258)
T PRK11449         81 LQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFS  160 (258)
T ss_pred             HHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCC
Confidence            888774 33 788888    9988666789999999999999999     89999999987642    2  358999999


Q ss_pred             CCcccc
Q psy4673         165 SMMKEL  170 (171)
Q Consensus       165 g~~~el  170 (171)
                      |+.+++
T Consensus       161 G~~~~a  166 (258)
T PRK11449        161 GSLQQA  166 (258)
T ss_pred             CCHHHH
Confidence            998765

>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition

Probab=100.00  E-value=8e-34  Score=229.03  Aligned_cols=145  Identities=25%  Similarity=0.417  Sum_probs=122.6

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL  105 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~  105 (171)
                      ||+||||+...+.++.+++++++.+.|+..++.+++++++|..+.++++++|..+++++|+|||++....++.++.|+++
T Consensus         1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l   80 (255)
T PF01026_consen    1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEEL   80 (255)
T ss_dssp             EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHH
T ss_pred             CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHH
Confidence            79999999966778999999999999999999999999999999999999998799999999999987667777888887


Q ss_pred             --hccCCeEEEe----cCCC-CCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hcC---ceEEEecCCC
Q psy4673         106 --VSNTGNSTMN----RYNS-SQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LNR---HLWVHKDSSM  166 (171)
Q Consensus       106 --l~~~~vvaIG----Dy~~-~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~~---p~iiH~fsg~  166 (171)
                        +..++++|||    ||++ +..+++.|+++|++||+||.+     +||||+|++++++    +..   ++|+|||+|+
T Consensus        81 ~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~  160 (255)
T PF01026_consen   81 INLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCFSGS  160 (255)
T ss_dssp             HHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT--S-
T ss_pred             HHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhccccceeEEEecCCCC
Confidence              7889998887    9965 577899999999999999999     8999999998874    332   5899999999


Q ss_pred             cccc
Q psy4673         167 MKEL  170 (171)
Q Consensus       167 ~~el  170 (171)
                      .+++
T Consensus       161 ~~~~  164 (255)
T PF01026_consen  161 PEEA  164 (255)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....

>KOG3020|consensus

Probab=99.95  E-value=5.6e-28  Score=196.73  Aligned_cols=152  Identities=30%  Similarity=0.483  Sum_probs=134.5

Q ss_pred             CCCccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHH-
Q psy4673          19 CFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDED-   97 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~-   97 (171)
                      +....++.|.|+|+.......+...++.+|...||..++.+|++.++++.+++++++||+.+++++|+|||++..+.+. 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~~~~~~~   91 (296)
T KOG3020|consen   12 NFTNPMLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQEFSDQS   91 (296)
T ss_pred             hhcchhhchhhhccccCCCCccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCCcccchhhcc
Confidence            3344489999999999888888899999999999999999999999999999999999767999999999999887663 


Q ss_pred             ----HHHHHHHHhcc---CCeEEEe----cCCCC-CCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh------
Q psy4673          98 ----YIDQLRDLVSN---TGNSTMN----RYNSS-QWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL------  154 (171)
Q Consensus        98 ----~~~~l~~~l~~---~~vvaIG----Dy~~~-~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~------  154 (171)
                          .++.|..++..   +++||||    ||.+. ..+.+.|+.+|++||+||.+     +||||.|++++++.      
T Consensus        92 ~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eIl~~~~~  171 (296)
T KOG3020|consen   92 RKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLP  171 (296)
T ss_pred             chhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhhHHHHHHHHHhcc
Confidence                78888888877   8999999    99886 78899999999999999999     89999999987643      


Q ss_pred             --cCceEEEecCCCcccc
Q psy4673         155 --NRHLWVHKDSSMMKEL  170 (171)
Q Consensus       155 --~~p~iiH~fsg~~~el  170 (171)
                        .+++++|||+|+.+++
T Consensus       172 ~~~~~vvvHsFtGs~e~~  189 (296)
T KOG3020|consen  172 ECHKKVVVHSFTGSAEEA  189 (296)
T ss_pred             ccCCceEEEeccCCHHHH
Confidence              2369999999998864

>TIGR00010 hydrolase, TatD family

Probab=99.93  E-value=8.2e-25  Score=174.32  Aligned_cols=144  Identities=23%  Similarity=0.334  Sum_probs=122.1

Q ss_pred             eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      |||+|||++...+..+++++++++..+|+..++.+++++.+++.+.++++++| .|++++|+||++.....+..++++++
T Consensus         1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~   79 (252)
T TIGR00010         1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELER   79 (252)
T ss_pred             CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHH
Confidence            68999999976554579999999999999999999999999999999999999 79999999999877655677889999


Q ss_pred             HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cCceEEEecCCCccc
Q psy4673         105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NRHLWVHKDSSMMKE  169 (171)
Q Consensus       105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~p~iiH~fsg~~~e  169 (171)
                      ++..++++|||    |++......+.|.++|++|+++|.+     ++||+++..++++    .  ...+|+|+|+|+.++
T Consensus        80 ~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~~~~~~~i~H~~~~~~~~  159 (252)
T TIGR00010        80 LAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREEKPKVGGVLHCFTGDAEL  159 (252)
T ss_pred             HccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence            98888898888    7765444467799999999999999     7999998766543    2  446899999887654

Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.

>cd01310 TatD_DNAse TatD like proteins; E

Probab=99.92  E-value=4.9e-24  Score=169.59  Aligned_cols=144  Identities=29%  Similarity=0.443  Sum_probs=123.1

Q ss_pred             eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      |||+|||++...+..+.+++++++.++||..++++++.+++++.+.+++++++. +++++|+||+++....+..++.+++
T Consensus         1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~-i~~~~G~hP~~~~~~~~~~~~~l~~   79 (251)
T cd01310           1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDN-VYAAVGLHPHDADEHVDEDLDLLEL   79 (251)
T ss_pred             CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCC-eEEEEeeCcchhhcCCHHHHHHHHH
Confidence            689999999865545789999999999999999999999999999999999985 8999999999987766677889999


Q ss_pred             HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cCceEEEecCCCccc
Q psy4673         105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NRHLWVHKDSSMMKE  169 (171)
Q Consensus       105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~p~iiH~fsg~~~e  169 (171)
                      ++..+.+++||    |+++...+.+.|.++|+.|+++|.+     ++||+++..++++    +  .+.+|+|+|+|+.++
T Consensus        80 ~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~  159 (251)
T cd01310          80 LAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYGPPKRGVFHCFSGSAEE  159 (251)
T ss_pred             HhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence            88877788887    8776545688999999999999999     7999998776653    3  356899999987643

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]

Probab=99.82  E-value=5.1e-20  Score=143.64  Aligned_cols=128  Identities=20%  Similarity=0.306  Sum_probs=101.8

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh----------hhHHHHHHH----HHhcCCcEEEEeeeCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL----------KSSKEALRL----ARIYPGMVYSTAGIHPH   89 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~----------~~~~~~~~l----~~~~~~~v~~~~GiHP~   89 (171)
                      |+||+|.|++...| +|    +.++..+||..+|.++-+|          ..|++++..    ++++.-.+++|+|+||.
T Consensus         1 ~~iD~HiH~d~r~~-eD----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr   75 (254)
T COG1099           1 MYIDSHIHLDVRGF-ED----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR   75 (254)
T ss_pred             CccccccccccccH-HH----HHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCC
Confidence            58999999998765 33    3667888999999888875          234554433    44554458999999999


Q ss_pred             CCCCCCHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCccc
Q psy4673          90 EAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKE  169 (171)
Q Consensus        90 ~~~~~~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~e  169 (171)
                      .++...+..+++|+.++.+..+||||....+..+ +..+++|+.||+||+             +++.|+|||++.+++.|
T Consensus        76 ~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t-~~E~evf~~QL~LA~-------------e~dvPviVHTPr~nK~e  141 (254)
T COG1099          76 AIPPELEEVLEELEELLSNEDVVAIGEIGLEEAT-DEEKEVFREQLELAR-------------ELDVPVIVHTPRRNKKE  141 (254)
T ss_pred             CCCchHHHHHHHHHhhcccCCeeEeeecccccCC-HHHHHHHHHHHHHHH-------------HcCCcEEEeCCCCcchh
Confidence            8876566788899999888899999976665444 348899999999999             99999999999999876


Q ss_pred             c
Q psy4673         170 L  170 (171)
Q Consensus       170 l  170 (171)
                      .
T Consensus       142 ~  142 (254)
T COG1099         142 A  142 (254)
T ss_pred             H
Confidence            4

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon

Probab=99.45  E-value=5.6e-13  Score=108.98  Aligned_cols=125  Identities=11%  Similarity=0.057  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----CCCHHHH-HHHHH-H---hcc
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAGIHPHEAK-----SWDEDYI-DQLRD-L---VSN  108 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~~~~~~~-~~l~~-~---l~~  108 (171)
                      ....++++..+||..++.++++  ..++..+++++++++-.+++++|+||+...     ....+.+ +.+.+ +   +..
T Consensus        34 ~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  113 (293)
T cd00530          34 AKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEG  113 (293)
T ss_pred             HHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCccChHHHhhCCHHHHHHHHHHHHHhcccc
Confidence            4556788999999999999986  468999999999988448999999998753     1111222 11221 2   223


Q ss_pred             C--CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh---hhHhHh----hhcC-c---eEEEec-CC
Q psy4673         109 T--GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK---NFSRKE----HLNR-H---LWVHKD-SS  165 (171)
Q Consensus       109 ~--~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~---a~~~~~----~~~~-p---~iiH~f-sg  165 (171)
                      +  ++++||    |+    ...+.|+++|++|+++|++     +||+|+   +.++++    +.+. |   ++.|+| ++
T Consensus       114 ~~i~~~~IGEigld~----~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~  189 (293)
T cd00530         114 TGIKAGIIKEAGGSP----AITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRND  189 (293)
T ss_pred             CCcCceEEEEeecCC----CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCC
Confidence            4  345566    65    2458899999999999999     799997   666654    3332 2   788999 56


Q ss_pred             Cccc
Q psy4673         166 MMKE  169 (171)
Q Consensus       166 ~~~e  169 (171)
                      +.++
T Consensus       190 ~~~~  193 (293)
T cd00530         190 DPDY  193 (293)
T ss_pred             CHHH
Confidence            5543

PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]

Probab=99.14  E-value=2.7e-10  Score=91.52  Aligned_cols=134  Identities=13%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             CccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC----------hhhHHHHHHH----H----HhcCCcEEE
Q psy4673          21 DNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS----------LKSSKEALRL----A----RIYPGMVYS   82 (171)
Q Consensus        21 ~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~----------~~~~~~~~~l----~----~~~~~~v~~   82 (171)
                      ..+.++|.|.|++...  ....+++++.+.+|-..++.+.-.          .+++.++.+.    +    +..+...|+
T Consensus         3 ~~~~v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~   80 (285)
T COG1831           3 YDIPVTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYA   80 (285)
T ss_pred             cccceecceeeecCCc--CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEE
Confidence            3567999999999753  367899999999999888776542          3456555432    2    234433699


Q ss_pred             EeeeCCCCCCC-----CC-HH-------HHHHHHHHhccCCeEEEecCCC-----CCCcHHHHHHHHHHHHHHhhHHHHh
Q psy4673          83 TAGIHPHEAKS-----WD-ED-------YIDQLRDLVSNTGNSTMNRYNS-----SQWITEIKQTLFTTFVDITALCEFC  144 (171)
Q Consensus        83 ~~GiHP~~~~~-----~~-~~-------~~~~l~~~l~~~~vvaIGDy~~-----~~~~~~~Q~~~F~~ql~lA~~~iH~  144 (171)
                      .+|+||-....     ++ ++       .++...+++.+.+++|||...+     ..+-++.-.++++.-+++|+     
T Consensus        81 vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~-----  155 (285)
T COG1831          81 VVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAK-----  155 (285)
T ss_pred             EeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhh-----
Confidence            99999965431     11 12       3445566777889999994433     22346777899999999999     


Q ss_pred             hhhhHhHhhhcCceEEEecCCCccc
Q psy4673         145 QKNFSRKEHLNRHLWVHKDSSMMKE  169 (171)
Q Consensus       145 r~a~~~~~~~~~p~iiH~fsg~~~e  169 (171)
                              +.+.|+++|+.+.+.++
T Consensus       156 --------dvdc~vqLHtes~~~~~  172 (285)
T COG1831         156 --------DVDCAVQLHTESLDEET  172 (285)
T ss_pred             --------cCCCcEEEecCCCChHH
Confidence                    99999999999988764

>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915

Probab=99.12  E-value=1.4e-10  Score=97.91  Aligned_cols=139  Identities=12%  Similarity=0.044  Sum_probs=87.5

Q ss_pred             ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEe-----eeCCC-CCCCC
Q psy4673          24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTA-----GIHPH-EAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~-----GiHP~-~~~~~   94 (171)
                      .+||+|||+...  .+..+++.   .+...||..++.+++ .+.+++...+++++++..+++++     |+||. .....
T Consensus        51 G~ID~H~H~~~~~~~~~~~~~~---~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~  127 (365)
T TIGR03583        51 GWIDDHTHCFPKSALYYDEPDE---IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADL  127 (365)
T ss_pred             CEEEeeeccCCCcccccCCHhH---hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhCh
Confidence            499999999842  23344443   356789998887665 67888888888888874466665     88874 44444


Q ss_pred             CHHHHHHHHHHhc-cC-CeEEEecCC-C---CCCcHHHHHHHHHHHHHHhhH----HHHhhhhhHh---Hhhhc--CceE
Q psy4673          95 DEDYIDQLRDLVS-NT-GNSTMNRYN-S---SQWITEIKQTLFTTFVDITAL----CEFCQKNFSR---KEHLN--RHLW  159 (171)
Q Consensus        95 ~~~~~~~l~~~l~-~~-~vvaIGDy~-~---~~~~~~~Q~~~F~~ql~lA~~----~iH~r~a~~~---~~~~~--~p~i  159 (171)
                      .+...+.+++++. .+ .++|++-+. .   .....+  -.-|.+|+..+..    ++||+.+..+   +++.-  -.++
T Consensus       128 ~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~--~~~~~~~l~~~~~~~pv~vH~~~a~~~~~~i~~~~~~g~~~  205 (365)
T TIGR03583       128 SNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIE--PLEIAKQIQQENLELPLMVHIGSAPPELDEILALMEKGDVL  205 (365)
T ss_pred             HHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcC--HHHHHHHHHHhcCCCcEEEEeCCCccCHHHHHHHhcCCCee
Confidence            4446677776665 35 377755111 0   001100  1125667776622    7999998754   44432  1379


Q ss_pred             EEecCCCc
Q psy4673         160 VHKDSSMM  167 (171)
Q Consensus       160 iH~fsg~~  167 (171)
                      .|+|+|+.
T Consensus       206 ~H~fng~~  213 (365)
T TIGR03583       206 THCFNGKP  213 (365)
T ss_pred             eeeecCCC
Confidence            99999987

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine

Probab=99.07  E-value=2e-09  Score=92.71  Aligned_cols=121  Identities=10%  Similarity=0.079  Sum_probs=85.4

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC------CChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC---
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG------SSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSW---   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~------~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~---   94 (171)
                      .+||+|+|+....+  +.+++.+.|...||..++...      ++++.++..++.++++|..+|.++   |..++..   
T Consensus        10 G~ID~H~Hi~~~~~--~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~---p~~vp~t~~e   84 (422)
T cd01295          10 GFIDAHLHIESSML--TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML---PSCVPATPFE   84 (422)
T ss_pred             CEEEccCCcCCCCC--ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC---CCcCCCCCCC
Confidence            58999999998643  556788888999999988864      678889999998888885466555   5543311   


Q ss_pred             ---CHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 ---DEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ---~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                         ..-.+++++++++.++++|+|   ||+.-..    ..+.|.+++++|+             +.++|+.+|+....
T Consensus        85 ~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v~~----~~~~l~~~i~~A~-------------~~g~~v~~Ha~g~~  145 (422)
T cd01295          85 TSGAELTAEDIKELLEHPEVVGLGEVMDFPGVIE----GDDEMLAKIQAAK-------------KAGKPVDGHAPGLS  145 (422)
T ss_pred             CCCCcCCHHHHHHHhcCCCCcEEEEeccCccccC----CcHHHHHHHHHHH-------------hCCCEEEEeCCCCC
Confidence               111367788888888999999   6653111    2236888999999             66666666665433

This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=98.42  E-value=1.8e-06  Score=68.01  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             eEeeccCCCCCCCC--------------------CCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCC
Q psy4673          25 LIDVGANLTNRKFG--------------------RDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPG   78 (171)
Q Consensus        25 ~iDtH~HL~~~~~~--------------------~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~   78 (171)
                      +||+|+|+....+.                    .+....+.++...||..++..+...      +.++...+.+++.|+
T Consensus         1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (275)
T cd01292           1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG   80 (275)
T ss_pred             CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence            58999998763221                    2356777889999999888766543      456777888887743


Q ss_pred             -cEEEEeeeCCCCCCCCCHHHHHHHHHHhcc---CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673          79 -MVYSTAGIHPHEAKSWDEDYIDQLRDLVSN---TGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus        79 -~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~---~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a  147 (171)
                       .++.+.|+++..... .+...+.+.+++..   ..+++|+ ...+...  ..+.+.|.+.+++|++     .+|+...
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~i~~H~~~~  156 (275)
T cd01292          81 IRVVLGLGIPGVPAAV-DEDAEALLLELLRRGLELGAVGLKLAGPYTAT--GLSDESLRRVLEEARKLGLPVVIHAGEL  156 (275)
T ss_pred             eeeEEeccCCCCcccc-chhHHHHHHHHHHHHHhcCCeeEeeCCCCCCC--CCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence             356667888754321 11222222233322   3466676 2222111  1245678888999995     4666543

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.

>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)

Probab=98.38  E-value=7e-06  Score=66.43  Aligned_cols=116  Identities=12%  Similarity=0.199  Sum_probs=72.7

Q ss_pred             eEeeccCCCCCCC------------CCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          25 LIDVGANLTNRKF------------GRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        25 ~iDtH~HL~~~~~------------~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .||||+|+....+            .-.++++++.++..||.+.|.+..+.  .+....++..+.+ +++...++++|..
T Consensus         2 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~-~r~~g~~~~~p~~   80 (263)
T cd01311           2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASN-GKARGGATVDPRT   80 (263)
T ss_pred             CEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhC-CCeEEEEEECCCC
Confidence            5899999986432            34688999999999999888776432  2344455555544 4577778888864


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe--cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN--RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG--Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      .   .   .++|+++ ..+.++||.  .......+    -..+.+.++.+.             ++++|+.+|+...
T Consensus        81 ~---~---~~~l~~~-~~~g~rGvRl~~~~~~~~~----~~~~~~~~~~~~-------------~~gl~v~~~~~~~  133 (263)
T cd01311          81 T---T---DAELKEM-HDAGVRGVRFNFLFGGVDN----KDELDEIAKRAA-------------ELGWHVQVYFDAV  133 (263)
T ss_pred             C---C---HHHHHHH-HHCCCeEEEEecccCCCCC----HHHHHHHHHHHH-------------HcCCEEEEEeCHh
Confidence            2   2   2455555 457899988  22211111    133455667777             5566666665443

This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=97.85  E-value=0.0001  Score=58.60  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC----C----------------hhhHHHHHHHHHhcCCcEEEEee
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS----S----------------LKSSKEALRLARIYPGMVYSTAG   85 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~----~----------------~~~~~~~~~l~~~~~~~v~~~~G   85 (171)
                      ||+|+|+..   .......+..+.+.++........    .                ....+...+...++|..+.+.++
T Consensus         1 ID~H~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~   77 (273)
T PF04909_consen    1 IDAHIHLPG---EWDPEERLPEMDKQGVDRQLASPEDLLVDMDVAGVDGADEVQASARGFNDWLVELAAKHPDRFIGFAA   77 (273)
T ss_dssp             EEEEEEEGG---GTCHHHHHHHHHHHTEEEEEEEHEEEEHCHHHGGHSHHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred             CcCcccCCC---CcCchhhhhHHHhcCCchhhcCHHHHHhhHhHhccchHHHHhhHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence            899999832   234555566666677654322111    1                01234455666777777777788


Q ss_pred             eCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCC-CCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673          86 IHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNS-SQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH  161 (171)
Q Consensus        86 iHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~-~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH  161 (171)
                      +.|...    ++..+++++.+.+.+++||+   .... ...+.. ..   ...+++|.             ++++|+.+|
T Consensus        78 ~~~~~~----~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~-~~---~~~~~~~~-------------~~~~pv~~H  136 (273)
T PF04909_consen   78 IPPPDP----EDAVEELERALQELGFRGVKLHPDLGGFDPDDPR-LD---DPIFEAAE-------------ELGLPVLIH  136 (273)
T ss_dssp             ETTTSH----HHHHHHHHHHHHTTTESEEEEESSETTCCTTSGH-CH---HHHHHHHH-------------HHT-EEEEE
T ss_pred             ecCCCc----hhHHHHHHHhccccceeeeEecCCCCccccccHH-HH---HHHHHHHH-------------hhccceeee
Confidence            888653    46889999999888898888   2222 111212 11   34458888             777777777


Q ss_pred             e
Q psy4673         162 K  162 (171)
Q Consensus       162 ~  162 (171)
                      +
T Consensus       137 ~  137 (273)
T PF04909_consen  137 T  137 (273)
T ss_dssp             E
T ss_pred             c
Confidence            4

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis

Probab=97.56  E-value=0.0013  Score=54.94  Aligned_cols=83  Identities=12%  Similarity=0.025  Sum_probs=52.7

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC------hhhH-HHHHHHHHhc-CCcEEEEeeeCCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS------LKSS-KEALRLARIY-PGMVYSTAGIHPHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~-~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~   95 (171)
                      .+||.|+|+-..   +++....+.|...| ..++.....      ++.. +...++++.+ +..+.+.+|+||....   
T Consensus         5 g~iD~h~h~~~~---~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---   77 (335)
T cd01294           5 RPDDMHLHLRDG---AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTENT---   77 (335)
T ss_pred             CcceeEecCCCc---hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccCCC---
Confidence            489999999863   67888889999999 887765432      2322 3334455665 4446666888876321   


Q ss_pred             HHHHHHHHHHhccCCeEEEe
Q psy4673          96 EDYIDQLRDLVSNTGNSTMN  115 (171)
Q Consensus        96 ~~~~~~l~~~l~~~~vvaIG  115 (171)
                        ..+++++++....++|+-
T Consensus        78 --~~~el~~~~~~~G~~g~K   95 (335)
T cd01294          78 --TPEELREAKKKGGIRGVK   95 (335)
T ss_pred             --CHHHHHHHHHhCCceEEE
Confidence              245666665443556654

In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.

>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=97.51  E-value=0.00046  Score=57.71  Aligned_cols=138  Identities=12%  Similarity=-0.045  Sum_probs=69.5

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHH-HHHhcCCcEEEE--eeeC----CCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALR-LARIYPGMVYST--AGIH----PHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~-l~~~~~~~v~~~--~GiH----P~~~~~~~   95 (171)
                      .+||+|+|+..... ++.+..-+.|...||..++..+. .+......++ +.+.....+++.  ++.|    |...++..
T Consensus        35 G~iD~H~H~~~~g~-~~~~~~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~  113 (338)
T cd01307          35 GWIDLHVHVYQGGT-RYGDRPDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPD  113 (338)
T ss_pred             CeEEeeecCCCCCc-ccCCCHhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChh
Confidence            49999999986432 11122334467789988886553 3333332122 222221112321  2222    22222222


Q ss_pred             HHHHHHHHHHhcc--CCeEEEe----cCC-CCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHh---hhc--Cce
Q psy4673          96 EDYIDQLRDLVSN--TGNSTMN----RYN-SSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKE---HLN--RHL  158 (171)
Q Consensus        96 ~~~~~~l~~~l~~--~~vvaIG----Dy~-~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~---~~~--~p~  158 (171)
                      ....+.+.+.+.+  ..+++|.    ... ...     ...-+++++++|++     ++||+.+..++.   +.-  ..+
T Consensus       114 ~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~-----~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g~~  188 (338)
T cd01307         114 NIDEDAVVAAAREYPDVIVGLKARASKSVVGEW-----GIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRGDV  188 (338)
T ss_pred             HCCHHHHHHHHHHCcCcEEEEEEEeeccccccc-----CCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCCCE
Confidence            2234555555532  3444433    111 111     11126688888888     799999865433   221  247


Q ss_pred             EEEecCCCc
Q psy4673         159 WVHKDSSMM  167 (171)
Q Consensus       159 iiH~fsg~~  167 (171)
                      ++|+|+|+.
T Consensus       189 ~~H~~~g~~  197 (338)
T cd01307         189 LTHCFNGKP  197 (338)
T ss_pred             EEeccCCCC
Confidence            999999976

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK09875 putative hydrolase; Provisional

Probab=97.46  E-value=0.0033  Score=52.05  Aligned_cols=130  Identities=15%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             CCccceEeeccCCCCC--CC-------CCCHHHHH---HHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEee
Q psy4673          20 FDNYVLIDVGANLTNR--KF-------GRDLESVV---QRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAG   85 (171)
Q Consensus        20 ~~~~~~iDtH~HL~~~--~~-------~~d~~~vl---~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~G   85 (171)
                      ++.+.++.+|=||...  .+       .++.+.++   .+.++.|+..+|.+++-  =.+-..+.+++++-.-.|.++-|
T Consensus         3 ~~~lG~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG   82 (292)
T PRK09875          3 FDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTG   82 (292)
T ss_pred             hhhCCcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCc
Confidence            4566788999998531  11       12344444   44677999988876642  13455666677775534788888


Q ss_pred             eCC-----CCCCCCCHHH-----HHHHHHHhc----cCCeE-EEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhH
Q psy4673          86 IHP-----HEAKSWDEDY-----IDQLRDLVS----NTGNS-TMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFS  149 (171)
Q Consensus        86 iHP-----~~~~~~~~~~-----~~~l~~~l~----~~~vv-aIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~  149 (171)
                      +|-     .+....+.++     +.+|.+.+.    ++.++ .|| ++..   -.+..+++|+++.+.+.          
T Consensus        83 ~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~---it~~E~kvl~Aaa~a~~----------  149 (292)
T PRK09875         83 YYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGK---ITPLEEKVFIAAALAHN----------  149 (292)
T ss_pred             CCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCC---CCHHHHHHHHHHHHHHH----------
Confidence            773     3333333222     334444444    23454 355 4422   23567899999999999          


Q ss_pred             hHhhhcCceEEEecCC
Q psy4673         150 RKEHLNRHLWVHKDSS  165 (171)
Q Consensus       150 ~~~~~~~p~iiH~fsg  165 (171)
                         +.+.|+++|+-.+
T Consensus       150 ---~TG~pi~~Ht~~~  162 (292)
T PRK09875        150 ---QTGRPISTHTSFS  162 (292)
T ss_pred             ---HHCCcEEEcCCCc
Confidence               7888888886554

>PRK09237 dihydroorotase; Provisional

Probab=97.18  E-value=0.0027  Score=53.88  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=71.4

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhc---CCcEEEEeeeC----CCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIY---PGMVYSTAGIH----PHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~---~~~v~~~~GiH----P~~~~~~~   95 (171)
                      .+||+|+|+.... .......-+.+...|+..++..+. .+...+...+.....   +-..|..++.+    |....+..
T Consensus        54 G~iD~H~H~~~~~-~~~~~~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~  132 (380)
T PRK09237         54 GWIDLHVHVYPGS-TPYGDEPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLE  132 (380)
T ss_pred             CEEEeeecCCCCC-CccCCCHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHh
Confidence            3999999997431 110012235567889998887654 444444444443322   21123323322    32111111


Q ss_pred             HHHHHHHHHHhcc-C-CeEEEe---cCCC-CCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh---HhHhhhcC--ceE
Q psy4673          96 EDYIDQLRDLVSN-T-GNSTMN---RYNS-SQWITEIKQTLFTTFVDITAL-----CEFCQKNF---SRKEHLNR--HLW  159 (171)
Q Consensus        96 ~~~~~~l~~~l~~-~-~vvaIG---Dy~~-~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~---~~~~~~~~--p~i  159 (171)
                      ....+.+.+++.+ + .+++++   ++.. .....+    ..+....+|.+     .+||+++.   +++.++-.  .++
T Consensus       133 ~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~~~~~~----~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g~~~  208 (380)
T PRK09237        133 DIDADAVAEAVKRNPDFIVGIKARMSSSVVGDNGIE----PLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPGDIL  208 (380)
T ss_pred             HCCHHHHHHHHHhCcCcEEEEEEEEecccccccCCc----hHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCCCEE
Confidence            2245667777653 4 488888   3321 111111    12233333444     79998863   45554433  379


Q ss_pred             EEecCCCc
Q psy4673         160 VHKDSSMM  167 (171)
Q Consensus       160 iH~fsg~~  167 (171)
                      .|+|+|+.
T Consensus       209 ~H~~~~~~  216 (380)
T PRK09237        209 THCFNGKP  216 (380)
T ss_pred             EecCCCCC
Confidence            99999986

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=97.02  E-value=0.023  Score=48.23  Aligned_cols=119  Identities=15%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYPGM-VYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~   94 (171)
                      .+||.|+|+....  ..++.+...+.|...||..++.....      ++.+....+.+++.+.. +++..|+.++..   
T Consensus        15 G~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   91 (374)
T cd01317          15 GLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLK---   91 (374)
T ss_pred             CEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCC---
Confidence            4899999997643  24688888899999999988876532      34455555555544321 233355544421   


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                       ...++.+..+.. ..+.++.++.+...+..    .+.+-++.|+             +++.++++|+-+
T Consensus        92 -~~~~~~i~~l~~-~G~~~~k~~~~~~~~~~----~l~~~~~~~~-------------~~g~~v~~H~E~  142 (374)
T cd01317          92 -GEELTEIGELLE-AGAVGFSDDGKPIQDAE----LLRRALEYAA-------------MLDLPIIVHPED  142 (374)
T ss_pred             -cccHHHHHHHHH-CCcEEEEcCCcCCCCHH----HHHHHHHHHH-------------hcCCeEEEecCC
Confidence             123556666543 34556554433212222    2344457777             677777777744

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide

Probab=97.01  E-value=0.0073  Score=54.06  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-------------hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-------------KSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-------------~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.+       .+.|...||..++..|+.|             +.+.+.++.++..|-    -+|++-.-
T Consensus       130 G~ID~HvH~~~P~~-------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pi----n~g~~gkg  198 (567)
T cd00375         130 GGIDTHVHFICPQQ-------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPV----NIGFLGKG  198 (567)
T ss_pred             ceEECccCCCCccH-------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCc----eEEEEecC
Confidence            49999999865421       3667888999988854443             556666666665552    23333211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITA  139 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~  139 (171)
                      .    ...++.|.++++ ..+++++   ||..   +.    ..+.+-|+.|.
T Consensus       199 ~----~~~l~eL~e~~~-aGA~GfK~~eD~g~---t~----~~i~~aL~~A~  238 (567)
T cd00375         199 N----GSSPDALAEQIE-AGACGLKLHEDWGA---TP----AAIDTCLSVAD  238 (567)
T ss_pred             c----cccHHHHHHHHH-cCCEEEEecCCCCC---CH----HHHHHHHHHHH
Confidence            1    124566666653 3466666   5532   21    24556668888

Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.

>TIGR01178 ade adenine deaminase

Probab=96.92  E-value=0.011  Score=53.09  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=54.3

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE------eCCChhhHHHHHHHHHhcCCcEEEEeeeC-CCCCCCCCH
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA------IGSSLKSSKEALRLARIYPGMVYSTAGIH-PHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~------v~~~~~~~~~~~~l~~~~~~~v~~~~GiH-P~~~~~~~~   96 (171)
                      .+||+|+|+.....  ..+++.+.+-..|+..++.      .....+..+..++.+++.|-.+|.++..- |.-.-+...
T Consensus        51 G~ID~H~Hi~~~~~--~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g  128 (552)
T TIGR01178        51 GFIDAHIHIESSML--TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSG  128 (552)
T ss_pred             CeEecccccCCCCC--ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCC
Confidence            49999999986533  3445556677788877764      22345666666776666664444333211 210001111


Q ss_pred             H--HHHHHHHHhccCCeEEEe
Q psy4673          97 D--YIDQLRDLVSNTGNSTMN  115 (171)
Q Consensus        97 ~--~~~~l~~~l~~~~vvaIG  115 (171)
                      .  ..++++++++++.++++|
T Consensus       129 ~~~~~~~i~~~~~~~~V~glk  149 (552)
T TIGR01178       129 AVLTAEDIDELMELDEVLGLA  149 (552)
T ss_pred             CccCHHHHHHHHcCCCccEEE
Confidence            1  356778888888999999

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.

>PRK12394 putative metallo-dependent hydrolase; Provisional

Probab=96.91  E-value=0.012  Score=50.00  Aligned_cols=139  Identities=14%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             ceEeeccCCCCCCCC--CCHHHHHHHHHhcCCCEEEEeCCC----hhhHHHHHHHHHhcCCcEEEEeeeCCCCC---CC-
Q psy4673          24 VLIDVGANLTNRKFG--RDLESVVQRAKDSGVQKIIAIGSS----LKSSKEALRLARIYPGMVYSTAGIHPHEA---KS-   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~v~~~----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~---~~-   93 (171)
                      .+||+|+|+......  .+.+   ..+...|+..++..++.    .+.+.+....+++.+-+.+..+|.+.-..   .+ 
T Consensus        57 GliD~H~H~~~~g~~~~~~~~---~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~  133 (379)
T PRK12394         57 GLIDYHAHVFYDGTEGGVRPD---MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQEN  133 (379)
T ss_pred             CEEEeeecCCCCCcccccCHH---HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccc
Confidence            499999999653211  1222   22567899988887653    22233322223333333455555552111   01 


Q ss_pred             CCHH--HHHHHHHHhcc--CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh---HhHhhhc-C-ce
Q psy4673          94 WDED--YIDQLRDLVSN--TGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNF---SRKEHLN-R-HL  158 (171)
Q Consensus        94 ~~~~--~~~~l~~~l~~--~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~---~~~~~~~-~-p~  158 (171)
                      ....  ..+++++++..  +.+.+++ .+...... ..-.+.|.+.+++|++     .+|+..+.   .+++++- . .+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~g~~  212 (379)
T PRK12394        134 YDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDIA-EYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRRGDI  212 (379)
T ss_pred             cChhHCCHHHHHHHHHHCcCcEEEEEEEEeccccc-ccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCCCCE
Confidence            1111  13555665543  4555655 33221100 1125578889999996     57776542   2222321 1 25


Q ss_pred             EEEecCCC
Q psy4673         159 WVHKDSSM  166 (171)
Q Consensus       159 iiH~fsg~  166 (171)
                      +.|++.+.
T Consensus       213 ~~H~~~~~  220 (379)
T PRK12394        213 IAHAFHGK  220 (379)
T ss_pred             EEecCCCC
Confidence            66776644

>PLN02795 allantoinase

Probab=96.75  E-value=0.016  Score=51.38  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeC--CCh-hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHH
Q psy4673          24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIG--SSL-KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDED   97 (171)
Q Consensus        24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~--~~~-~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~   97 (171)
                      .+||+|+|+....+  .++.....+.+...||..++...  +.| .+....++...+. ....+.-+|+|+.... ....
T Consensus       100 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~~  178 (505)
T PLN02795        100 GLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVP-ENAH  178 (505)
T ss_pred             CEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccC-cchh
Confidence            39999999976432  24555666777778998877664  322 2333333322221 1123455788863222 2223


Q ss_pred             HHHHHHHHhccCCeEEE----e---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          98 YIDQLRDLVSNTGNSTM----N---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        98 ~~~~l~~~l~~~~vvaI----G---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      .++.+.++.+. .+++|    |   ++.+...    ....+.+-++.|+             ++++|+.+|+-+.+
T Consensus       179 ~~~~l~~~~~~-G~~g~k~f~~~~~~~~~~~~----~~~~l~~~~~~a~-------------~~g~~v~iH~E~~~  236 (505)
T PLN02795        179 NASVLEELLDA-GALGLKSFMCPSGINDFPMT----TATHIKAALPVLA-------------KYGRPLLVHAEVVS  236 (505)
T ss_pred             HHHHHHHHHHC-CCcEEEEEecccCCCCcccC----CHHHHHHHHHHHH-------------HhCCEEEEecCChh
Confidence            56666665432 23222    2   2211111    2345667778898             88888888887754

>PRK07369 dihydroorotase; Provisional

Probab=96.56  E-value=0.063  Score=46.47  Aligned_cols=120  Identities=11%  Similarity=0.078  Sum_probs=70.6

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~   94 (171)
                      .+||.|+|+..+.  ..++.....+.|...||..++....      +++.+....+.+++... .+....++-++...  
T Consensus        58 G~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~--  135 (418)
T PRK07369         58 GLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQG--  135 (418)
T ss_pred             CEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCC--
Confidence            4899999997643  3478888888899999988776542      24555555555554331 13333454443221  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                        ..++++.++. +..++++.+++.. .+..    .+.+-++.++             +.+.++.+|+-+..
T Consensus       136 --~~~~ei~~l~-~~Gv~~f~~~~~~-~~~~----~l~~~~~~~~-------------~~~~~v~~H~Ed~~  186 (418)
T PRK07369        136 --KQLTELAELA-AAGVVGFTDGQPL-ENLA----LLRRLLEYLK-------------PLGKPVALWPCDRS  186 (418)
T ss_pred             --ccHhhHHHHH-HCCCEEEECCCcC-CCHH----HHHHHHHHHH-------------hcCCeEEEecCChh
Confidence              2355555553 3346666543321 1222    3455557777             77888888886543

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=96.54  E-value=0.022  Score=47.24  Aligned_cols=42  Identities=17%  Similarity=0.103  Sum_probs=27.6

Q ss_pred             ceEeeccCCCCCCCCCC-------------HHHHHHHHHhcCCCEEEEeCCChhh
Q psy4673          24 VLIDVGANLTNRKFGRD-------------LESVVQRAKDSGVQKIIAIGSSLKS   65 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d-------------~~~vl~~a~~~gv~~~i~v~~~~~~   65 (171)
                      .+||+|+|+.......+             ...-++.+...||..+..++.....
T Consensus        14 GliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~   68 (342)
T cd01299          14 GLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYG   68 (342)
T ss_pred             CeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchH
Confidence            49999999965321111             1134567788999998888765433

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK13308 ureC urease subunit alpha; Reviewed

Probab=96.47  E-value=0.026  Score=50.64  Aligned_cols=106  Identities=17%  Similarity=0.277  Sum_probs=60.2

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe---------CCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI---------GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v---------~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      .+||+|+|+..+.+       .+.|...||..++.-         ...++.....++.++..|-    -+|++-.-. . 
T Consensus       134 G~ID~HVH~~~Pg~-------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pv----N~g~~gkG~-~-  200 (569)
T PRK13308        134 GAIDVHVHFDSAQL-------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPV----NFGFLGRGN-S-  200 (569)
T ss_pred             CEEEeeeCCCCccH-------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCc----cEEEEcCCc-c-
Confidence            48999999976421       266778899988862         2334556666666665552    233332111 1 


Q ss_pred             CHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                        ...+.|.++++ ..+++++   ||..   +.    ..+.+-|+.|.             +++.|+.+|+.+.
T Consensus       201 --s~~aeL~eli~-aGA~GfKi~ed~g~---t~----~~i~~aL~~A~-------------~~dv~VaiHadtl  251 (569)
T PRK13308        201 --SKPAALIEQVE-AGACGLKIHEDWGA---MP----AAIDTCLEVAD-------------EYDFQVQLHTDTL  251 (569)
T ss_pred             --cCHHHHHHHHH-CCCCEEeecCCCCC---CH----HHHHHHHHHHH-------------hcCCEEEEeCCCc
Confidence              12456666653 3466666   4321   21    35666778888             5555555555543

>PRK09059 dihydroorotase; Validated

Probab=96.47  E-value=0.075  Score=46.14  Aligned_cols=121  Identities=15%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~   94 (171)
                      .+||+|+|+....  ..++++...+.+...||..++.....      ++.+....+.++.. +-.+++..++.++...  
T Consensus        61 G~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~--  138 (429)
T PRK09059         61 GLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAG--  138 (429)
T ss_pred             cEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCC--
Confidence            4999999996432  23566666777888899887765432      23455555555432 2124555666654322  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                        +.++++..+. +..++++-++.....+..    .+.+-++.++             +.+.|+++|+-+.+
T Consensus       139 --~~l~e~~~l~-~~Gv~~f~~~~~~~~~~~----~l~~~~~~~~-------------~~~~~v~~H~E~~~  190 (429)
T PRK09059        139 --EEMTEFGLLR-AAGAVAFTDGRRSVANTQ----VMRRALTYAR-------------DFDAVIVHETRDPD  190 (429)
T ss_pred             --cchHHHHHHH-hcCcEEEecCCcccCCHH----HHHHHHHHHH-------------hcCCEEEEecCChh
Confidence              2355555543 334555543221111222    3344446677             78888888876543

>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type

Probab=96.33  E-value=0.055  Score=46.55  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-C-h----hhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-S-L----KSSKEALRLARIYPG-MVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~-~----~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~   94 (171)
                      .+||+|+|+....  ..+++......+...|+..++.... . +    +.+....+.++.... .+....|+......  
T Consensus        40 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~--  117 (411)
T TIGR00857        40 GFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQG--  117 (411)
T ss_pred             CEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCcc--
Confidence            3999999997421  2245666667788899988776532 2 2    223333333332111 13344555443211  


Q ss_pred             CHHHHHHHHHHhccCCeEE--EecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          95 DEDYIDQLRDLVSNTGNST--MNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vva--IGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                        ..++++.++. ...+++  .+++.....+..    .+.+-++.|+             +++.|+.+|+-..
T Consensus       118 --~~l~e~~~l~-~~Gv~g~~f~~~~~~~~~~~----~l~~~~~~a~-------------~~g~~v~iH~E~~  170 (411)
T TIGR00857       118 --KELTEAYELK-EAGAVGRMFTDDGSEVQDIL----SMRRALEYAA-------------IAGVPIALHAEDP  170 (411)
T ss_pred             --ccHHHHHHHH-HCCcEEEEEEeCCcccCCHH----HHHHHHHHHH-------------HcCCEEEEecCCH
Confidence              2345555554 335666  554332112222    3344458888             7888888886544

All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.

>PRK13207 ureC urease subunit alpha; Reviewed

Probab=96.29  E-value=0.045  Score=49.21  Aligned_cols=100  Identities=14%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh-------------hHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK-------------SSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~-------------~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+..       .+.|...||..++..++.|.             ...+.++.++..|-    -+|++--.
T Consensus       130 G~ID~HvH~~~P~~-------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pi----n~g~~g~g  198 (568)
T PRK13207        130 GGIDTHIHFICPQQ-------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPM----NIGFLGKG  198 (568)
T ss_pred             CeEECccCCccccH-------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCc----eEEEEcCC
Confidence            48999999875421       36677889999888654431             13333333333331    23333211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK  146 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~  146 (171)
                         . ...++.|+++++ ..+++|.   ||..   +.    ..+.+-|+.|.+     .+||+.
T Consensus       199 ---~-~~~~~~L~e~i~-aGA~gfKi~~d~g~---t~----~~l~~aL~~A~~~gv~V~iHa~t  250 (568)
T PRK13207        199 ---N-ASLPEALEEQIE-AGAIGLKLHEDWGA---TP----AAIDNCLSVADEYDVQVAIHTDT  250 (568)
T ss_pred             ---C-cccHHHHHHHHH-cCCCEEeecCCCCC---CH----HHHHHHHHHHHHhCCEEEEeCCC
Confidence               1 123566666653 3455666   5422   22    355666788884     466654

>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=96.27  E-value=0.045  Score=44.93  Aligned_cols=89  Identities=12%  Similarity=0.090  Sum_probs=59.1

Q ss_pred             CccceEeeccCCCCCCC--------------CCCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhcCCcEEEE-
Q psy4673          21 DNYVLIDVGANLTNRKF--------------GRDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIYPGMVYST-   83 (171)
Q Consensus        21 ~~~~~iDtH~HL~~~~~--------------~~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~~~~v~~~-   83 (171)
                      .++++||||.|+.+...              +-.+++.++.++..||.+.|.+-  .++.+.+..++..++.++ ...+ 
T Consensus         5 ~~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~-~~g~~   83 (279)
T COG3618           5 APQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAE-RHGGI   83 (279)
T ss_pred             ccccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHH-hhCce
Confidence            45679999999987531              12578899999999999866554  456688777777666654 2222 


Q ss_pred             eeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Q psy4673          84 AGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN  115 (171)
Q Consensus        84 ~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG  115 (171)
                      +|+==...+    +..++|++.. ++.++||-
T Consensus        84 vg~id~~~~----e~~a~L~~~~-~~~~~GvR  110 (279)
T COG3618          84 VGVIDECRP----EFAAKLERAR-YPFFRGVR  110 (279)
T ss_pred             EEEEecCCc----hHHHHHHHhc-ccccceee
Confidence            554332222    2566777765 77777765

>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases

Probab=96.18  E-value=0.13  Score=43.29  Aligned_cols=98  Identities=11%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             HHHHHhcCCCEEEEeCC-Ch----hhHHHHHHHHHhcCCcE-EEEeeeCCCCCCCCCHHHHHHHHHHhccC-CeEEEe-c
Q psy4673          45 VQRAKDSGVQKIIAIGS-SL----KSSKEALRLARIYPGMV-YSTAGIHPHEAKSWDEDYIDQLRDLVSNT-GNSTMN-R  116 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~-~~----~~~~~~~~l~~~~~~~v-~~~~GiHP~~~~~~~~~~~~~l~~~l~~~-~vvaIG-D  116 (171)
                      +.++...||..+...+. .+    ..++...++.+.+...+ +...++.|..... .++..+.++++.+.. .+++ | +
T Consensus       102 ~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~g~~~~~-~~~  179 (398)
T cd01293         102 LELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLS-TPGGEELMREALKMGADVVG-GIP  179 (398)
T ss_pred             HHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccC-CCCHHHHHHHHHHhCCCEEe-CCC
Confidence            56678889876543221 11    23445555555554322 2223444432111 123344555555432 2332 3 4


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673         117 YNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus       117 y~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a  147 (171)
                      +....   ....+.|++-+++|++     .+|++..
T Consensus       180 ~~~~~---~~s~e~l~~~~~~A~~~g~~v~~H~~e~  212 (398)
T cd01293         180 PAEID---EDGEESLDTLFELAQEHGLDIDLHLDET  212 (398)
T ss_pred             CCcCC---ccHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence            43211   2234567788899996     4666543

Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.

>PRK05985 cytosine deaminase; Provisional

Probab=96.04  E-value=0.22  Score=42.35  Aligned_cols=92  Identities=9%  Similarity=0.058  Sum_probs=42.7

Q ss_pred             HHHHHhcCCCEEE---E--eCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cC
Q psy4673          45 VQRAKDSGVQKII---A--IGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RY  117 (171)
Q Consensus        45 l~~a~~~gv~~~i---~--v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy  117 (171)
                      +.++...|+..+-   .  +...+..++..+++.+.+...+-.-+.-.|...........+.+++.++... -.+|  +.
T Consensus       104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~-~~~gg~~p  182 (391)
T PRK05985        104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGA-DVVGGLDP  182 (391)
T ss_pred             HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCC-CEEeCCCC
Confidence            4567788887642   2  2233456777777777765432222222232211111112344555554321 1233  32


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhH
Q psy4673         118 NSSQWITEIKQTLFTTFVDITAL  140 (171)
Q Consensus       118 ~~~~~~~~~Q~~~F~~ql~lA~~  140 (171)
                      +......+   +.+.+-+++|.+
T Consensus       183 ~~~~~~~~---~~l~~~~~~A~~  202 (391)
T PRK05985        183 AGIDGDPE---GQLDIVFGLAER  202 (391)
T ss_pred             CCcCCCHH---HHHHHHHHHHHH
Confidence            21111112   456666799995

>PRK07583 cytosine deaminase-like protein; Validated

Probab=96.04  E-value=0.09  Score=45.59  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=46.2

Q ss_pred             HHHHHHhcCCC---EEEEeCC--ChhhHHHHHHHHHhcCCcE-EEE---eeeCCCCCCCCCHHHHHHHHHHhccC-CeEE
Q psy4673          44 VVQRAKDSGVQ---KIIAIGS--SLKSSKEALRLARIYPGMV-YST---AGIHPHEAKSWDEDYIDQLRDLVSNT-GNST  113 (171)
Q Consensus        44 vl~~a~~~gv~---~~i~v~~--~~~~~~~~~~l~~~~~~~v-~~~---~GiHP~~~~~~~~~~~~~l~~~l~~~-~vva  113 (171)
                      .++.|...|+.   ..+.+..  .+..++.+.++.+.++..+ .-+   ++.|+....     ..++|.+.+... .+++
T Consensus       127 ~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~-----~~~eL~~~v~~~~gv~g  201 (438)
T PRK07583        127 GLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLTD-----AGERLADLVAEAGGLLG  201 (438)
T ss_pred             HHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccCc-----hHHHHHHHHHHcCCEEe
Confidence            33445556765   3333321  1445666667777776542 122   444444322     225566655433 3444


Q ss_pred             EecCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673         114 MNRYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK  146 (171)
Q Consensus       114 IGDy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~  146 (171)
                      .-+|... . .+   +.+.+-+++|.+     .+||..
T Consensus       202 ~~~~~~~-~-~d---~~l~~i~~lA~~~G~~v~vH~~E  234 (438)
T PRK07583        202 GVTYMNP-D-LD---AQLDRLFRLARERGLDLDLHVDE  234 (438)
T ss_pred             CCCCCCC-C-HH---HHHHHHHHHHHHhCCCcEEeECC
Confidence            1165432 1 12   346667789987     577743

>PRK10027 cryptic adenine deaminase; Provisional

Probab=96.04  E-value=0.042  Score=49.69  Aligned_cols=94  Identities=11%  Similarity=0.012  Sum_probs=57.4

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe------CCChhhHHHHHHHHHhcCCcEEEEe-eeCCCCC---CC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI------GSSLKSSKEALRLARIYPGMVYSTA-GIHPHEA---KS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v------~~~~~~~~~~~~l~~~~~~~v~~~~-GiHP~~~---~~   93 (171)
                      .|||+|+|+.....  ..+++.+.+-..|+..++..      -.+++..+..++.++.-|-.+|+.+ ..-|.-.   ..
T Consensus        85 GlIDaHvHiess~~--~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~  162 (588)
T PRK10027         85 GFIDAHLHIESSMM--TPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVN  162 (588)
T ss_pred             CeEeccccCCcccC--CHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccC
Confidence            49999999986533  55677777788898776661      1244556666666666664444433 1122211   00


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe---cCCC
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN---RYNS  119 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~  119 (171)
                      -..-..+.+.+++..++|+|+|   ||-.
T Consensus       163 Ga~~~~~~~~~~l~~~~v~glgEvMn~~~  191 (588)
T PRK10027        163 GASFTLEQMLAWRDHPQVTGLAEMMDYPG  191 (588)
T ss_pred             CCcCCHHHHHHHhcCCCceeEEeccCccc
Confidence            0012456777788899999999   6643

>PRK02382 dihydroorotase; Provisional

Probab=96.03  E-value=0.063  Score=46.66  Aligned_cols=118  Identities=19%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~   95 (171)
                      .+||+|+|+....  ..++++...+.+...||..++....      +++.+....+.+++..   +..+|+|-....   
T Consensus        55 G~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s---~v~~~~~~~~~~---  128 (443)
T PRK02382         55 GGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKS---IVDFGINGGVTG---  128 (443)
T ss_pred             CEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCc---eEEEEEEeeecc---
Confidence            4999999987532  2356677777888899988775433      2334555455444322   334555422111   


Q ss_pred             HHHHHHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          96 EDYIDQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        96 ~~~~~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                        .++.+..+... .++++|    .+........  -..+.+-++.|+             +.++|+.+|+-+.
T Consensus       129 --~~~~l~~l~~~-gv~~~gkv~~~~~~~~~~~~--~~~l~~~~~~a~-------------~~g~~v~~H~e~~  184 (443)
T PRK02382        129 --NWDPLESLWER-GVFALGEIFMADSTGGMGID--EELFEEALAEAA-------------RLGVLATVHAEDE  184 (443)
T ss_pred             --chhhHHHHHhc-CccceeEEEEEecCCCcccC--HHHHHHHHHHHH-------------hcCCeEEEecCCH
Confidence              23445555443 555554    1111111111  134556667787             7777777777654

>PLN02942 dihydropyrimidinase

Probab=96.02  E-value=0.094  Score=46.18  Aligned_cols=117  Identities=20%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCCC-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGSS-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      .+||+|+|+....    ..++...--..|-..|+..++.....     .+..+...+.+.+..    .-+|+|.-.. .+
T Consensus        58 G~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~-~~  132 (486)
T PLN02942         58 GGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC----MDYGFHMAIT-KW  132 (486)
T ss_pred             CEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC----CCEEEEEEec-CC
Confidence            3999999997641    23455555566788899877665322     222333333333222    1234442111 12


Q ss_pred             CHHHHHHHHHHhccCCeEEEe---cCCCCC-CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMN---RYNSSQ-WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIG---Dy~~~~-~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                      .+..++++.++.....+.+++   .+.... .+.    +.+.+-++.|+             +++.++.+|+
T Consensus       133 ~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~~~~----~~l~~~~~~a~-------------~~~~~v~~Ha  187 (486)
T PLN02942        133 DDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTD----ELLLEGFKRCK-------------SLGALAMVHA  187 (486)
T ss_pred             cHhHHHHHHHHHHhCCCceEEEEEecCCCCCCCH----HHHHHHHHHHH-------------hcCCeEEEEc
Confidence            222355666665544555554   332111 122    24666678898             7777777774

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

Probab=95.98  E-value=0.098  Score=45.02  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI   59 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v   59 (171)
                      .+||+|+|++...+.+.   ..+.+-..||..++..
T Consensus        54 G~iD~H~H~~~~~~~~~---~~~~a~~~GvTt~~~~   86 (415)
T cd01297          54 GFIDVHTHYDGQVFWDP---DLRPSSRQGVTTVVLG   86 (415)
T ss_pred             CEeeeeecCCcccccCc---chhhHHhCcEEEEEec
Confidence            49999999987443322   2344567789877763

>PRK13985 ureB urease subunit beta; Provisional

Probab=95.92  E-value=0.049  Score=48.85  Aligned_cols=109  Identities=18%  Similarity=0.164  Sum_probs=60.5

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhH--HHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----------KSS--KEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~--~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+..       ...|...||..++..++.|           ..|  .+.++.++.+|-    -+|++-.-
T Consensus       130 G~ID~HvH~~~P~~-------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pv----n~gf~gkG  198 (568)
T PRK13985        130 GGIDTHIHFISPQQ-------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM----NLGFLGKG  198 (568)
T ss_pred             CEEEeeCCCCCccH-------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCc----cEEEecCC
Confidence            48999999865321       2457888999888744433           232  555665565552    24444211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEecC-CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMNRY-NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy-~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                         .. ..++.|+++++ ..+++++++ .|. .+..    .+.+-|+.|.             +++.|+.+|+.+.+
T Consensus       199 ---~~-~~l~eL~el~~-aGA~GfK~~ed~g-~t~~----~I~~aL~vA~-------------~~dv~V~iHtdtln  252 (568)
T PRK13985        199 ---NS-SNDASLADQIE-AGAIGFKIHEDWG-TTPS----AINHALDVAD-------------KYDVQVAIHTDTLN  252 (568)
T ss_pred             ---cc-CCHHHHHHHHH-cCCEEEEECCccC-CCHH----HHHHHHHHHH-------------HcCCEEEEeCCCCC
Confidence               11 23556666653 346666622 121 2222    4455568888             66666666666554

>PRK09357 pyrC dihydroorotase; Validated

Probab=95.91  E-value=0.3  Score=41.93  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGM-VYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~   94 (171)
                      .+||+|+|+....  ..++.....+.+...||..++.... .+     +..+...+.++...-+ +++..++-.. ..  
T Consensus        54 G~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  130 (423)
T PRK09357         54 GLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKG-LA--  130 (423)
T ss_pred             CEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeC-CC--
Confidence            4999999986421  2355666667778899988776542 22     3344444444433211 2222222211 11  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                       ...++++..+.. .++++++++.....+    .+.+.+-+++|+             +++.|+.+|+-..
T Consensus       131 -~~~~~~~~~l~~-~gv~~~~~~~~~~~~----~~~l~~~~~~a~-------------~~g~~v~iH~ee~  182 (423)
T PRK09357        131 -GEELTEFGALKE-AGVVAFSDDGIPVQD----ARLMRRALEYAK-------------ALDLLIAQHCEDP  182 (423)
T ss_pred             -CccHHHHHHHHh-CCcEEEECCCcccCC----HHHHHHHHHHHH-------------hcCCEEEEeCCCH
Confidence             123445555433 456666643211112    135666778998             7888888887654

>TIGR01792 urease_alph urease, alpha subunit

Probab=95.89  E-value=0.06  Score=48.43  Aligned_cols=106  Identities=17%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-----------hhhH--HHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS-----------LKSS--KEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~-----------~~~~--~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.       ..+.|...||..++..|+.           ...|  .+.++.+++.+-    -+|+++.-
T Consensus       129 GlIDtHvH~~~P~-------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~i----n~g~~g~g  197 (567)
T TIGR01792       129 GGIDTHVHYISPQ-------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPI----NFGFTGKG  197 (567)
T ss_pred             CeEEeecCCCCcc-------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCc----cEEEEeCC
Confidence            4999999986532       2466778899888885542           1223  223344444442    25555421


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ..    ...+.|.++++ ..+++++   ||.-   +    -+.+.+-+++|.             +++.|+.+|+-+.
T Consensus       198 ~~----~~~~~L~e~i~-aGa~gfK~h~~y~~---s----~e~L~~al~~A~-------------e~gv~V~iH~ET~  250 (567)
T TIGR01792       198 SG----SGPAALIEQIE-AGACGLKVHEDWGA---T----PAAIDNALSVAD-------------EYDVQVAVHTDTL  250 (567)
T ss_pred             cc----chHHHHHHHHH-cCCcEEEeCCCCCC---C----HHHHHHHHHHHH-------------HcCCEEEEeCCCc
Confidence            11    13455665554 3466777   4422   2    225666678999             7788888887443

This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.

>PRK09061 D-glutamate deacylase; Validated

Probab=95.83  E-value=0.17  Score=44.94  Aligned_cols=46  Identities=9%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhc---cCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673          96 EDYIDQLRDLVS---NTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK  146 (171)
Q Consensus        96 ~~~~~~l~~~l~---~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~  146 (171)
                      .++++++.+++.   +..+.+|+   +|... .+.+    .+.+-++.|++     .+|++.
T Consensus       165 ~~el~~m~~ll~~al~~Ga~gis~~~~y~p~-~~~~----eL~~l~~~A~~~g~~v~~H~e~  221 (509)
T PRK09061        165 PAELAEILELLEQGLDEGALGIGIGAGYAPG-TGHK----EYLELARLAARAGVPTYTHVRY  221 (509)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEecCCccCCC-CCHH----HHHHHHHHHHHcCCEEEEEecC
Confidence            456777777765   45677776   45432 2223    24445588885     467775

>PRK13206 ureC urease subunit alpha; Reviewed

Probab=95.80  E-value=0.078  Score=47.74  Aligned_cols=109  Identities=12%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhHH--HHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----------KSSK--EALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~~--~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.       ..+.|...||..++..++.+           ..|.  +.++.++..|    .-+|+|-. 
T Consensus       136 G~ID~HVH~~~Pg-------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~p----vn~g~~g~-  203 (573)
T PRK13206        136 GAIDCHVHFICPQ-------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWP----VNVALLGK-  203 (573)
T ss_pred             CEEeeeeccCCch-------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCc----eeEEEecC-
Confidence            4899999987542       12667788999888643332           2232  4444333333    22344321 


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEecC-CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMNRY-NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy-~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      .....   .+.|.+++ +..+++++++ .|. .+..    .+.+-++.|.             +++.|+.+|+.+.+
T Consensus       204 g~~~~---~~~L~el~-~aGA~GfKi~~d~g-~t~~----~i~~aL~~A~-------------~~gv~V~iHadtln  258 (573)
T PRK13206        204 GNTVS---AEALWEQL-RGGAGGFKLHEDWG-STPA----AIDACLRVAD-------------AAGVQVALHSDTLN  258 (573)
T ss_pred             cCcCC---HHHHHHHH-HCCCcEEeecCccC-CCHH----HHHHHHHHHH-------------HhCCEEEEECCCcc
Confidence            11222   33555554 3456777733 121 2222    4555568888             66666666665544

>PRK07627 dihydroorotase; Provisional

Probab=95.79  E-value=0.2  Score=43.39  Aligned_cols=121  Identities=14%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~   95 (171)
                      .+||.|+|+..+.  ..++++...+.|...||..++.....      .+..+......+.... +.. ++++|-... ..
T Consensus        56 G~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g-~~  132 (425)
T PRK07627         56 GLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQ-AHV-YPLGALTVG-LK  132 (425)
T ss_pred             cEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCc-eeE-EEeCeEEcC-CC
Confidence            3899999996432  34678888888899999887754322      2223333333333222 222 334443221 12


Q ss_pred             HHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          96 EDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        96 ~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ...++++.++.+ ..++++-++.+...+..    .+.+-++.++             +.+.++.+|+-+.
T Consensus       133 ~~~~~~i~~l~~-~G~~~fk~~~~~~~~~~----~l~~~~~~~~-------------~~~~~v~~H~E~~  184 (425)
T PRK07627        133 GEVLTEMVELTE-AGCVGFSQANVPVVDTQ----VLLRALQYAS-------------TFGFTVWLRPLDA  184 (425)
T ss_pred             ccCHHHHHHHHh-CCEEEEEcCCcccCCHH----HHHHHHHHHH-------------hcCCEEEEecCCh
Confidence            234666666543 34555555433222222    2444456677             7788888887764

>PRK13404 dihydropyrimidinase; Provisional

Probab=95.69  E-value=0.36  Score=42.46  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=65.8

Q ss_pred             ceEeeccCCCCC-----CCCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCC
Q psy4673          24 VLIDVGANLTNR-----KFGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWD   95 (171)
Q Consensus        24 ~~iDtH~HL~~~-----~~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~   95 (171)
                      .+||+|+|+...     .+.+++......+...||..++..+.+  +....+.++.... .....+..+|+|-.-. ...
T Consensus        55 G~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~-~~~  133 (477)
T PRK13404         55 GGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVA-DPT  133 (477)
T ss_pred             CEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEec-CCC
Confidence            499999999542     234677777788889999988775432  2333333322211 1111234456663221 112


Q ss_pred             HHHH-HHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          96 EDYI-DQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        96 ~~~~-~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++.+ +++.++++. .+.+|.   ++.....+.    ..+.+-++.|.             ++++++.+|+-+.
T Consensus       134 ~~~~~~~v~~l~~~-G~~~iKi~~~~~~~~~~~----~~l~~~~~~a~-------------~~g~~V~~Hae~~  189 (477)
T PRK13404        134 EEVLTEELPALIAQ-GYTSFKVFMTYDDLKLDD----RQILDVLAVAR-------------RHGAMVMVHAENH  189 (477)
T ss_pred             hhhHHHHHHHHHHc-CCCEEEEEecCCCCCCCH----HHHHHHHHHHH-------------hcCCEEEEEeCCH
Confidence            2233 466666543 333333   321111111    34556668888             7888888887653

>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

Probab=95.69  E-value=0.2  Score=42.01  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=28.4

Q ss_pred             ceEeeccCCCCCC---CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK---FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~---~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||.|+|+..+.   ..++++.--+.|..-||..++...
T Consensus         6 G~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp   45 (337)
T cd01302           6 GFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP   45 (337)
T ss_pred             CeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC
Confidence            4899999997644   336777777888889998877643

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.

>PRK13309 ureC urease subunit alpha; Reviewed

Probab=95.61  E-value=0.08  Score=47.73  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=59.3

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-------------hhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS-------------LKSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~-------------~~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.+       ...|...||..++..+++             +..+.+.++.++..|-.    +|++---
T Consensus       134 G~ID~HvH~~~P~~-------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn----~g~~gkg  202 (572)
T PRK13309        134 AGIDTHIHLISPQQ-------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVN----VGILGKG  202 (572)
T ss_pred             CEEEeecccCCcch-------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcC----EEEEcCC
Confidence            48999999876432       246778899888853332             22455665656655522    3333111


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                         .. ...+.|.+++ +..+++++   ||..   +..    .+.+-++.|.             +++.++.+|+.+.+
T Consensus       203 ---~~-~~~~~l~el~-~aGa~gfk~~~d~g~---t~~----~L~~aLe~A~-------------~~gv~VaiH~d~ln  256 (572)
T PRK13309        203 ---NS-YGRGPLLEQA-IAGVAGYKVHEDWGA---TAA----ALRHALRVAD-------------EVDIQVAVHTDSLN  256 (572)
T ss_pred             ---CC-CCHHHHHHHH-hcCcEEEEecCcCCc---CHH----HHHHHHHHHH-------------hcCCEEEEeCCccc
Confidence               11 1234455554 34566776   5422   222    4555568888             66666666666554

>TIGR02967 guan_deamin guanine deaminase

Probab=95.57  E-value=0.57  Score=39.90  Aligned_cols=37  Identities=8%  Similarity=0.023  Sum_probs=22.5

Q ss_pred             HHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEE
Q psy4673          46 QRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYS   82 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~   82 (171)
                      .++-..|+..+...+. .+..+....+.+.+.+-+++.
T Consensus        97 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~  134 (401)
T TIGR02967        97 DELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIA  134 (401)
T ss_pred             HHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEE
Confidence            4677889988776553 344555566666665434433

This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.

>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases

Probab=95.45  E-value=0.28  Score=41.41  Aligned_cols=11  Identities=18%  Similarity=0.268  Sum_probs=9.3

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|++.
T Consensus        57 Glid~H~Hl~~   67 (411)
T cd01298          57 GLVNTHTHLAM   67 (411)
T ss_pred             Cccccccchhh
Confidence            39999999963

Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.

>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

Probab=95.44  E-value=0.27  Score=42.51  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||+|+|+....  ..+++...-+.|...||..++...
T Consensus        53 G~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p   91 (447)
T cd01315          53 GLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMP   91 (447)
T ss_pred             cEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCC
Confidence            3999999997532  234566666778889998887764

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.

>PRK08392 hypothetical protein; Provisional

Probab=95.17  E-value=0.48  Score=37.15  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----hh----HHHHHHHHHhcCCcE----------------
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----KS----SKEALRLARIYPGMV----------------   80 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----~~----~~~~~~l~~~~~~~v----------------   80 (171)
                      ||.|+|-....-...+++++++|.+.|+.. +.++-..     .+    +..+.++.+++.-.|                
T Consensus         1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~-i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~~~~~   79 (215)
T PRK08392          1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRL-VGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDIT   79 (215)
T ss_pred             CccccCCCCcCCcCCHHHHHHHHHHcCCCE-EEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCCcchhH
Confidence            689999876433457899999999999975 4444321     12    222333333211001                


Q ss_pred             --------EEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673          81 --------YSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RYNSSQWITEIKQTLFTTFVDITAL  140 (171)
Q Consensus        81 --------~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy~~~~~~~~~Q~~~F~~ql~lA~~  140 (171)
                              |...++|-+......+...+.+.+.+..+.+--+|  |+........ ..+.+.+-++.|.+
T Consensus        80 ~~~~~~~D~vI~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~-~~~~~~~i~~~~~~  148 (215)
T PRK08392         80 DDFAKKLDYVIASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYP-SEEELKEILDLAEA  148 (215)
T ss_pred             HHHHhhCCEEEEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCc-hHHHHHHHHHHHHH
Confidence                    33456674322111234566666667677777788  7543211111 13445666777775

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

Probab=95.17  E-value=0.22  Score=42.99  Aligned_cols=120  Identities=24%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCC-Ch-hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGS-SL-KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~-~~-~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||+|+|+....    ..++.....+.+...||..++.... .+ ....+.++..... ....+.-+|+|+... ...+
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~  130 (447)
T cd01314          52 GGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIIT-DWTD  130 (447)
T ss_pred             CEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeec-CCCh
Confidence            4999999996421    2244544456677789988777542 23 4444444332221 111223355664322 2223


Q ss_pred             HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673          97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                      +.++.+++++.. .+.+|.   ..... ..+.+    .+.+-+++|+             ++++++.+|+
T Consensus       131 ~~~~~~~~l~~~-g~~~ik~~~~~~~~~~~s~~----~l~~~~~~a~-------------~~g~~v~~H~  182 (447)
T cd01314         131 SVIEELPELVKK-GISSFKVFMAYKGLLMVDDE----ELLDVLKRAK-------------ELGALVMVHA  182 (447)
T ss_pred             HHHHHHHHHHHc-CCCEEEEEeccCCCCCCCHH----HHHHHHHHHH-------------hcCCeEEEEc
Confidence            456666666553 222222   11111 11222    4555668888             6677777775

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.

>PRK08323 phenylhydantoinase; Validated

Probab=95.07  E-value=0.28  Score=42.48  Aligned_cols=121  Identities=21%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .|||+|+|+...    ...++.....+.+...||..++......  ......++..... ......-+|+|.... ....
T Consensus        50 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~  128 (459)
T PRK08323         50 GGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIIT-DWNE  128 (459)
T ss_pred             cEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEec-CCcH
Confidence            499999999642    1234555555677789999877654322  2333333322211 111234567764322 1233


Q ss_pred             HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673          97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                      +.++++++++... +.+|.   .+... ..+.+    .+.+-++.|.             +++.++.+|+-
T Consensus       129 ~~~~~~~~~~~~g-~~~ik~~~~~~~~~~~s~~----~l~~~~~~a~-------------~~g~~v~~H~e  181 (459)
T PRK08323        129 VVLDEMPELVEEG-ITSFKLFMAYKGALMLDDD----ELLRALQRAA-------------ELGALPMVHAE  181 (459)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEEecCCCCCCCHH----HHHHHHHHHH-------------hcCCEEEEEcC
Confidence            4567777776432 22332   32211 11222    2445568888             66777777753

>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase

Probab=94.87  E-value=0.31  Score=41.78  Aligned_cols=141  Identities=12%  Similarity=0.123  Sum_probs=71.0

Q ss_pred             ceEeeccCCCCC-CCC----CCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhc--CCcEEEEeeeC---CCCC
Q psy4673          24 VLIDVGANLTNR-KFG----RDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIY--PGMVYSTAGIH---PHEA   91 (171)
Q Consensus        24 ~~iDtH~HL~~~-~~~----~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~--~~~v~~~~GiH---P~~~   91 (171)
                      .|||+|+|.... .+.    ++++...+.+...||..++...  ..++...+.++...++  ...-..-+|+|   |...
T Consensus        57 GfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~  136 (380)
T TIGR00221        57 GFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLS  136 (380)
T ss_pred             ceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCC
Confidence            499999997531 121    4566777888889998766433  3345555554433221  10112357888   5433


Q ss_pred             CC----CCHH-----HHHHHHHHhcc-C---CeEEEecCCCCCCcHHHHHHHHHHH-HHHhhHHHHhhhhhHhHh---hh
Q psy4673          92 KS----WDED-----YIDQLRDLVSN-T---GNSTMNRYNSSQWITEIKQTLFTTF-VDITALCEFCQKNFSRKE---HL  154 (171)
Q Consensus        92 ~~----~~~~-----~~~~l~~~l~~-~---~vvaIGDy~~~~~~~~~Q~~~F~~q-l~lA~~~iH~r~a~~~~~---~~  154 (171)
                      .+    .+++     ..++++++++. .   +++-+-   .+......-.+.+..| +..+  +=|+--.|+++.   +.
T Consensus       137 ~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlA---PE~~~~~~~i~~l~~~gi~vs--~GHs~A~~~~~~~a~~~  211 (380)
T TIGR00221       137 PEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLA---PEEDQHFELIRHLKDAGIIVS--AGHTNATYELAKAAFKA  211 (380)
T ss_pred             hhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEEC---CCCCChHHHHHHHHHCCeEEE--eeCCCCCHHHHHHHHHc
Confidence            32    1121     23556666542 2   122222   1111111122222111 1111  467776676653   55


Q ss_pred             cCceEEEecCCCccc
Q psy4673         155 NRHLWVHKDSSMMKE  169 (171)
Q Consensus       155 ~~p~iiH~fsg~~~e  169 (171)
                      +...+-|.|+|...-
T Consensus       212 Ga~~~THlfNaM~~~  226 (380)
T TIGR00221       212 GATHATHLYNAMSPI  226 (380)
T ss_pred             CCCeeeeeccCCCCc
Confidence            667889999987643

>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type

Probab=94.87  E-value=0.53  Score=39.69  Aligned_cols=81  Identities=9%  Similarity=0.032  Sum_probs=45.0

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHH-HHHhcCC--cEEEEeeeCCCCCCCCCH
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALR-LARIYPG--MVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~-l~~~~~~--~v~~~~GiHP~~~~~~~~   96 (171)
                      -|.||||-..   .-++.++ -+-..||..++.....      .+......+ ..+..+.  .+.+..|++|+...    
T Consensus         8 ~~~~~~~~~~---~~~~~~~-~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~~~----   79 (341)
T TIGR00856         8 DDWHLHLRDG---AMLKAVL-PYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSL----   79 (341)
T ss_pred             cceeeeccCc---hHHHHHH-HHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCCCC----
Confidence            4899999652   2333333 3445579888876422      233333233 3445542  25567889985432    


Q ss_pred             HHHHHHHHHhccCCeEEEe
Q psy4673          97 DYIDQLRDLVSNTGNSTMN  115 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG  115 (171)
                       .+++++++.+...+.|+=
T Consensus        80 -~~~Ei~~l~~~~Gv~g~K   97 (341)
T TIGR00856        80 -TPEELERAKNEGVVRAVK   97 (341)
T ss_pred             -CHHHHHHHHHcCCeEEEE
Confidence             356677765554666654

This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.

>PLN02599 dihydroorotase

Probab=94.87  E-value=0.55  Score=40.07  Aligned_cols=97  Identities=15%  Similarity=0.083  Sum_probs=49.2

Q ss_pred             CCCCCCCcccccCCCCCCccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC------CChhhHHHHHHHHHhc-
Q psy4673           4 SSSSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG------SSLKSSKEALRLARIY-   76 (171)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~------~~~~~~~~~~~l~~~~-   76 (171)
                      ++|+...-|-|.++-..    --|.|+||-..   +-++.++ -.-..|+..++..-      ++.+.++...+.+++. 
T Consensus        11 ~~~~~~~~~~~~~~~~~----~~d~h~hlr~~---~~~~~~~-~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~   82 (364)
T PLN02599         11 SISSASAAEGTELTITR----PDDWHLHLRDG---AKLAAVV-PHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKAL   82 (364)
T ss_pred             cccccccCCCceEEecC----CcceeeEccCc---HHHHhhh-HHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhc
Confidence            45666666666654332    24999999752   2233333 34456888877743      2334454444433332 


Q ss_pred             C---CcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeE-EEe
Q psy4673          77 P---GMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS-TMN  115 (171)
Q Consensus        77 ~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vv-aIG  115 (171)
                      +   + +.+..|+++...     ..+++|+++ .+..++ |+-
T Consensus        83 ~~~vd-f~~~~~l~lt~~-----~~l~Ei~~~-~~~Gvv~gfK  118 (364)
T PLN02599         83 PPGSS-FEPLMTLYLTDN-----TTPEEIKAA-KASGVVFAVK  118 (364)
T ss_pred             CCCcc-eEEEEEEecCCC-----CCHHHHHHH-HHCCCcEEEE
Confidence            2   3 344445544332     134556655 333455 653

>PRK08417 dihydroorotase; Provisional

Probab=94.61  E-value=0.49  Score=40.41  Aligned_cols=116  Identities=14%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||.|+|+....+ .++++...+.|...||..++.... .|     +.++...+.++..+..++...++-     . .+
T Consensus        31 G~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~  104 (386)
T PRK08417         31 ALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRAL-----D-ED  104 (386)
T ss_pred             CeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEE-----C-CC
Confidence            48999999975322 356777778888899988877653 23     344444444443222122222211     1 11


Q ss_pred             HHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          97 DYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ..++++..+.+ ..+.++-.++  ..+    ...|.+-++.|+             +.++|+++|+-+.
T Consensus       105 ~~~~~i~~l~~-~Gv~~~k~~~--~~~----~~~l~~~~~~a~-------------~~g~~V~~HaEd~  153 (386)
T PRK08417        105 GKLSNIATLLK-KGAKALELSS--DLD----ANLLKVIAQYAK-------------MLDVPIFCRCEDS  153 (386)
T ss_pred             ccHHHHHHHHH-CCCEEEECCC--CCC----HHHHHHHHHHHH-------------HcCCEEEEeCCCH
Confidence            23566666542 3444443211  111    224556667788             7788888887553

>TIGR02033 D-hydantoinase D-hydantoinase

Probab=94.57  E-value=0.6  Score=40.28  Aligned_cols=121  Identities=19%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             ceEeeccCCCCC---C-CCCCHHHHHHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNR---K-FGRDLESVVQRAKDSGVQKIIAIGSS-L-KSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~---~-~~~d~~~vl~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||+|+|+...   . ..++.....+.+...||..++..... + .+....++.... ..+.-+.-+|+|... .....
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  130 (454)
T TIGR02033        52 GGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMI-THWND  130 (454)
T ss_pred             CEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecc-cCCcH
Confidence            399999999643   1 12344444456677899988775533 2 233333332221 111123346777432 11222


Q ss_pred             HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673          97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                      +.++...+++.+..+..|.   .+... ..+.    +.+.+-++.|+             ++++|+.+|+
T Consensus       131 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~----~~l~~~~~~a~-------------~~~~~v~~H~  183 (454)
T TIGR02033       131 EVLEEHIPELVEEGITSFKVFMAYKNLLMVDD----EELFEILKRAK-------------ELGALLQVHA  183 (454)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEeecCCCCCCCH----HHHHHHHHHHH-------------hCCCeEEEEc
Confidence            3344433333333332332   22111 1122    24566668888             7777777775

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.

>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3

Probab=94.57  E-value=0.23  Score=41.45  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             CCccceEeeccCCCCC--CC-------CC----CHHHH---HHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcEE
Q psy4673          20 FDNYVLIDVGANLTNR--KF-------GR----DLESV---VQRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMVY   81 (171)
Q Consensus        20 ~~~~~~iDtH~HL~~~--~~-------~~----d~~~v---l~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v~   81 (171)
                      ++.+.++.+|=|+-..  .+       .+    +.+..   +++++++|+..+|.++.. . .+...+.+++++..-.|.
T Consensus         3 ~e~LG~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II   82 (308)
T PF02126_consen    3 PEELGFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNII   82 (308)
T ss_dssp             GGGCSSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEE
T ss_pred             hHHCCCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEE
Confidence            5667889999999641  11       11    33333   356788999988886652 2 345666777777664588


Q ss_pred             EEeeeCCCCC-CCC-CHHHHHHHHHHh--------cc----CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhh
Q psy4673          82 STAGIHPHEA-KSW-DEDYIDQLRDLV--------SN----TGNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQK  146 (171)
Q Consensus        82 ~~~GiHP~~~-~~~-~~~~~~~l~~~l--------~~----~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~  146 (171)
                      .+.|+|...- +.+ .....++|.+++        ..    +.++++| ++   ..-.+.++++|++-...++       
T Consensus        83 ~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~---~~it~~E~k~lrAaa~A~~-------  152 (308)
T PF02126_consen   83 ASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS---NPITPLEEKVLRAAARAHK-------  152 (308)
T ss_dssp             EEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT---TBCEHHHHHHHHHHHHHHH-------
T ss_pred             EeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc---CCCCHHHHHHHHHHHHHHH-------
Confidence            9999986321 111 111223333322        11    3344433 65   2234668889999877777       


Q ss_pred             hhHhHhhhcCceEEEecCCC
Q psy4673         147 NFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       147 a~~~~~~~~~p~iiH~fsg~  166 (171)
                            +.+.|+.+|+-.|.
T Consensus       153 ------~TG~pI~~H~~~g~  166 (308)
T PF02126_consen  153 ------ETGAPISTHTGRGT  166 (308)
T ss_dssp             ------HHT-EEEEEESTTG
T ss_pred             ------HhCCeEEEcCCCCC
Confidence                  78888888886665

1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....

>PRK10657 isoaspartyl dipeptidase; Provisional

Probab=94.36  E-value=0.21  Score=42.30  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             ceEeeccCCCCCC----C-CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK----F-GRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~----~-~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||+|+|+....    + ..+.+.....+...|+..++.+.
T Consensus        57 G~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~   98 (388)
T PRK10657         57 GFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL   98 (388)
T ss_pred             cceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC
Confidence            4999999986210    1 13455667888889998887655

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=94.36  E-value=0.35  Score=40.01  Aligned_cols=98  Identities=14%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             HHHHHhcCCCEEEEeC-C---ChhhH------HHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEE
Q psy4673          45 VQRAKDSGVQKIIAIG-S---SLKSS------KEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTM  114 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~-~---~~~~~------~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaI  114 (171)
                      +..++..|+..++..+ .   ...+.      +.+.+.+++||+++...+.+=|...    +...+++++++.+.+++++
T Consensus        55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~----~~a~~E~er~v~~~gf~g~  130 (293)
T COG2159          55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDP----EAAAEELERRVRELGFVGV  130 (293)
T ss_pred             HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCch----HHHHHHHHHHHHhcCceEE
Confidence            4667778887655552 1   12222      3577788899998777788777653    3578889999888888887


Q ss_pred             e------cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673         115 N------RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       115 G------Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      .      ..+.+  +   +.  +....+.|.             ++++|+.||+..+.
T Consensus       131 ~l~p~~~~~~~~--~---~~--~~pi~~~a~-------------~~gvpv~ihtG~~~  168 (293)
T COG2159         131 KLHPVAQGFYPD--D---PR--LYPIYEAAE-------------ELGVPVVIHTGAGP  168 (293)
T ss_pred             EecccccCCCCC--C---hH--HHHHHHHHH-------------HcCCCEEEEeCCCC
Confidence            7      22221  1   11  566678898             99999999988754

>PLN02303 urease

Probab=94.31  E-value=0.15  Score=47.73  Aligned_cols=107  Identities=14%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-------------ChhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-------------SLKSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-------------~~~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.+       .+.+-..|+..++.-|+             +++.....++.++..|-    -+|++-.-
T Consensus       399 G~ID~HVHf~~Pg~-------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pv----n~Gf~gkG  467 (837)
T PLN02303        399 GGIDCHVHFICPQL-------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPL----NFGFTGKG  467 (837)
T ss_pred             CEEEeecCCCCCcH-------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCC----cEEEEccC
Confidence            48999999965432       13344445554444322             24455555555554442    22332211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEecCC-CCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMNRYN-SSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy~-~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                       ..   ..++.+.++++ ..++++.++. |. .+    ...+.+-++.|+             ++++|+.+|+-+
T Consensus       468 -~~---s~l~eL~elie-aGa~GfK~h~d~g-vT----pelL~raLe~Ak-------------elGVpVaIHAEd  519 (837)
T PLN02303        468 -NT---AKPEGLHEIIK-AGAMGLKLHEDWG-TT----PAAIDNCLDVAE-------------EYDIQVTIHTDT  519 (837)
T ss_pred             -cc---cCHHHHHHHHH-cCcEEEEECCCCC-CC----HHHHHHHHHHHH-------------HcCCEEEEecCc
Confidence             11   23455555543 3566666331 21 12    336777789998             888888888544

>PRK09060 dihydroorotase; Validated

Probab=94.26  E-value=0.81  Score=39.84  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=28.0

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||+|+|+....  ..+++....+.+...||..++...
T Consensus        57 G~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p   95 (444)
T PRK09060         57 GVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP   95 (444)
T ss_pred             CEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC
Confidence            4999999986532  235777777888899998877753

>PRK08123 histidinol-phosphatase; Reviewed

Probab=93.91  E-value=0.27  Score=39.97  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=27.5

Q ss_pred             cceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEE
Q psy4673          23 YVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      ||++|.|+|.....-  .+.+++.+++|.+.|+..+..
T Consensus         1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~   38 (270)
T PRK08123          1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITF   38 (270)
T ss_pred             CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence            567899999875422  246799999999999986433

>PRK09228 guanine deaminase; Provisional

Probab=93.88  E-value=2.3  Score=36.90  Aligned_cols=41  Identities=10%  Similarity=0.076  Sum_probs=25.1

Q ss_pred             HHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673          47 RAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIH   87 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiH   87 (171)
                      ++-..|+..++..++ .+..++...+.+++.+-+++.+.|+.
T Consensus       123 e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~  164 (433)
T PRK09228        123 ELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLM  164 (433)
T ss_pred             HHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence            456788887776543 35566666666666554455555553

>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed

Probab=93.76  E-value=2.8  Score=36.39  Aligned_cols=11  Identities=9%  Similarity=0.178  Sum_probs=9.6

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|++.
T Consensus        60 GlVn~H~H~~~   70 (451)
T PRK08203         60 GLVNTHHHFYQ   70 (451)
T ss_pred             ceEeccccccc
Confidence            39999999975

>PRK06846 putative deaminase; Validated

Probab=93.58  E-value=2.3  Score=36.51  Aligned_cols=11  Identities=9%  Similarity=0.238  Sum_probs=9.6

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|++.
T Consensus        68 g~iD~H~H~~~   78 (410)
T PRK06846         68 AFREMHIHLDK   78 (410)
T ss_pred             CEEeeeecccc
Confidence            49999999975

>PRK07328 histidinol-phosphatase; Provisional

Probab=93.54  E-value=0.44  Score=38.66  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=27.3

Q ss_pred             cceEeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Q psy4673          23 YVLIDVGANLTNR-KFGRDLESVVQRAKDSGVQKII   57 (171)
Q Consensus        23 ~~~iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i   57 (171)
                      ||++|.|+|-... .-...+++.+++|.+.|+..+.
T Consensus         1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~   36 (269)
T PRK07328          1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIG   36 (269)
T ss_pred             CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Confidence            5789999998753 2235799999999999998543

>PRK06189 allantoinase; Provisional

Probab=93.50  E-value=0.94  Score=39.44  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC--C-----ChhhHHHHHHHHHh
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG--S-----SLKSSKEALRLARI   75 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~--~-----~~~~~~~~~~l~~~   75 (171)
                      .+||+|+|+....  ..+++....+.+...||..++...  +     +++.+....++++.
T Consensus        55 G~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~  115 (451)
T PRK06189         55 GMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQ  115 (451)
T ss_pred             CEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCc
Confidence            4999999997632  235677777888889998777542  2     23445555555543

>TIGR03178 allantoinase allantoinase

Probab=93.46  E-value=1  Score=39.11  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||+|+|+....  ..+++....+.+...||..++...
T Consensus        52 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp   90 (443)
T TIGR03178        52 GVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMP   90 (443)
T ss_pred             cEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECC
Confidence            4999999997532  234566666677888998877754

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.

>PRK05451 dihydroorotase; Provisional

Probab=93.38  E-value=2.3  Score=35.75  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=38.3

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHH-HHHhcCC--cEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALR-LARIYPG--MVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~-l~~~~~~--~v~~~~GiHP~~~~~~   94 (171)
                      .-||.|+||-..   .....++.-.+ +++..++....      +.+.++...+ +.++++.  .+++..|++|... . 
T Consensus         9 ~~~d~h~hl~~~---~~~~~~~~~~~-~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~~-~-   82 (345)
T PRK05451          9 RPDDWHLHLRDG---AMLKAVVPYTA-RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDN-T-   82 (345)
T ss_pred             CcceEEEecCCc---hHHHHHHHHHH-HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCCC-C-
Confidence            358999999863   22223333333 45777666432      2233333333 3344332  2455677877632 1 


Q ss_pred             CHHHHHHHHHHhc
Q psy4673          95 DEDYIDQLRDLVS  107 (171)
Q Consensus        95 ~~~~~~~l~~~l~  107 (171)
                         .+++|+++.+
T Consensus        83 ---~~~El~~~~~   92 (345)
T PRK05451         83 ---DPDELERAKA   92 (345)
T ss_pred             ---CHHHHHHHHH
Confidence               3456666543

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=93.13  E-value=1.4  Score=33.43  Aligned_cols=69  Identities=22%  Similarity=0.368  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--cCCeEEEe
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--NTGNSTMN  115 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~~~vvaIG  115 (171)
                      ...+++.+...|. .+..+|.+++..+++.+ |.++||+ + -.+|.|+-+-.   +++.+.+.+.++  .+.++-||
T Consensus        37 ~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~-l-~ivg~~~g~f~---~~~~~~i~~~I~~~~pdiv~vg  108 (172)
T PF03808_consen   37 FPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPG-L-RIVGYHHGYFD---EEEEEAIINRINASGPDIVFVG  108 (172)
T ss_pred             HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCC-e-EEEEecCCCCC---hhhHHHHHHHHHHcCCCEEEEE
Confidence            5677888888876 57888999998887765 7788998 3 35787765432   233444444443  35555555

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>PRK08044 allantoinase; Provisional

Probab=93.01  E-value=1.3  Score=38.64  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC--C-----ChhhHHHHHHHHHh
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG--S-----SLKSSKEALRLARI   75 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~--~-----~~~~~~~~~~l~~~   75 (171)
                      .++|+|+|+....  ..+++....+.|...||..++..+  +     +++.++...+.++.
T Consensus        54 g~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~  114 (449)
T PRK08044         54 GMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKG  114 (449)
T ss_pred             CeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhcc
Confidence            4899999997532  346788888999999999888765  2     34445555554443

>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]

Probab=92.81  E-value=1  Score=40.69  Aligned_cols=87  Identities=13%  Similarity=0.180  Sum_probs=55.5

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh---------hHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK---------SSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~---------~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      .|||+|.|.-+..+  .+.++.+..-..|+..+|+   ||.         -....++-+++-|-.+|..+   |..++.-
T Consensus        78 GfID~H~HIESSm~--tP~~FA~~Vlp~GtTtvV~---DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~---pScVPat  149 (584)
T COG1001          78 GFIDAHLHIESSML--TPSEFARAVLPHGTTTVVS---DPHEIANVLGEDGIRFMLDEAKETPLKVYVML---PSCVPAT  149 (584)
T ss_pred             ceeecceecccccc--CHHHHHHHhhccCceEEee---CcHHHHhhccHHHHHHHHHHHhhCCeEEEEec---ccCccCC
Confidence            49999999887544  4555556566778766543   443         34455666677775455432   4444321


Q ss_pred             ------CHHHHHHHHHHhccCCeEEEe---cCC
Q psy4673          95 ------DEDYIDQLRDLVSNTGNSTMN---RYN  118 (171)
Q Consensus        95 ------~~~~~~~l~~~l~~~~vvaIG---Dy~  118 (171)
                            ..-..+.+.+++..|+|+++|   ||-
T Consensus       150 ~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~p  182 (584)
T COG1001         150 PFETSGAELTAEDIKELLEHPEVIGLGEMMNFP  182 (584)
T ss_pred             ccccCCceecHHHHHHHhhCCCccchhhhcCCc
Confidence                  112467888899999999999   664

>smart00481 POLIIIAc DNA polymerase alpha chain like domain

Probab=92.71  E-value=1  Score=28.38  Aligned_cols=51  Identities=22%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             eeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcC
Q psy4673          27 DVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYP   77 (171)
Q Consensus        27 DtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~   77 (171)
                      |.|+|-....  -...+++++++|++.|+..+.+.-. +........++.++++
T Consensus         1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~g   54 (67)
T smart00481        1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAG   54 (67)
T ss_pred             CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcC
Confidence            6788876542  2347899999999999985433222 2444556666666654

DNA polymerase alpha chain like domain, incl. family of hypothetical proteins

>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA

Probab=92.39  E-value=1.6  Score=37.60  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=25.4

Q ss_pred             cceEeeccCCCCC----CC-CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          23 YVLIDVGANLTNR----KF-GRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        23 ~~~iDtH~HL~~~----~~-~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      ..|||+|+|+...    .+ ....+.-+.++-.+||..++-.+
T Consensus        56 PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~   98 (389)
T TIGR01975        56 PGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL   98 (389)
T ss_pred             cCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc
Confidence            3499999998642    11 12344457788899998877543

The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=92.31  E-value=1.7  Score=32.89  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEee-eCCCCC
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAG-IHPHEA   91 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~G-iHP~~~   91 (171)
                      ...+++.+...+. ++..+|..++..+++.+ +.++||+ +. .+| .||...
T Consensus        35 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~-l~-i~g~~~g~~~   84 (171)
T cd06533          35 MPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPG-LK-IVGYHHGYFG   84 (171)
T ss_pred             HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCC-cE-EEEecCCCCC
Confidence            5678888888776 57888999999888774 7888998 44 477 455543

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>PRK08393 N-ethylammeline chlorohydrolase; Provisional

Probab=92.24  E-value=3.9  Score=35.23  Aligned_cols=39  Identities=13%  Similarity=0.082  Sum_probs=20.1

Q ss_pred             HHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673          47 RAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP   88 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP   88 (171)
                      ++-..|+..++.....++   ...+.+...+-+.+.+.|...
T Consensus       107 e~l~~GvTtv~d~~~~~~---~~~~a~~~~G~r~~~~~~~~~  145 (424)
T PRK08393        107 EMIKSGTTTFVDMYFHME---EVAKATLEVGLRGYLSYGMVD  145 (424)
T ss_pred             HHHhcCceEEeccccCHH---HHHHHHHHhCCeEEEeceEec
Confidence            345678876665554443   333334443334555666544

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=92.02  E-value=1.4  Score=33.74  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCCC
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHEA   91 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~~   91 (171)
                      ...+++.+...|. ++..+|..++..+++.+ +.++||+. - .+|.|+...
T Consensus        37 ~~~l~~~~~~~~~-~vfllG~~~~v~~~~~~~l~~~yP~l-~-i~g~~g~f~   85 (177)
T TIGR00696        37 MEELCQRAGKEKL-PIFLYGGKPDVLQQLKVKLIKEYPKL-K-IVGAFGPLE   85 (177)
T ss_pred             HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCC-E-EEEECCCCC
Confidence            4678888888885 57888999998888766 67889983 3 356677653

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>PRK06886 hypothetical protein; Validated

Probab=91.90  E-value=2.3  Score=35.81  Aligned_cols=93  Identities=8%  Similarity=0.002  Sum_probs=45.4

Q ss_pred             HHHHHHhcCCCE---EEEe--CCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--c
Q psy4673          44 VVQRAKDSGVQK---IIAI--GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--R  116 (171)
Q Consensus        44 vl~~a~~~gv~~---~i~v--~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--D  116 (171)
                      .++.+-..|+..   -|.+  ...+..|+.++++.++|.+.+-.-+-.-|...-. .+...+.+++-+....  -||  +
T Consensus        74 ~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~-~~~~~~l~~~al~~ad--vvGGiP  150 (329)
T PRK06886         74 AIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI-EPTAKKWFDIGSEMVD--MIGGLP  150 (329)
T ss_pred             HHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc-CccHHHHHHHHHHhCC--EEeCcc
Confidence            334455667653   2333  2246789999999999987533322223653221 1222344444333322  233  5


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673         117 YNSSQWITEIKQTLFTTFVDITAL  140 (171)
Q Consensus       117 y~~~~~~~~~Q~~~F~~ql~lA~~  140 (171)
                      +.-+. +...-.+.+.+-++||++
T Consensus       151 ~~~~~-~~~~~~e~l~~~~~lA~~  173 (329)
T PRK06886        151 YRDEL-DYGRGLEAMDILLDTAKS  173 (329)
T ss_pred             CCcCC-CCCCCHHHHHHHHHHHHH
Confidence            54211 111122345555799996

>cd01303 GDEase Guanine deaminase (GDEase)

Probab=91.85  E-value=7.8  Score=33.48  Aligned_cols=41  Identities=7%  Similarity=-0.043  Sum_probs=22.3

Q ss_pred             HHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673          46 QRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGI   86 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~Gi   86 (171)
                      .++-..|+..+...+. .++.++...+.+...+-+++.+.+.
T Consensus       118 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~  159 (429)
T cd01303         118 DELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVC  159 (429)
T ss_pred             HHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeee
Confidence            3456778877765443 2445556665555544344444443

Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=91.69  E-value=0.29  Score=38.98  Aligned_cols=35  Identities=11%  Similarity=0.073  Sum_probs=27.2

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      ||++|.|+|-... -...+++++++|.+.|++.+..
T Consensus         1 ~m~~DlHvHt~~d-~~~~~~e~i~~A~~~Gl~~i~i   35 (237)
T PRK00912          1 MKFYDLNVHAVPD-GYDTVLRLISEASHLGYSGIAL   35 (237)
T ss_pred             CCceEeccCCCCC-CcchHHHHHHHHHHCCCCEEEE
Confidence            6789999998422 2457899999999999986433

>PRK03892 ribonuclease P protein component 3; Provisional

Probab=91.67  E-value=4.9  Score=31.82  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=63.8

Q ss_pred             HHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEee-----------------eCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673          48 AKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG-----------------IHPHEAKSWDEDYIDQLRDLVSNTG  110 (171)
Q Consensus        48 a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~G-----------------iHP~~~~~~~~~~~~~l~~~l~~~~  110 (171)
                      ..+.|+.++-+++.+|......+.   +|...+.+.-|                 .||+......  .++....-+...+
T Consensus        55 ~~~yg~~gv~i~~~np~~l~~~V~---k~~~~vv~V~GGd~~vNR~AvE~~VDVL~~P~~~Rkd~--g~dHVLAKlAa~n  129 (216)
T PRK03892         55 KKEYGKVAILLVTPKPSLIREVKQ---RFLNYLIYVQGGDLRVNRYAIERGVDAIISPWVGRKDP--GIDHVLARMAAKR  129 (216)
T ss_pred             HHhcCcceEEEecCCHHHHHHHHH---hccceEEEEECCcHHHHHHHHhcccceeecccccCcCC--CccHHHHHHHHHc
Confidence            456778888888888887666553   44322333444                 6887643211  2322222222344


Q ss_pred             eEEEe-cCCC---C-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCcccc
Q psy4673         111 NSTMN-RYNS---S-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKEL  170 (171)
Q Consensus       111 vvaIG-Dy~~---~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~el  170 (171)
                      =|||+ |+..   . ...+..=...|++-++|++             +++.|++|=+...|.-++
T Consensus       130 ~VAIe~~L~plL~~~G~~Rar~L~~~r~~l~L~r-------------KYd~P~VISS~A~s~~~l  181 (216)
T PRK03892        130 GVAIGFSLSPLLRANPYERANILRFMMKAWQLVN-------------KYKVPRFITSSAESKWEV  181 (216)
T ss_pred             CeEEEEecHHHHhhCchhHHHHHHHHHHHHHHHH-------------HcCCCEEEecCcchhccC
Confidence            58888 6532   2 2233434678999999999             999999998877766554

>PRK06380 metal-dependent hydrolase; Provisional

Probab=91.66  E-value=7.8  Score=33.16  Aligned_cols=12  Identities=25%  Similarity=0.207  Sum_probs=10.0

Q ss_pred             ceEeeccCCCCC
Q psy4673          24 VLIDVGANLTNR   35 (171)
Q Consensus        24 ~~iDtH~HL~~~   35 (171)
                      .|||+|+|++..
T Consensus        55 G~Vd~H~Hl~~~   66 (418)
T PRK06380         55 GLINTHAHVGMT   66 (418)
T ss_pred             CEEeeccCCCcc
Confidence            499999999853

>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=91.57  E-value=2.8  Score=35.73  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673         125 EIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus       125 ~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ..+.+.|++..++|+             ++++|+.+|...
T Consensus       159 ~~s~e~l~~~~~lA~-------------~~g~~i~~Hl~E  185 (381)
T cd01312         159 SVHPELAQDLIDLAK-------------KLNLPLSTHFLE  185 (381)
T ss_pred             ccCHHHHHHHHHHHH-------------HcCCeEEEEecC
Confidence            345678899999999             888888888653

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK07228 N-ethylammeline chlorohydrolase; Provisional

Probab=91.53  E-value=7  Score=33.72  Aligned_cols=11  Identities=27%  Similarity=0.169  Sum_probs=9.5

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|+..
T Consensus        57 GlId~H~H~~~   67 (445)
T PRK07228         57 GLIQGHIHLCQ   67 (445)
T ss_pred             CEEecccCCcc
Confidence            49999999975

>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain

Probab=91.39  E-value=1.1  Score=33.01  Aligned_cols=50  Identities=22%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             EeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673          26 IDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY   76 (171)
Q Consensus        26 iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~   76 (171)
                      ||.|||-...  .-...+++++++|.+.|++.+ +++-  +...+....+.+++.
T Consensus         1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i-~iTDH~~~~~~~~~~~~~~~~   54 (175)
T PF02811_consen    1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAI-AITDHNNFAGYPDFYKEAKKK   54 (175)
T ss_dssp             EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEE-EEEEETTTTTHHHHHHHHHHT
T ss_pred             CCccccccCcchhhcCCHHHHHHHHHHcCCCEE-EEcCCcccccchHHHHHHHhc
Confidence            7999998765  223489999999999999854 3333  344455555555543

This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....

>PRK07572 cytosine deaminase; Validated

Probab=91.36  E-value=5.9  Score=34.18  Aligned_cols=11  Identities=9%  Similarity=0.190  Sum_probs=9.5

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|++.
T Consensus        52 G~id~h~h~~~   62 (426)
T PRK07572         52 PFVDPHFHMDA   62 (426)
T ss_pred             cceehhhCcch
Confidence            49999999974

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

Probab=91.31  E-value=1.4  Score=37.20  Aligned_cols=61  Identities=23%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIH   87 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiH   87 (171)
                      .+||.|+|+..+.  ..+|++.--..|..-||..++....      +.+.++...+.+++..   +.-+++|
T Consensus         7 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s---~vd~~~~   75 (344)
T cd01316           7 GLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKA---RCDYAFS   75 (344)
T ss_pred             CeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCc---EEeEEEE
Confidence            4899999997632  4567888888888899988877532      2344555555554432   2335555

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=91.26  E-value=7.5  Score=32.14  Aligned_cols=118  Identities=14%  Similarity=0.199  Sum_probs=62.1

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S--   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~--   93 (171)
                      ..=.|||+.   .+.+. +.+|-+.|...++.=|...      +..+++.+++..+.-.|=.=+|.=+-.-.     .  
T Consensus        79 PV~lHLDHg---~~~e~-i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~  154 (285)
T PRK07709         79 PVAIHLDHG---SSFEK-CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVI  154 (285)
T ss_pred             cEEEECCCC---CCHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccccc
Confidence            344799985   35544 4578888998755544432      22344455566553213233333321111     1  


Q ss_pred             CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          94 WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++  .-++..++++..    -.++||    -|-. .  ...+.+.++   ++++             .++.|+++|+-||
T Consensus       155 yT--~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~-~--p~L~~~~L~---~I~~-------------~~~iPLVLHGgSG  213 (285)
T PRK07709        155 YA--DPAECKHLVEATGIDCLAPALGSVHGPYKG-E--PNLGFAEME---QVRD-------------FTGVPLVLHGGTG  213 (285)
T ss_pred             CC--CHHHHHHHHHHhCCCEEEEeecccccCcCC-C--CccCHHHHH---HHHH-------------HHCCCEEEeCCCC
Confidence            22  223334444332    245788    3322 1  233444443   3566             7789999999999


Q ss_pred             Cccc
Q psy4673         166 MMKE  169 (171)
Q Consensus       166 ~~~e  169 (171)
                      .++|
T Consensus       214 ~~~e  217 (285)
T PRK07709        214 IPTA  217 (285)
T ss_pred             CCHH
Confidence            9876

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=91.14  E-value=5.8  Score=32.82  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--C
Q psy4673          28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S--W   94 (171)
Q Consensus        28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~--~   94 (171)
                      .=.|||+.   .+++. +.+|-+.|...++.=++..      +...++.+++..+.-.|=.=+|.=+-.-.     .  +
T Consensus        80 V~lHLDHg---~~~e~-i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~y  155 (286)
T PRK08610         80 VAIHLDHG---SSFEK-CKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIY  155 (286)
T ss_pred             EEEECCCC---CCHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCccccc
Confidence            44799985   35544 4678888998755545432      22344455566553223233333321110     1  2


Q ss_pred             CHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      +  .-++..++++..    -.|+||    -| ...+  ....+.+   =+++.             .++.|+++|+-||.
T Consensus       156 T--~peea~~Fv~~TgvD~LAvaiGt~HG~Y-~~~p--~Ld~~~L---~~I~~-------------~~~vPLVLHGgSG~  214 (286)
T PRK08610        156 A--DPKECQELVEKTGIDALAPALGSVHGPY-KGEP--KLGFKEM---EEIGL-------------STGLPLVLHGGTGI  214 (286)
T ss_pred             C--CHHHHHHHHHHHCCCEEEeecccccccc-CCCC--CCCHHHH---HHHHH-------------HHCCCEEEeCCCCC
Confidence            2  233344444432    245788    33 2212  2232233   34556             67899999999999


Q ss_pred             ccc
Q psy4673         167 MKE  169 (171)
Q Consensus       167 ~~e  169 (171)
                      ++|
T Consensus       215 ~~e  217 (286)
T PRK08610        215 PTK  217 (286)
T ss_pred             CHH
Confidence            876

>PRK05588 histidinol-phosphatase; Provisional

Probab=91.12  E-value=2.4  Score=34.01  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=24.5

Q ss_pred             eEeeccCCCCC-CCCCCHHHHHHHHHhcCCCE
Q psy4673          25 LIDVGANLTNR-KFGRDLESVVQRAKDSGVQK   55 (171)
Q Consensus        25 ~iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~   55 (171)
                      ++|.|+|.... .-....++.+++|.+.|+..
T Consensus         1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~   32 (255)
T PRK05588          1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGI   32 (255)
T ss_pred             CeeecccCCCCCCcccCHHHHHHHHHHcCCCE
Confidence            47999998754 22357899999999999984

>PRK07203 putative chlorohydrolase/aminohydrolase; Validated

Probab=91.01  E-value=4.7  Score=34.87  Aligned_cols=10  Identities=20%  Similarity=0.212  Sum_probs=8.8

Q ss_pred             ceEeeccCCC
Q psy4673          24 VLIDVGANLT   33 (171)
Q Consensus        24 ~~iDtH~HL~   33 (171)
                      .|||+|+|+.
T Consensus        60 GfID~H~H~~   69 (442)
T PRK07203         60 GLINSHNHIY   69 (442)
T ss_pred             ceeeccccch
Confidence            3999999986

>PRK06038 N-ethylammeline chlorohydrolase; Provisional

Probab=90.99  E-value=7.6  Score=33.54  Aligned_cols=11  Identities=9%  Similarity=0.111  Sum_probs=9.5

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|++.
T Consensus        56 G~vd~H~H~~~   66 (430)
T PRK06038         56 GLVNTHTHAAM   66 (430)
T ss_pred             CeeecccCcch
Confidence            39999999974

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=90.98  E-value=0.19  Score=39.93  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             eEeeccCCCCCCC-----CCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          25 LIDVGANLTNRKF-----GRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        25 ~iDtH~HL~~~~~-----~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      +||.|||+-..--     .++.-.+++.|.++||..||+.+-
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsH   42 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSH   42 (254)
T ss_pred             CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeeccc
Confidence            5899999854211     123445678899999999877553

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=90.73  E-value=5.9  Score=32.79  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S--   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~--   93 (171)
                      ..=.|||+.   .+.+ .+.+|-+.|...++.=+...      +..+++.+++..+.-.|=.=+|-=+-.-.     .  
T Consensus        76 PValHLDHg---~~~e-~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~  151 (286)
T PRK12738         76 PLALHLDHH---ESLD-DIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAES  151 (286)
T ss_pred             CEEEECCCC---CCHH-HHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccch
Confidence            455899985   3555 56668888998755544432      22344455565553112222332221100     0  


Q ss_pred             --CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673          94 --WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus        94 --~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                        ++  .-++..++++..    -.|+||    -|-. .  ...+   |.+.=++.+             ..+.|+++|+-
T Consensus       152 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~--p~Ld---fd~l~~I~~-------------~~~vPLVLHGg  210 (286)
T PRK12738        152 AFLT--DPQEAKRFVELTGVDSLAVAIGTAHGLYSK-T--PKID---FQRLAEIRE-------------VVDVPLVLHGA  210 (286)
T ss_pred             hcCC--CHHHHHHHHHHhCCCEEEeccCcccCCCCC-C--CcCC---HHHHHHHHH-------------HhCCCEEEeCC
Confidence              21  223344444432    245788    3321 1  2233   445556677             77899999999


Q ss_pred             CCCccc
Q psy4673         164 SSMMKE  169 (171)
Q Consensus       164 sg~~~e  169 (171)
                      ||.++|
T Consensus       211 SG~~~e  216 (286)
T PRK12738        211 SDVPDE  216 (286)
T ss_pred             CCCCHH
Confidence            999876

>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=90.44  E-value=2  Score=36.40  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=35.9

Q ss_pred             ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHh
Q psy4673          24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARI   75 (171)
Q Consensus        24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~   75 (171)
                      .+||.|+|+..+  ...+|++.--+.|..-||..++..-.      +++.++...+.+++
T Consensus         7 G~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~   66 (361)
T cd01318           7 GVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAA   66 (361)
T ss_pred             CeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhcc
Confidence            489999999763  24578888888889999988776432      23455555555443

This group contains the archeal members of the DHOase family.

>PRK09248 putative hydrolase; Validated

Probab=90.27  E-value=1.9  Score=34.41  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEE
Q psy4673          24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      +++|.|+|-..... ...+++++++|.+.|+..+..
T Consensus         3 ~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~i   38 (246)
T PRK09248          3 YPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAI   38 (246)
T ss_pred             cceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence            47899999876422 247999999999999986444

>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type

Probab=90.24  E-value=4.9  Score=33.01  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             eeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCChh--------------hHHHHHHHHHh-cCCcEEEEeeeCCCC
Q psy4673          27 DVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSLK--------------SSKEALRLARI-YPGMVYSTAGIHPHE   90 (171)
Q Consensus        27 DtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~~--------------~~~~~~~l~~~-~~~~v~~~~GiHP~~   90 (171)
                      ++=.|+..... ...+.+.+.++...||+.+++++.|+.              ....++++.++ ++..+..+++.+|..
T Consensus        61 ~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~  140 (281)
T TIGR00677        61 ETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEG  140 (281)
T ss_pred             CeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCC
Confidence            44478876433 235777888899999999998888761              12233444433 443367788899965


Q ss_pred             CCCCC--HHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673          91 AKSWD--EDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA  139 (171)
Q Consensus        91 ~~~~~--~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~  139 (171)
                      -.+..  +.+++.|.+-+      .-| ||.-.+.-.+.  +.|.+.++.++
T Consensus       141 Hp~~~~~~~d~~~L~~Ki------~aGA~f~iTQ~~Fd~--~~~~~f~~~~~  184 (281)
T TIGR00677       141 HPEAESVELDLKYLKEKV------DAGADFIITQLFYDV--DNFLKFVNDCR  184 (281)
T ss_pred             CCCCCCHHHHHHHHHHHH------HcCCCEeeccceecH--HHHHHHHHHHH
Confidence            33322  22344554432      257 87654332222  34555555555

This protein is an FAD-containing flavoprotein.

>PRK08204 hypothetical protein; Provisional

Probab=89.73  E-value=12  Score=32.19  Aligned_cols=41  Identities=10%  Similarity=-0.040  Sum_probs=24.2

Q ss_pred             HHHHHHHHhhH-----HHHhh------h--hhHhHhhhcC----ceEEEecCCCcccc
Q psy4673         130 LFTTFVDITAL-----CEFCQ------K--NFSRKEHLNR----HLWVHKDSSMMKEL  170 (171)
Q Consensus       130 ~F~~ql~lA~~-----~iH~r------~--a~~~~~~~~~----p~iiH~fsg~~~el  170 (171)
                      .+.+.+++|.+     .+|+-      .  +.+.+.+.+.    ..+.|+...+.+++
T Consensus       202 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~  259 (449)
T PRK08204        202 VARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDEL  259 (449)
T ss_pred             HHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHH
Confidence            45566688887     57872      1  2333444332    36889887776553

>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases

Probab=89.66  E-value=1.4  Score=35.23  Aligned_cols=39  Identities=10%  Similarity=0.118  Sum_probs=22.4

Q ss_pred             HHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEEEEee
Q psy4673          47 RAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVYSTAG   85 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~~~~G   85 (171)
                      ++-..|+..++..+.. ++..+.+.+.++..+.+++..++
T Consensus        60 e~l~~GtTt~~d~~~~~~~~~~a~~~a~~~~g~r~~~~~~   99 (263)
T cd01305          60 DMRETGIGAFADFREGGVEGIELLRRALGKLPVPFEVILG   99 (263)
T ss_pred             HHHhcCCeEEEEccCcchhHHHHHHHHHHhcCCCceEEec
Confidence            4567788776665433 44555666666666544333444

These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.

>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional

Probab=89.63  E-value=9.9  Score=32.57  Aligned_cols=137  Identities=16%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             ceEeeccCCCCC-CCC--------CCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhc-CCcEEEEeeeC---C
Q psy4673          24 VLIDVGANLTNR-KFG--------RDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIY-PGMVYSTAGIH---P   88 (171)
Q Consensus        24 ~~iDtH~HL~~~-~~~--------~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~-~~~v~~~~GiH---P   88 (171)
                      .+||+|+|.... .|.        ++++.+.+.+...||..++-..  ..++...++++..+++ ...-..-+|+|   |
T Consensus        54 G~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGP  133 (382)
T PRK11170         54 GFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGP  133 (382)
T ss_pred             ceeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence            499999996421 111        2344444556788998766322  2345555554433321 11113357888   4


Q ss_pred             CCCCC----CCHH-----HHHHHHHHhccCC-eEEEecCCCCCCcHHHHHHHHHHHHHHhhH------HHHhhhhhHhHh
Q psy4673          89 HEAKS----WDED-----YIDQLRDLVSNTG-NSTMNRYNSSQWITEIKQTLFTTFVDITAL------CEFCQKNFSRKE  152 (171)
Q Consensus        89 ~~~~~----~~~~-----~~~~l~~~l~~~~-vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~------~iH~r~a~~~~~  152 (171)
                      +....    .+++     ..+.++.+++... +.-|- .-.+...   . + |   ++.+.+      +=|+--.+++..
T Consensus       134 fi~~~~~Gah~~~~~~~p~~~~~~~~~~~~~~i~~iT-lAPE~~~---~-~-~---i~~l~~~gi~vs~GHs~A~~~~~~  204 (382)
T PRK11170        134 YLNLVKKGTHNPEFIRKPDAEMVDFLCENADVITKVT-LAPEMVD---A-E-V---IRKLVEAGIVVSAGHSNATYEEAK  204 (382)
T ss_pred             CCCcccCCCCCHHHhcCcCHHHHHHHHhccCCEEEEE-ECCCCCc---H-H-H---HHHHHHCCcEEEeeCCcCCHHHHH
Confidence            43332    1222     1345555554322 22221 1111111   1 1 2   222222      467765566543


Q ss_pred             ---hhcCceEEEecCCCccc
Q psy4673         153 ---HLNRHLWVHKDSSMMKE  169 (171)
Q Consensus       153 ---~~~~p~iiH~fsg~~~e  169 (171)
                         +.+...+-|.|+|...-
T Consensus       205 ~a~~~Ga~~~THlfNaM~~~  224 (382)
T PRK11170        205 AGFRAGITFATHLYNAMPYI  224 (382)
T ss_pred             HHHHcCCCEEeeccccCCcc
Confidence               55667889999987643

>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

Probab=89.42  E-value=8.4  Score=32.25  Aligned_cols=132  Identities=11%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             CCCccceEeeccCCCCCC-----------CC--CCHHHHH---HHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcE
Q psy4673          19 CFDNYVLIDVGANLTNRK-----------FG--RDLESVV---QRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMV   80 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~~~-----------~~--~d~~~vl---~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v   80 (171)
                      .++.+.+..+|=||-...           +.  .....++   .+....|+..+|.++.. . .+-.++.++++.-.-.|
T Consensus        12 a~~~lGvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnI   91 (316)
T COG1735          12 APADLGVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNI   91 (316)
T ss_pred             CHHHccceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcE
Confidence            456678899999986431           11  1122233   33445799988876642 1 34556666666655346


Q ss_pred             EEEeeeC-----CCCCCCCCHHHHH-HHHHHhc----cC----CeEE-EecCCCCCCcHHHHHHHHHHHHHHhhHHHHhh
Q psy4673          81 YSTAGIH-----PHEAKSWDEDYID-QLRDLVS----NT----GNST-MNRYNSSQWITEIKQTLFTTFVDITALCEFCQ  145 (171)
Q Consensus        81 ~~~~GiH-----P~~~~~~~~~~~~-~l~~~l~----~~----~vva-IGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r  145 (171)
                      ..+.|++     |.+....+.+.+. .+.+-++    .+    .+++ +|++--   -....+++|+.-.+.++      
T Consensus        92 V~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~---iTp~Eek~lrAaA~A~~------  162 (316)
T COG1735          92 VAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPA---ITPLEEKSLRAAARAHK------  162 (316)
T ss_pred             EEeccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceeeeccCccc---CCHHHHHHHHHHHHHhh------
Confidence            7777765     5444333322222 2222222    22    2332 224322   22445678887777676      


Q ss_pred             hhhHhHhhhcCceEEEecCCC
Q psy4673         146 KNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       146 ~a~~~~~~~~~p~iiH~fsg~  166 (171)
                             +.+.|++.|+.-|.
T Consensus       163 -------~Tg~Pi~tHt~~gt  176 (316)
T COG1735         163 -------ETGAPISTHTPAGT  176 (316)
T ss_pred             -------hcCCCeEEeccchh
Confidence                   77889999987765

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=89.40  E-value=7.8  Score=32.00  Aligned_cols=119  Identities=16%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~   93 (171)
                      ..=.|||+.   .+. +.+.+|-+.|...++.=++..      +...++.+++..+.-.|=.=+|-=+-.-.       .
T Consensus        74 PValHLDHg---~~~-e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~  149 (282)
T TIGR01858        74 PLALHLDHH---ESL-DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEED  149 (282)
T ss_pred             CEEEECCCC---CCH-HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccch
Confidence            345799985   244 556888888998755544431      22344455566554213223333221100       0


Q ss_pred             --CCHHHHHHHHHHhccCC----eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          94 --WDEDYIDQLRDLVSNTG----NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        94 --~~~~~~~~l~~~l~~~~----vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                        ++  .-++..++++...    .++||   =.|...  ...+.+.+   =++..             .++.|+++|+-|
T Consensus       150 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~--p~Ldf~~L---~~I~~-------------~~~iPLVlHGgS  209 (282)
T TIGR01858       150 ALYT--DPQEAKEFVEATGVDSLAVAIGTAHGLYKKT--PKLDFDRL---AEIRE-------------VVDVPLVLHGAS  209 (282)
T ss_pred             hccC--CHHHHHHHHHHHCcCEEecccCccccCcCCC--CccCHHHH---HHHHH-------------HhCCCeEEecCC
Confidence              11  1234444444332    45688   222221  13333333   34555             678999999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |.++|
T Consensus       210 G~~~e  214 (282)
T TIGR01858       210 DVPDE  214 (282)
T ss_pred             CCCHH
Confidence            98876

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>COG3964 Predicted amidohydrolase [General function prediction only]

Probab=89.31  E-value=1.2  Score=37.40  Aligned_cols=135  Identities=12%  Similarity=0.012  Sum_probs=69.8

Q ss_pred             cceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHh-cCCcEEEEeeeCCCCC----CCC
Q psy4673          23 YVLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARI-YPGMVYSTAGIHPHEA----KSW   94 (171)
Q Consensus        23 ~~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~----~~~   94 (171)
                      ..+||.|.|....  .+.-+++.+   +...||..+|.-|.. ..++..-+++.-. ...+|++.+-+-|--.    ..+
T Consensus        57 pG~iDlHvHvy~ggt~~~v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~  133 (386)
T COG3964          57 PGLIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELY  133 (386)
T ss_pred             cCeeeeeeEEecCCCccCcCHHHc---cccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcceeeehhhC
Confidence            3589999999863  333445443   346799888876652 3344333332211 1123566565555211    111


Q ss_pred             CH--HHHHHHHHHhcc-C-CeEEEe------cCC-CCCCcHHHHHHHHHHHHHHhhH-----HHHhhh---hhHhHhhhc
Q psy4673          95 DE--DYIDQLRDLVSN-T-GNSTMN------RYN-SSQWITEIKQTLFTTFVDITAL-----CEFCQK---NFSRKEHLN  155 (171)
Q Consensus        95 ~~--~~~~~l~~~l~~-~-~vvaIG------Dy~-~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~---a~~~~~~~~  155 (171)
                      +.  -+.+++.++..+ + -+||+-      |.. |.-.+       +..-+++|..     ++|.-.   -++|+++.-
T Consensus       134 d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitP-------l~la~~ia~~~klPlmvHigePp~~~dEvlerL  206 (386)
T COG3964         134 DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITP-------LTLALRIANDLKLPLMVHIGEPPVLMDEVLERL  206 (386)
T ss_pred             ChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCch-------HHHHHHHHhhcCCceEEecCCCCccHHHHHHhc
Confidence            11  123444444443 2 244433      221 11112       2333556665     566655   367888776


Q ss_pred             Cc--eEEEecCCCc
Q psy4673         156 RH--LWVHKDSSMM  167 (171)
Q Consensus       156 ~p--~iiH~fsg~~  167 (171)
                      .+  +|-|||+|.+
T Consensus       207 ~~GDIitHcfngkp  220 (386)
T COG3964         207 RRGDIITHCFNGKP  220 (386)
T ss_pred             cCCceeeeeccCCC
Confidence            65  7889998864

>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

Probab=88.84  E-value=13  Score=32.51  Aligned_cols=119  Identities=13%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~   94 (171)
                      .+||.|.|+..+.+  .++++.--+.|..-|+..++..-.      +++.++..+..+++... .+.+..|+=++...  
T Consensus        54 G~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~--  131 (430)
T COG0044          54 GLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLG--  131 (430)
T ss_pred             CeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccc--
Confidence            48999999997643  345666667777788877665433      34555555555553221 13444555554332  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                         .. .+.+......+++.=|+....    .-...+++-++.|.             +.+.++++|+-+.
T Consensus       132 ---~~-~~~~~~~~~g~~~F~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~H~Ed~  181 (430)
T COG0044         132 ---KL-ELTERGVEAGFKGFMDDSTGA----LDDDVLEEALEYAA-------------ELGALILVHAEDD  181 (430)
T ss_pred             ---hh-hhhhhhhccceEEEecCCcCc----CCHHHHHHHHHHHH-------------hcCCeEEEecCCh
Confidence               11 222222122232221443211    22345666778888             6777777776554

>PRK09045 N-ethylammeline chlorohydrolase; Provisional

Probab=88.69  E-value=10  Score=32.74  Aligned_cols=11  Identities=18%  Similarity=0.142  Sum_probs=9.4

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|+..
T Consensus        67 G~id~H~Hl~~   77 (443)
T PRK09045         67 GLINAHTHAAM   77 (443)
T ss_pred             CEeccccChhh
Confidence            39999999974

>PRK06687 chlorohydrolase; Validated

Probab=88.42  E-value=11  Score=32.20  Aligned_cols=12  Identities=8%  Similarity=0.072  Sum_probs=9.8

Q ss_pred             ceEeeccCCCCC
Q psy4673          24 VLIDVGANLTNR   35 (171)
Q Consensus        24 ~~iDtH~HL~~~   35 (171)
                      .|||+|+|+...
T Consensus        59 GlIn~H~H~~~~   70 (419)
T PRK06687         59 GLVNCHTHSAMT   70 (419)
T ss_pred             ceeeeccCCCcc
Confidence            399999999653

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=88.15  E-value=13  Score=30.53  Aligned_cols=120  Identities=22%  Similarity=0.277  Sum_probs=62.1

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------   92 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------   92 (171)
                      +..=.|||+.   .+.+. +.+|-+.|...++.=+...      +...++.+++..+.-.|=.=+|-=+-.-.       
T Consensus        70 VPV~lHLDH~---~~~~~-i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~  145 (276)
T cd00947          70 VPVALHLDHG---SSFEL-IKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEG  145 (276)
T ss_pred             CCEEEECCCC---CCHHH-HHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccc
Confidence            3455789985   35544 4677788998755434332      22344455566553212222333221110       


Q ss_pred             CCCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          93 SWDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        93 ~~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      .++  .-++..++++..    -.++||    -|..  .....+.+++   -++.+             ..+.|+++|+-|
T Consensus       146 ~~T--~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~--~~p~L~~~~L---~~i~~-------------~~~vPLVlHGgS  205 (276)
T cd00947         146 LLT--DPEEAEEFVEETGVDALAVAIGTSHGAYKG--GEPKLDFDRL---KEIAE-------------RVNVPLVLHGGS  205 (276)
T ss_pred             cCC--CHHHHHHHHHHHCCCEEEeccCccccccCC--CCCccCHHHH---HHHHH-------------HhCCCEEEeCCC
Confidence            121  233444444432    245688    3322  1223444444   45566             668999999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |.++|
T Consensus       206 G~~~e  210 (276)
T cd00947         206 GIPDE  210 (276)
T ss_pred             CCCHH
Confidence            98875

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional

Probab=87.92  E-value=4.5  Score=33.53  Aligned_cols=105  Identities=13%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             EeeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCChhh--------HHHHHHHHHhcCCcEEEEeeeCCCCCCCCC-
Q psy4673          26 IDVGANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSLKS--------SKEALRLARIYPGMVYSTAGIHPHEAKSWD-   95 (171)
Q Consensus        26 iDtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~~~--------~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~-   95 (171)
                      +++=.||...... ..+...+..+.+.||+.+++++.|+..        ...++++.++... +..+++.||.--++.. 
T Consensus        83 ~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~-~~i~va~yPeghp~~~~  161 (296)
T PRK09432         83 LEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVAD-FDISVAAYPEVHPEAKS  161 (296)
T ss_pred             CCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCC-CccceeeCCCCCCCCCC
Confidence            3444788765432 256777788999999999999988521        1255666666554 3557888885333222 


Q ss_pred             -HHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673          96 -EDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA  139 (171)
Q Consensus        96 -~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~  139 (171)
                       +.+++.|++-+      ..| ||...+.-.+  -+.|.+.++.++
T Consensus       162 ~~~dl~~Lk~K~------~aGA~~~iTQ~~Fd--~~~~~~f~~~~~  199 (296)
T PRK09432        162 AQADLINLKRKV------DAGANRAITQFFFD--VESYLRFRDRCV  199 (296)
T ss_pred             HHHHHHHHHHHH------HcCCCeeecccccc--hHHHHHHHHHHH
Confidence             23444444322      346 7655432222  224666666665

>PRK02925 glucuronate isomerase; Reviewed

Probab=87.73  E-value=0.35  Score=42.48  Aligned_cols=56  Identities=16%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             CCccceEeeccCCCCCCCC-----CCHHHHH--------HHHHhcCCCE-EEEeCCChhhHHHHHHHHHhcC
Q psy4673          20 FDNYVLIDVGANLTNRKFG-----RDLESVV--------QRAKDSGVQK-IIAIGSSLKSSKEALRLARIYP   77 (171)
Q Consensus        20 ~~~~~~iDtH~HL~~~~~~-----~d~~~vl--------~~a~~~gv~~-~i~v~~~~~~~~~~~~l~~~~~   77 (171)
                      -+.|++||-||||+...+.     +++-++.        +.++.+||.- .|....+  +.++-..+++..|
T Consensus        23 a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as--~~ekf~~~a~t~p   92 (466)
T PRK02925         23 AKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDAS--DREKFRAWAKTVP   92 (466)
T ss_pred             HhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCC--HHHHHHHHHHhhh
Confidence            5778999999999753222     4555555        5678999973 4443333  4444444444443

>PRK08185 hypothetical protein; Provisional

Probab=87.64  E-value=11  Score=31.03  Aligned_cols=123  Identities=22%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCC----CCH
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAKS----WDE   96 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~----~~~   96 (171)
                      ..=.|||+.   .+.+ .+.+|-+.|+..++.=+.+.      +...++.+++..+.-.+-.-+|.=+.....    ..+
T Consensus        70 PV~lHLDHg---~~~e-~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~  145 (283)
T PRK08185         70 PFVIHLDHG---ATIE-DVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSE  145 (283)
T ss_pred             CEEEECCCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccc
Confidence            455899985   3444 45677788998766655543      123344555566642233445553321000    000


Q ss_pred             ---HHHHHHHHHhccC--C--eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          97 ---DYIDQLRDLVSNT--G--NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        97 ---~~~~~l~~~l~~~--~--vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                         ...++..+..+..  -  .++||   =.|.........   |.+-=++++             ..+.|+++|+-||.
T Consensus       146 ~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~---~e~l~~I~~-------------~~~iPLVlHGgsg~  209 (283)
T PRK08185        146 IIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ---MDLLKEINE-------------RVDIPLVLHGGSAN  209 (283)
T ss_pred             ccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcC---HHHHHHHHH-------------hhCCCEEEECCCCC
Confidence               0233334444332  2  34567   222221112233   333345566             67899999999998


Q ss_pred             ccc
Q psy4673         167 MKE  169 (171)
Q Consensus       167 ~~e  169 (171)
                      ++|
T Consensus       210 ~~e  212 (283)
T PRK08185        210 PDA  212 (283)
T ss_pred             CHH
Confidence            876

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=87.48  E-value=12  Score=30.89  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=61.9

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC--------
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK--------   92 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~--------   92 (171)
                      ..=.|||+..   +. +.+.+|-+.|...++.=++..      +.-.++.+++..+.-.|=.=+|-=+-.-.        
T Consensus        76 PV~lHLDHg~---~~-e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~  151 (284)
T PRK09195         76 PLALHLDHHE---KF-DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEAD  151 (284)
T ss_pred             CEEEECCCCC---CH-HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCccccccc
Confidence            4457999853   44 556778888998755544432      12344455566553112222333221100        


Q ss_pred             -CCCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          93 -SWDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        93 -~~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                       .++  .-++..++++..    -.|+||   =.|.. . ...+.+.+   =++.+             ..+.|+++|+-|
T Consensus       152 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~-p~Ld~~~L---~~I~~-------------~~~vPLVLHGgS  211 (284)
T PRK09195        152 ALYT--DPAQAREFVEATGIDSLAVAIGTAHGMYKG-E-PKLDFDRL---ENIRQ-------------WVNIPLVLHGAS  211 (284)
T ss_pred             ccCC--CHHHHHHHHHHHCcCEEeeccCccccccCC-C-CcCCHHHH---HHHHH-------------HhCCCeEEecCC
Confidence             021  223334444432    245788   22222 1 13343333   34555             668999999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |.++|
T Consensus       212 G~~~e  216 (284)
T PRK09195        212 GLPTK  216 (284)
T ss_pred             CCCHH
Confidence            99876

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=87.46  E-value=0.91  Score=36.84  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      +|.+|.|||-....-...+.+++++|...|+. ++.++.
T Consensus         1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~-vlAiTD   38 (258)
T COG0613           1 WMKADLHVHTTASDGGLTPREVVERAKAKGVD-VLAITD   38 (258)
T ss_pred             CcceeeeEecccCCCCCCHHHHHHHHHHcCCC-EEEECC
Confidence            46789999987643334589999999999996 566664

>PRK04250 dihydroorotase; Provisional

Probab=87.35  E-value=2.3  Score=36.58  Aligned_cols=52  Identities=23%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHh
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARI   75 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~   75 (171)
                      .+||+|+|+....  ..+++....+.+...|+..++....+      ++.+....+.+++
T Consensus        48 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~  107 (398)
T PRK04250         48 GLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEK  107 (398)
T ss_pred             CEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCc
Confidence            4999999995422  22456677788888999887775432      3445454555544

>PRK07213 chlorohydrolase; Provisional

Probab=87.22  E-value=15  Score=31.11  Aligned_cols=11  Identities=18%  Similarity=0.389  Sum_probs=9.7

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|+..
T Consensus        51 Glvd~H~H~~~   61 (375)
T PRK07213         51 PLINAHTHIGD   61 (375)
T ss_pred             ceeeeccccCc
Confidence            59999999975

>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate []

Probab=87.02  E-value=0.19  Score=44.26  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             CCCccceEeeccCCCCCCC-----CCCHHHHH--------HHHHhcCCCEEEEeCCChhhHHHHHHHHHhc
Q psy4673          19 CFDNYVLIDVGANLTNRKF-----GRDLESVV--------QRAKDSGVQKIIAIGSSLKSSKEALRLARIY   76 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~~~~-----~~d~~~vl--------~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~   76 (171)
                      --+.|++||.||||+...+     .+++.+++        ..++.+||.--...| +....++-..+++..
T Consensus        22 ~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg-~a~~~ekF~a~a~~~   91 (462)
T PF02614_consen   22 YAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITG-DASPREKFRAWAETV   91 (462)
T ss_dssp             CCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTC-SSSHHHHHHHHHHHG
T ss_pred             HHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCC-CCCCHHHHHHHHHhh
Confidence            3678999999999985322     13455544        457888886322233 333444444555543

; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....

>PRK13660 hypothetical protein; Provisional

Probab=86.98  E-value=12  Score=28.84  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCCCEEEEeCC-ChhhH--HHHHHHHHhcCCcEEEEeeeCCC--CCCCCCHHHHHHHHHHhcc-CCeEEE
Q psy4673          41 LESVVQRAKDSGVQKIIAIGS-SLKSS--KEALRLARIYPGMVYSTAGIHPH--EAKSWDEDYIDQLRDLVSN-TGNSTM  114 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~-~~~~~--~~~~~l~~~~~~~v~~~~GiHP~--~~~~~~~~~~~~l~~~l~~-~~vvaI  114 (171)
                      +..-+.++-+.|++.+|+-|. ..+.|  +-+++|.+.||+. -. .-+=|.  ....|++..-+.+..++.. +.++.|
T Consensus        31 L~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~l-kL-~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~v  108 (182)
T PRK13660         31 IKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDL-KL-AVITPFEEHGENWNEANQEKLANILKQADFVKSI  108 (182)
T ss_pred             HHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCe-EE-EEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEe
Confidence            344455566679997766443 34555  7888999999973 22 222343  4556888888888887765 567778


Q ss_pred             e-cCC
Q psy4673         115 N-RYN  118 (171)
Q Consensus       115 G-Dy~  118 (171)
                      . .||
T Consensus       109 s~~~y  113 (182)
T PRK13660        109 SKRPY  113 (182)
T ss_pred             cCCCC
Confidence            8 434

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=86.70  E-value=15  Score=30.33  Aligned_cols=119  Identities=18%  Similarity=0.261  Sum_probs=62.0

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCC-------CCC
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHE-------AKS   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~-------~~~   93 (171)
                      ..=.|||+..   +. +.+.+|-+.|...++.=++..      +...++.+++..+.-.|=.=+|-=+-.       ...
T Consensus        76 PValHLDH~~---~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~  151 (284)
T PRK12737         76 PLALHLDHHE---DL-DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKD  151 (284)
T ss_pred             CEEEECCCCC---CH-HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccc
Confidence            4457899853   44 456778888998755444432      223445556666532122223322211       000


Q ss_pred             --CCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          94 --WDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        94 --~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                        ++  .-++..++++..    -.|+||   =.|..  ....+.+.+   =++++             ..+.|+++|+-|
T Consensus       152 ~~~T--~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~--~p~Ld~~~L---~~I~~-------------~~~iPLVlHGgS  211 (284)
T PRK12737        152 AMYT--NPDAAAEFVERTGIDSLAVAIGTAHGLYKG--EPKLDFERL---AEIRE-------------KVSIPLVLHGAS  211 (284)
T ss_pred             ccCC--CHHHHHHHHHHhCCCEEeeccCccccccCC--CCcCCHHHH---HHHHH-------------HhCCCEEEeCCC
Confidence              21  123334444432    245788   11221  123444444   34465             667999999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |.++|
T Consensus       212 G~~~e  216 (284)
T PRK12737        212 GVPDE  216 (284)
T ss_pred             CCCHH
Confidence            98876

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=86.70  E-value=17  Score=30.09  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=62.8

Q ss_pred             eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------CC
Q psy4673          28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------SW   94 (171)
Q Consensus        28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~~   94 (171)
                      .=.|||+.   .+.+ .+.+|-+.|...++.-|...      +...++.+++..+.-.|=.=+|.=+-.-.       .+
T Consensus        77 V~lHLDH~---~~~e-~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~  152 (283)
T PRK07998         77 VSLHLDHG---KTFE-DVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCK  152 (283)
T ss_pred             EEEECcCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccccccc
Confidence            34789885   3554 44567788999876656542      22345556666664212233443321110       01


Q ss_pred             CHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      +  .-++..+++++.    -.++||    -|. .   ...+.+.+   =++.+             ..+.|+++|+-||.
T Consensus       153 T--~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~-~---p~l~~~~l---~~I~~-------------~~~vPLVlHGgSG~  210 (283)
T PRK07998        153 T--EPEKVKDFVERTGCDMLAVSIGNVHGLED-I---PRIDIPLL---KRIAE-------------VSPVPLVIHGGSGI  210 (283)
T ss_pred             C--CHHHHHHHHHHhCcCeeehhccccccCCC-C---CCcCHHHH---HHHHh-------------hCCCCEEEeCCCCC
Confidence            1  233344444432    245688    332 1   22333444   35566             67899999999999


Q ss_pred             ccc
Q psy4673         167 MKE  169 (171)
Q Consensus       167 ~~e  169 (171)
                      ++|
T Consensus       211 ~~e  213 (283)
T PRK07998        211 PPE  213 (283)
T ss_pred             CHH
Confidence            875

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=86.65  E-value=9.3  Score=31.09  Aligned_cols=104  Identities=15%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             eeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCChh------------hHHHHHHHHHh-cCCcEEEEeeeCCCCCC
Q psy4673          27 DVGANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSLK------------SSKEALRLARI-YPGMVYSTAGIHPHEAK   92 (171)
Q Consensus        27 DtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~~------------~~~~~~~l~~~-~~~~v~~~~GiHP~~~~   92 (171)
                      ++=.|+...... ..+...+..+...||+.+++++.|+.            +...++++.++ +++ +..+++.||.--.
T Consensus        60 ~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp  138 (272)
T TIGR00676        60 PTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHP  138 (272)
T ss_pred             CeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCC
Confidence            333677654332 25777888899999999987777654            13334444444 565 6778888786322


Q ss_pred             CC--CHHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673          93 SW--DEDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA  139 (171)
Q Consensus        93 ~~--~~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~  139 (171)
                      +.  .+.+++.|.+-      +..| ||.-.+.-.+  .+.|.+.++.++
T Consensus       139 ~~~~~~~~~~~L~~K------~~aGA~f~iTQ~~fd--~~~~~~~~~~~~  180 (272)
T TIGR00676       139 EAPNLEEDIENLKRK------VDAGADYAITQLFFD--NDDYYRFVDRCR  180 (272)
T ss_pred             CCCCHHHHHHHHHHH------HHcCCCeEeeccccC--HHHHHHHHHHHH
Confidence            22  12334444432      2346 7655432222  134555555554

This protein is an FAD-containing flavoprotein.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=86.59  E-value=17  Score=30.08  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~   93 (171)
                      ..=.|||+..   +. +.+.+|-+.|...++.=|+..      +.-.++.+++..+.-.|=.=+|.=+-.-.       .
T Consensus        79 PV~lHLDHg~---~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~  154 (288)
T TIGR00167        79 PVALHLDHGA---SE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADES  154 (288)
T ss_pred             cEEEECCCCC---CH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccc
Confidence            4558999853   54 456777788998755434432      11233344455443113333333321100       0


Q ss_pred             --CCHHHHHHHHHHhccCC----eEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673          94 --WDEDYIDQLRDLVSNTG----NSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus        94 --~~~~~~~~l~~~l~~~~----vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                        ++  .-++..++++...    .|+||    -|..  .+...+.+.+   =++.+             ..+.|+++|+-
T Consensus       155 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~--~p~~Ld~~~L---~~I~~-------------~v~vPLVlHGg  214 (288)
T TIGR00167       155 ALYT--DPEEAKEFVKLTGVDSLAAAIGNVHGVYKG--EPKGLDFERL---EEIQK-------------YVNLPLVLHGG  214 (288)
T ss_pred             ccCC--CHHHHHHHHhccCCcEEeeccCccccccCC--CCCccCHHHH---HHHHH-------------HhCCCEEEeCC
Confidence              21  2345555665433    45688    3322  2221344444   34465             66899999999


Q ss_pred             CCCccc
Q psy4673         164 SSMMKE  169 (171)
Q Consensus       164 sg~~~e  169 (171)
                      ||.++|
T Consensus       215 SG~~~e  220 (288)
T TIGR00167       215 SGIPDE  220 (288)
T ss_pred             CCCCHH
Confidence            998875

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01224 hutI imidazolonepropionase

Probab=86.42  E-value=16  Score=30.65  Aligned_cols=11  Identities=27%  Similarity=0.244  Sum_probs=9.6

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|++.
T Consensus        41 Glin~H~H~~~   51 (377)
T TIGR01224        41 GLVDPHTHLVF   51 (377)
T ss_pred             cEEecccCccc
Confidence            49999999974

This enzyme catalyzes the third step in histidine degradation.

>PRK09230 cytosine deaminase; Provisional

Probab=86.26  E-value=21  Score=30.87  Aligned_cols=11  Identities=18%  Similarity=0.262  Sum_probs=9.7

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .+||+|+|++.
T Consensus        56 Glid~H~H~~~   66 (426)
T PRK09230         56 PFIEPHIHLDT   66 (426)
T ss_pred             ceeEEEEcccc
Confidence            49999999985

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=86.15  E-value=19  Score=30.16  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------
Q psy4673          26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------   92 (171)
Q Consensus        26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------   92 (171)
                      +..=.|||+.   .+.+ .+.+|-+.|...++.=|+..      +...++.+++..+.-.|=.=+|.=+-.-.       
T Consensus        75 VPValHLDHg---~~~e-~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~  150 (307)
T PRK05835         75 IPVALHLDHG---TTFE-SCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK  150 (307)
T ss_pred             CeEEEECCCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence            4566899985   3554 45678888998765545432      22344455566553212222333221100       


Q ss_pred             C--CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673          93 S--WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus        93 ~--~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                      +  ++  .-++..++++..    -.++||    -|-.. .......+.++   ++++             ..+.|+++|+
T Consensus       151 ~~~~T--dPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~---~I~~-------------~~~iPLVLHG  211 (307)
T PRK05835        151 DAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQ---EVKR-------------LTNIPLVLHG  211 (307)
T ss_pred             cccCC--CHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHH---HHHH-------------HhCCCEEEeC
Confidence            0  21  123334444432    245788    33211 11233444443   4577             7789999999


Q ss_pred             cCCCccc
Q psy4673         163 DSSMMKE  169 (171)
Q Consensus       163 fsg~~~e  169 (171)
                      -||-++|
T Consensus       212 gSGip~e  218 (307)
T PRK05835        212 ASAIPDD  218 (307)
T ss_pred             CCCCchH
Confidence            9998886

>PRK01211 dihydroorotase; Provisional

Probab=86.04  E-value=2.7  Score=36.40  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||.|+|+..+.  ..+|+..--+.|..-||..++..-
T Consensus        47 G~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP   85 (409)
T PRK01211         47 AATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP   85 (409)
T ss_pred             CeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC
Confidence            4899999998643  457888888888888998877753

>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]

Probab=85.99  E-value=0.55  Score=40.82  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=34.7

Q ss_pred             CCCCccceEeeccCCCCCCCC-----CCHHHHH--------HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC
Q psy4673          18 NCFDNYVLIDVGANLTNRKFG-----RDLESVV--------QRAKDSGVQKIIAIGSSLKSSKEALRLARIYP   77 (171)
Q Consensus        18 ~~~~~~~~iDtH~HL~~~~~~-----~d~~~vl--------~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~   77 (171)
                      .-.++|+|||-||||+...+.     +|+-+++        +-++.+||..-.+.| +-.+-++-+.+++.+|
T Consensus        20 ~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~   91 (463)
T COG1904          20 AYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVP   91 (463)
T ss_pred             HhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhhh
Confidence            445789999999999853221     3443332        456788997543333 4444444455555544

>PRK08609 hypothetical protein; Provisional

Probab=85.94  E-value=3.5  Score=37.30  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=26.9

Q ss_pred             eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      .+|.|||.....-..+++++++.|.+.|+..+.+
T Consensus       335 ~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~i  368 (570)
T PRK08609        335 QGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAI  368 (570)
T ss_pred             cCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence            5799999975433357999999999999987554

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=84.77  E-value=20  Score=30.26  Aligned_cols=119  Identities=16%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673          27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S   93 (171)
Q Consensus        27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~   93 (171)
                      ..=.|||+.   .+. +.+.+|-+.|...++.=++..      +...++.+++..+.-.|=.=+|-=+-.-.       .
T Consensus        87 PV~lHLDHg---~~~-e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~  162 (321)
T PRK07084         87 PIVLHLDHG---DSF-ELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHT  162 (321)
T ss_pred             cEEEECCCC---CCH-HHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccc
Confidence            344799985   354 456888889998755545432      22344455566553212222333221100       1


Q ss_pred             CCHHHHHHHHHHhccC----CeEEEe----cCCCCCC--cHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEe
Q psy4673          94 WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQW--ITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHK  162 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~--~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~  162 (171)
                      ++  .-++..++++..    -.++||    -|...+.  ....+.+.++   ++++             .+ +.|+++|+
T Consensus       163 ~T--~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~---~I~~-------------~~~~vPLVLHG  224 (321)
T PRK07084        163 YT--QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILE---EIEK-------------RIPGFPIVLHG  224 (321)
T ss_pred             cC--CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHH---HHHH-------------hcCCCCEEEeC
Confidence            21  123334444332    245688    4432111  1234444443   5666             66 69999999


Q ss_pred             cCCCc
Q psy4673         163 DSSMM  167 (171)
Q Consensus       163 fsg~~  167 (171)
                      -||.+
T Consensus       225 gSg~~  229 (321)
T PRK07084        225 SSSVP  229 (321)
T ss_pred             CCCCc
Confidence            99654

>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]

Probab=83.96  E-value=12  Score=32.17  Aligned_cols=43  Identities=9%  Similarity=-0.043  Sum_probs=21.7

Q ss_pred             HHHHhcCCCEEEE-eCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673          46 QRAKDSGVQKIIA-IGSSLKSSKEALRLARIYPGMVYSTAGIHP   88 (171)
Q Consensus        46 ~~a~~~gv~~~i~-v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP   88 (171)
                      .++...|+..+.. +.........+.+.+.+...+.+.+.++-.
T Consensus       110 ~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~  153 (421)
T COG0402         110 LEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQD  153 (421)
T ss_pred             HHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeecccc
Confidence            4566778876333 222334444455555555444444555444

>PF14488 DUF4434: Domain of unknown function (DUF4434)

Probab=83.80  E-value=17  Score=27.52  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHhcCCCEEEEeCCC-------hh-------------hHHHHHHHHHhcCCcEEEEeeeCCC
Q psy4673          39 RDLESVVQRAKDSGVQKIIAIGSS-------LK-------------SSKEALRLARIYPGMVYSTAGIHPH   89 (171)
Q Consensus        39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~-------------~~~~~~~l~~~~~~~v~~~~GiHP~   89 (171)
                      .+.++.++.+++.|++.+|+.-+.       |.             -...+++.|+++.-.|+.+++.-|.
T Consensus        20 ~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~   90 (166)
T PF14488_consen   20 AQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPD   90 (166)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCch
Confidence            478889999999999987765442       22             2356677788876556666665553

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=83.45  E-value=11  Score=30.83  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhc
Q psy4673          39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIY   76 (171)
Q Consensus        39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~   76 (171)
                      ...+.++++++++||++++++-..++........++++
T Consensus       109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~  146 (265)
T COG0159         109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH  146 (265)
T ss_pred             hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc
Confidence            45677888888888888888877777666555555443

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=83.01  E-value=25  Score=29.14  Aligned_cols=102  Identities=20%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC-
Q psy4673          39 RDLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT-  109 (171)
Q Consensus        39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~-  109 (171)
                      +-..++++..-+.||.+++..|++       .++..++++.+.+. .+++-.-+|+=...    +++.+ ++-+.+++- 
T Consensus        25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~----t~eai-~lak~a~~~G   99 (299)
T COG0329          25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS----TAEAI-ELAKHAEKLG   99 (299)
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc----HHHHH-HHHHHHHhcC
Confidence            346778888999999999998885       45666666655433 22322234443322    22233 333334432 


Q ss_pred             --CeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673         110 --GNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus       110 --~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                        .+..+--||+...    |..++..+-.+|.             ..++|+|+=.
T Consensus       100 ad~il~v~PyY~k~~----~~gl~~hf~~ia~-------------a~~lPvilYN  137 (299)
T COG0329         100 ADGILVVPPYYNKPS----QEGLYAHFKAIAE-------------AVDLPVILYN  137 (299)
T ss_pred             CCEEEEeCCCCcCCC----hHHHHHHHHHHHH-------------hcCCCEEEEe
Confidence              2333446666433    6666666677777             7778877654

>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]

Probab=82.37  E-value=7.8  Score=32.02  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             eccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCh----------hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCC
Q psy4673          28 VGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSL----------KSSKEALRLARIY-PGMVYSTAGIHPHEAKS   93 (171)
Q Consensus        28 tH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~----------~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~   93 (171)
                      +=+||..... ...+.+.+..+.+.||..+++++.|+          .+...++++.+++ .+.+...++.+|..-++
T Consensus        80 ~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~  157 (291)
T COG0685          80 PIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE  157 (291)
T ss_pred             cceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCcc
Confidence            4468876432 24677888999999999999999887          2456677777754 34367788999976543

>PRK00369 pyrC dihydroorotase; Provisional

Probab=81.87  E-value=5.5  Score=34.26  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||.|+|+..+.  ..++++.--..|..-||..++...
T Consensus        48 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP   86 (392)
T PRK00369         48 GAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP   86 (392)
T ss_pred             CEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC
Confidence            4899999997643  347888888888888998877654

>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B

Probab=81.85  E-value=1.3  Score=28.03  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=16.5

Q ss_pred             ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCE
Q psy4673          24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQK   55 (171)
Q Consensus        24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~   55 (171)
                      .|||+|+|+..... ..+.+.....+...||..
T Consensus        35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT   67 (68)
T PF13594_consen   35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT   67 (68)
T ss_dssp             -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred             CeEeeeeccccccccccchhhHHHHHHCcceee
Confidence            49999999873211 122233444444667643

...

>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate

Probab=81.80  E-value=29  Score=28.91  Aligned_cols=11  Identities=27%  Similarity=0.299  Sum_probs=9.7

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|++.
T Consensus        38 g~vn~H~Hl~~   48 (371)
T cd01296          38 GLVDCHTHLVF   48 (371)
T ss_pred             ceeecCCCCcC
Confidence            59999999975

In bacteria, the enzyme is part of histidine utilization (hut) operon.

>PRK09236 dihydroorotase; Reviewed

Probab=81.56  E-value=5.5  Score=34.57  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      .+||+|+|+.....  .++.....+.+...||..++..+.
T Consensus        55 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p~   94 (444)
T PRK09236         55 GMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMPN   94 (444)
T ss_pred             CEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCCC
Confidence            49999999875322  246666778888999998887654

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=81.39  E-value=27  Score=28.18  Aligned_cols=104  Identities=14%  Similarity=0.238  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe
Q psy4673          40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN  111 (171)
Q Consensus        40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v  111 (171)
                      .....++.+.+.||.++++.|+.       .++..++++.+.+. ++.+-..+|+-....    ++.++.. +.+++-.+
T Consensus        19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~----~~~i~~a-~~a~~~Ga   93 (281)
T cd00408          19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANST----REAIELA-RHAEEAGA   93 (281)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccH----HHHHHHH-HHHHHcCC
Confidence            46778888888999998887774       45566666644332 223444466644322    2233333 33344333


Q ss_pred             EE--Ee-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         112 ST--MN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       112 va--IG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      -|  +. -+|+.. +   |.+++...-++|.             ..++|++++.+-+
T Consensus        94 d~v~v~pP~y~~~-~---~~~~~~~~~~ia~-------------~~~~pi~iYn~P~  133 (281)
T cd00408          94 DGVLVVPPYYNKP-S---QEGIVAHFKAVAD-------------ASDLPVILYNIPG  133 (281)
T ss_pred             CEEEECCCcCCCC-C---HHHHHHHHHHHHh-------------cCCCCEEEEECcc
Confidence            33  33 555432 2   4556666677887             7788988876543

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family

Probab=81.20  E-value=7.3  Score=31.23  Aligned_cols=32  Identities=28%  Similarity=0.168  Sum_probs=24.4

Q ss_pred             EeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Q psy4673          26 IDVGANLTNR-KFGRDLESVVQRAKDSGVQKII   57 (171)
Q Consensus        26 iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i   57 (171)
                      +|.|+|.... .-...+++.+++|.+.|+..+.
T Consensus         1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~   33 (253)
T TIGR01856         1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEIC   33 (253)
T ss_pred             CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEE
Confidence            4889998653 2235789999999999998643

This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3rcm_A	287	Crystal Structure Of Efi Target 500140:tatd Family		9e-14
1xwy_A	264	Crystal Structure Of Tatd Deoxyribonuclease From Es		3e-12
2xio_A	301	Structure Of Putative Deoxyribonuclease Tatdn1 Isof		8e-09
1j6o_A	268	Crystal Structure Of Tatd-related Deoxyribonuclease		2e-06
2gzx_A	265	Crystal Structure Of The Tatd Deoxyribonuclease Mw0		2e-04

>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family Hydrolase From Pseudomonas Putida Length = 287

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR---IYPGMVY 81
           LID+G NLTN  F     ++V+RA ++GV + +  G+SL  S++AL L +        ++
Sbjct: 3   LIDIGVNLTNSSFHDQQAAIVERALEAGVTQXLLTGTSLAVSEQALELCQQLDASGAHLF 62
Query: 82  STAGIHPHEAKSWDEDYIDQLRDLVSNT 109
           +TAG+HPH+AK+WD D   QLR L+S  
Sbjct: 63  ATAGVHPHDAKAWDTDSERQLRLLLSEP 90

>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From Escherichia Coli K12 At 2.0 A Resolution Length = 264

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
           Y + D+G NLT+ +F +D + VV  A D+GV  ++  G++L+ S++A +LAR Y    +
Sbjct: 2  EYRMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQY-SSCW 60
Query: 82 STAGIHPHEAKSW 94
          STAG+HPH++  W
Sbjct: 61 STAGVHPHDSSQW 73

>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A Length = 301

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 25  LIDVGANLTNRKF----------GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
            ID+G NLT+  F            DL+ V+ RA + GV+K +  G +L+ SK+AL LA+
Sbjct: 3   FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62
Query: 75  IYPGMVYSTAGIHPHEAKSWDED----YIDQLRDLVSN 108
              GM +ST G HP     ++++    Y+ +L +L  N
Sbjct: 63  TN-GMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAEN 99

>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease (tm0667) From Thermotoga Maritima At 1.8 A Resolution Length = 268

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 26  IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG 85
           +D  A+L   +F  D  +V+   +++ ++ ++ +G +L+ SK++L L++     ++ + G
Sbjct: 14  VDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTS-DRIFCSVG 72
Query: 86  IHPHEAKSWDEDYIDQLRDLVSN 108
           +HPH+AK   ED+I+ L     +
Sbjct: 73  VHPHDAKEVPEDFIEHLEKFAKD 95

>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target Zr237. Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           LID   +L + ++  DL  V+ RA+++GV +   +G +  + + A +L   Y   +Y   
Sbjct: 2   LIDTHVHLNDEQYDDDLSEVITRAREAGVDRXFVVGFNKSTIERAXKLIDEY-DFLYGII 60
Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNT 109
           G HP +A  + E++++ +  L  + 
Sbjct: 61  GWHPVDAIDFTEEHLEWIESLAQHP 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	8e-33
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	2e-32
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	1e-30
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	3e-29
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	4e-24
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	9e-23
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	1e-22
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	5e-21
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	7e-19
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	6e-18
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	3e-16
3guw_A	261	Uncharacterized protein AF_1765; alpha-beta protei	2e-07
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	9e-04

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264

 Score =  116 bits (293), Expect = 8e-33
 Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D + VV  A D+GV  ++  G++L+ S++A +LAR Y    +STA
Sbjct: 5   MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWSTA 63

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSN 108
           G+HPH++  W     + + +L + 
Sbjct: 64  GVHPHDSSQWQAATEEAIIELAAQ 87

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Length = 287

 Score =  116 bits (292), Expect = 2e-32
 Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 3/87 (3%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM---VY 81
           LID+G NLTN  F     ++V+RA ++GV +++  G+SL  S++AL L +        ++
Sbjct: 3   LIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLF 62

Query: 82  STAGIHPHEAKSWDEDYIDQLRDLVSN 108
           +TAG+HPH+AK+WD D   QLR L+S 
Sbjct: 63  ATAGVHPHDAKAWDTDSERQLRLLLSE 89

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301

 Score =  111 bits (280), Expect = 1e-30
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 15/98 (15%)

Query: 25  LIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
            ID+G NLT+  F            DL+ V+ RA + GV+K +  G +L+ SK+AL LA+
Sbjct: 3   FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62

Query: 75  IYPGMVYSTAGIHPHEAKSWDED----YIDQLRDLVSN 108
               M +ST G HP     ++++    Y+ +L +L  N
Sbjct: 63  TNG-MFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAEN 99

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325

 Score =  108 bits (272), Expect = 3e-29
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 25  LIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
            ID+GANLT+  +            D++ V+QRA+ +G+  II     L   K+A+ +  
Sbjct: 28  FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIIN 87

Query: 75  IYPG----MVYSTAGIHPHEAKSWD-EDYIDQLRDLVSN 108
            Y       + +T G+HP        E Y+D+L  L   
Sbjct: 88  KYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEK 126

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Length = 272

 Score = 94.2 bits (235), Expect = 4e-24
 Identities = 22/84 (26%), Positives = 43/84 (51%)

Query: 22  NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
              L+D   +L+   F RDL+ V+++AK + V  ++A+       ++ ++L+  Y G V 
Sbjct: 3   GVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVL 62

Query: 82  STAGIHPHEAKSWDEDYIDQLRDL 105
              G+HP +    ++     L+DL
Sbjct: 63  PCLGVHPVQGLPPEDQRSVTLKDL 86

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268

 Score = 90.3 bits (225), Expect = 9e-23
 Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 21  DNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMV 80
            ++ ++D  A+L   +F  D  +V+   +++ ++ ++ +G +L+ SK++L L++     +
Sbjct: 9   HHHHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-I 67

Query: 81  YSTAGIHPHEAKSWDEDYIDQLRDLVSN 108
           + + G+HPH+AK   ED+I+ L     +
Sbjct: 68  FCSVGVHPHDAKEVPEDFIEHLEKFAKD 95

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265

 Score = 89.9 bits (224), Expect = 1e-22
 Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           LID   +L + ++  DL  V+ RA+++GV ++  +G +  + + A++L   Y   +Y   
Sbjct: 2   LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGII 60

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSN 108
           G HP +A  + E++++ +  L  +
Sbjct: 61  GWHPVDAIDFTEEHLEWIESLAQH 84

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259

 Score = 85.6 bits (213), Expect = 5e-21
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
            ID   +     F  D E+ +QRA  +GV KII   +  ++    L LA  Y   +Y+  
Sbjct: 5   FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAAL 63

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSN 108
           G+HP   +   +  ++QL+  +  
Sbjct: 64  GLHPGMLEKHSDVSLEQLQQALER 87

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Length = 265

 Score = 79.9 bits (198), Expect = 7e-19
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 36  KFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD 95
              +D++ V+ +A    V+  +A+ ++L S      L       V  + G+HP      D
Sbjct: 17  SLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERD-NVVFSCGVHPLNQN--D 73

Query: 96  EDYIDQLRDLVSN 108
              ++ LR L + 
Sbjct: 74  PYDVEDLRRLAAE 86

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} Length = 401

 Score = 79.0 bits (194), Expect = 6e-18
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 54/135 (40%)

Query: 25  LIDVGANLTNRKF----------GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
             D+G NLT+  F            D   +++RA    V+  +  GSS+  S+ A+ L  
Sbjct: 14  YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVS 73

Query: 75  IYPGM--------------------------------------------VYSTAGIHPHE 90
               +                                            +Y+    +P  
Sbjct: 74  SVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSF 133

Query: 91  AKSWDEDYIDQLRDL 105
           A+   ++  D +   
Sbjct: 134 AQGKLKELYDLMNQQ 148

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254

 Score = 72.6 bits (179), Expect = 3e-16
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 40  DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI 99
                V RA +     ++++ ++  + +  L LA   P  V++  G HP        D +
Sbjct: 14  PDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRP-HVWTALGFHPEVVSERAAD-L 71

Query: 100 DQLRDL 105
                 
Sbjct: 72  PWFDRY 77

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Length = 261

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 19/94 (20%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM----- 79
             D   +     F     S + + K++G++++ ++       K    +  ++  +     
Sbjct: 2   YFDSHLHSEGLGF-----SELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEP 56

Query: 80  ---------VYSTAGIHPHEAKSWDEDYIDQLRD 104
                    ++   GIHP       E  +  L +
Sbjct: 57  LRCEAAGVKMHPAVGIHPRCIPPDYEFVLGYLEE 90

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 140 LCEFCQKNFSRKEHLNRHLWVH 161
           +CE C + F+R+EHL RH   H
Sbjct: 4   VCEVCTRAFARQEHLKRHYRSH 25

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C FC K F+RK+++  H+ + 
Sbjct: 43  CPFCFKEFTRKDNMTAHVKII 63

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
           C  C ++FSR +HL  H+  H++
Sbjct: 78  CGVCNRSFSRSDHLALHMKRHQN 100

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           CEFC K F + + +  H    
Sbjct: 41  CEFCGKRFEKPDSVAAHRSKS 61

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C +NFSR +HL  H+  H
Sbjct: 52  CRICMRNFSRSDHLTTHIRTH 72

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 34.6 bits (80), Expect = 9e-04
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C ++FSR +HL  H   H
Sbjct: 14  CPDCDRSFSRSDHLALHRKRH 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	100.0
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	100.0
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	100.0
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	100.0
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	99.97
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	99.97
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	99.97
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	99.96
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	99.95
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	99.94
3guw_A	261	Uncharacterized protein AF_1765; alpha-beta protei	99.93
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	99.92
2ob3_A	330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	99.82
4i6k_A	294	Amidohydrolase family protein; enzyme function ini	99.76
2vc7_A	314	Aryldialkylphosphatase; phosphotriesterase, promis	99.74
3cjp_A	272	Predicted amidohydrolase, dihydroorotase family; s	99.71
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	99.64
1bf6_A	291	Phosphotriesterase homology protein; hypothetical	99.61
4do7_A	303	Amidohydrolase 2; enzyme function initiative, EFI,	99.56
2f6k_A	307	Metal-dependent hydrolase; metal dependent hydroly	99.55
3gtx_A	339	Organophosphorus hydrolase; mutant, amidohydrolase	99.54
2ffi_A	288	2-pyrone-4,6-dicarboxylic acid hydrolase, putativ;	99.53
3irs_A	291	Uncharacterized protein BB4693; structural genomic	99.48
3k2g_A	364	Resiniferatoxin-binding, phosphotriesterase- relat	99.43
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	99.22
2wm1_A	336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	99.19
3rhg_A	365	Putative phophotriesterase; hydrolase, amidohydrol	99.17
2gwg_A	350	4-oxalomesaconate hydratase; TIM-barrel like prote	99.16
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	99.04
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	98.93
3pnz_A	330	Phosphotriesterase family protein; amidohydrolase	98.92
3ovg_A	363	Amidohydrolase; structural genomics, PSI-2, protei	98.67
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	98.65
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	98.45
3tn4_A	360	Phosphotriesterase; lactonase, hydrolase; HET: KCX	98.42
3ij6_A	312	Uncharacterized metal-dependent hydrolase; structu	98.15
3nur_A	357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	98.15
4d9a_A	303	2-pyrone-4,6-dicarbaxylate hydrolase; structural g	98.07
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	97.99
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	97.91
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	97.82
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	97.8
4inf_A	373	Metal-dependent hydrolase; amidohydrolase, metal b	97.78
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	97.62
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	97.6
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	97.58
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	97.54
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	97.34
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	97.19
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	97.1
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	97.08
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	97.0
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	96.83
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	96.81
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	96.78
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	96.77
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	96.4
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	96.25
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	95.65
4ac7_C	570	Urease subunit alpha; hydrolase, bacillus pasteuri	95.49
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	95.49
2qt3_A	403	N-isopropylammelide isopropyl amidohydrolase; N-is	95.31
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	95.14
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	95.04
4dzi_A	423	Putative TIM-barrel metal-dependent hydrolase; ami	94.97
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	94.64
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	94.57
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	94.5
2paj_A	492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	94.48
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	94.38
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	94.2
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	94.13
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	94.07
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	93.97
2z26_A	347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	93.95
3gip_A	480	N-acyl-D-glutamate deacylase; amidohydrolase famil	92.95
4aql_A	476	Guanine deaminase; hydrolase, purine metabolism; H	92.92
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	92.83
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	92.77
3e38_A	343	Two-domain protein containing predicted PHP-like d	92.49
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	92.48
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	92.36
2anu_A	255	Hypothetical protein TM0559; predicted metal-depen	92.09
3dcp_A	283	Histidinol-phosphatase; HISK, histidine biosynthes	92.05
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	91.95
2ogj_A	417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	91.65
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	91.36
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	91.32
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	90.32
2p9b_A	458	Possible prolidase; protein structure initiative I	90.21
3b0x_A	575	DNA polymerase beta family (X family); structural	89.85
3pnu_A	359	Dihydroorotase; TIM barrel, zinc binding, hydrolas	89.65
3iac_A	473	Glucuronate isomerase; IDP02065, structural genom	89.57
2q01_A	497	Uronate isomerase; structural genomics, protein st	87.62
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	87.11
1j5s_A	463	Uronate isomerase; TM0064, structural genomics, JC	86.96
3v7p_A	427	Amidohydrolase family protein; iron binding site,	86.48
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	85.38
2w9m_A	578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	83.3
2qee_A	437	BH0493 protein; amidohydrolase, structural genomic	81.97
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	81.43
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	80.56
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	80.02

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}

Probab=100.00  E-value=1.2e-37  Score=254.20  Aligned_cols=148  Identities=29%  Similarity=0.425  Sum_probs=135.3

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCC---cEEEEeeeCCCCCCCCCHHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPG---MVYSTAGIHPHEAKSWDEDYI   99 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~---~v~~~~GiHP~~~~~~~~~~~   99 (171)
                      |++|||||||+...|..|+++++++|+++||.+++++|+++++|.++++++++||+   ++|+++|+||+++.++.++.+
T Consensus         1 M~~iD~H~HL~~~~~~~d~~~vl~~a~~~gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~~~~~~~   80 (287)
T 3rcm_A            1 MQLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSE   80 (287)
T ss_dssp             CCEEEEEECTTCGGGTTCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGGCCTTHH
T ss_pred             CceEEEeecCCchhcccCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcCccccCCHHHH
Confidence            68999999999988889999999999999999999999999999999999999996   589999999999987777789


Q ss_pred             HHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hc---CceEEEec
Q psy4673         100 DQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LN---RHLWVHKD  163 (171)
Q Consensus       100 ~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~---~p~iiH~f  163 (171)
                      +.|++++.+++++|||    ||+++..+++.|+++|++||+||++     +||||+|++++++    +.   ..+|+|||
T Consensus        81 ~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~~~~l~il~~~~~~~~~~V~H~f  160 (287)
T 3rcm_A           81 RQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCF  160 (287)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHTTGGGCSCEEECSC
T ss_pred             HHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcHHHHHHHHHHcCCCCCeEEEEeC
Confidence            9999999999999988    9999878899999999999999999     8999999998774    22   24899999


Q ss_pred             CCCcccc
Q psy4673         164 SSMMKEL  170 (171)
Q Consensus       164 sg~~~el  170 (171)
                      +|+.+++
T Consensus       161 sG~~e~a  167 (287)
T 3rcm_A          161 TGEREAL  167 (287)
T ss_dssp             CCCHHHH
T ss_pred             CCCHHHH
Confidence            9998765

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}

Probab=100.00  E-value=1.3e-37  Score=257.82  Aligned_cols=149  Identities=25%  Similarity=0.387  Sum_probs=132.7

Q ss_pred             ccceEeeccCCCCCCC----------CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCC----cEEEEeeeC
Q psy4673          22 NYVLIDVGANLTNRKF----------GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPG----MVYSTAGIH   87 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~----------~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~----~v~~~~GiH   87 (171)
                      .|++||+||||++..|          ..|+++++++|+++||.++|++|+++++|.++++|+++||+    .+|+++|+|
T Consensus        25 ~m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~~~~~~~~~La~~~~~~~~~~v~~~~GiH  104 (325)
T 3ipw_A           25 AQQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQNLTNIKLVTTIGVH  104 (325)
T ss_dssp             CCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHGGGCSSEEEEEECCC
T ss_pred             CCCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHHCCCcccceEEEEEEEC
Confidence            4789999999999988          88999999999999999999999999999999999999993    489999999


Q ss_pred             CCCCCCCCHH-HHHHHHHHhcc--CCeEEEe----cCCC-CCCcHHHHHHHHHHHHHHhhH------HHHhhhhhHhHhh
Q psy4673          88 PHEAKSWDED-YIDQLRDLVSN--TGNSTMN----RYNS-SQWITEIKQTLFTTFVDITAL------CEFCQKNFSRKEH  153 (171)
Q Consensus        88 P~~~~~~~~~-~~~~l~~~l~~--~~vvaIG----Dy~~-~~~~~~~Q~~~F~~ql~lA~~------~iH~r~a~~~~~~  153 (171)
                      ||++.++.++ .++.|++++..  +++||||    ||++ +..+++.|+++|++||+||++      +||||+|++++++
T Consensus       105 P~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~  184 (325)
T 3ipw_A          105 PTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQ  184 (325)
T ss_dssp             GGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHH
T ss_pred             cchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHH
Confidence            9999876554 78999998875  4899988    9998 677899999999999999998      7999999998764


Q ss_pred             h----c---CceEEEecCCCcccc
Q psy4673         154 L----N---RHLWVHKDSSMMKEL  170 (171)
Q Consensus       154 ~----~---~p~iiH~fsg~~~el  170 (171)
                      +    .   .++|||||+|+.+++
T Consensus       185 iL~~~~~~~~~gViH~FsGs~e~a  208 (325)
T 3ipw_A          185 LNKELGYNGCKGVVHCFDGTEEEM  208 (325)
T ss_dssp             HHHHTTCTTSCEEECSCCCCHHHH
T ss_pred             HHHhcCCCCCcEEEEECCCCHHHH
Confidence            2    2   247999999998875

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-35  Score=247.28  Aligned_cols=150  Identities=23%  Similarity=0.381  Sum_probs=127.9

Q ss_pred             CccceEeeccCCCCCCCC----------CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCc----EEEEeee
Q psy4673          21 DNYVLIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM----VYSTAGI   86 (171)
Q Consensus        21 ~~~~~iDtH~HL~~~~~~----------~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~----v~~~~Gi   86 (171)
                      .+|+|||+||||++..|.          .|+++|++||+++||.++|++|+++++|.++++|+++||+.    +|+++|+
T Consensus        10 ~~~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~~l~~s~~~~~La~~~~~~~~~~l~~tvGv   89 (401)
T 3e2v_A           10 SPLKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLKLYHTIGV   89 (401)
T ss_dssp             -CCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHTTTCSSEEEEEECC
T ss_pred             CCCCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHHCCCccccceEEEEEE
Confidence            457899999999998775          79999999999999999999999999999999999999974    6999999


Q ss_pred             CCCCCCCCCHH------------------------------------HHHHHHHHh------ccCCeEEEe----cCCC-
Q psy4673          87 HPHEAKSWDED------------------------------------YIDQLRDLV------SNTGNSTMN----RYNS-  119 (171)
Q Consensus        87 HP~~~~~~~~~------------------------------------~~~~l~~~l------~~~~vvaIG----Dy~~-  119 (171)
                      ||+++.++.+.                                    .+++|++++      ..++|||||    ||++ 
T Consensus        90 HP~~~~e~~~~~~~~~~~~~~~~p~~d~~~~~~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~vvAIGEiGLDy~~~  169 (401)
T 3e2v_A           90 HPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRF  169 (401)
T ss_dssp             CGGGGGGGC------------------CHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHCSTTCSEEEEEEEEEETTCT
T ss_pred             CcChhhhcccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHhhhhccCCcEEEEEEEeCCCCcC
Confidence            99988655332                                    477777776      458899988    9988 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhH---------HHHhhhhhHhHhhh----c-----------------------------Cc
Q psy4673         120 SQWITEIKQTLFTTFVDITAL---------CEFCQKNFSRKEHL----N-----------------------------RH  157 (171)
Q Consensus       120 ~~~~~~~Q~~~F~~ql~lA~~---------~iH~r~a~~~~~~~----~-----------------------------~p  157 (171)
                      ...+++.|+++|++||+||.+         +||||+|+++++++    .                             ..
T Consensus       170 ~~~~~e~Q~~~F~~QL~LA~e~~~~~~lPv~IH~R~A~~d~l~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (401)
T 3e2v_A          170 HYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRK  249 (401)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTSSHHHHTSCEEEEEESCHHHHHHHHHHHHHCEECSSCTTCGGGC--CCTTCEECCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhccCCCeEEEEecchHHHHHHHHHHhhccccccccccccccccccccccccccCCCCc
Confidence            567899999999999999984         79999999987632    1                             34


Q ss_pred             eEEEecCCCcccc
Q psy4673         158 LWVHKDSSMMKEL  170 (171)
Q Consensus       158 ~iiH~fsg~~~el  170 (171)
                      +|+|||+|+.+++
T Consensus       250 ~V~H~FsGs~e~a  262 (401)
T 3e2v_A          250 LVVHSFTGSAIDL  262 (401)
T ss_dssp             EEECSCCCCHHHH
T ss_pred             EEEEcCCCCHHHH
Confidence            8999999999875

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0

Probab=100.00  E-value=2.8e-35  Score=236.56  Aligned_cols=140  Identities=16%  Similarity=0.137  Sum_probs=119.1

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL  102 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l  102 (171)
                      |++|||||||+..   +|+++++++|+++||.. +++|+++++|.++++++++||+ +|+++|+|||++.+.. ++++.|
T Consensus         1 m~liDtH~HL~~~---~d~~~vl~~a~~~gV~~-i~v~~~~~~~~~~~~la~~~~~-v~~~~GiHP~~~~~~~-~~l~~l   74 (254)
T 3gg7_A            1 MSLIDFHVHLDLY---PDPVAVARACEERQLTV-LSVTTTPAAWRGTLALAAGRPH-VWTALGFHPEVVSERA-ADLPWF   74 (254)
T ss_dssp             -CCEEEEECGGGS---SSHHHHHHHHHHTTCEE-EECCSSGGGHHHHHGGGTTCTT-EEECBCCCGGGTTTTG-GGTHHH
T ss_pred             CceEEEeeCCCCC---CCHHHHHHHHHHCCCcE-EEecCCHHHHHHHHHHHHhCCC-eEEEEeeCcccccccH-HHHHHH
Confidence            6799999999963   59999999999999986 4569999999999999999997 8999999999987654 578888


Q ss_pred             HHHhccCCeEEEe----cCCCCC-CcHHHHHHHHHHHHHHhhH-----H-HHhhhhhHhHhhh----cC--ceEEEecCC
Q psy4673         103 RDLVSNTGNSTMN----RYNSSQ-WITEIKQTLFTTFVDITAL-----C-EFCQKNFSRKEHL----NR--HLWVHKDSS  165 (171)
Q Consensus       103 ~~~l~~~~vvaIG----Dy~~~~-~~~~~Q~~~F~~ql~lA~~-----~-iH~r~a~~~~~~~----~~--p~iiH~fsg  165 (171)
                      ++++.  +++|||    ||+++. .+++.|+++|++||+||++     + ||||+|+++++++    ..  ++|+|||+|
T Consensus        75 ~~~~~--~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~~~~~~il~~~~~~~~~v~H~fsG  152 (254)
T 3gg7_A           75 DRYLP--ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLEANPRSGTPILHWYSG  152 (254)
T ss_dssp             HHHGG--GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHCGGGEEEEEETCCS
T ss_pred             HHHhh--hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcHHHHHHHHHHcCCCCcEEEEeCCC
Confidence            88884  456766    999863 6889999999999999999     6 9999999987643    22  359999999


Q ss_pred             Ccccc
Q psy4673         166 MMKEL  170 (171)
Q Consensus       166 ~~~el  170 (171)
                      +.+++
T Consensus       153 ~~e~a  157 (254)
T 3gg7_A          153 SVTEL  157 (254)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98764

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=219.56  Aligned_cols=147  Identities=24%  Similarity=0.387  Sum_probs=126.3

Q ss_pred             cceEeeccCCCCCCCC----------CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC
Q psy4673          23 YVLIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK   92 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~----------~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~   92 (171)
                      ||+||+||||+...|.          .++++++++|+++||..+|++|+++++|.+++++++++|+ +++++|+||+.+.
T Consensus         1 ~~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~~~~~~~~~~la~~~~~-v~~~~GiHP~~~~   79 (301)
T 2xio_A            1 MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGM-FFSTVGCHPTRCG   79 (301)
T ss_dssp             CCEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCSHHHHHHHHHHHTTCTT-EEEEECCCGGGTH
T ss_pred             CeEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCC-EEEEEEECcChhh
Confidence            6799999999987775          6899999999999999999999999999999999999997 8999999999875


Q ss_pred             CCC----HHHHHHHHHHhcc--CCeEEEe----cCCC-CCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh---
Q psy4673          93 SWD----EDYIDQLRDLVSN--TGNSTMN----RYNS-SQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH---  153 (171)
Q Consensus        93 ~~~----~~~~~~l~~~l~~--~~vvaIG----Dy~~-~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~---  153 (171)
                      ++.    +..+++|++++..  ++++|||    ||++ +..+++.|+++|++|+++|++     +||||+|++++++   
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~a~~~~~~il~  159 (301)
T 2xio_A           80 EFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITK  159 (301)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             hCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecCchHHHHHHHH
Confidence            432    2457888888875  4899987    9987 556789999999999999999     8999999987653   


Q ss_pred             -hc---CceEEEecCCCcccc
Q psy4673         154 -LN---RHLWVHKDSSMMKEL  170 (171)
Q Consensus       154 -~~---~p~iiH~fsg~~~el  170 (171)
                       ..   ..+|+|||+|+.+++
T Consensus       160 ~~~~~~~~~i~H~f~g~~~~~  180 (301)
T 2xio_A          160 RNRDRCVGGVVHSFDGTKEAA  180 (301)
T ss_dssp             HTGGGSSCEEETTCCCCHHHH
T ss_pred             hccCCCCcEEEEccCCCHHHH
Confidence             22   357999999987654

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12

Probab=99.97  E-value=8.9e-31  Score=209.08  Aligned_cols=147  Identities=27%  Similarity=0.469  Sum_probs=128.8

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL  102 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l  102 (171)
                      |++||+|||++...+..++++++++++++||..+|++++++++++.++++++++|+ +++++|+||+.+.++.++.+++|
T Consensus         3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~-i~~~~G~hP~~~~~~~~~~~~~l   81 (264)
T 1xwy_A            3 YRMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWSTAGVHPHDSSQWQAATEEAI   81 (264)
T ss_dssp             --CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHSTT-EEEEECCCGGGGGGCCHHHHHHH
T ss_pred             CcEEEEeeCCCChhhccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCC-EEEEEEECCcccccCCHHHHHHH
Confidence            67999999999877778899999999999999999999999999999999999997 89999999999877777788999


Q ss_pred             HHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h---cCceEEEecCCC
Q psy4673         103 RDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L---NRHLWVHKDSSM  166 (171)
Q Consensus       103 ~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~---~~p~iiH~fsg~  166 (171)
                      ++++.+++++|||    ||++...+.+.|.++|++|+++|.+     +||||++++++++    .   ..++|+|||+|+
T Consensus        82 ~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a~~~~~~il~~~~~~~~~~v~H~~~g~  161 (264)
T 1xwy_A           82 IELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGT  161 (264)
T ss_dssp             HHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHGGGGGGSSCEEECSCCCC
T ss_pred             HHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCchHHHHHHHHhcCCCCCcEEEEccCCC
Confidence            9999989999887    9988766789999999999999999     8999999887653    2   245789999998


Q ss_pred             cccc
Q psy4673         167 MKEL  170 (171)
Q Consensus       167 ~~el  170 (171)
                      .+++
T Consensus       162 ~~~~  165 (264)
T 1xwy_A          162 REEM  165 (264)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12

Probab=99.97  E-value=1.3e-30  Score=207.68  Aligned_cols=147  Identities=20%  Similarity=0.248  Sum_probs=129.8

Q ss_pred             ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHH
Q psy4673          22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQ  101 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~  101 (171)
                      .|++||+|||++...+..++++++++++++||..++.+|+++++|.++.++++++|+ +++++|+||+++.++.+..+++
T Consensus         2 ~m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~G~hP~~~~~~~~~~~~~   80 (259)
T 1zzm_A            2 ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAALGLHPGMLEKHSDVSLEQ   80 (259)
T ss_dssp             CCCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCSGGGHHHHHHHHHHCTT-EEEEECCCGGGGGGCCHHHHHH
T ss_pred             CceEEEeeecCCchhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC-eEEEEEecccccccCCHHHHHH
Confidence            377999999999988888999999999999999999999999999999999999997 8999999999987777778899


Q ss_pred             HHHHhcc--CCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hc--CceEEEecC
Q psy4673         102 LRDLVSN--TGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LN--RHLWVHKDS  164 (171)
Q Consensus       102 l~~~l~~--~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~--~p~iiH~fs  164 (171)
                      |++++.+  ++++|||    ||++...+.+.|.++|++|+++|.+     +||||++++++++    .+  .++|+|||+
T Consensus        81 l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~~~~~~il~~~~~~~~~i~H~~~  160 (259)
T 1zzm_A           81 LQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFS  160 (259)
T ss_dssp             HHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHHCCTTCEEETTCC
T ss_pred             HHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccHHHHHHHHHhcCCCCCEEEEcCC
Confidence            9988876  7888887    9988766789999999999999999     8999999887653    33  358999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |+.++
T Consensus       161 g~~~~  165 (259)
T 1zzm_A          161 GSLQQ  165 (259)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            98754

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}

Probab=99.96  E-value=7.2e-30  Score=204.80  Aligned_cols=149  Identities=15%  Similarity=0.234  Sum_probs=123.5

Q ss_pred             ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCC-CCC-----CC
Q psy4673          22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHE-AKS-----WD   95 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~-~~~-----~~   95 (171)
                      .|++||+|||++...+..++++++++++++||..+|++++++++|+.++++++++|+.+++++|+||++ +..     +.
T Consensus         3 ~m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~~i~~~~GihP~~~~~~~~~~~~~   82 (272)
T 2y1h_A            3 GVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQGLPPEDQRSVT   82 (272)
T ss_dssp             CCCEEEEEECTTSGGGTTTHHHHHHHHHHTTEEEEEECCSSGGGHHHHHHHHHHTTTTEEEEECCCSBC-------CBCC
T ss_pred             CCcEEEEeeCCCchhhhcCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEEECCCccccccccccCC
Confidence            467999999999887888999999999999999999999999999999999999996689999999998 554     45


Q ss_pred             HHHHHHHHHHhcc--CCeEEEe----cC--CCCC--CcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hc-
Q psy4673          96 EDYIDQLRDLVSN--TGNSTMN----RY--NSSQ--WITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LN-  155 (171)
Q Consensus        96 ~~~~~~l~~~l~~--~~vvaIG----Dy--~~~~--~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~-  155 (171)
                      .+.+++|++++.+  ++++|||    ||  ++..  .+.+.|+++|++|+++|++     +||||+|++++++    .+ 
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~~~~~~il~~~~~  162 (272)
T 2y1h_A           83 LKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGA  162 (272)
T ss_dssp             HHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcHHHHHHHHHhCCC
Confidence            5678888888763  5778877    98  4422  2478899999999999999     8999999887654    22 


Q ss_pred             CceEEEecCCCcccc
Q psy4673         156 RHLWVHKDSSMMKEL  170 (171)
Q Consensus       156 ~p~iiH~fsg~~~el  170 (171)
                      .++|+|+|+|+.+++
T Consensus       163 ~~~v~H~~~g~~~~~  177 (272)
T 2y1h_A          163 EKVLLHAFDGRPSVA  177 (272)
T ss_dssp             CSEEEETCCSCHHHH
T ss_pred             CCEEEEccCCCHHHH
Confidence            358889999987543

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12

Probab=99.95  E-value=1.4e-28  Score=197.77  Aligned_cols=146  Identities=19%  Similarity=0.375  Sum_probs=128.3

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHH
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLR  103 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~  103 (171)
                      -++||||||+...|..++++++++|+++||.++|++++++++++.++++++++|+ +++++|+||+.+.++.++.+++|+
T Consensus        12 ~~~~~~~hl~~~~~~~~~~~~l~~~~~~GV~~~v~~~~~~~~~~~~~~l~~~~p~-i~~~~G~hP~~~~~~~~~~~~~l~   90 (268)
T 1j6o_A           12 HMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-IFCSVGVHPHDAKEVPEDFIEHLE   90 (268)
T ss_dssp             CEEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSSHHHHHHHHHHHTTCTT-EEEEECCCGGGGGGCCTTHHHHHH
T ss_pred             cccccccCCCChhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCC-EEEEEeeccccccccCHHHHHHHH
Confidence            3789999999988889999999999999999999999999999999999999997 899999999987766556789999


Q ss_pred             HHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h---cCceEEEecCCCc
Q psy4673         104 DLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L---NRHLWVHKDSSMM  167 (171)
Q Consensus       104 ~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~---~~p~iiH~fsg~~  167 (171)
                      +++..++++|||    ||+++..+...|.++|++|+++|.+     +||||++..++++    +   +.++|+|+|+|+.
T Consensus        91 ~~~~~~~~~~iGe~Gld~~~~~~~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~~~~~~~il~~~p~~~~~~I~H~~~g~~  170 (268)
T 1j6o_A           91 KFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDY  170 (268)
T ss_dssp             HHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHSCCCSSCEEETTCCSCH
T ss_pred             HHhccCCEEEEEccccCCcccCCChHHHHHHHHHHHHHHHHhCCCEEEEeCchHHHHHHHHHhcCCCCCCEEEEcCCCCH
Confidence            999888999887    9988656688999999999999999     8999998876553    2   3457889999987


Q ss_pred             ccc
Q psy4673         168 KEL  170 (171)
Q Consensus       168 ~el  170 (171)
                      +++
T Consensus       171 ~~~  173 (268)
T 1j6o_A          171 EWA  173 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12

Probab=99.94  E-value=1.6e-26  Score=183.97  Aligned_cols=145  Identities=17%  Similarity=0.180  Sum_probs=123.9

Q ss_pred             cceEeeccCCCCCCC---CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHH
Q psy4673          23 YVLIDVGANLTNRKF---GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI   99 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~---~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~   99 (171)
                      ||+||+|||++...+   ..++++++++++++||..+|++++++++++.+.++++++|+ +++++|+||+...+..  .+
T Consensus         1 m~~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~p~-~~~~~g~hP~~~~~~~--~~   77 (265)
T 1yix_A            1 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDN-VVFSCGVHPLNQNDPY--DV   77 (265)
T ss_dssp             CCEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSSHHHHHHHHHHHCSCTT-EEEEECCCTTCCSSCC--CH
T ss_pred             CcEEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCC-eEEEEEeCCCcccccc--hH
Confidence            679999999998766   67899999999999999999999999999999999999997 8999999999876432  36


Q ss_pred             HHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h---cCceEEEec
Q psy4673         100 DQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L---NRHLWVHKD  163 (171)
Q Consensus       100 ~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~---~~p~iiH~f  163 (171)
                      ++|++++.+++++|||    |+++...+...|.++|++|+++|.+     +|||+++..++++    .   +.++|+|+|
T Consensus        78 ~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~~~p~~~~v~H~~  157 (265)
T 1yix_A           78 EDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCF  157 (265)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHTTGGGTCEEETTC
T ss_pred             HHHHHHhccCCeEEEEccccCCCcCCCChHHHHHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHhcCCCCCCEEEEcC
Confidence            7888888888988887    9887666788999999999999998     7999998876542    2   235889999


Q ss_pred             CCCcccc
Q psy4673         164 SSMMKEL  170 (171)
Q Consensus       164 sg~~~el  170 (171)
                      +|+.+++
T Consensus       158 ~~~~~~~  164 (265)
T 1yix_A          158 TEDRETA  164 (265)
T ss_dssp             CSCHHHH
T ss_pred             CCCHHHH
Confidence            9987653

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}

Probab=99.93  E-value=7.7e-27  Score=188.04  Aligned_cols=125  Identities=10%  Similarity=0.104  Sum_probs=96.9

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh----------hhHHHHHHH----HHhcCCcEEEEeeeCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL----------KSSKEALRL----ARIYPGMVYSTAGIHPH   89 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~----------~~~~~~~~l----~~~~~~~v~~~~GiHP~   89 (171)
                      |+|||||||+...|     +.+++|+++||.+++++|+++          +.|++++++    +++||..+|+++|+||+
T Consensus         1 m~iDtH~Hld~~~~-----~~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~GiHP~   75 (261)
T 3guw_A            1 MYFDSHLHSEGLGF-----SELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGIHPR   75 (261)
T ss_dssp             -CCBCCCCGGGCCH-----HHHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCCCGG
T ss_pred             CeEEeccCCCCCCh-----HHHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEECcc
Confidence            58999999997644     358999999999999999886          567788754    77887568999999999


Q ss_pred             CCCCCCHHHHHHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh-----hhHhHhh--
Q psy4673          90 EAKSWDEDYIDQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK-----NFSRKEH--  153 (171)
Q Consensus        90 ~~~~~~~~~~~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~-----a~~~~~~--  153 (171)
                      ++.+..++.+    +++.+++++|||    ||++     +.|+++|++||+||++     +||||+     |++++++  
T Consensus        76 ~~~~~~~~~~----~~l~~~~vvaIGEiGLD~~~-----~~Q~~~f~~ql~lA~e~~lPv~iH~r~~~~~~a~~~~~~il  146 (261)
T 3guw_A           76 CIPPDYEFVL----GYLEEGEWVAFGEIGLELVT-----DEEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEIL  146 (261)
T ss_dssp             GCCTTTHHHH----HHHTTSCCSCEEEEECSSCC-----HHHHHHHHHHHHHHHHHTCCEEEECCSSSTTHHHHHHHHHH
T ss_pred             cccccHHHHH----HHhCcCCeEEEEEecCCCCh-----HHHHHHHHHHHHHHHHhCCeEEEEcCCCcccchHHHHHHHH
Confidence            9876544333    334458898888    9864     6899999999999999     899985     4676653  


Q ss_pred             --hcC----ceEEEe
Q psy4673         154 --LNR----HLWVHK  162 (171)
Q Consensus       154 --~~~----p~iiH~  162 (171)
                        .+.    .+|+||
T Consensus       147 ~~~~~~~~~~vi~H~  161 (261)
T 3guw_A          147 ESLDFPADLAVIDHV  161 (261)
T ss_dssp             HHTTCCTTSEEEESC
T ss_pred             HHcCCCCCCEEEEeC
Confidence              232    256799

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=99.92  E-value=5.9e-25  Score=174.61  Aligned_cols=145  Identities=18%  Similarity=0.312  Sum_probs=125.5

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHH
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLR  103 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~  103 (171)
                      |+||+|||++...+..++++++++++..||.++|++++++++++.+.++++++|+ +++++|+||+...++.++.+++|+
T Consensus         1 m~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~p~-~~~~~g~~P~~~~~~~~~~~~~l~   79 (265)
T 2gzx_A            1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGIIGWHPVDAIDFTEEHLEWIE   79 (265)
T ss_dssp             -CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHHHHCTT-EEEEECCCGGGGGGCCHHHHHHHH
T ss_pred             CeEEEeeCCCCcccccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCC-EEEEEEeccCccccCCHHHHHHHH
Confidence            4899999999877777899999999999999999999999999999999999997 899999999987766667899999


Q ss_pred             HHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHh----hhc---CceEEEecCCCc
Q psy4673         104 DLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKE----HLN---RHLWVHKDSSMM  167 (171)
Q Consensus       104 ~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~----~~~---~p~iiH~fsg~~  167 (171)
                      +++..++++|||    |+++...+...|.+.|++|+++|.+     +||++++..+++    ++.   .++|+|+|+|+.
T Consensus        80 ~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~p~~~~~~i~H~~~g~~  159 (265)
T 2gzx_A           80 SLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSP  159 (265)
T ss_dssp             HHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHTTGGGTCEEETTCCSCH
T ss_pred             HHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecccHHHHHHHHHhcCCCCCcEEEEcCCCCH
Confidence            999888999888    8887555678899999999999999     799999877654    233   568999999876


Q ss_pred             cc
Q psy4673         168 KE  169 (171)
Q Consensus       168 ~e  169 (171)
                      ++
T Consensus       160 ~~  161 (265)
T 2gzx_A          160 EI  161 (265)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...

Probab=99.82  E-value=8.2e-21  Score=157.09  Aligned_cols=146  Identities=8%  Similarity=0.100  Sum_probs=105.7

Q ss_pred             CCCccceEeeccCCCC--CCC-----C-----CCHHH-H---HHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcE
Q psy4673          19 CFDNYVLIDVGANLTN--RKF-----G-----RDLES-V---VQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMV   80 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~--~~~-----~-----~d~~~-v---l~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v   80 (171)
                      +++.|.+||+||||+.  ..|     +     ++++. +   +++++++||..++.++++  ..++..+++++++++..+
T Consensus        11 ~~~~lGliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i   90 (330)
T 2ob3_A           11 TISEAGFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHI   90 (330)
T ss_dssp             CHHHHCSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEE
T ss_pred             CHHHCCCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcE
Confidence            3455789999999986  443     3     35555 4   899999999999999986  468999999999998348


Q ss_pred             EEEeeeCC---CCCCCCCHHHH-HHHHHHh----c-c-CCeE--EEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HH
Q psy4673          81 YSTAGIHP---HEAKSWDEDYI-DQLRDLV----S-N-TGNS--TMN-RYNSSQWITEIKQTLFTTFVDITAL-----CE  142 (171)
Q Consensus        81 ~~~~GiHP---~~~~~~~~~~~-~~l~~~l----~-~-~~vv--aIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~i  142 (171)
                      |+++|+||   .++.....+.+ +.+.+.+    . . .+++  .|| |  +.  ..+.|+++|++|+++|++     +|
T Consensus        91 ~~~~G~hp~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld--~~--~~~~q~~~f~~q~~lA~~~glPv~i  166 (330)
T 2ob3_A           91 VAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT--GK--ATPFQELVLKAAARASLATGVPVTT  166 (330)
T ss_dssp             ECEEECCSCCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECS--SS--CCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEecCCcCCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCC--CC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence            99999995   33323334455 4455544    2 1 2444  588 9  32  347899999999999999     89


Q ss_pred             Hh----hhhhHhHhh----hcCc----eEEEec-CCCccc
Q psy4673         143 FC----QKNFSRKEH----LNRH----LWVHKD-SSMMKE  169 (171)
Q Consensus       143 H~----r~a~~~~~~----~~~p----~iiH~f-sg~~~e  169 (171)
                      |+    |+|+ ++++    .+.+    +|.||| +|+.++
T Consensus       167 H~~~~~r~a~-e~l~iL~~~g~~~~~~~i~H~f~~~~~e~  205 (330)
T 2ob3_A          167 HTAASQRDGE-QQAAIFESEGLSPSRVCIGHSDDTDDLSY  205 (330)
T ss_dssp             ECCGGGTHHH-HHHHHHHHTTCCGGGEEECSGGGCCCHHH
T ss_pred             ECCCCCCCHH-HHHHHHHHcCcCcccEEEeCCCCCCCHHH
Confidence            99    9998 6442    2332    688999 788754

>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}

Probab=99.76  E-value=1.9e-18  Score=140.34  Aligned_cols=142  Identities=10%  Similarity=0.085  Sum_probs=104.4

Q ss_pred             cCCCCCCccceEeeccCCCCCCC------------CCCHHHHHHHHHhcCCCEEEEeCCChh--hHHHHHHHHHhcCCcE
Q psy4673          15 KLTNCFDNYVLIDVGANLTNRKF------------GRDLESVVQRAKDSGVQKIIAIGSSLK--SSKEALRLARIYPGMV   80 (171)
Q Consensus        15 ~~~~~~~~~~~iDtH~HL~~~~~------------~~d~~~vl~~a~~~gv~~~i~v~~~~~--~~~~~~~l~~~~~~~v   80 (171)
                      .+-++..++++||||||++...|            +.++++++++++++||.++|+++.+..  +.+.++++++++|+++
T Consensus        17 ~~~~~~~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~~p~r~   96 (294)
T 4i6k_A           17 NLYFQSMKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQYPDRL   96 (294)
T ss_dssp             --------CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHHSTTTE
T ss_pred             cccccCCCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHHCCCeE
Confidence            35567788899999999998766            578999999999999999999987763  3566788899999888


Q ss_pred             EEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh-HhHh-
Q psy4673          81 YSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNF-SRKE-  152 (171)
Q Consensus        81 ~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~-~~~~-  152 (171)
                      ++++|+||..    .+   ++|+++.+ .+++||| +++.. ...+.|...|..|+++|.+     +||+|.+. .++. 
T Consensus        97 ~g~~~v~P~~----~~---~eL~~l~~-~gv~Gi~l~~~~~-~~~~~~~~~~~~~~~~a~~~glpv~iH~~~~~l~~~~~  167 (294)
T 4i6k_A           97 KGIAVVQHTT----TF---NELVNLKA-QGIVGVRLNLFGL-NLPALNTPDWQKFLRNVESLNWQVELHAPPKYLVQLLP  167 (294)
T ss_dssp             EEEECCCTTC----CH---HHHHHHHT-TTEEEEEEECTTS-CCCCSSSHHHHHHHHHHHHTTCEEEEECCHHHHHHHHH
T ss_pred             EEEEEeCCcc----cH---HHHHHHHH-CCCcEEEeccCCC-CCCCcccHHHHHHHHHHHHcCCEEEEeeCcchHHHHHH
Confidence            8889999964    22   45666554 4899999 76532 2223477999999999998     79999875 4443 


Q ss_pred             ---hhcCceEEEecCC
Q psy4673         153 ---HLNRHLWVHKDSS  165 (171)
Q Consensus       153 ---~~~~p~iiH~fsg  165 (171)
                         ++.+++|+|.+.+
T Consensus       168 ~l~~~p~~~Vi~H~g~  183 (294)
T 4i6k_A          168 QLNEYSFDVVIDHFGR  183 (294)
T ss_dssp             HHTTSSSCEEESGGGC
T ss_pred             HHHHCCCCEEEECCCC
Confidence               3446688888765

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*

Probab=99.74  E-value=9.1e-19  Score=142.40  Aligned_cols=148  Identities=11%  Similarity=0.039  Sum_probs=102.9

Q ss_pred             CCCccceEeeccCCCC--CCC-----C-----CCHHHH---HHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEE
Q psy4673          19 CFDNYVLIDVGANLTN--RKF-----G-----RDLESV---VQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVY   81 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~--~~~-----~-----~d~~~v---l~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~   81 (171)
                      +++.|.+||+|||+..  ..|     .     .+.+.+   ++++.++||..++.++++  ..++..+++++++++..+|
T Consensus        12 ~~~~~G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~   91 (314)
T 2vc7_A           12 ESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLV   91 (314)
T ss_dssp             CGGGCCSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEE
T ss_pred             CHHHcCCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEE
Confidence            4456789999999975  223     2     344455   488999999999999977  4568888999999874589


Q ss_pred             EEeeeCCCCCC-CC-CHHHHHHHHHHhccCCeEEEe-------------cCCCCCCcHHHHHHHHHHHHHHhhH-----H
Q psy4673          82 STAGIHPHEAK-SW-DEDYIDQLRDLVSNTGNSTMN-------------RYNSSQWITEIKQTLFTTFVDITAL-----C  141 (171)
Q Consensus        82 ~~~GiHP~~~~-~~-~~~~~~~l~~~l~~~~vvaIG-------------Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~  141 (171)
                      +++|+||+.+. .+ .+..+++|.+++.+++++|||             ||+   ...+.|+++|++|+++|++     +
T Consensus        92 ~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~---~~~~~q~~~~~~~~~lA~~~~~pv~  168 (314)
T 2vc7_A           92 AGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEP---GITKDVEKVIRAAAIANKETKVPII  168 (314)
T ss_dssp             ECEEBCCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTT---CSCHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             EEeecCCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCC---CCCHHHHHHHHHHHHHHHHHCCEEE
Confidence            99999998752 22 112355666655444444443             443   2357899999999999998     7


Q ss_pred             HHhh---hhhHhHhhh----cC---c-eEEEecC-CCccc
Q psy4673         142 EFCQ---KNFSRKEHL----NR---H-LWVHKDS-SMMKE  169 (171)
Q Consensus       142 iH~r---~a~~~~~~~----~~---p-~iiH~fs-g~~~e  169 (171)
                      ||++   ++..+++++    +.   + ++.|+|+ ++.++
T Consensus       169 iH~~~~~~~~~~~~~~l~~~~~~~~~~~i~H~~~~~~~~~  208 (314)
T 2vc7_A          169 THSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDY  208 (314)
T ss_dssp             EECCTTTTHHHHHHHHHHHTTCCGGGEEETTGGGCCCHHH
T ss_pred             EeCCCcccChHHHHHHHHHcCCCcccEEEECCCCCCCHHH
Confidence            9995   565565432    32   3 6779997 44543

>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}

Probab=99.71  E-value=3.4e-17  Score=130.75  Aligned_cols=111  Identities=16%  Similarity=0.208  Sum_probs=88.6

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh----------------------------------hHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK----------------------------------SSKE   68 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~----------------------------------~~~~   68 (171)
                      +|+||+|||++.     +.++++++++++||.++|++++++.                                  .++.
T Consensus         2 ~m~iD~H~Hl~~-----~~~~~l~~m~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~n~~   76 (272)
T 3cjp_A            2 SLIIDGHTHVIL-----PVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSMIDVRRNSIKE   76 (272)
T ss_dssp             -CCEEEEEECCS-----SHHHHHHHHHHHTCCEEEEECCSCCGGGCCSHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHH
T ss_pred             ceEEEehhhcCC-----CHHHHHHHHHHcCCCEEEEeCCCCCccccchhhhhhhhhhcccccccCCchhhHHHHHhhHHH
Confidence            368999999975     3589999999999999998887654                                  6788


Q ss_pred             HHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhH------HH
Q psy4673          69 ALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITAL------CE  142 (171)
Q Consensus        69 ~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~------~i  142 (171)
                      +.++++++|+ .+.++|+||.....  ++.+++|++++.+++++|||.+..+.   . |.+.|..|+++|.+      +|
T Consensus        77 ~~~~~~~~p~-~~~~~g~~p~~~~~--~~~~~el~~~~~~~g~~gi~~~g~~~---~-~~~~~~~~~~~a~~~~~lpv~i  149 (272)
T 3cjp_A           77 LTNVIQAYPS-RYVGFGNVPVGLSE--NDTNSYIEENIVNNKLVGIGELTPAS---G-QIKSLKPIFKYSMDSGSLPIWI  149 (272)
T ss_dssp             HHHHHHHSTT-TEEEEECCCTTCCH--HHHHHHHHHHTTTTTCSEEEEECCCT---T-CGGGGHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHhCCC-eEEEEEEeCCCCCc--HHHHHHHHHHHHhcCceEEEecCCCC---C-ccHHHHHHHHHHHhccCCcEEE
Confidence            8899999998 57899999987531  45778899988888999999433322   2 78899999999984      46


Q ss_pred             Hhh
Q psy4673         143 FCQ  145 (171)
Q Consensus       143 H~r  145 (171)
                      |++
T Consensus       150 H~~  152 (272)
T 3cjp_A          150 HAF  152 (272)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            665

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=99.64  E-value=2.2e-16  Score=128.56  Aligned_cols=125  Identities=9%  Similarity=0.109  Sum_probs=97.9

Q ss_pred             ceEeeccCCCCCCCCC-------------------CH-HHHHHHHHhcCCCEEEEeCCCh----------------hhHH
Q psy4673          24 VLIDVGANLTNRKFGR-------------------DL-ESVVQRAKDSGVQKIIAIGSSL----------------KSSK   67 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~-------------------d~-~~vl~~a~~~gv~~~i~v~~~~----------------~~~~   67 (171)
                      ++||+|||+....+..                   ++ +++++.+++.||.++|++++.+                ..++
T Consensus         3 ~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~p~~~~~~d~~~~~~~~~~~n~   82 (327)
T 2dvt_A            3 GKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRAND   82 (327)
T ss_dssp             SEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHH
T ss_pred             CeEEEecccCCHHHHHHHhccCCcccccccchhcCChhHHHHHHhhhcCCcEEEEeCCCCcccccCChHHHHHHHHHHHH
Confidence            5899999998754322                   55 7899999999999988877654                5567


Q ss_pred             HHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCCCC--CcHHHHHHHHHHHHHHhhHHH
Q psy4673          68 EALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQ--WITEIKQTLFTTFVDITALCE  142 (171)
Q Consensus        68 ~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~--~~~~~Q~~~F~~ql~lA~~~i  142 (171)
                      .+.+++++||+++++.+|+||+..    +..+++|++++.+++++||.   +++.+.  .....|...|..++++|.   
T Consensus        83 ~~~~~~~~~p~r~~~~~~v~p~~~----~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~---  155 (327)
T 2dvt_A           83 VLAEECAKRPDRFLAFAALPLQDP----DAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVE---  155 (327)
T ss_dssp             HHHHHHHHCTTTEEEEECCCTTSH----HHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHH---
T ss_pred             HHHHHHhhCCCceEEEeecCcCCH----HHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHH---
Confidence            788889999987778899999754    34688999988877888766   665321  123457788999999999   


Q ss_pred             HhhhhhHhHhhhcCceEEEecCC
Q psy4673         143 FCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       143 H~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                                ++++|++||+..+
T Consensus       156 ----------~~~lpv~iH~~~~  168 (327)
T 2dvt_A          156 ----------KLDVPFYLHPRNP  168 (327)
T ss_dssp             ----------HHTCCEEEECCCC
T ss_pred             ----------HcCCeEEECCCCC
Confidence                      9999999998754

>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3

Probab=99.61  E-value=2.4e-15  Score=120.33  Aligned_cols=143  Identities=10%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             ceEeeccCCCCCC--C--C--------CCHHHHHHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcEEEEeee---
Q psy4673          24 VLIDVGANLTNRK--F--G--------RDLESVVQRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMVYSTAGI---   86 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~--~--------~d~~~vl~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v~~~~Gi---   86 (171)
                      .+||+|||+....  +  .        ....+.++++...||..++.++++ . .+++.+++++++++..+++++|+   
T Consensus         6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~   85 (291)
T 1bf6_A            6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   85 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred             ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence            7999999997321  1  0        123456788889999999998875 4 35888899998886458999999   


Q ss_pred             --CCCCCCCCCHHHH-HHHHHHhcc------CCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHh---h
Q psy4673          87 --HPHEAKSWDEDYI-DQLRDLVSN------TGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFC---Q  145 (171)
Q Consensus        87 --HP~~~~~~~~~~~-~~l~~~l~~------~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~---r  145 (171)
                        ||+++.....+.+ +.+.+.+..      .++++||    ||+.   ....|+++|++|+++|++     ++||   |
T Consensus        86 ~~hP~~~~~~~~~~l~~~~~~~l~~gi~~~~~~~~~iGe~gld~~~---~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~  162 (291)
T 1bf6_A           86 AFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGK---ITPLEEKVFIAAALAHNQTGRPISTHTSFST  162 (291)
T ss_dssp             GGCCTHHHHSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEEECBTTB---CCHHHHHHHHHHHHHHHHHCCCEEEECGGGC
T ss_pred             ccCcHhhhcCCHHHHHHHHHHHHHhccCCcCcceeeEEEEecCCCC---CCHHHHHHHHHHHHHHHHHCCeEEEeCCCCC
Confidence              9987654444444 344444432      5677776    7642   236799999999999998     7999   4


Q ss_pred             hhhH--hHh-hhcC---c-eEEEe-cCCCccc
Q psy4673         146 KNFS--RKE-HLNR---H-LWVHK-DSSMMKE  169 (171)
Q Consensus       146 ~a~~--~~~-~~~~---p-~iiH~-fsg~~~e  169 (171)
                      .+.+  +++ +.+.   + +|.|+ |+++.++
T Consensus       163 ~~~~~~~~l~~~~~~~~~~~i~H~~~~~~~~~  194 (291)
T 1bf6_A          163 MGLEQLALLQAHGVDLSRVTVGHCDLKDNLDN  194 (291)
T ss_dssp             SHHHHHHHHHHTTCCGGGEEECCCCSSCCHHH
T ss_pred             ChHHHHHHHHHcCCCchhEEEECCCCCCCHHH
Confidence            4442  222 3333   2 67899 4566544

>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A

Probab=99.56  E-value=2e-14  Score=117.01  Aligned_cols=113  Identities=11%  Similarity=0.051  Sum_probs=86.5

Q ss_pred             ccceEeeccCCCCCC-----C----------CCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhcCCcEEEEe
Q psy4673          22 NYVLIDVGANLTNRK-----F----------GRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIYPGMVYSTA   84 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~-----~----------~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~~~~v~~~~   84 (171)
                      +||+||+|+|+....     +          .-.+++++++++..||.++|+++++.  .+++.++++++++|. +++++
T Consensus         2 ~~m~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~~~~~~~n~~l~~la~~~p~-~~g~v   80 (303)
T 4do7_A            2 GALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEAR-IAAVV   80 (303)
T ss_dssp             -CCCEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECCSSSHHHHHHHHHHHTTCTT-EEEEE
T ss_pred             CCcEEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEccCCcHHHHHHHHHHHHhCCC-eEEEE
Confidence            367899999997531     1          13689999999999999999999864  678889999999995 88888


Q ss_pred             eeCCCCCCCCCHHHHHHHHHHhccCCeEEEe-cCCCCCCcH-HHHHHHHHHHHHHhhH
Q psy4673          85 GIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN-RYNSSQWIT-EIKQTLFTTFVDITAL  140 (171)
Q Consensus        85 GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~-~~Q~~~F~~ql~lA~~  140 (171)
                      |++|....+    ..++|+++. +++++||| -+.+...+. ..|...|..++++|.+
T Consensus        81 g~v~~~~~~----~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (303)
T 4do7_A           81 GWEDLRAPQ----LAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQA  133 (303)
T ss_dssp             ECCCTTCTT----HHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHH
T ss_pred             EEeCCCCch----HHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHH
Confidence            955544322    567788877 88999999 333333334 5789999999999994

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15

Probab=99.55  E-value=7.9e-15  Score=118.31  Aligned_cols=123  Identities=11%  Similarity=0.106  Sum_probs=94.0

Q ss_pred             cceEeeccCCCCCCCC------------------CCHHHHHHHHHhcCCCEEEEeCCCh---------------hhHHHH
Q psy4673          23 YVLIDVGANLTNRKFG------------------RDLESVVQRAKDSGVQKIIAIGSSL---------------KSSKEA   69 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~------------------~d~~~vl~~a~~~gv~~~i~v~~~~---------------~~~~~~   69 (171)
                      |++||+|||+....+.                  .+++++++++.+.||.++|++++.+               ..++.+
T Consensus         1 m~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~n~~~   80 (307)
T 2f6k_A            1 MSKIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDG   80 (307)
T ss_dssp             -CEEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence            5799999999875431                  5789999999999999988876531               456778


Q ss_pred             HHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEE--e-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhh
Q psy4673          70 LRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTM--N-RYNSSQWITEIKQTLFTTFVDITALCEFCQK  146 (171)
Q Consensus        70 ~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaI--G-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~  146 (171)
                      .++++++|++ +.++|+||...   .+..+++|++++.+.+++||  | |+...    ..+...|..++++|.       
T Consensus        81 ~~~~~~~p~r-~~~~~~~p~~~---~~~~~~el~~~~~~~g~~gi~~~~~~~~~----~~~~~~~~~~~~~a~-------  145 (307)
T 2f6k_A           81 KSLAQQYPDQ-LGYLASLPIPY---ELDAVKTVQQALDQDGALGVTVPTNSRGL----YFGSPVLERVYQELD-------  145 (307)
T ss_dssp             HHHHHHCTTT-EEEEECCCTTC---HHHHHHHHHHHHHTSCCSEEEEESEETTE----ETTCGGGHHHHHHHH-------
T ss_pred             HHHHHhCccc-eeEEEeCCCCC---HHHHHHHHHHHHhccCCcEEEEeccCCCC----CCCcHhHHHHHHHHH-------
Confidence            8889999985 67899999532   24678899998877777764  4 65321    112367999999999       


Q ss_pred             hhHhHhhhcCceEEEecCCC
Q psy4673         147 NFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       147 a~~~~~~~~~p~iiH~fsg~  166 (171)
                            ++++|++||+..+.
T Consensus       146 ------~~~lpv~iH~~~~~  159 (307)
T 2f6k_A          146 ------ARQAIVALHPNEPA  159 (307)
T ss_dssp             ------TTTCEEEEECCCCS
T ss_pred             ------HcCCeEEECCCCCc
Confidence                  99999999998754

>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*

Probab=99.54  E-value=1.9e-14  Score=119.52  Aligned_cols=156  Identities=9%  Similarity=0.027  Sum_probs=105.9

Q ss_pred             ccccCCC-CCCccceEeeccCCCC--CCCC-----------CC---HHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHH
Q psy4673          12 ELTKLTN-CFDNYVLIDVGANLTN--RKFG-----------RD---LESVVQRAKDSGVQKIIAIGSS--LKSSKEALRL   72 (171)
Q Consensus        12 ~~~~~~~-~~~~~~~iDtH~HL~~--~~~~-----------~d---~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l   72 (171)
                      ..|++-| +++.+.++++|=||-.  ..+.           ++   ...-+++|+++||..+|.++++  ..++..++++
T Consensus        19 v~Tv~G~i~~~~lG~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~l   98 (339)
T 3gtx_A           19 AQTVTGAVAAAQLGATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREV   98 (339)
T ss_dssp             EEETTEEECGGGCCEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHH
T ss_pred             EEEecCCCCHHHCCCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHH
Confidence            3444432 5566889999999832  2111           11   2234578999999999999875  5889999999


Q ss_pred             HHhcCCcEEEEeeeCCCCC-CCC-CH------HHHHHHHHHhcc------------CCeEEEe-cCCCCCCcHHHHHHHH
Q psy4673          73 ARIYPGMVYSTAGIHPHEA-KSW-DE------DYIDQLRDLVSN------------TGNSTMN-RYNSSQWITEIKQTLF  131 (171)
Q Consensus        73 ~~~~~~~v~~~~GiHP~~~-~~~-~~------~~~~~l~~~l~~------------~~vvaIG-Dy~~~~~~~~~Q~~~F  131 (171)
                      +++++..+|++.|+||+.. ..+ ..      ..+++|.+++..            ..++.|| ||+   ...+.|+++|
T Consensus        99 a~~~g~~i~~~tG~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~---~~~~~q~~~f  175 (339)
T 3gtx_A           99 SEATGLQILCATGFYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRD---AITPYEQLFF  175 (339)
T ss_dssp             HHHHCCEEECEECCCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSS---CCCHHHHHHH
T ss_pred             HHHcCCcEEEEcCCCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCC---CCCHHHHHHH
Confidence            9998744899999999754 111 00      134566555432            1334688 886   3458899999


Q ss_pred             HHHHHHhhH-----HHHh---hhhhHh--Hh-hhcCc----eEEEec-CCCcccc
Q psy4673         132 TTFVDITAL-----CEFC---QKNFSR--KE-HLNRH----LWVHKD-SSMMKEL  170 (171)
Q Consensus       132 ~~ql~lA~~-----~iH~---r~a~~~--~~-~~~~p----~iiH~f-sg~~~el  170 (171)
                      ++|+++|++     +|||   |+|++-  ++ +.+.|    ++.|+| +++.+++
T Consensus       176 ~aq~~lA~~~glPViiH~~~gr~a~~~~~iL~~~~~~~~~~vi~H~~~~~~~e~a  230 (339)
T 3gtx_A          176 RAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYH  230 (339)
T ss_dssp             HHHHHHHHHHCCCEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHHH
T ss_pred             HHHHHHHHHHCCeEEEeCCCCcCHHHHHHHHHHcCCCcccEEEEccCCCCCHHHH
Confidence            999999999     8999   888752  22 23333    456999 6876543

>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15

Probab=99.53  E-value=2.9e-15  Score=120.17  Aligned_cols=136  Identities=10%  Similarity=0.057  Sum_probs=97.5

Q ss_pred             CCccceEeeccCCCCCCC------------CCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEee
Q psy4673          20 FDNYVLIDVGANLTNRKF------------GRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAG   85 (171)
Q Consensus        20 ~~~~~~iDtH~HL~~~~~------------~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~G   85 (171)
                      ..+|++||+|||+....+            ..+++++++.+...||.++|+++.+  ..+++.++++++++|+++++++|
T Consensus         9 ~~~~~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~~~p~r~~~~~~   88 (288)
T 2ffi_A            9 ALHLTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVM   88 (288)
T ss_dssp             -CCCCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBC
T ss_pred             cCCCCceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHHHCCCCEEEEEE
Confidence            345789999999987433            3588999999999999998887753  45677888999999987788899


Q ss_pred             eCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh-HhHh----
Q psy4673          86 IHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNF-SRKE----  152 (171)
Q Consensus        86 iHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~-~~~~----  152 (171)
                      +||..+       .++|+++.+ .+++||.   ++...   ...|...|..++++|.+     +||++.+. .++.    
T Consensus        89 v~p~~~-------~~el~~~~~-~g~~Gi~~~~~~~~~---~~~~~~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~  157 (288)
T 2ffi_A           89 LERDVE-------QATLAEMAR-LGVRGVRLNLMGQDM---PDLTGAQWRPLLERIGEQGWHVELHRQVADIPVLVRALQ  157 (288)
T ss_dssp             CCSSCC-------HHHHHHHHT-TTCCEEECCCSSSCC---CCTTSTTTHHHHHHHHHHTCEEEECSCTTTHHHHHHHHT
T ss_pred             eCCCCC-------HHHHHHHHH-CCCeEEEEecccCCC---CCcccHHHHHHHHHHHHCCCeEEEeechhhHHHHHHHHH
Confidence            999754       245666654 4788875   54311   23466789999999998     67888762 3332    


Q ss_pred             hhcCceE-EEecCCC
Q psy4673         153 HLNRHLW-VHKDSSM  166 (171)
Q Consensus       153 ~~~~p~i-iH~fsg~  166 (171)
                      ++.+++| .|++.+.
T Consensus       158 ~~pl~~vi~H~g~~~  172 (288)
T 2ffi_A          158 PYGLDIVIDHFGRPD  172 (288)
T ss_dssp             TTTCCEEESGGGSCC
T ss_pred             HCCCCEEEECCCCCC
Confidence            2334554 4887765

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=99.48  E-value=6.3e-14  Score=113.55  Aligned_cols=118  Identities=13%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             ccceEeeccCCCCCCCC----------------------------CCHHHHHHHHHhcCCCEEEEeCCCh-----hhHHH
Q psy4673          22 NYVLIDVGANLTNRKFG----------------------------RDLESVVQRAKDSGVQKIIAIGSSL-----KSSKE   68 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~----------------------------~d~~~vl~~a~~~gv~~~i~v~~~~-----~~~~~   68 (171)
                      .||+||+|+|.-...|.                            .+++++++++.+.||.+.|+++++.     .+++.
T Consensus         2 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~md~~GV~~~V~~~~~~~~~~~~~N~~   81 (291)
T 3irs_A            2 SLKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPSAEEKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNAD   81 (291)
T ss_dssp             -CCCEESSBCCSSGGGGGSHHHHCHHHHHHHHHHHTCCCCHHHHHTCHHHHHHHHHHTTCCEEEEECCEETTTEECCHHH
T ss_pred             CcceEEEecCCCchHhhccccccccccccchhhccCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEcCCCccccccccHHH
Confidence            48899999997543221                            3789999999999999999988874     67888


Q ss_pred             HHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----
Q psy4673          69 ALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----  140 (171)
Q Consensus        69 ~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----  140 (171)
                      +.+++++||+++++++|+||+..    ++.+++|++ +.+.+++|||   ++...  +...|...|..++++|.+     
T Consensus        82 ~~~~~~~~p~r~~~~~~v~p~~~----~~a~~eL~~-~~~~g~~Gi~~~~~~~~~--~~~~~d~~~~~~~~~a~e~glpv  154 (291)
T 3irs_A           82 VAAVAKAYPDKFHPVGSIEAATR----KEAMAQMQE-ILDLGIRIVNLEPGVWAT--PMHVDDRRLYPLYAFCEDNGIPV  154 (291)
T ss_dssp             HHHHHHHSTTTEEEEEECCCSSH----HHHHHHHHH-HHHTTCCCEEECGGGSSS--CCCTTCGGGHHHHHHHHHTTCCE
T ss_pred             HHHHHHHCCCcEEEEEecCccCH----HHHHHHHHH-HHhCCCeEEEEeCCCCCC--CCCCCCHHHHHHHHHHHHcCCeE
Confidence            99999999988899999999854    356788888 7788999999   44311  112355679999999995     


Q ss_pred             HHHhhh
Q psy4673         141 CEFCQK  146 (171)
Q Consensus       141 ~iH~r~  146 (171)
                      +||++.
T Consensus       155 ~iH~~~  160 (291)
T 3irs_A          155 IMMTGG  160 (291)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            455554

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}

Probab=99.43  E-value=2.1e-13  Score=114.21  Aligned_cols=158  Identities=11%  Similarity=-0.037  Sum_probs=108.3

Q ss_pred             CCCcccccCCC-CCCccceEeeccCCCCC--C-----C--------------------------------CC---CHHHH
Q psy4673           8 NNNNELTKLTN-CFDNYVLIDVGANLTNR--K-----F--------------------------------GR---DLESV   44 (171)
Q Consensus         8 ~~~~~~~~~~~-~~~~~~~iDtH~HL~~~--~-----~--------------------------------~~---d~~~v   44 (171)
                      ++....|++-| +++.+.++++|=||-..  .     .                                .+   ..-+.
T Consensus        12 ~~~~v~TV~G~i~~~~lG~tl~HEHl~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   91 (364)
T 3k2g_A           12 RSGRIMTVDGPIPSSALGHTLMHEHLQNDCRCWWNPPQEPERQYLAEAPISIEILSELRQDPFVNKHNIALDDLDLAIAE   91 (364)
T ss_dssp             TTTEEEETTEEEEGGGCCSEESSCCSSEECGGGCCCCCSGGGTHHHHSCCCGGGHHHHHTCGGGCTTTSEECCHHHHHHH
T ss_pred             ecceeEEecCcCCHHHCCCceeccCeeecccccccCCCccchhhcccCCccHHHHHHHhcCCcCCccccccccHHHHHHH
Confidence            34566777665 56778899999999631  0     0                                01   13466


Q ss_pred             HHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEeeeC-----CCCCCCCCHHHHHH-HH-HHh---cc--CC
Q psy4673          45 VQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAGIH-----PHEAKSWDEDYIDQ-LR-DLV---SN--TG  110 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~GiH-----P~~~~~~~~~~~~~-l~-~~l---~~--~~  110 (171)
                      +++++++||..+|.++++  ..++..+.+++++++-.+|++.|+|     |.++...+.+.+.. +. ++.   ..  .+
T Consensus        92 l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~Gi~~~~vk  171 (364)
T 3k2g_A           92 VKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALEGTDGTDAR  171 (364)
T ss_dssp             HHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHTCBTTBSCC
T ss_pred             HHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHhccccCCcc
Confidence            788999999999999875  5799999999999983489999999     87766544333322 11 211   11  23


Q ss_pred             e--E-EEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHh--h-hhhHhHhh----hcCc---e-EEEec-CC-Ccc
Q psy4673         111 N--S-TMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFC--Q-KNFSRKEH----LNRH---L-WVHKD-SS-MMK  168 (171)
Q Consensus       111 v--v-aIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~--r-~a~~~~~~----~~~p---~-iiH~f-sg-~~~  168 (171)
                      +  + .|| ||.    ..+.|+++|++|+++|++     +||+  | ++..++++    .+.|   + +.|+| ++ +.+
T Consensus       172 ag~IGEiGld~~----~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e~l~iL~e~g~~~~~vvi~H~~~s~~~~e  247 (364)
T 3k2g_A          172 IGLIGEIGVSSD----FTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPV  247 (364)
T ss_dssp             CSSEEEEECCTT----CCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHHHHHHHHHHTTCCGGGEEECCCGGGTTCHH
T ss_pred             eeEEEEEEcCCC----CCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHHHHHHHHHHcCCCCCceEEECCCCCCCCHH
Confidence            3  3 255 872    347899999999999999     7999  7 77776553    3433   3 44999 57 655


Q ss_pred             c
Q psy4673         169 E  169 (171)
Q Consensus       169 e  169 (171)
                      +
T Consensus       248 ~  248 (364)
T 3k2g_A          248 Y  248 (364)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=99.22  E-value=7.3e-11  Score=96.71  Aligned_cols=100  Identities=13%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhcCCCEEEEeCC--------Ch--------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          41 LESVVQRAKDSGVQKIIAIGS--------SL--------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~--------~~--------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      .+++++.+++.||...|++++        ++        ..++.+.++++++|+++.+..++||...    +..+++|++
T Consensus        60 ~~~~l~~m~~~GV~~~V~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~----~~a~~el~~  135 (334)
T 2hbv_A           60 PAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDL----DLACKEASR  135 (334)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSH----HHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECCCchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCccCH----HHHHHHHHH
Confidence            689999999999998777754        33        3446677888999987666688999743    356788888


Q ss_pred             HhccCCeEE--Ee----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         105 LVSNTGNST--MN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       105 ~l~~~~vva--IG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++ +.+++|  ||    +++.       +...|..++++|.             ++++|++||+..+
T Consensus       136 ~~-~~g~~Gv~l~~~~~~~~l-------~d~~~~p~~~~~~-------------e~~lpv~iH~~~~  181 (334)
T 2hbv_A          136 AV-AAGHLGIQIGNHLGDKDL-------DDATLEAFLTHCA-------------NEDIPILVHPWDM  181 (334)
T ss_dssp             HH-HHTCCCEEEESCBTTBCT-------TSHHHHHHHHHHH-------------HTTCCEEEECCSC
T ss_pred             HH-HcCCeEEEECCCCCCCCC-------CcHHHHHHHHHHH-------------HCCCEEEECCCCC
Confidence            88 556665  55    3222       2267999999999             9999999999864

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=94.60  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCC--------h--------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSS--------L--------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~--------~--------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      ++.+++.+++.||...|++++.        +        ...+.+.++++++|+++.+..++||...    +..+++|++
T Consensus        56 ~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~----~~a~~el~~  131 (336)
T 2wm1_A           56 PEVRIREMDQKGVTVQALSTVPVMFSYWAKPEDTLNLCQLLNNDLASTVVSYPRRFVGLGTLPMQAP----ELAVKEMER  131 (336)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGGCTTSCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCTTSH----HHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECCCchhhcccCCHHHHHHHHHHHHHHHHHHHHhccCceeEEEeCCCcCH----HHHHHHHHH
Confidence            6889999999999988887653        2        3356677889999987666667999743    356889999


Q ss_pred             HhccCCeEEE--e-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         105 LVSNTGNSTM--N-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       105 ~l~~~~vvaI--G-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++.+.+++||  | .+..    ...|...|..++++|.             ++++|++||+..+
T Consensus       132 ~~~~~g~~Gv~l~~~~~~----~~l~d~~~~~~~~~~~-------------e~~lpv~iH~~~~  178 (336)
T 2wm1_A          132 CVKELGFPGVQIGTHVNE----WDLNAQELFPVYAAAE-------------RLKCSLFVHPWDM  178 (336)
T ss_dssp             HHHTSCCSEEEEESEETT----EETTCGGGHHHHHHHH-------------HHTCEEEEECCSC
T ss_pred             HHHccCCeEEEECCcCCC----CCCCCccHHHHHHHHH-------------HcCCEEEECCCCC
Confidence            8877888888  4 3211    1124457999999999             9999999999864

>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}

Probab=99.17  E-value=6e-11  Score=99.36  Aligned_cols=120  Identities=13%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             HHHHHhcCCCEEEEeC-CC--hhhHHHHHHHHHhcCCcEEEEeeeC-----CCCCCCCCHHHHH-HHH-HH---hcc--C
Q psy4673          45 VQRAKDSGVQKIIAIG-SS--LKSSKEALRLARIYPGMVYSTAGIH-----PHEAKSWDEDYID-QLR-DL---VSN--T  109 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~-~~--~~~~~~~~~l~~~~~~~v~~~~GiH-----P~~~~~~~~~~~~-~l~-~~---l~~--~  109 (171)
                      +++++++||..+|.++ ++  -.++..+.+++++++-.+|++.|+|     |.+... +.+.+. .+. ++   +..  .
T Consensus        81 l~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~-~~~~L~~~~~~ei~~gi~~t~v  159 (365)
T 3rhg_A           81 LNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLAD-DIDAMAKMIDDELNIGIDGTDI  159 (365)
T ss_dssp             HHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGS-CHHHHHHHHHHHHHTCSTTSSC
T ss_pred             HHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcC-CHHHHHHHHHHHHHhccccCCc
Confidence            3778999999999988 42  3689999999999983489999999     987655 333332 111 11   111  2


Q ss_pred             CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH------HHHh-h--hhhHhHhh----h-cCc----eEEEec-C-C
Q psy4673         110 GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL------CEFC-Q--KNFSRKEH----L-NRH----LWVHKD-S-S  165 (171)
Q Consensus       110 ~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~------~iH~-r--~a~~~~~~----~-~~p----~iiH~f-s-g  165 (171)
                      ++++||    |+.    ..+.|+++|++|+++|.+      +||+ |  ++..++++    . +.|    ++.|+| + +
T Consensus       160 kag~IGEiGld~~----~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~~~~~~~vvi~H~~rs~~  235 (365)
T 3rhg_A          160 RAGMIGEIGVSPF----FTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCDPAKISLAHSDPSGK  235 (365)
T ss_dssp             CCCEEEEEECCTT----CCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHHHHHHHTTTTCCCGGGEEESCCGGGTT
T ss_pred             eeEEEEEEEcCCC----CCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHHHHHHHHhccCCCCCceEEecCCCCCC
Confidence            343355    742    347899999999999998      6998 8  77776542    3 333    345999 5 6


Q ss_pred             Cccc
Q psy4673         166 MMKE  169 (171)
Q Consensus       166 ~~~e  169 (171)
                      +.++
T Consensus       236 ~~e~  239 (365)
T 3rhg_A          236 DIDY  239 (365)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6654

>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15

Probab=99.16  E-value=5.4e-11  Score=98.19  Aligned_cols=108  Identities=12%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             HHHHHHHhcCCCEEEEeCCCh-----------------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH
Q psy4673          43 SVVQRAKDSGVQKIIAIGSSL-----------------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL  105 (171)
Q Consensus        43 ~vl~~a~~~gv~~~i~v~~~~-----------------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~  105 (171)
                      ++++.+.+.||...|++++.+                 ..++.+.+++++||++ +.++|.||.......+..+++|+++
T Consensus        53 ~~l~~md~~GV~~~vl~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r-f~~~~~~p~~~~~~~~~a~~eL~r~  131 (350)
T 2gwg_A           53 NQLKKMQERGSDLTVFSPRASFMAHHIGDFNVSSTWAAICNELCYRVSQLFPDN-FIGAAMLPQSPGVDPKTCIPELEKC  131 (350)
T ss_dssp             THHHHHHHHTCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHSTTT-EEEEEECCCCTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEcCCchhhccccCCHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            678899999999988887754                 4566778889999985 5679999975432224578899998


Q ss_pred             hccCCeEEE--e-c---CCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673         106 VSNTGNSTM--N-R---YNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       106 l~~~~vvaI--G-D---y~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      +.+.+++||  | |   ++++.  ...|...|..++++|.             ++++|++||+..+.
T Consensus       132 ~~~~g~~Gv~l~~~~~~~~~~~--~~l~d~~~~p~~~~a~-------------e~~lpv~iH~~~~~  183 (350)
T 2gwg_A          132 VKEYGFVAINLNPDPSGGHWTS--PPLTDRIWYPIYEKMV-------------ELEIPAMIHVSTSC  183 (350)
T ss_dssp             HHTSCCCEEEECSCTTSSCCCS--CCTTSGGGHHHHHHHH-------------HHTCCEEECCCC--
T ss_pred             HhccCCeEEEECCCCCCccCCC--CCCCCHHHHHHHHHHH-------------HcCCeEEECCCCCC
Confidence            877777775  4 5   44432  2357788999999999             99999999998653

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A

Probab=99.04  E-value=2.6e-10  Score=101.13  Aligned_cols=123  Identities=13%  Similarity=0.025  Sum_probs=86.0

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE------eCCChhhHHHHHHHHHhcCCcEEEEe-eeCCC-CCC--C
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA------IGSSLKSSKEALRLARIYPGMVYSTA-GIHPH-EAK--S   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~------v~~~~~~~~~~~~l~~~~~~~v~~~~-GiHP~-~~~--~   93 (171)
                      .|||+|||+....  .+++++.+++...|+..++.      ...+.+.++..++.+++.|..+|++. |+||. ...  .
T Consensus        90 G~ID~H~Hl~~~~--~~~~~~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~  167 (608)
T 3nqb_A           90 GLIDTHMHIESSM--ITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERG  167 (608)
T ss_dssp             CEEEEEECGGGGT--SCHHHHHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCC
T ss_pred             CeEecccCccccc--CCHHHHHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccC
Confidence            4899999997643  36788889999999988775      33456778888888888875677777 99996 211  1


Q ss_pred             CCHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhH
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFS  149 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~  149 (171)
                      ......+.+++++..++++++|.+. +......|.+.|.+++++|.+     .+||+.+..
T Consensus       168 g~~~~~~el~~l~~~~~v~glgE~~-~~~~v~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~  227 (608)
T 3nqb_A          168 GADFDAAILADLLSWPEIGGIAEIM-NMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKN  227 (608)
T ss_dssp             SCCCCHHHHHHHHTSTTEEEEEEEC-CHHHHHTTCHHHHHHHHHHHHHTCEEEECCTTCCH
T ss_pred             cccCCHHHHHHHHhccCcceeeEee-ccCCcCCCcHHHHHHHHHHHHcCCEEEEcCCCCCH
Confidence            1122456777888888999999432 111223466789999999995     455555544

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans}

Probab=98.93  E-value=3.1e-09  Score=89.91  Aligned_cols=120  Identities=18%  Similarity=0.129  Sum_probs=85.0

Q ss_pred             ceEeeccCCCCCCCC--CCHHHHHHHHHhcCCCEEEEeC-------CChhhHHHHHHHHHhcC-CcEEEEeeeCCCCCCC
Q psy4673          24 VLIDVGANLTNRKFG--RDLESVVQRAKDSGVQKIIAIG-------SSLKSSKEALRLARIYP-GMVYSTAGIHPHEAKS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~v~-------~~~~~~~~~~~l~~~~~-~~v~~~~GiHP~~~~~   93 (171)
                      .|||+|||+....+.  +++....+.+...||..++..+       .+++.+....+.++... -.++...|++|..   
T Consensus        60 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  136 (448)
T 3hm7_A           60 GMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---  136 (448)
T ss_dssp             CEEEEEECCCTTTSGGGCCSHHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---
T ss_pred             CEEEeeeccCCCCCCcHhHHHHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---
Confidence            489999999875442  5778888999999999888876       34566666666655432 1367778888764   


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                           ++++.+++. ..+++++   ||++.......|.+.|.+++++|+             ++++|+++|+.+.
T Consensus       137 -----~~~l~~l~~-~g~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~a~-------------~~g~~v~vH~~~~  192 (448)
T 3hm7_A          137 -----IDHLQDLHD-GGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIA-------------ALGSILAVHAESN  192 (448)
T ss_dssp             -----GGGHHHHHH-TTCSEEEEESSSCSSSSSCCCCHHHHHHHHHHHH-------------HHTCCEEEECCCH
T ss_pred             -----HHHHHHHHH-cCCCEEEEeeccccCCccCcCCHHHHHHHHHHHH-------------hcCCEEEEEeCCH
Confidence                 223344433 4566665   887643222338889999999999             9999999998764

>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0

Probab=98.92  E-value=3.9e-09  Score=87.22  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             CCCccceEeeccCCCCCC------C-----CCCHHH---HHHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcEEE
Q psy4673          19 CFDNYVLIDVGANLTNRK------F-----GRDLES---VVQRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMVYS   82 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~~~------~-----~~d~~~---vl~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v~~   82 (171)
                      +++.+.++.+|=||-...      .     .++.+.   =++++++.|+..+|.+++. . .+...+.+++++..-.|++
T Consensus        12 ~~~~lG~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~   91 (330)
T 3pnz_A           12 APEQLGFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVG   91 (330)
T ss_dssp             CGGGTCSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEE
T ss_pred             CHHHCCCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEE
Confidence            456678999999996421      0     123344   3456788999998887642 1 2455566677776545899


Q ss_pred             EeeeCCCCC-----------------------CCCCHHHH-----HHHHHHhccCC----eEEEe-cCCCCCCcHHHHHH
Q psy4673          83 TAGIHPHEA-----------------------KSWDEDYI-----DQLRDLVSNTG----NSTMN-RYNSSQWITEIKQT  129 (171)
Q Consensus        83 ~~GiHP~~~-----------------------~~~~~~~~-----~~l~~~l~~~~----vvaIG-Dy~~~~~~~~~Q~~  129 (171)
                      +.|+|+..-                       ...+.+.+     .++.+-+..+.    ++.|| ||+   ...+.|++
T Consensus        92 ~TG~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei~~Gi~~t~vkaGvIEiGld~~---~~~~~q~~  168 (330)
T 3pnz_A           92 TAGFNKSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYN---MITPLEEK  168 (330)
T ss_dssp             EEECCCGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEECBTT---BCCHHHHH
T ss_pred             eCCCCccccccccccccccccccccccCchhhccCCHHHHHHHHHHHHHhhCCCcCcCcCeEEEEcCCC---CCCHHHHH
Confidence            999997310                       00111222     22222222333    45678 985   35688999


Q ss_pred             HHHHHHHHhhH-----HHHhhh---hhHh--Hh-hhcCc---eEE-Eec-CCCccc
Q psy4673         130 LFTTFVDITAL-----CEFCQK---NFSR--KE-HLNRH---LWV-HKD-SSMMKE  169 (171)
Q Consensus       130 ~F~~ql~lA~~-----~iH~r~---a~~~--~~-~~~~p---~ii-H~f-sg~~~e  169 (171)
                      +|++|+++|++     +||||+   +.+.  ++ +.+.|   +++ |+| +++.++
T Consensus       169 ~f~aq~~~A~~~glPViiH~r~g~~a~~~l~iL~e~~~~~~~vvi~H~~~s~~~e~  224 (330)
T 3pnz_A          169 TIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYY  224 (330)
T ss_dssp             HHHHHHHHHHHHCCCEEEECGGGCCHHHHHHHHHHTTCCGGGEEETTGGGSCCHHH
T ss_pred             HHHHHHHHHHHHCCeEEEeCCCCcChHHHHHHHHHcCCCCCeEEEecCCCCCCHHH
Confidence            99999999999     899997   5443  22 33333   444 996 877654

>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*

Probab=98.67  E-value=3.5e-08  Score=82.55  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             CCcccccCCC-CCCccceEeeccCCCCCC---------C-CCCHHHHH---HHHHhcCCCEEEEeCCCh--hhHHHHHHH
Q psy4673           9 NNNELTKLTN-CFDNYVLIDVGANLTNRK---------F-GRDLESVV---QRAKDSGVQKIIAIGSSL--KSSKEALRL   72 (171)
Q Consensus         9 ~~~~~~~~~~-~~~~~~~iDtH~HL~~~~---------~-~~d~~~vl---~~a~~~gv~~~i~v~~~~--~~~~~~~~l   72 (171)
                      ..+..|++-| +++.+.++.+|=||-...         + ..|.+..+   .+++..|+..+|.+++.-  .+...+.++
T Consensus         5 ~~~v~TV~G~i~~~~lG~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~i   84 (363)
T 3ovg_A            5 NKFARTVLGDIPVEKLGITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEI   84 (363)
T ss_dssp             CCEEEETTEEEEGGGCCEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHH
T ss_pred             ccCeEeecCCCCHHHCCCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHH
Confidence            3556666654 566688999999995421         0 12344443   446789999888776532  356666777


Q ss_pred             HHhc---CCcEEEEeeeCCCCC----CC----CCHHHHH-HHH-HH---hcc--------------CCeEEEe-cCCCCC
Q psy4673          73 ARIY---PGMVYSTAGIHPHEA----KS----WDEDYID-QLR-DL---VSN--------------TGNSTMN-RYNSSQ  121 (171)
Q Consensus        73 ~~~~---~~~v~~~~GiHP~~~----~~----~~~~~~~-~l~-~~---l~~--------------~~vvaIG-Dy~~~~  121 (171)
                      +++-   .-.|+++.|+|....    +.    .+.+.+. .+. ++   +..              +.+++|| ||+   
T Consensus        85 s~~t~~~Gv~Iv~~TG~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~---  161 (363)
T 3ovg_A           85 ANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYG---  161 (363)
T ss_dssp             HHHHGGGTCEEEEEEECCCGGGSCTTTSHHHHSCHHHHHHHHHHHHHTCCBTTTTSSSCCCBCSCCCCEEEEEEEET---
T ss_pred             HHhcccCCcEEEEeCCCCcCcccccCcHhhhcCCHHHHHHHHHHHHHhcccccccccccccCCCccCCEEEEEeCCC---
Confidence            7764   324889999985321    11    1212222 111 11   111              2466777 765   


Q ss_pred             CcHHHHHHHHHHHHHHhhH-----HHHhhh---hhHhHh----hhcCc----eEEEecC-CCc
Q psy4673         122 WITEIKQTLFTTFVDITAL-----CEFCQK---NFSRKE----HLNRH----LWVHKDS-SMM  167 (171)
Q Consensus       122 ~~~~~Q~~~F~~ql~lA~~-----~iH~r~---a~~~~~----~~~~p----~iiH~fs-g~~  167 (171)
                      ...+.|+++|++|+++|++     +||+|+   |. +++    +.+.|    ++.|+++ ++.
T Consensus       162 ~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a~-d~l~iL~e~g~~~~~vvi~H~~~~~~~  223 (363)
T 3ovg_A          162 AIDRLELKALEVAARTSILTGCPILVHTQLGTMAL-EVAKHLIGFGANPDKIQISHLNKNPDK  223 (363)
T ss_dssp             BEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSHH-HHHHHHHHHTCCGGGEEEECGGGSCCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCHH-HHHHHHHhcCCCCCcEEEEcCCCCCCH
Confidence            4568899999999999999     799974   55 443    23333    3558885 544

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14

Probab=98.65  E-value=1.5e-08  Score=83.12  Aligned_cols=138  Identities=13%  Similarity=0.046  Sum_probs=80.4

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEE-----EEeeeCCC-CCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVY-----STAGIHPH-EAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~-----~~~GiHP~-~~~~~   94 (171)
                      .|||+|||+....  +.+   ...+.+...||..++.+++. +.+++...++.++++..++     ...|.||. ...+.
T Consensus        55 G~ID~H~H~~~~~~~~~~---~~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~~~  131 (379)
T 2ics_A           55 GWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADL  131 (379)
T ss_dssp             CEEEEEECCCTTSSSSCC---CHHHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTSSG
T ss_pred             CEEEeccccCccCccccC---chhhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccccCCCCHHHHHHH
Confidence            4999999998632  222   23356788999988877654 7778888888777763343     22488886 33222


Q ss_pred             CHHHHHHHHHHhcc--CCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH------HHHhhh---hhHhHhhhc--Cce
Q psy4673          95 DEDYIDQLRDLVSN--TGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL------CEFCQK---NFSRKEHLN--RHL  158 (171)
Q Consensus        95 ~~~~~~~l~~~l~~--~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~------~iH~r~---a~~~~~~~~--~p~  158 (171)
                      .+...+.+++++..  ..+++||   +.+..   ...+.+.|.+++++|++      .+|++.   +.+++.+.-  ..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~  208 (379)
T 2ics_A          132 SKVQASLVKKAIQELPDFVVGIKARMSRTVI---GDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDV  208 (379)
T ss_dssp             GGCCHHHHHHHHHHCTTTEEEEEEEESHHHH---TTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHCCTTCE
T ss_pred             HHHHHHHHHHHHHhhhCcceEEEEecccccc---ccchHHHHHHHHHHHHHhcCCeEEEeCCCCcchHHHHHHHhhcCCe
Confidence            22234556666542  4788877   22110   01244677888899984      456654   234433211  135


Q ss_pred             EEEecCCCc
Q psy4673         159 WVHKDSSMM  167 (171)
Q Consensus       159 iiH~fsg~~  167 (171)
                      +.|+|++..
T Consensus       209 ~~H~~~~~~  217 (379)
T 2ics_A          209 LTHCFNGKE  217 (379)
T ss_dssp             EESTTCCST
T ss_pred             eeeccCCCc
Confidence            566665543

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}

Probab=98.45  E-value=2.7e-07  Score=76.77  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC-C-----hhhHHHHHHHHHhcC-CcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS-S-----LKSSKEALRLARIYP-GMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~-~-----~~~~~~~~~l~~~~~-~~v~~~~GiHP~~~~~~   94 (171)
                      .+||+|||+....+  .+++....+.+...||..++..+. .     ++.++...+.+++.+ -.+++..|+||....+ 
T Consensus        50 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  128 (426)
T 2z00_A           50 GFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGK-  128 (426)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSS-
T ss_pred             CEEEeccccCCCCCCchHHHHHHHHHHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChh-
Confidence            39999999986432  467888888999999998887664 2     245666777666654 2366777888742221 


Q ss_pred             CHHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                         .+++++++++ ..+++|| ++.+.     .+.+.|.+.+++|.             +.++|+.+|+..
T Consensus       129 ---~~~~~~~l~~-~g~~~i~~~~~~~-----~~~~~l~~~~~~a~-------------~~g~~v~~H~~~  177 (426)
T 2z00_A          129 ---TLTPAGLLRE-AGAVLLTDDGRTN-----EDAGVLAAGLLMAA-------------PLGLPVAVHAED  177 (426)
T ss_dssp             ---SBCCHHHHHH-HTCCEEECTTSCC-----CCHHHHHHHHHHHG-------------GGTCCEEECCCC
T ss_pred             ---hHHHHHHHHH-cCCEEEECCCcCC-----CCHHHHHHHHHHHH-------------hhCCEEEEeCCC
Confidence               1233344443 3467888 54331     24567888999999             889999999864

>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*

Probab=98.42  E-value=3e-07  Score=76.77  Aligned_cols=157  Identities=11%  Similarity=0.046  Sum_probs=94.5

Q ss_pred             CcccccCCC-CCCccceEeeccCCC--CCCCCC-------C-------HHHHHHHHHhcCCCEEEEeCCCh--hhHHHHH
Q psy4673          10 NNELTKLTN-CFDNYVLIDVGANLT--NRKFGR-------D-------LESVVQRAKDSGVQKIIAIGSSL--KSSKEAL   70 (171)
Q Consensus        10 ~~~~~~~~~-~~~~~~~iDtH~HL~--~~~~~~-------d-------~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~   70 (171)
                      ...+|++-| +++.+.++++|-||.  .+.+..       +       ..+-++++++.|+..+|.+++.-  .+...+.
T Consensus        37 ~~V~TVlG~I~~~~LG~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~  116 (360)
T 3tn4_A           37 EMVETVCGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLR  116 (360)
T ss_dssp             CEEEETTEEEEGGGCCSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHH
T ss_pred             CCccccCCcCCHHHCCCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHH
Confidence            445555543 566688999999983  222211       1       12234568889999988866531  3456666


Q ss_pred             HHHHhcCCcEEEEeeeCCCCC--CCC-CH-----HHHHHHHHHh--------cc----CCeEEEe-cCCCCCCcHHHHHH
Q psy4673          71 RLARIYPGMVYSTAGIHPHEA--KSW-DE-----DYIDQLRDLV--------SN----TGNSTMN-RYNSSQWITEIKQT  129 (171)
Q Consensus        71 ~l~~~~~~~v~~~~GiHP~~~--~~~-~~-----~~~~~l~~~l--------~~----~~vvaIG-Dy~~~~~~~~~Q~~  129 (171)
                      +++++-.-.|..+.|++.+..  +.+ ..     ...++|.+++        ..    +.++++| ++..   ..+.|++
T Consensus       117 ~is~~tGv~IV~~TG~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~---~t~~E~k  193 (360)
T 3tn4_A          117 RVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKGR---ITEYEKM  193 (360)
T ss_dssp             HHHHHHCCEEEEEECCCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTTB---CCHHHHH
T ss_pred             HHHHHcCCCEEEeCccccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCCC---CCHHHHH
Confidence            677776545888999986521  110 00     0123333322        11    2344444 5432   3478999


Q ss_pred             HHHHHHHHhhH-----HHHhhhhhH--h----HhhhcC----ceEEE-ecCCCccc
Q psy4673         130 LFTTFVDITAL-----CEFCQKNFS--R----KEHLNR----HLWVH-KDSSMMKE  169 (171)
Q Consensus       130 ~F~~ql~lA~~-----~iH~r~a~~--~----~~~~~~----p~iiH-~fsg~~~e  169 (171)
                      +|++|+++|++     ++|+|.+..  +    +.+.+.    .+|.| +|+++.+.
T Consensus       194 ~frA~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~d~~~  249 (360)
T 3tn4_A          194 FFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNTDPDY  249 (360)
T ss_dssp             HHHHHHHHHHHHCCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHH
T ss_pred             HHHHHHHHHHHhCCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCCCHHH
Confidence            99999999999     799998754  2    223333    36679 79987653

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}

Probab=98.15  E-value=7.8e-06  Score=66.55  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=80.7

Q ss_pred             cceEeeccCCCCCCCC----------------------CCHHHHHHHHHhcCCCEEEEeCC-Ch--------------hh
Q psy4673          23 YVLIDVGANLTNRKFG----------------------RDLESVVQRAKDSGVQKIIAIGS-SL--------------KS   65 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~----------------------~d~~~vl~~a~~~gv~~~i~v~~-~~--------------~~   65 (171)
                      |+.||+|+|+-.+.+.                      -|++..++.+.+.||..+++.+. .+              ..
T Consensus         3 ~~~ID~H~H~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~rl~~Md~~Gv~~vl~~~~~~~~~~~d~~~~~~~~r~~   82 (312)
T 3ij6_A            3 LTKIDAYAHILPAKYYQKMLSVEPNIPNMFPFIKIKTLMDLDERLTKWPDQNTKQVISLANISPEDFTDSKTSAELCQSA   82 (312)
T ss_dssp             CCEEEEEEEECCHHHHHHHHHHCTTHHHHCGGGGCHHHHCHHHHHHTCSCTTEEEEEEECSCCGGGTSCHHHHHHHHHHH
T ss_pred             ceeEEeecccCChHHHHHHHHhCCCCCCCCCCCCCcccCCHHHHHHHHHHcCCeEEEECCCCcccccCCHHHHHHHHHHH
Confidence            6789999998754210                      15778888899999976665433 21              12


Q ss_pred             HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cC---CCCCCcHHHHHHHHHHHHHHhh
Q psy4673          66 SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RY---NSSQWITEIKQTLFTTFVDITA  139 (171)
Q Consensus        66 ~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy---~~~~~~~~~Q~~~F~~ql~lA~  139 (171)
                      .+.+.++++++|+++...+|+=|...   .+...++|++++.+.+++||.   .+   +.+.       ..|...++.|.
T Consensus        83 N~~l~~~~~~~p~rf~g~~a~vp~~~---~~~a~~el~r~~~~~G~~Gv~l~~~~~~~~l~d-------~~~~p~~~~~~  152 (312)
T 3ij6_A           83 NEELSNLVDQHPGKFAGAVAILPMNN---IESACKVISSIKDDENLVGAQIFTRHLGKSIAD-------KEFRPVLAQAA  152 (312)
T ss_dssp             HHHHHHHHHHCTTTEEEEEEECCTTC---HHHHHHHHHHHHHCTTEEEEEEESEETTEETTS-------TTTHHHHHHHH
T ss_pred             HHHHHHHHHhCCCceeeeEEecCccC---HHHHHHHHHHHHHhCCCceEeccCCCCCCCCCC-------ccHHHHHHHHH
Confidence            44556778899987543566666532   235688999988777888876   21   1111       12556678888


Q ss_pred             HHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         140 LCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       140 ~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                                   +++.|+.+|...+
T Consensus       153 -------------e~g~pv~iH~g~~  165 (312)
T 3ij6_A          153 -------------KLHVPLWMHPVFD  165 (312)
T ss_dssp             -------------HTTCCEEEECCCC
T ss_pred             -------------HcCCeEEEcCCCC
Confidence                         9999999998543

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}

Probab=98.15  E-value=1.1e-05  Score=67.05  Aligned_cols=105  Identities=14%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHhcCCCEEEEe-CCC-h-------------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          40 DLESVVQRAKDSGVQKIIAI-GSS-L-------------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        40 d~~~vl~~a~~~gv~~~i~v-~~~-~-------------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      +.+..++.+...||+..|+. +.. +             ...+.+.++++++|+++.+...+.|+..    +...++|++
T Consensus        74 ~~~~rl~~MD~~GI~~~Vls~~~~~~~~~~~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~~~~----~~a~~El~r  149 (357)
T 3nur_A           74 HHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEP----EAAAREFER  149 (357)
T ss_dssp             CHHHHHHHHHHTTEEEEEEEECTTCGGGSCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCTTSH----HHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCcEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEeCCCCCH----HHHHHHHHH
Confidence            35777899999999875543 321 1             2345567788899988776666766532    357889999


Q ss_pred             HhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         105 LVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       105 ~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++.+..++||.   .+.....+    -..|....+.|.             +++.|+.||.-.+
T Consensus       150 ~~~~~G~~Gv~l~~~~~~~~~~----d~~~~p~~~~~~-------------e~g~pV~iH~g~~  196 (357)
T 3nur_A          150 CINDLGFKGALIMGRAQDGFLD----QDKYDIIFKTAE-------------NLDVPIYLHPAPV  196 (357)
T ss_dssp             HHHTTCCCCEEEESCBTTBCTT----SGGGHHHHHHHH-------------HHTCCEEEECCCC
T ss_pred             HHhhcCceEEEeCCCCCCCCCC----CccHHHHHHHHH-------------hcCCeEEEecCCC
Confidence            88777777776   21110101    123566678888             9999999998654

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*

Probab=97.99  E-value=2.8e-05  Score=65.08  Aligned_cols=120  Identities=14%  Similarity=0.052  Sum_probs=69.5

Q ss_pred             HHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC--CCCCCCCCHHHHHHHHHHhcc---CCeEEEe--c
Q psy4673          44 VVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH--PHEAKSWDEDYIDQLRDLVSN---TGNSTMN--R  116 (171)
Q Consensus        44 vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH--P~~~~~~~~~~~~~l~~~l~~---~~vvaIG--D  116 (171)
                      .+.++...||..++.....++.   ..+.+...+-+++.+.|++  |.......++.++.+.+++..   ...+.+|  +
T Consensus       115 ~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  191 (447)
T 4f0r_A          115 AMGEMIRGGTTTINDMYFYNAA---VARAGLASGMRTFVGCSILEFPTNYASNADDYIAKGMAERSQFLGEDLLTFTLAP  191 (447)
T ss_dssp             HHHHHHHTTEEEEEECBSCHHH---HHHHHHHHTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEE
T ss_pred             HHHHHHhCCcEEEEEcccCHHH---HHHHHHHcCCeEEEEchhcCCCcccccCHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            4556778999988877655543   3344444444566777777  543333334556666665543   2234433  2


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHh---------------hhc----CceEEEecCCCcccc
Q psy4673         117 YNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKE---------------HLN----RHLWVHKDSSMMKEL  170 (171)
Q Consensus       117 y~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~---------------~~~----~p~iiH~fsg~~~el  170 (171)
                      ..    +...+.+.|.+.+++|.+     .+|+..+.+++.               +.+    ..++.|++..+.+++
T Consensus       192 ~~----~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~~~~~~~  265 (447)
T 4f0r_A          192 HA----PYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVKEHGQRPLARLQRLGLLSPRLVAAHMVHLNDAEV  265 (447)
T ss_dssp             CC----GGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHHHHHHHHTCCSTTEEEEECCSCCHHHH
T ss_pred             CC----CCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEeccCCCHHHH
Confidence            11    112345679999999998     688887643221               111    235789988776653

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A*

Probab=97.91  E-value=3.7e-05  Score=65.21  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHH----HHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673          24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEA----LRLARIYPGMVYSTAGIHPHEAKS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~----~~l~~~~~~~v~~~~GiHP~~~~~   93 (171)
                      .|||+|+|+...    ...+++....+.+...|+..++..+..  .....+.    .+.+..  . .+..+|+|+... .
T Consensus        53 G~ID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~-~  128 (461)
T 3sfw_A           53 GGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARG--K-AVIDYGFHLMVS-D  128 (461)
T ss_dssp             CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTT--T-CSSEEEEEEECS-C
T ss_pred             eeEEeEeccCcCCCCcccHhHHHHHHHHHHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhc--C-cEEEEEEEEEEe-C
Confidence            499999999753    234567777788889999887765432  2222222    222222  1 233455554433 3


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ..++.++.+++++++..+.+++   +|....   ..+.+.+.+.++.|.             ++++|+.+|+.+.
T Consensus       129 ~~~~~~~~~~~l~~~~G~~~ik~~~~~~~~~---~~~~~~l~~~~~~a~-------------~~g~~v~~Hae~~  187 (461)
T 3sfw_A          129 ANDHVLEELESVVNNEGITSLKVFMAYKNVL---MADDETLFKTLIRAK-------------ELGALVQVHAENG  187 (461)
T ss_dssp             CCHHHHHHHHHHHHTSCCCEEEEESSSTTTT---BCCHHHHHHHHHHHH-------------HHTCEEEEECSCH
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEEEecCCCc---ccCHHHHHHHHHHHH-------------hcCCEEEEEcCCH
Confidence            4567788888888745566655   652211   113345778889999             8889999997753

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}

Probab=97.82  E-value=2.3e-05  Score=65.55  Aligned_cols=121  Identities=15%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGM-VYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~   94 (171)
                      .|||+|+|+....  ..++.....+.+...||..++....      .++.+....+.+++.+.. +++..++.+....  
T Consensus        54 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  131 (428)
T 3mpg_A           54 GLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAG--  131 (428)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCS--
T ss_pred             CEEEEeeccCCCCCCchhHHHHHHHHHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCc--
Confidence            4999999997642  3467888888999999988777432      345566666666655422 3333334433211  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                        +.++.+.++... .++++++.....    .+.+.+.+.++.|+             ++++|+++|+.+..
T Consensus       132 --~~l~~~~~l~~~-G~~~~~~~~~~~----~~~~~l~~~~~~a~-------------~~g~~v~vH~~~~~  183 (428)
T 3mpg_A          132 --SEMTDFETLKEL-GAFAFTDDGVGV----QDASMMLAAMKRAA-------------KLNMAVVAHCEENT  183 (428)
T ss_dssp             --SSBCCHHHHHHT-TCCCEECTTSCC----CCHHHHHHHHHHHH-------------HTTCCEEECCCCGG
T ss_pred             --chHHHHHHHHHh-CCEEEECCCcCC----CCHHHHHHHHHHHH-------------hcCCeEEEECCChh
Confidence              122334444433 455566322111    24567889999999             99999999998653

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A

Probab=97.80  E-value=0.00012  Score=62.45  Aligned_cols=121  Identities=13%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             ceEeeccCCCCCCC----CCCHHHHHHHHHhcCCCEEEEeC-CCh-----hhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673          24 VLIDVGANLTNRKF----GRDLESVVQRAKDSGVQKIIAIG-SSL-----KSSKEALRLARIYPGMVYSTAGIHPHEAKS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~~----~~d~~~vl~~a~~~gv~~~i~v~-~~~-----~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~   93 (171)
                      .|||+|+|+....+    .+++....+.+...||..++... +.+     +.++...+...+..   +..+|+|+... .
T Consensus        79 GlID~H~H~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~-~  154 (501)
T 2vm8_A           79 GGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKS---CCDYSLHVDIS-E  154 (501)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEEEECC-S
T ss_pred             CEEEeeecccccccCCCcHHHHHHHHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCC---eeEEEEEEEec-C
Confidence            39999999986432    35777778888999998877643 333     22334344443322   23567876432 2


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      +.....+++++++....+.++.   .+..   ....+.+.|.+.+++|+             ++++|+.+|...
T Consensus       155 ~~~~~~~e~~~l~~~~G~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~-------------~~g~~v~~H~e~  212 (501)
T 2vm8_A          155 WHKGIQEEMEALVKDHGVNSFLVYMAFKD---RFQLTDCQIYEVLSVIR-------------DIGAIAQVHAEN  212 (501)
T ss_dssp             CSHHHHHHHHHHHHHSCCCEEEEESSSTT---TTBCCHHHHHHHHHHHH-------------HHTCEEEEECCC
T ss_pred             CCcccHHHHHHHHHhCCceEEEEeeccCC---CCCCCHHHHHHHHHHHH-------------HhCCEEEEEccC
Confidence            3444566777776433333332   2211   11235667889999999             888888888764

>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*

Probab=97.78  E-value=8e-05  Score=62.20  Aligned_cols=132  Identities=14%  Similarity=0.250  Sum_probs=86.7

Q ss_pred             cCCCCCCccceEeeccCCCCCCCC--------------------------C------------CHHH-HHHHHHhcCCCE
Q psy4673          15 KLTNCFDNYVLIDVGANLTNRKFG--------------------------R------------DLES-VVQRAKDSGVQK   55 (171)
Q Consensus        15 ~~~~~~~~~~~iDtH~HL~~~~~~--------------------------~------------d~~~-vl~~a~~~gv~~   55 (171)
                      +.+-.+..|+.||+|-|+....+.                          .            |++. .++.+.+.||+.
T Consensus        27 ~~~~~~~~m~~i~~eeh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~rl~~MD~~GId~  106 (373)
T 4inf_A           27 LKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERATQILERLLDLGERRIADMDATGIDK  106 (373)
T ss_dssp             CCSSSTTSSCCEEEEEEECCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHCCSHHHHHHHHHHHCCSHHHHHHHHHTTCCE
T ss_pred             HhcCCCCCCeEEEeecccCCHHHHHHHHHhcccccccccccccccccccCccccccccCccccCchHHHHHHHHHCCCcE
Confidence            345556668999999998653220                          0            3334 778899999997


Q ss_pred             EEEeCCCh----------------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cC
Q psy4673          56 IIAIGSSL----------------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RY  117 (171)
Q Consensus        56 ~i~v~~~~----------------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy  117 (171)
                      .|+..+.+                ...+.+.++++++|+++.+...++|+..    +...++|++++.+..++||.  ..
T Consensus       107 ~Vl~~~~pg~~~~~d~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~~~~----~~a~~EL~r~~~~~G~~Gv~l~~~  182 (373)
T 4inf_A          107 AILALTSPGVQPLHDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQDP----EWSAREIHRGARELGFKGIQINSH  182 (373)
T ss_dssp             EEEEECTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCTTSH----HHHHHHHHHHHHTSCCCCEEECSC
T ss_pred             EEEccCCccccccCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEecCCCCH----HHHHHHHHHHHhhcCceEEEECCC
Confidence            66542211                1345567778899988777777887642    34678899988777777777  21


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673         118 NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       118 ~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      ......   --..|....+.|.             ++++|+.||...+.
T Consensus       183 ~~g~~l---~d~~~~pi~~~~~-------------e~g~pV~iH~g~~~  215 (373)
T 4inf_A          183 TQGRYL---DEEFFDPIFRALV-------------EVDQPLYIHPATSP  215 (373)
T ss_dssp             BTTBCT---TSGGGHHHHHHHH-------------HHTCCEEECCCCCC
T ss_pred             CCCCCC---CCcchHHHHHHHH-------------HcCCeEEECCCCCC
Confidence            111000   0123566678888             99999999987654

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6

Probab=97.62  E-value=0.00033  Score=58.46  Aligned_cols=118  Identities=9%  Similarity=0.086  Sum_probs=70.5

Q ss_pred             ceEeeccCCCCCC-C--CCCHHHHHHHHHhcCCCEEEEeC-C-C-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673          24 VLIDVGANLTNRK-F--GRDLESVVQRAKDSGVQKIIAIG-S-S-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~~-~--~~d~~~vl~~a~~~gv~~~i~v~-~-~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~   93 (171)
                      .|||+|+|+.... +  .+++....+.+...||..++..+ . .     .+.+...++..+... .   .+|+|+.....
T Consensus        55 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~  130 (458)
T 1gkr_A           55 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK-V---DFALYGGGVPG  130 (458)
T ss_dssp             CEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS-S---EEEEEEECCTT
T ss_pred             CEEEeeecccCCCCCCchhHHHHHHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCc-e---eEEEEeccCCC
Confidence            3999999998643 2  35677777788889999888766 2 2     234444455444433 1   24445432211


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                          .++.+++++.. .+.+|+   +++........+.+.|.+.++.|.             ++++|+.+|..
T Consensus       131 ----~~~~~~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~a~-------------~~g~~v~~H~~  185 (458)
T 1gkr_A          131 ----NLPEIRKMHDA-GAVGFKSMMAASVPGMFDAVSDGELFEIFQEIA-------------ACGSVIVVHAE  185 (458)
T ss_dssp             ----CHHHHHHHHHT-TCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHH-------------HHTCEEEEECC
T ss_pred             ----CHHHHHHHHHc-CCcEEEEeecccCCCCcccCCHHHHHHHHHHHH-------------HcCCEEEEECC
Confidence                24456666543 445554   655321111235678889999999             77777777764

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp}

Probab=97.60  E-value=0.00014  Score=60.99  Aligned_cols=121  Identities=14%  Similarity=0.174  Sum_probs=74.9

Q ss_pred             ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~   94 (171)
                      .|||+|+|+...  ...++.....+.+...|+..++....      .++.++..++.+++..- .+++..++.+....  
T Consensus        53 G~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  130 (424)
T 3gri_A           53 GFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLG--  130 (424)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCS--
T ss_pred             CeEEeeecCCCCCCCCHHHHHHHHHHHHhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCc--
Confidence            499999999853  23467888888889999988777654      34566666666665442 12222333332211  


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                        +.++.+.++... .++++++......    +.+.+.+.+++|+             ++++|+++|+.+..
T Consensus       131 --~~l~~l~~l~~~-G~~~~~~~~~~~~----~~~~l~~~~~~a~-------------~~g~~v~~H~e~~~  182 (424)
T 3gri_A          131 --KELVDFPALVKE-GAFAFTDDGVGVQ----TASMMYEGMIEAA-------------KVNKAIVAHCEDNS  182 (424)
T ss_dssp             --SSBCCHHHHHTT-TCCCEEECSSCCC----SHHHHHHHHHHHH-------------HHTCCEEECCCCGG
T ss_pred             --chHHHHHHHHhc-CcEEEecCCcCcC----CHHHHHHHHHHHH-------------hcCCEEEEeCCCHH
Confidence              123344554433 4556663211111    3457888899999             99999999988764

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*

Probab=97.58  E-value=0.00017  Score=61.05  Aligned_cols=119  Identities=16%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcC-CcEEEEeeeCCCCCCCC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYP-GMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~-~~v~~~~GiHP~~~~~~   94 (171)
                      .|||+|+|+....  ..+++....+.+...||..++..+..      .+.++..++.++..+ -+++++.+++|..... 
T Consensus       101 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~-  179 (467)
T 1xrt_A          101 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGK-  179 (467)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSS-
T ss_pred             CEEEEeecccCCCCCchhhHHHHHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcc-
Confidence            3999999997632  24577788888999999988876642      245566666555543 2366666677643221 


Q ss_pred             CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                         .++.+++++. ..++++|+....    ..+.+.|++.+++|.             ++++|+.+|...
T Consensus       180 ---~~~~~~~l~~-~g~~~i~~~~~~----~~~~e~l~~~~~~A~-------------~~g~~v~~H~~~  228 (467)
T 1xrt_A          180 ---EIADFYSLKE-AGCVAFTDDGSP----VMDSSVMRKALELAS-------------QLGVPIMDHCED  228 (467)
T ss_dssp             ---SBCCHHHHHH-HTCCCBCCTTSC----CCCHHHHHHHHHHHH-------------HHTCEEEECCCG
T ss_pred             ---cHHHHHHHHH-cCCEEEEcCCCC----CCCHHHHHHHHHHHH-------------hcCCEEEEECCC
Confidence               1223333333 245667732211    124457888999999             888888888765

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6

Probab=97.54  E-value=0.00017  Score=62.16  Aligned_cols=126  Identities=17%  Similarity=0.095  Sum_probs=70.9

Q ss_pred             ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||+|+|+....    ..+++....+.+...|+..++..+..  .....++++..... .......+|+|+... .+.+
T Consensus        61 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~-~~~~  139 (521)
T 2ftw_A           61 GGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAIT-WWSE  139 (521)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECC-SCCH
T ss_pred             CEEeeecccCcCCCCccCHHHHHHHHHHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeec-CCCh
Confidence            3999999997532    12567777778888999877765432  23333333321111 011233568886422 2444


Q ss_pred             HHHHHHHHHhccCCeEEEecCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          97 DYIDQLRDLVSNTGNSTMNRYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIGDy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ...+++.+++....+..+. ++.. ......+.+.|.+.+++|+             ++++|+.+|..+
T Consensus       140 ~~~~~l~~l~~~~G~~~~k-~~~~~~~~~~~~~e~l~~~~~~A~-------------~~g~~v~vH~e~  194 (521)
T 2ftw_A          140 QVSREMEILVKERGVNSFK-CFMAYKNSFMVTDQEMYHIFKRCK-------------ELGAIAQVHAEN  194 (521)
T ss_dssp             HHHHHHHHHHHHSCCCEEE-EESSCTTTTBCCHHHHHHHHHHHH-------------HHTCEEEEECSC
T ss_pred             hHHHHHHHHHHhCCCCEEE-EEeccCCCcCCCHHHHHHHHHHHH-------------HcCCEEEEEcCC
Confidence            5667777776443333332 1111 0111234567888899999             777777777754

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A*

Probab=97.34  E-value=0.001  Score=55.48  Aligned_cols=123  Identities=16%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHH-HHhcCCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRL-ARIYPGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l-~~~~~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .|||+|+|+...    ...++.....+.+...||..++..+..  .....+.++. .+......+..+|+|+... ...+
T Consensus        53 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  131 (458)
T 1gkp_A           53 GFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVS-KFDE  131 (458)
T ss_dssp             CEEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECC-CCCT
T ss_pred             CEEecccCCCcCCCCCcCHhHHHHHHHHHHhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEeec-CCch
Confidence            399999999753    134566666677778999887775542  2333333321 1111111233467775432 2233


Q ss_pred             HHHHHHHHHhccC-CeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673          97 DYIDQLRDLVSNT-GNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus        97 ~~~~~l~~~l~~~-~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                      +.++.+++++... ..+.++ ++.....   ...+.+.+.+++|+             ++++|+.+|.-
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~l~~~~~~a~-------------~~~~~v~~H~e  184 (458)
T 1gkp_A          132 KTEGQLREIVADGISSFKIFLSYKNFFG---VDDGEMYQTLRLAK-------------ELGVIVTAHCE  184 (458)
T ss_dssp             THHHHHHHHHHTTCCEEEEEECSTTTTB---CCHHHHHHHHHHHH-------------HHTCEEEEEES
T ss_pred             hhHHHHHHHHHhCCCEEEEEeccCCCcC---CCHHHHHHHHHHHH-------------hcCCEEEEEcC
Confidence            4577777776542 122344 5532111   12345777889999             77777777773

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}

Probab=97.19  E-value=0.0028  Score=53.18  Aligned_cols=96  Identities=9%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             HHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC--CCCCCCCCHHHHHHHHHHhc---c-C----CeEE
Q psy4673          44 VVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH--PHEAKSWDEDYIDQLRDLVS---N-T----GNST  113 (171)
Q Consensus        44 vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH--P~~~~~~~~~~~~~l~~~l~---~-~----~vva  113 (171)
                      .+.++...|+..++.....++   .+.+.+.+.+-+.+.+.|++  |.......++.++...+++.   . +    ..+.
T Consensus       137 ~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  213 (468)
T 3lnp_A          137 AIAEMIQSGTTTFADMYFYPQ---QSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQ  213 (468)
T ss_dssp             HHHHHHHTTEEEEEECCSCHH---HHHHHHHHHTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEE
T ss_pred             HHHHHHhCCcEEEEEcccCHH---HHHHHHHHcCCeEEEeccccCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceEE
Confidence            345577889988776655443   33444455554566777777  54322223344444444432   1 2    1444


Q ss_pred             Ee---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673         114 MN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus       114 IG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a  147 (171)
                      +|   ...+.. +    .+.|.+.+++|++     .+|+...
T Consensus       214 ~~~~~~~~~~~-~----~~~l~~~~~~A~~~g~~v~~H~~e~  250 (468)
T 3lnp_A          214 IGFGPHAPYTV-S----DEPLKEITMLSDQLDMPVQIHLHET  250 (468)
T ss_dssp             EEEEECCTTTS-C----HHHHHHHHHHHHHHTCCEEEEESCS
T ss_pred             EEEEcCCCCCC-C----HHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            44   222211 1    2457888899997     5777654

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}

Probab=97.10  E-value=0.0011  Score=57.44  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             ceEeeccCCCCCCC----CCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNRKF----GRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~~----~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||+|+|+.....    .++.....+.+...|+..++..+..  .....+.++..... .......+|+|+.. ..+.+
T Consensus        84 G~ID~H~Hl~~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~-~~~~~  162 (541)
T 2vr2_A           84 GGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAV-TWWSD  162 (541)
T ss_dssp             CEEEEEECTTCBCSSSBCSCCTTHHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEE-CSCSH
T ss_pred             CEEEecccCCCCCCCCcCHHHHHHHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeeecc-cCCCH
Confidence            39999999976421    2455566677888999887764432  22333333222111 11123346777532 23344


Q ss_pred             HHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          97 DYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ...+++++++....+..+.   .+...   ...+.+.|.+.++.|+             ++++++.+|.-+
T Consensus       163 ~~~~el~~l~~~~G~~~~k~~~~~~~~---~~~~~~~l~~~~~~a~-------------~~g~~v~~H~e~  217 (541)
T 2vr2_A          163 QVKEEMKILVQDKGVNSFKMFMAYKDL---YMVTDLELYEAFSRCK-------------EIGAIAQVHAEN  217 (541)
T ss_dssp             HHHHHHHHHHHTSCCCEEEEESSSTTT---TBCCHHHHHHHHHHHH-------------HHTCEEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeccCCc---cCCCHHHHHHHHHHHH-------------HcCCEEEEEcCC
Confidence            5667777776543333332   22111   1123456777889999             667777777643

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}

Probab=97.08  E-value=0.011  Score=49.85  Aligned_cols=94  Identities=9%  Similarity=-0.066  Sum_probs=51.1

Q ss_pred             HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCC--CCCCCCHHHHHHHHHHhc---cCCeEEEe---cC
Q psy4673          46 QRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPH--EAKSWDEDYIDQLRDLVS---NTGNSTMN---RY  117 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~--~~~~~~~~~~~~l~~~l~---~~~vvaIG---Dy  117 (171)
                      .++...|+..+...+..++.   ..+.+.+.+-+.+.+.|++..  ......++.++..++++.   ....+.+|   ..
T Consensus       126 ~~~l~~GvTtv~d~~~~~~~---~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  202 (472)
T 4dzh_A          126 AEMLRGGTTCVNENYFFADV---QAAVYKQHGFRALVGAVIIDFPTAWASSDDEYFARAGELHDQWRDDPLISTAFAPHA  202 (472)
T ss_dssp             HHHHHTTEEEEEEECSCHHH---HHHHHHHTTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECC
T ss_pred             HHHHhCCcEEEEEcccCHHH---HHHHHHHhCCeEEEEecccCCCcccccCHHHHHHHHHHHHHHhCCCCceEEEEecCC
Confidence            34778999888877755543   344445555456667777632  211222344555444432   23344433   32


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673         118 NSSQWITEIKQTLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus       118 ~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a  147 (171)
                      .+.. +    .+.|++.+++|.+     .+|+...
T Consensus       203 ~~~~-~----~~~l~~~~~~A~~~g~~v~iH~~e~  232 (472)
T 4dzh_A          203 PYTV-N----DANFERVRMLADQLDMPVHLHTHET  232 (472)
T ss_dssp             TTTS-C----HHHHHHHHHHHHHHTCCEEEEESCC
T ss_pred             CCCC-C----HHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            2221 1    1457888899997     4677653

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=96.81  E-value=0.0034  Score=51.58  Aligned_cols=142  Identities=11%  Similarity=0.048  Sum_probs=72.9

Q ss_pred             ceEeeccCCCCCCCC------CC-------HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHh-cCCcEEE------E
Q psy4673          24 VLIDVGANLTNRKFG------RD-------LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI-YPGMVYS------T   83 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~------~d-------~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~-~~~~v~~------~   83 (171)
                      .|||+|+|+....+.      .+       ....++++...||..+...+.....+.+.++.... -| +++.      .
T Consensus        60 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~l~~~~~~~~~~g~-r~~~~g~~~~~  138 (423)
T 3feq_A           60 GFIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDAGGADWSLMQAVETGLVSGP-RIFPSGKALSQ  138 (423)
T ss_dssp             CEEEEEECTTCCSSCHHHHHHSCHHHHHHTHHHHHHHHHHTTEEEEEECSSCCHHHHHHHHTTSSCSC-EEECCCSEEEC
T ss_pred             CeeeeEeeecccCCChhhhhcCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchHHHHHHHHcCCCCCC-eEEecCccccc
Confidence            499999999875331      01       12445667889999988888766555444432211 12 2322      2


Q ss_pred             eeeCCCCCC---------------------CCCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHH
Q psy4673          84 AGIHPHEAK---------------------SWDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTF  134 (171)
Q Consensus        84 ~GiHP~~~~---------------------~~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~q  134 (171)
                      .|-|+....                     ...++..+.+++++...    ++.+.|    ++.. ........+.|.+.
T Consensus       139 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p-~~~~~~~~e~l~~~  217 (423)
T 3feq_A          139 TGGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDP-IANTQYSEDEIRAI  217 (423)
T ss_dssp             TTSTTCCCCC---CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCC-TTSBCSCHHHHHHH
T ss_pred             CCCCccccccccccccccccccccccceecCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCC-cccccCCHHHHHHH
Confidence            233432210                     11133445555555432    222223    2211 11112234568888


Q ss_pred             HHHhhH-----HHHhhhh--hHhHhhhcCceEEEecCCCc
Q psy4673         135 VDITAL-----CEFCQKN--FSRKEHLNRHLWVHKDSSMM  167 (171)
Q Consensus       135 l~lA~~-----~iH~r~a--~~~~~~~~~p~iiH~fsg~~  167 (171)
                      +++|.+     .+|+...  ....++.+...|.|++..+.
T Consensus       218 ~~~A~~~g~~v~~H~~~~~~i~~~l~~g~~~i~H~~~~~~  257 (423)
T 3feq_A          218 VDEAEAANTYVMAHAYTGRAIARAVRCGVRTIEHGNLVDE  257 (423)
T ss_dssp             HHHHHHTTCCEEEEEEEHHHHHHHHHHTCCEEEEEEECCH
T ss_pred             HHHHHHCCCeEEEEeCChHHHHHHHHcCCCEEeccCcCCH
Confidence            899996     4676643  23344556666777765543

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=96.78  E-value=0.0013  Score=54.66  Aligned_cols=48  Identities=17%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             ceEeeccCCCCCCCC------CCH-------HHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673          24 VLIDVGANLTNRKFG------RDL-------ESVVQRAKDSGVQKIIAIGSSLKSSKEALR   71 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~------~d~-------~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~   71 (171)
                      .+||+|+|+....+.      .+.       ...+.++...||..+..++.....+.+.++
T Consensus        60 GliD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~l~~~i~  120 (426)
T 2r8c_A           60 GLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVE  120 (426)
T ss_dssp             CEEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHHHHHHH
T ss_pred             CeEeeeeccccccCCchhhccCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchHHHHHHHH
Confidence            499999999875331      111       134456678999999888876655544443

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.0039  Score=53.51  Aligned_cols=123  Identities=20%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCC-Ch-hhHHHHHHH-HHhcCCcEEEEeeeCCCCCCCCCH
Q psy4673          24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGS-SL-KSSKEALRL-ARIYPGMVYSTAGIHPHEAKSWDE   96 (171)
Q Consensus        24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~-~~-~~~~~~~~l-~~~~~~~v~~~~GiHP~~~~~~~~   96 (171)
                      .+||+|+|+....    ..+++....+.+...|+..++.... .+ .+....++. .+.... ...-+++|.... ...+
T Consensus        51 G~ID~H~H~~~~~~~~~~~e~~~~~~~aa~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~-~~~d~~~~~~~~-~~~~  128 (490)
T 3dc8_A           51 GGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTR-ANCDYSFHMAIT-WWGE  128 (490)
T ss_dssp             CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTT-CSSEEEEEEECC-SCSH
T ss_pred             CEEeeccccCCCCCCCCCHHHHHHHHHHHHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhc-ccceeeeEEEEe-cCcH
Confidence            4999999997642    2457777778888899987766432 22 233333322 111111 122334443222 2344


Q ss_pred             HHHHHHHHHhccCCeEEEe---cCCCCC-CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673          97 DYIDQLRDLVSNTGNSTMN---RYNSSQ-WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus        97 ~~~~~l~~~l~~~~vvaIG---Dy~~~~-~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      +.++++.+++.+..+.+++   +|.... .+.+    .+.+-++.|.             +++.|+.+|+-+.
T Consensus       129 ~~l~el~~l~~~~G~~~~k~~~~~~~~~~~~~~----~l~~~~~~a~-------------~~g~~v~~HaE~~  184 (490)
T 3dc8_A          129 QVFNEMETIVKDKGINTFKHFMAYKGALMVDDD----EMFSSFQRCA-------------ALGALPLVHAENG  184 (490)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEESCSTTTTBCCHH----HHHHHHHHHH-------------HHTCEEEEECSCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCCCccCCHH----HHHHHHHHHH-------------hcCCEEEEecCCh
Confidence            5677888877444555554   442211 1222    3556678888             8889999997654

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*

Probab=96.40  E-value=0.055  Score=44.79  Aligned_cols=41  Identities=5%  Similarity=-0.131  Sum_probs=23.6

Q ss_pred             HHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673          47 RAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGMVYSTAGIH   87 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~v~~~~GiH   87 (171)
                      ++...|+..+...+. .+     ...+..++..++.+-+.+.+.|.+
T Consensus       117 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~  163 (456)
T 3ls9_A          117 ESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSM  163 (456)
T ss_dssp             HHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             HHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCEEEEEcccc
Confidence            356789988776632 22     344555565566554455555554

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}

Probab=96.25  E-value=0.061  Score=44.59  Aligned_cols=95  Identities=6%  Similarity=-0.054  Sum_probs=47.5

Q ss_pred             HHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC--CCCCCCCCHHHHHHHHHHhc---cCCeEEEe---c
Q psy4673          45 VQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH--PHEAKSWDEDYIDQLRDLVS---NTGNSTMN---R  116 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH--P~~~~~~~~~~~~~l~~~l~---~~~vvaIG---D  116 (171)
                      +.++...|+..+......++...   +.+.+.+-+.+.+.++.  |.......++.++...+++.   ....+.+|   .
T Consensus       118 ~~~~l~~GvTtv~d~~~~~~~~~---~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  194 (451)
T 4dyk_A          118 IAEQVKGGITCFSDMYFYPQAIC---GVVHDSGVRAQVAIPVLDFPIPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPH  194 (451)
T ss_dssp             HHHHHHTTEEEEEEECSCHHHHH---HHHHHHTCEEEEEEEECSSCBTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEEC
T ss_pred             HHHHHhCCcEEEEEcccCHHHHH---HHHHHcCCeEEEEchhhCCCCccccCHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence            34556899988877766665433   33334443333344443  32211222344555554443   22334333   2


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673         117 YNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus       117 y~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a  147 (171)
                      ..+.. +    .+.|.+.+++|++     .+|+...
T Consensus       195 ~~~~~-~----~~~l~~~~~~A~~~g~~v~~H~~e~  225 (451)
T 4dyk_A          195 APYTV-S----DDKLEQILVLTEELDASIQMHVHET  225 (451)
T ss_dssp             CGGGS-C----HHHHHHHHHHHHHHTCCEEEEESCC
T ss_pred             CCCcc-C----HHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            11111 1    2457888899997     5677654

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A

Probab=95.65  E-value=0.047  Score=43.61  Aligned_cols=54  Identities=17%  Similarity=0.041  Sum_probs=37.1

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP   77 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~   77 (171)
                      |+++|.|||.....-...+++++++|.+.|++. |+++-  +...+.+..+.+++++
T Consensus         1 M~~~DLH~Ht~~SDg~~~~~elv~~A~~~Gl~~-iaiTDH~~~~g~~~~~~~~~~~g   56 (292)
T 2yb1_A            1 MANIDLHFHSRTSDGALTPTEVIDRAAARAPAL-LALTDHDCTGGLAEAAAAAARRG   56 (292)
T ss_dssp             -CCEECCBCCTTTTCSSCHHHHHHHHHTTCCSE-EEECCBTCCTTHHHHHHHHHHTT
T ss_pred             CCccccccCCCccCCCCCHHHHHHHHHHCCCCE-EEEecCCccccHHHHHHHHHHcC
Confidence            678999999976533457899999999999985 45443  2334555555555543

>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*

Probab=95.49  E-value=0.034  Score=48.83  Aligned_cols=105  Identities=14%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-------------hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-------------KSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-------------~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.+       ...|...|+..++..+++|             ......++.+++.+-.    +|+|.-.
T Consensus       132 G~ID~HvH~~~Pg~-------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~----~~~~g~~  200 (570)
T 4ac7_C          132 GGIDTHVHFINPDQ-------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPIN----VGILGKG  200 (570)
T ss_dssp             CEEEEEEECCCTTH-------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSE----EEEEEEC
T ss_pred             CEEecccccCCcch-------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhhCCee----EEEEecc
Confidence            48999999975421       2567788998887544432             2334444555554422    2333211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      . ..   .++.|.++++ ..++++.   |+..       ..+.+.+.+++|.             +++.|+.+|+-+
T Consensus       201 ~-~~---~l~el~el~~-aGa~gfK~~~~~~~-------~~~~L~~aL~~A~-------------~~g~~V~iHae~  252 (570)
T 4ac7_C          201 H-GS---SIAPIMEQID-AGAAGLKIHEDWGA-------TPASIDRSLTVAD-------------EADVQVAIHSDT  252 (570)
T ss_dssp             C-CS---SHHHHHHHHH-HTCCEEEEEGGGCC-------CHHHHHHHHHHHH-------------HHTCEEEEECCT
T ss_pred             C-Cc---CHHHHHHHHH-cCCCeEeeccCCCC-------CHHHHHHHHHHHH-------------HcCCEEEEEcCC
Confidence            1 11   2445555543 2355555   4322       2335778889999             666666666653

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*

Probab=95.49  E-value=0.034  Score=48.83  Aligned_cols=105  Identities=14%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-------------hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-------------KSSKEALRLARIYPGMVYSTAGIHPHE   90 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-------------~~~~~~~~l~~~~~~~v~~~~GiHP~~   90 (171)
                      .+||+|+|+..+.+       ...|...|+..++..+++|             ......++.+++.+-.    +|+|.-.
T Consensus       132 G~ID~HvH~~~Pg~-------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~----~~~~g~~  200 (570)
T 4ubp_C          132 GGIDTHVHFINPDQ-------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPIN----VGILGKG  200 (570)
T ss_dssp             CEEEEEEECCCTTH-------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSE----EEEEEEC
T ss_pred             CEEEcccCCCCcch-------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhhCCee----EEEEecc
Confidence            48999999975421       2567788998887544432             2334444555554422    2333211


Q ss_pred             CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      . ..   .++.|.++++ ..++++.   |+..       ..+.+.+.+++|.             +++.|+.+|+-+
T Consensus       201 ~-~~---~l~el~el~~-aGa~gfK~~~~~~~-------~~~~L~~aL~~A~-------------~~g~~V~iHae~  252 (570)
T 4ubp_C          201 H-GS---SIAPIMEQID-AGAAGLKIHEDWGA-------TPASIDRSLTVAD-------------EADVQVAIHSDT  252 (570)
T ss_dssp             C-CS---SHHHHHHHHH-HTCCEEEEEGGGCC-------CHHHHHHHHHHHH-------------HHTCEEEEECCT
T ss_pred             C-Cc---CHHHHHHHHH-cCCCeEeeccCCCC-------CHHHHHHHHHHHH-------------HcCCEEEEEcCC
Confidence            1 11   2445555543 2355555   4322       2335778889999             666666666653

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}

Probab=95.31  E-value=0.35  Score=39.12  Aligned_cols=19  Identities=0%  Similarity=-0.185  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhhH-----HHHhhhh
Q psy4673         129 TLFTTFVDITAL-----CEFCQKN  147 (171)
Q Consensus       129 ~~F~~ql~lA~~-----~iH~r~a  147 (171)
                      +.|.+.+++|.+     .+|+..+
T Consensus       198 ~~l~~~~~~A~~~g~~v~~H~~~~  221 (403)
T 2qt3_A          198 GSLDLCFKLAKEYDVDIDYHIHDI  221 (403)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCeEEEeCCc
Confidence            568888999996     4776643

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9

Probab=95.14  E-value=0.19  Score=42.28  Aligned_cols=37  Identities=19%  Similarity=0.060  Sum_probs=24.2

Q ss_pred             HHHHHhcCCCEEEEeC-CChhhHHHHHHHHHhcCCcEE
Q psy4673          45 VQRAKDSGVQKIIAIG-SSLKSSKEALRLARIYPGMVY   81 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~-~~~~~~~~~~~l~~~~~~~v~   81 (171)
                      +.++...||..+...+ +.++..+...+.+++.+-+++
T Consensus       124 ~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~  161 (475)
T 2ood_A          124 LDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRVI  161 (475)
T ss_dssp             HHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeEE
Confidence            5678889998877755 356666666666655543343

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=95.04  E-value=0.026  Score=43.30  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             cceEeeccCCCCCC-CCCCHHHHHHHHHhcCCCEEEE
Q psy4673          23 YVLIDVGANLTNRK-FGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        23 ~~~iDtH~HL~~~~-~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      |+++|.|||..... -..++++++++|.+.|++.+.+
T Consensus         1 m~~~DlH~Ht~~Sd~g~~~~~e~v~~A~~~Gl~~iai   37 (245)
T 1m65_A            1 MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAI   37 (245)
T ss_dssp             -CCEECCBCCTTSTTCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEeCcCCCCCCCCCCcHHHHHHHHHHCCCCEEEE
Confidence            67899999987642 1237899999999999986443

>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase, bimetal binding site, enzyme FUNC initiative, EFI; HET: SO4; 1.60A {Mycobacterium avium subsp}

Probab=94.97  E-value=0.037  Score=46.78  Aligned_cols=107  Identities=5%  Similarity=-0.039  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHhcCCCEEEEeCCC-----------hhh--------HHHHHHHHH-hcC-CcEEEEeeeCCCCCCCCCHHH
Q psy4673          40 DLESVVQRAKDSGVQKIIAIGSS-----------LKS--------SKEALRLAR-IYP-GMVYSTAGIHPHEAKSWDEDY   98 (171)
Q Consensus        40 d~~~vl~~a~~~gv~~~i~v~~~-----------~~~--------~~~~~~l~~-~~~-~~v~~~~GiHP~~~~~~~~~~   98 (171)
                      +++..++.+.+.||...|+..+.           ++.        .+.+.+..+ ++| +++.+...+.|+.    .+..
T Consensus       102 d~e~rl~~MD~~GId~~Vl~p~~~~~~~~~~~~d~e~a~~~~r~~Nd~lae~~~~~~P~~Rf~g~a~v~~~d----~~~a  177 (423)
T 4dzi_A          102 NRDARIAVMDEQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPIVSLAD----PTRA  177 (423)
T ss_dssp             CHHHHHHHHHHHTEEEEEEECSGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHTCSSCTTCCEEECCBCCCSS----HHHH
T ss_pred             CHHHHHHHHHHcCCcEEEECCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCccC----HHHH
Confidence            78999999999999976665332           111        233445556 788 8877666666653    2357


Q ss_pred             HHHHHHHhccCCeEEEe---cCC---CCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673          99 IDQLRDLVSNTGNSTMN---RYN---SSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus        99 ~~~l~~~l~~~~vvaIG---Dy~---~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                      +++|++++. ..++||.   .+.   .......  -..|....+.|.             +++.|+.||.-.+.
T Consensus       178 ~~EL~r~~~-~G~~Gv~l~p~~~~~~~g~~~l~--d~~~~pl~~~~~-------------elg~pV~iH~g~~~  235 (423)
T 4dzi_A          178 VEEVDFVLA-RGAKLVLVRPAPVPGLVKPRSLG--DRSHDPVWARLA-------------EAGVPVGFHLSDSG  235 (423)
T ss_dssp             HHHHHHHHH-TTCSCEECCSSCBCCSSSCBCTT--CGGGHHHHHHHH-------------HHTCCEEEECCCCS
T ss_pred             HHHHHHHHH-cCCeEEEEecCCCCCCCCCCCCC--CccHHHHHHHHH-------------hcCCeEEEeCCCCC
Confidence            888888875 4566655   211   1100000  123556678888             99999999987654

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*

Probab=94.64  E-value=0.14  Score=44.87  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=24.7

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL   63 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~   63 (171)
                      .+||+|+|+..+.       .+..+...||..++..++.+
T Consensus       131 GlID~HvHl~~p~-------~~~~al~~GvTTv~d~g~~p  163 (569)
T 1e9y_B          131 GGIDTHIHFISPQ-------QIPTAFASGVTTMIGGGTGP  163 (569)
T ss_dssp             CEEEEEEETTCTT-------HHHHHHHTTEEEEEEECCSS
T ss_pred             CEEEEeecCCCcH-------HHHHHHhCCeeEEEcCCcCC
Confidence            4899999997532       15677889999988876543

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9

Probab=94.57  E-value=0.75  Score=37.85  Aligned_cols=36  Identities=11%  Similarity=0.101  Sum_probs=21.6

Q ss_pred             HHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEE
Q psy4673          46 QRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVY   81 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~   81 (171)
                      +.+...||..+...+. .++.....++..++.+.+++
T Consensus       120 ~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~  156 (439)
T 2i9u_A          120 KDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAY  156 (439)
T ss_dssp             HHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEE
Confidence            5678899988777654 44444555554455443333

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=94.50  E-value=0.079  Score=41.04  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=26.4

Q ss_pred             eEeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          25 LIDVGANLTNR-KFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        25 ~iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      ++|.|||.... .-...+++++++|.+.|++.+.+
T Consensus         1 ~~DlH~Ht~~S~DG~~~~ee~v~~A~~~Gl~~iai   35 (267)
T 2yxo_A            1 MVDSHVHTPLCGHAEGHPEAYLEEARAKGLKGVVF   35 (267)
T ss_dssp             CEEEEECCGGGSSCCSCHHHHHHHHHHTTCSEEEE
T ss_pred             CCccCcCcCCCCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            48999998653 22357899999999999986543

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9

Probab=94.48  E-value=0.38  Score=40.22  Aligned_cols=41  Identities=15%  Similarity=-0.062  Sum_probs=24.3

Q ss_pred             HHHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCcEEEEeee
Q psy4673          46 QRAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGMVYSTAGI   86 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~v~~~~Gi   86 (171)
                      .++...||..+...+. .+     +.++...+..++.+-+++.+.|.
T Consensus       124 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~  170 (492)
T 2paj_A          124 IELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGG  170 (492)
T ss_dssp             HHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcCCEEEEEchh
Confidence            3478899988877653 33     34566666666555345544443

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*

Probab=94.38  E-value=0.18  Score=40.78  Aligned_cols=53  Identities=15%  Similarity=0.116  Sum_probs=38.0

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY   76 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~   76 (171)
                      .+.+|.|||-....-...+++++++|.+.|++. |.++.  +...+.+..+.++++
T Consensus        12 ~~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~-iaiTDH~~~~g~~~~~~~~~~~   66 (301)
T 3o0f_A           12 AQGWDIHCHTVFSDGTETPRTLVEQARKLGLHG-VAIADHDTTAGWDEATEASEEI   66 (301)
T ss_dssp             SSSEEEEECCTTTTCSSCHHHHHHHHHHTTCSE-EEECCBTCCTTHHHHHHHHHHH
T ss_pred             cceEEeeECCCCCCCCCCHHHHHHHHHHcCCCE-EEEcCCCccccHHHHHHHHHhc
Confidence            357999999876533457999999999999975 55453  345566666666654

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A*

Probab=94.20  E-value=0.25  Score=42.86  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=27.8

Q ss_pred             ceEeeccCCCCCC-----CCCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          24 VLIDVGANLTNRK-----FGRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        24 ~~iDtH~HL~~~~-----~~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      .+||+|+|+....     ..+++......+...||..++..+.
T Consensus        56 GlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~~   98 (559)
T 2fty_A           56 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFST   98 (559)
T ss_dssp             CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEeeccCcCccccccCCCHHHHHHHHHHHHhCcEEEEEECcC
Confidence            4899999998642     2345666667788899998777654

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli}

Probab=94.13  E-value=0.24  Score=41.93  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=24.9

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||+|+|+....  ..++.....+.+...|+..++...
T Consensus        74 G~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~Tt~~~~~  112 (473)
T 3e74_A           74 GMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMP  112 (473)
T ss_dssp             CEEEEEECC---------CHHHHHHHHHHTTEEEEEECC
T ss_pred             CEEEEecccCCCCCCcHHHHHHHHHHHHhCCEEEEEcCc
Confidence            4999999997532  235667777888899998887765

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}

Probab=94.07  E-value=0.0017  Score=53.51  Aligned_cols=135  Identities=12%  Similarity=0.094  Sum_probs=69.6

Q ss_pred             ceEeeccCCCCCCCCCCH-------------------------HHHHHHHHhcCCCEEEEeC-CC-------------hh
Q psy4673          24 VLIDVGANLTNRKFGRDL-------------------------ESVVQRAKDSGVQKIIAIG-SS-------------LK   64 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~-------------------------~~vl~~a~~~gv~~~i~v~-~~-------------~~   64 (171)
                      .+||+|+|+....+....                         ...+.++...||..++... +.             ..
T Consensus        58 g~~d~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~  137 (396)
T 3ooq_A           58 GFVDAHSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSI  137 (396)
T ss_dssp             CEEEEEECTTTSCTTSCGGGCCSCCTTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCS
T ss_pred             CEEecccccCccccCccccccccccccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCC
Confidence            489999999853221111                         1467889999998776641 11             01


Q ss_pred             hHHHHHHHHHhcCCcEEEEeeeCCCCC-------CCCCHHHHHHHHHHhcc------CCeEE---Ee-cCCCCCCcHHHH
Q psy4673          65 SSKEALRLARIYPGMVYSTAGIHPHEA-------KSWDEDYIDQLRDLVSN------TGNST---MN-RYNSSQWITEIK  127 (171)
Q Consensus        65 ~~~~~~~l~~~~~~~v~~~~GiHP~~~-------~~~~~~~~~~l~~~l~~------~~vva---IG-Dy~~~~~~~~~Q  127 (171)
                      ......  ..... -+++++|.||...       +.......+.+++.+..      ....+   .| ++.     .+.+
T Consensus       138 ~~~~~~--~~~~~-~i~~~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~  209 (396)
T 3ooq_A          138 IVEECI--VKDPA-GLKMAFGENPKRVYGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTE-----TDLK  209 (396)
T ss_dssp             SHHHHE--EEEEE-EEEEECSHHHHHHHHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----CCHH
T ss_pred             CHHHce--ecCCc-EEEEEcCCCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC-----cChh
Confidence            122111  11112 2688899998542       11111223444444321      11111   13 322     2356


Q ss_pred             HHHHHHHHHHhhH-HHHhhhhh--HhHh----hhcCc-eEEEecCCC
Q psy4673         128 QTLFTTFVDITAL-CEFCQKNF--SRKE----HLNRH-LWVHKDSSM  166 (171)
Q Consensus       128 ~~~F~~ql~lA~~-~iH~r~a~--~~~~----~~~~p-~iiH~fsg~  166 (171)
                      .+.|.+.++.-.. .+|+..+.  .+.+    +.+.+ .|.|++.+.
T Consensus       210 ~e~l~~~~~~~~~v~iHa~~~~~i~~~~~~~~~~g~~~~i~H~~~~~  256 (396)
T 3ooq_A          210 MEVGEMVLRKKIPARMHAHRADDILTAIRIAEEFGFNLVIEHGTEAY  256 (396)
T ss_dssp             HHHHHHHHTTSSCEEEEECSHHHHHHHHHHHHHHTCCEEEEECTTGG
T ss_pred             HHHHHHHHcCCCcEEEEECchhHHHHHHHHHHHcCCCEEEecCchHH
Confidence            6677666532222 78998875  2333    35555 788998765

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A

Probab=93.97  E-value=0.63  Score=37.83  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=19.8

Q ss_pred             HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEee
Q psy4673          46 QRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG   85 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~G   85 (171)
                      .++...|+..++..+...+   ..++..++.+-+++.+.|
T Consensus       101 ~~~l~~GvTtv~d~~~~~~---~~~~~~~~~g~r~~~~~~  137 (406)
T 1p1m_A          101 MEMARHGIAGFVDMYFHEE---WIAKAVRDFGMRALLTRG  137 (406)
T ss_dssp             HHHHTTTEEEEEEEESSHH---HHHHHHHHHCCEEEEEEE
T ss_pred             HHHHhcCcEEEEechhCHH---HHHHHHHHcCCEEEEEcc
Confidence            4456789988777665433   333333444434444333

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*

Probab=93.95  E-value=0.89  Score=36.80  Aligned_cols=33  Identities=15%  Similarity=-0.032  Sum_probs=22.0

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||.|+|+.. ..  ...+. ..|...|+..++...
T Consensus        11 G~ID~HvH~~~-g~--~~~e~-~aa~~gGvTtvv~mp   43 (347)
T 2z26_A           11 RPDDWHLHLRD-GD--MLKTV-VPYTSEIYGRAIVMP   43 (347)
T ss_dssp             CCCEEEECCCS-HH--HHHHH-HHHHHTTCSEEEECC
T ss_pred             CcceeeecCCC-CC--chhhH-HHHHhCCCCEEEECC
Confidence            48999999986 21  11222 556778999877654

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A*

Probab=92.95  E-value=0.18  Score=42.60  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=19.2

Q ss_pred             ceEeeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEE
Q psy4673          24 VLIDVGANLTNRKFG-RDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~   58 (171)
                      .|||+|+|++...+. ...    ..+...|+..++.
T Consensus        61 G~iD~H~H~~~~~~~~~~~----~~~~~~G~Tt~~~   92 (480)
T 3gip_A           61 GFIDVHGHDDLMFVEKPDL----RWKTSQGITTVVV   92 (480)
T ss_dssp             CEEESSCCCTTHHHHSTTC----HHHHTTTEEEEEE
T ss_pred             CEEeccccccccccCChhH----HHHhcCCeeEEEe
Confidence            499999998753211 111    2345678887765

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A

Probab=92.92  E-value=1.5  Score=36.93  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=20.4

Q ss_pred             HHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCC
Q psy4673          45 VQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPG   78 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~   78 (171)
                      +.++...|+..++..++ .++....+.+.+.+..-
T Consensus       150 ~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~  184 (476)
T 4aql_A          150 VRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQ  184 (476)
T ss_dssp             HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCC
Confidence            35678899987765444 45554445555555543

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16

Probab=92.83  E-value=0.86  Score=37.39  Aligned_cols=23  Identities=9%  Similarity=-0.114  Sum_probs=16.0

Q ss_pred             HHHHHHhcCCCEEEEeCCChhhH
Q psy4673          44 VVQRAKDSGVQKIIAIGSSLKSS   66 (171)
Q Consensus        44 vl~~a~~~gv~~~i~v~~~~~~~   66 (171)
                      .+..+...||..++..+..++.+
T Consensus       137 ~~~~~l~~GvTtv~d~~~~~~~~  159 (420)
T 2imr_A          137 GADTLTRLGAGGVGDIVWAPEVM  159 (420)
T ss_dssp             HHHHHHHTTCCCEEEEECSHHHH
T ss_pred             HHHHHHhcCcEEEEEccCCHHHH
Confidence            34567889999888777555433

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A

Probab=92.77  E-value=2.2  Score=34.81  Aligned_cols=92  Identities=8%  Similarity=-0.034  Sum_probs=39.6

Q ss_pred             HHHHhcCCCEEEEeC-C-Ch--hhHHHHHHHHHhcCCcEEE-EeeeCCCCCCCCCHHHHHHHHHHhcc-CCeEEEecCCC
Q psy4673          46 QRAKDSGVQKIIAIG-S-SL--KSSKEALRLARIYPGMVYS-TAGIHPHEAKSWDEDYIDQLRDLVSN-TGNSTMNRYNS  119 (171)
Q Consensus        46 ~~a~~~gv~~~i~v~-~-~~--~~~~~~~~l~~~~~~~v~~-~~GiHP~~~~~~~~~~~~~l~~~l~~-~~vvaIGDy~~  119 (171)
                      .++...||..+...+ + ++  ..++...+..+.....+.. ..++.+..... .+...+.+++++.. ..+++....  
T Consensus       113 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~--  189 (430)
T 1ra0_A          113 KWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILS-YPNGEALLEEALRLGADVVGAIPH--  189 (430)
T ss_dssp             HHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHHHTTTCEEEEEEECTTCSSS-STTHHHHHHHHHHTTCSEECCCGG--
T ss_pred             HHHHhcCccEEeeccccCChHHHHHHHHHHHHHhhhhhEEEEEEecCCccccc-CchHHHHHHHHHHhCCCeEeeeec--
Confidence            445688998876644 2 33  2455555544433222221 22332211101 11233345555443 233321121  


Q ss_pred             CCCcHHHHHHHHHHHHHHhhH
Q psy4673         120 SQWITEIKQTLFTTFVDITAL  140 (171)
Q Consensus       120 ~~~~~~~Q~~~F~~ql~lA~~  140 (171)
                      .......-.+.|.+-+++|.+
T Consensus       190 ~~~~~~~~~~~l~~~~~~A~~  210 (430)
T 1ra0_A          190 FEFTREYGVESLHKTFALAQK  210 (430)
T ss_dssp             GSSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHH
Confidence            111112344567777888884

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}

Probab=92.49  E-value=0.3  Score=40.17  Aligned_cols=37  Identities=14%  Similarity=-0.140  Sum_probs=29.5

Q ss_pred             CCccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEE
Q psy4673          20 FDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKI   56 (171)
Q Consensus        20 ~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~   56 (171)
                      ...|+++|.|||-....-...+++++++|.+.|+..+
T Consensus        15 ~~~~~~~DlH~Ht~~SDg~~~~~elv~~A~~~Gl~~i   51 (343)
T 3e38_A           15 GYTTLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAI   51 (343)
T ss_dssp             TCEEEEEECCBCCTTTTCSBCHHHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHcCCCEE
Confidence            4457889999998764334578999999999999853

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18

Probab=92.48  E-value=1.3  Score=36.08  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=24.9

Q ss_pred             ceEeeccCCCCCC-------CCCCHHH-------HHHHHHhcCCCEEEEeCC
Q psy4673          24 VLIDVGANLTNRK-------FGRDLES-------VVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        24 ~~iDtH~HL~~~~-------~~~d~~~-------vl~~a~~~gv~~~i~v~~   61 (171)
                      .|||+|+|+....       +..+.+.       .+..+...||..++..++
T Consensus        64 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  115 (418)
T 2qs8_A           64 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGD  115 (418)
T ss_dssp             CEEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCC
T ss_pred             CeeeeeeccccCCCCCchhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            4899999997532       1112232       456678899988777654

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*

Probab=92.36  E-value=1.5  Score=35.43  Aligned_cols=40  Identities=8%  Similarity=-0.111  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhhH-----HHHhhhhh--HhHhhhcCceEEEecCCCcc
Q psy4673         129 TLFTTFVDITAL-----CEFCQKNF--SRKEHLNRHLWVHKDSSMMK  168 (171)
Q Consensus       129 ~~F~~ql~lA~~-----~iH~r~a~--~~~~~~~~p~iiH~fsg~~~  168 (171)
                      +.|.+.+++|.+     .+|+..+.  +.+++.+...|.|++..+.+
T Consensus       206 ~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g~~~i~H~~~~~~~  252 (408)
T 3be7_A          206 EEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDE  252 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSEEEECTTCCHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCCCHH
Confidence            347778899986     57776542  33445556677777766543

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1

Probab=92.09  E-value=0.21  Score=38.81  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      ..+++|.|||.....-..++++++++|.+.|++.+.+
T Consensus        18 ~~~~~DlH~Ht~~SDg~~t~ee~v~~A~~~Gl~~i~i   54 (255)
T 2anu_A           18 EWLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSI   54 (255)
T ss_dssp             EEEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEeecCCCcCCCCCHHHHHHHHHHCCCCEEEE
Confidence            3457999999976433457899999999999986433

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}

Probab=92.05  E-value=0.46  Score=37.78  Aligned_cols=35  Identities=14%  Similarity=0.060  Sum_probs=26.8

Q ss_pred             ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEE
Q psy4673          24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      |++|.|+|.....-  ...+++++++|.+.|++.+.+
T Consensus         1 m~~D~H~Ht~~s~~~~~~~~~e~~~~A~~~G~~~i~~   37 (283)
T 3dcp_A            1 MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSI   37 (283)
T ss_dssp             CCEEEEECCTTCTTSCCCCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEeeCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence            47899999965432  246899999999999986543

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A*

Probab=91.95  E-value=0.55  Score=39.04  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=30.3

Q ss_pred             ceEeeccCCCC----C--CCCCCHHHHHHHHHhcCCCEEEEe--CCChhhHHHHHHH
Q psy4673          24 VLIDVGANLTN----R--KFGRDLESVVQRAKDSGVQKIIAI--GSSLKSSKEALRL   72 (171)
Q Consensus        24 ~~iDtH~HL~~----~--~~~~d~~~vl~~a~~~gv~~~i~v--~~~~~~~~~~~~l   72 (171)
                      .|||+|+|...    .  ...+++....+.+...|+..++..  +..++...++++.
T Consensus        57 GfID~HvHg~~G~~~~d~~~~e~l~~~~~a~~~~GvTt~l~t~~T~~~e~l~~al~~  113 (381)
T 3iv8_A           57 GFIDLQLNGCGGVMFNDEITAETIDTMHKANLKSGCTSFLPTLITSSDENMRQAIAA  113 (381)
T ss_dssp             CEEEEEECEETTEETTTSCSHHHHHHHHHHHHHTTEEEEEEEEESCCHHHHHHHHHH
T ss_pred             CeEeeeecccCCCCCCCCCCHHHHHHHHHHHHhCCccccccccCCCCHHHHHHHHHH
Confidence            48999999531    1  112345666677788899876543  4456666655543

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens}

Probab=91.65  E-value=0.078  Score=43.63  Aligned_cols=45  Identities=11%  Similarity=0.130  Sum_probs=26.2

Q ss_pred             ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHH
Q psy4673          24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALR   71 (171)
Q Consensus        24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~   71 (171)
                      .|||+|+|+....  +..+.+   ..+...||..++..++ .+.+.....+
T Consensus        72 GlID~H~H~~~~~~~~~~~~~---~~~l~~GvTtv~d~~~~~~~~~~~~~~  119 (417)
T 2ogj_A           72 GWVDLHVHIWHGGTDISIRPS---ECGAERGVTTLVDAGSAGEANFHGFRE  119 (417)
T ss_dssp             CEEEEEECCCBTTBSSCCCGG---GTSGGGTEEEEEEESSCCSTTHHHHHH
T ss_pred             CeeeccccccccccccCCCHH---HHHHhCCcCeEEeCCcCCCcCHHHHHH
Confidence            4899999997532  111211   2456789988776543 3444444333

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=91.36  E-value=0.61  Score=36.66  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=24.6

Q ss_pred             eEeeccCCCCC--CCCCCHHH---HHHHHHhcCCCEEEE
Q psy4673          25 LIDVGANLTNR--KFGRDLES---VVQRAKDSGVQKIIA   58 (171)
Q Consensus        25 ~iDtH~HL~~~--~~~~d~~~---vl~~a~~~gv~~~i~   58 (171)
                      +||.|||....  .-..+.++   +++.|.+.|++.+++
T Consensus         1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~   39 (262)
T 3qy7_A            1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIA   39 (262)
T ss_dssp             CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            58999999642  11235664   899999999987544

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri}

Probab=91.32  E-value=1.4  Score=35.39  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             ceEeeccCCCCCCCCCCH--HHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRKFGRDL--ESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~--~~vl~~a~~~gv~~~i~v~   60 (171)
                      .|||+|+|+....+.+..  ......+...||..++..+
T Consensus        62 GlID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~  100 (386)
T 2vun_A           62 GLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG  100 (386)
T ss_dssp             CEEEEEECCCSTTEEGGGTEESHHHHHHTTTEEEEEECC
T ss_pred             ceeeccccccCCCcChhHHHHHHHHHHHhCCceEEEecc
Confidence            499999999743221111  1246777889999887754

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6

Probab=90.32  E-value=1.1  Score=36.80  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=26.5

Q ss_pred             ceEeeccCCCC-CC---CCCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          24 VLIDVGANLTN-RK---FGRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        24 ~~iDtH~HL~~-~~---~~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      .|||+|+|+.. ..   ..++.....+.+...||..++..+.
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTtv~~~~~   93 (457)
T 1nfg_A           52 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQ   93 (457)
T ss_dssp             CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceEeeccccccCcCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Confidence            49999999973 11   2346665667777899988776543

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17

Probab=90.21  E-value=3.2  Score=34.26  Aligned_cols=38  Identities=11%  Similarity=-0.052  Sum_probs=21.4

Q ss_pred             HHHHHHHHHhhH-----HHHhhhh--hHhHhhhcCceEEEecCCC
Q psy4673         129 TLFTTFVDITAL-----CEFCQKN--FSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       129 ~~F~~ql~lA~~-----~iH~r~a--~~~~~~~~~p~iiH~fsg~  166 (171)
                      +.+.+.++.|.+     .+|+...  ....++.+...+.|+...+
T Consensus       227 ~~l~~~~~~a~~~g~~v~~H~~~~~~i~~~~~~G~~~i~H~~~~~  271 (458)
T 2p9b_A          227 EQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAGVDTIEHGSVLD  271 (458)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCC
Confidence            457777888885     4566432  2223344555666665544

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*

Probab=89.85  E-value=0.86  Score=39.79  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=28.1

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      +++|.|||.....-..++++++++|.+.|+..+.+
T Consensus       337 ~~~DlH~HT~~SDG~~t~ee~v~~A~~~G~~~iai  371 (575)
T 3b0x_A          337 VKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAV  371 (575)
T ss_dssp             CCEEEEECCTTTTCSCCHHHHHHHHHHTTCSEEEE
T ss_pred             cCeeEeecCCccCCCCCHHHHHHHHHHCCCCEEEE
Confidence            58999999876433357899999999999987544

>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}

Probab=89.65  E-value=2.2  Score=34.98  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      .+||.|+|+.. .  ....+-+ .|...|+..++...
T Consensus        29 G~ID~HvHlre-G--~~~~e~~-aA~aGG~Ttvi~mP   61 (359)
T 3pnu_A           29 NPLDMHLHLRD-N--QMLELIA-PLSARDFCAAVIMP   61 (359)
T ss_dssp             SCEEEEECCCS-H--HHHHHHH-HHHHTTCSEEEECC
T ss_pred             CcEEccccCCC-C--CcchhHH-HHHhCCCcEEEECC
Confidence            38999999986 2  1222223 44456888877654

>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0

Probab=89.57  E-value=0.2  Score=42.97  Aligned_cols=58  Identities=17%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             CCCccceEeeccCCCC------CCCCCCHHHHH--------HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC
Q psy4673          19 CFDNYVLIDVGANLTN------RKFGRDLESVV--------QRAKDSGVQKIIAIGSSLKSSKEALRLARIYP   77 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~------~~~~~d~~~vl--------~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~   77 (171)
                      --+.|+|||-||||+.      ..| +++.++.        +.++.+||.-=.++|.+..+.++-..+++..|
T Consensus        26 ~a~~lPIiDyH~Hl~P~~iaen~~F-~nit~lwl~gDHYkwR~mrs~Gv~e~~itG~~a~~~ekf~~~A~t~p   97 (473)
T 3iac_A           26 YAAPMPIYDFHCHLSPQEIADDRRF-DNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVP   97 (473)
T ss_dssp             TTTTSCEEECSCCCCHHHHHHTCCC-SCHHHHHHSSCSHHHHHHHHTTCCGGGTTCTTSCHHHHHHHHHHHGG
T ss_pred             HHhcCCEECCCCCCCHHHhccCCCC-CCHHHHhccCchHHHHHHHHcCCCHHHccCCCCChHHHHHHHHHHHH
Confidence            3567999999999985      234 4565553        56889999732224545556666667777665

>2q01_A Uronate isomerase; structural genomics, protein structure initiative NEW YORK SGX research center for structural genomics, nysgx; 2.34A {Caulobacter crescentus}

Probab=87.62  E-value=0.27  Score=42.50  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=25.4

Q ss_pred             CCCccceEeeccCCCCCCC-----CCCHHHH--------HHHHHhcCCC
Q psy4673          19 CFDNYVLIDVGANLTNRKF-----GRDLESV--------VQRAKDSGVQ   54 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~~~~~-----~~d~~~v--------l~~a~~~gv~   54 (171)
                      --+.|++||.||||+...+     ..++.++        .+.++.+||.
T Consensus        31 ~a~~~PIiDyH~Hl~p~~iaen~~f~~i~elwl~gdHYkwr~mRa~Gv~   79 (497)
T 2q01_A           31 LVKDLPIISPHGHTDPSWFATNAPFQDATDLLLAPDHYLFRMLYSQGVS   79 (497)
T ss_dssp             TTTTSCEEECSCCCCTHHHHHCCCCCCHHHHTTSSCHHHHHHHHTTTCC
T ss_pred             HHhCCCeecCccCCCHHHHhhcCCCCCHHHHhccCcHHHHHHHHHcCCC
Confidence            3577999999999996322     1345555        3668899985

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=87.11  E-value=0.53  Score=36.28  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             eEeeccCCCCC--CCCCCHH---HHHHHHHhcCCCEEE
Q psy4673          25 LIDVGANLTNR--KFGRDLE---SVVQRAKDSGVQKII   57 (171)
Q Consensus        25 ~iDtH~HL~~~--~~~~d~~---~vl~~a~~~gv~~~i   57 (171)
                      ++|.|||....  .=..+.+   +++++|.+.|++.++
T Consensus         5 m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~   42 (247)
T 2wje_A            5 MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIV   42 (247)
T ss_dssp             EEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence            69999999532  1123444   799999999997543

>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8

Probab=86.96  E-value=0.15  Score=43.70  Aligned_cols=55  Identities=22%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             CccceEeeccCCCCC------CCCCCHHH--------HHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC
Q psy4673          21 DNYVLIDVGANLTNR------KFGRDLES--------VVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYP   77 (171)
Q Consensus        21 ~~~~~iDtH~HL~~~------~~~~d~~~--------vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~   77 (171)
                      +.|++||-|||++..      .| +++-+        ..+.++.+||.-=.+.| +..+.++-..+++.+|
T Consensus        34 ~~~PIiD~HcHl~p~~i~~~~~F-~ni~e~wl~gDHYkwr~mRa~Gv~e~~itg-~~~~~ekf~~~a~~~~  102 (463)
T 1j5s_A           34 KDLPIVDPHNHLDAKDIVENKPW-NDIWEVEGATDHYVWELMRRCGVSEEYITG-SRSNKEKWLALAKVFP  102 (463)
T ss_dssp             TTSCEEESCCCCCHHHHHHTCCC-SCHHHHHTTTCHHHHHHHHHTTCCGGGTTS-SSCHHHHHHHHHHHGG
T ss_pred             ccCCeecCccCCCHHHhccccCc-ccHHHHhccCchHHHHHHhhcCCChhhhcC-CCCHHHHHHHHHhhhH
Confidence            678999999999853      24 34433        44667888984211222 4445555566666554

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}

Probab=86.48  E-value=3.7  Score=33.85  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=17.6

Q ss_pred             HHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673         130 LFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus       130 ~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      .+++-+++|+             +.++|+.+|.-.
T Consensus       188 ~l~~~~~~A~-------------~~g~~v~~H~~E  209 (427)
T 3v7p_A          188 LAKRALDIAK-------------KYGSLVSVHFME  209 (427)
T ss_dssp             HHHHHHHHHH-------------HHTCCEEEEESC
T ss_pred             HHHHHHHHHH-------------hCCCCEEEEeCC
Confidence            4777789999             888888888743

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*

Probab=85.38  E-value=13  Score=29.95  Aligned_cols=11  Identities=36%  Similarity=0.308  Sum_probs=9.5

Q ss_pred             ceEeeccCCCC
Q psy4673          24 VLIDVGANLTN   34 (171)
Q Consensus        24 ~~iDtH~HL~~   34 (171)
                      .|||+|+|+..
T Consensus        67 G~ID~H~H~~~   77 (416)
T 2q09_A           67 GLIDCHTHLIF   77 (416)
T ss_dssp             CEEEEEECCCC
T ss_pred             cccccccCcch
Confidence            49999999975

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}

Probab=83.30  E-value=1.3  Score=38.79  Aligned_cols=35  Identities=9%  Similarity=-0.012  Sum_probs=27.8

Q ss_pred             ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673          24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA   58 (171)
Q Consensus        24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~   58 (171)
                      +++|.|||.....=...+++++++|.+.|++.+.+
T Consensus       327 ~~~DlH~HT~~SDG~~t~eemv~~A~~~Gl~~Iai  361 (578)
T 2w9m_A          327 LRGMIHTHSTWSDGGASIREMAEATLTLGHEFLGT  361 (578)
T ss_dssp             CCEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEE
T ss_pred             hceEEEecCCccCCCCCHHHHHHHHHHCCCeEEEE
Confidence            47999999876533457899999999999986443

>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*

Probab=81.97  E-value=0.35  Score=41.07  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CccceEeeccCCCCCCCC----CCHHHHH------HH-HHhcCCC
Q psy4673          21 DNYVLIDVGANLTNRKFG----RDLESVV------QR-AKDSGVQ   54 (171)
Q Consensus        21 ~~~~~iDtH~HL~~~~~~----~d~~~vl------~~-a~~~gv~   54 (171)
                      +.|++||.||||+...+.    .++.+++      .| ++.+||.
T Consensus        20 ~~~PIiDyH~HL~P~~iae~~f~ni~elwgdHYkw~r~mRa~Gv~   64 (437)
T 2qee_A           20 NNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVS   64 (437)
T ss_dssp             HHSCEEECSCSCCCGGGCTTSBCSHHHHHTSHHHHHHHHTTCCSC
T ss_pred             hcCCeeccccCCCHHHHHhcccCCHHhccccHHHHHHHHHHcCCC
Confidence            568999999999975533    4566662      24 7778875

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=81.43  E-value=18  Score=28.61  Aligned_cols=101  Identities=15%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeE
Q psy4673          41 LESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS  112 (171)
Q Consensus        41 ~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vv  112 (171)
                      ...+++..-+.||.+++..|++       .++..++++.+.+. .+++-..+|+=-..    +.+.++..+. +++-.+-
T Consensus        35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~----t~~ai~la~~-A~~~Gad  109 (301)
T 1xky_A           35 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNN----THASIDLTKK-ATEVGVD  109 (301)
T ss_dssp             HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSC----HHHHHHHHHH-HHHTTCS
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCC----HHHHHHHHHH-HHhcCCC
Confidence            5677888888999998888874       45556666544322 22222224432221    2234443333 3333333


Q ss_pred             E--Ee-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673         113 T--MN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus       113 a--IG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                      |  +- .||+.. +   |..++..+-++|.             ..++|+++..+
T Consensus       110 avlv~~P~y~~~-s---~~~l~~~f~~va~-------------a~~lPiilYn~  146 (301)
T 1xky_A          110 AVMLVAPYYNKP-S---QEGMYQHFKAIAE-------------STPLPVMLYNV  146 (301)
T ss_dssp             EEEEECCCSSCC-C---HHHHHHHHHHHHH-------------TCSSCEEEEEC
T ss_pred             EEEEcCCCCCCC-C---HHHHHHHHHHHHH-------------hcCCCEEEEeC
Confidence            3  33 766643 2   5667777778888             77889888764

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=80.56  E-value=18  Score=28.51  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHh-cCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673          40 DLESVVQRAKD-SGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG  110 (171)
Q Consensus        40 d~~~vl~~a~~-~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~  110 (171)
                      ....+++..-+ .||.+++..|++       .++..++++.+.+ ..+++-..+|+=...    ..+.++..+. +++-.
T Consensus        25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~----t~~ai~la~~-a~~~G   99 (293)
T 1f6k_A           25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN----LKEAVELGKY-ATELG   99 (293)
T ss_dssp             HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSC----HHHHHHHHHH-HHHHT
T ss_pred             HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCC----HHHHHHHHHH-HHhcC
Confidence            36677888888 999998888864       4556666665432 223333345543321    2234443333 33322


Q ss_pred             --eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673         111 --NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD  163 (171)
Q Consensus       111 --vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f  163 (171)
                        .+-+- .||+.. +   |..++..+-++|.             ..++|+++..+
T Consensus       100 adavlv~~P~y~~~-~---~~~l~~~f~~va~-------------a~~lPiilYn~  138 (293)
T 1f6k_A          100 YDCLSAVTPFYYKF-S---FPEIKHYYDTIIA-------------ETGSNMIVYSI  138 (293)
T ss_dssp             CSEEEEECCCSSCC-C---HHHHHHHHHHHHH-------------HHCCCEEEEEC
T ss_pred             CCEEEECCCCCCCC-C---HHHHHHHHHHHHH-------------hCCCCEEEEEC
Confidence              22233 666643 2   6667777777888             77889888763

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=80.02  E-value=13  Score=29.61  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe
Q psy4673          40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN  111 (171)
Q Consensus        40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v  111 (171)
                      ....+++..-+.||.+++..|++       .++..++++.+.+ ..+++-..+|+=- ..    .+.++..+ .+++-.+
T Consensus        34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st----~~ai~la~-~A~~~Ga  107 (314)
T 3d0c_A           34 GLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SV----DTAIELGK-SAIDSGA  107 (314)
T ss_dssp             HHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SH----HHHHHHHH-HHHHTTC
T ss_pred             HHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CH----HHHHHHHH-HHHHcCC
Confidence            36677888888999998877764       4556666654432 2233333345422 21    23444333 3343333


Q ss_pred             EE--Ee-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         112 ST--MN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       112 va--IG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      -|  +- .||+.. +   |..++..+-++|.             ..++|+++..++|
T Consensus       108 davlv~~P~y~~~-s---~~~l~~~f~~va~-------------a~~lPiilYn~tg  147 (314)
T 3d0c_A          108 DCVMIHQPVHPYI-T---DAGAVEYYRNIIE-------------ALDAPSIIYFKDA  147 (314)
T ss_dssp             SEEEECCCCCSCC-C---HHHHHHHHHHHHH-------------HSSSCEEEEECCT
T ss_pred             CEEEECCCCCCCC-C---HHHHHHHHHHHHH-------------hCCCCEEEEeCCC
Confidence            33  33 666643 2   6667777778888             8889998877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1xwya1	260	c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {	8e-15
d1zzma1	259	c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV	6e-13
d1j6oa_	260	c.1.9.12 (A:) Hypothetical protein TM0667 {Thermot	3e-11
d1i0da_	331	c.1.9.3 (A:) Phosphotriesterase (parathion hydrola	3e-09
d1yixa1	265	c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH	9e-08
d1bf6a_	291	c.1.9.3 (A:) Phosphotriesterase homology protein {	1e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	7e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	7e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	8e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	8e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.002
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.002
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

 Score = 67.7 bits (164), Expect = 8e-15
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
           + D+G NLT+ +F +D + VV  A D+GV  ++  G++L+ S++A +LAR Y    +STA
Sbjct: 1   MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYS-SCWSTA 59

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQW 122
           G+HPH++  W     + + +L +      +        
Sbjct: 60  GVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFN 97

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Length = 259

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

 Score = 62.4 bits (150), Expect = 6e-13
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 8/143 (5%)

Query: 25  LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
            ID   +     F  D E+ +QRA  +GV KII   +  ++    L LA  Y   +Y+  
Sbjct: 5   FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQ-PLYAAL 63

Query: 85  GIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFC 144
           G+HP   +   +  ++QL+  +         R      + EI   LF             
Sbjct: 64  GLHPGMLEKHSDVSLEQLQQAL-------ERRPAKVVAVGEIGLDLFGDDPQFERQQWLL 116

Query: 145 QKNFSRKEHLNRHLWVHKDSSMM 167
            +     +  +  + +H   +  
Sbjct: 117 DEQLKLAKRYDLPVILHSRRTHD 139

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 22  NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
           ++ ++D  A+L   +F  D  +V+   +++ ++ ++ +G +L+ SK++L L++    +  
Sbjct: 2   HHHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFC 61

Query: 82  STAGIHPHEAKSWDEDYIDQ 101
            + G+HPH+AK   ED+I+ 
Sbjct: 62  -SVGVHPHDAKEVPEDFIEH 80

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

 Score = 52.8 bits (125), Expect = 3e-09
 Identities = 14/158 (8%), Positives = 41/158 (25%), Gaps = 4/158 (2%)

Query: 16  LTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII--AIGSSLKSSKEALRLA 73
           +      ++        + +         ++RA+ +GV+ I+  +     +       ++
Sbjct: 24  ICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVS 83

Query: 74  RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTT 133
           R     + +  G+      S     +++L           +        I ++  T   T
Sbjct: 84  RAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKAT 143

Query: 134 FVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKELH 171
                 L        S    +             ++  
Sbjct: 144 PFQELVLKA--AARASLATGVPVTTHTAASQRDGEQQA 179

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} Length = 265

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

 Score = 48.1 bits (113), Expect = 9e-08
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 15/140 (10%)

Query: 25  LIDVGANLTNRKF---GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
           L+D   +L    +    +D++ V+ +A    V+  +A+ ++L S      L       V 
Sbjct: 3   LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERD-NVV 61

Query: 82  STAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALC 141
            + G+HP       +    +            +        + E     + T        
Sbjct: 62  FSCGVHPLNQNDPYDVEDLR-----------RLAAEEGVVALGETGLDYYYTPETKVRQQ 110

Query: 142 EFCQKNFSRKEHLNRHLWVH 161
           E    +      LN+ + VH
Sbjct: 111 ESFIHHIQIGRELNKPVIVH 130

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 12/126 (9%), Positives = 33/126 (26%), Gaps = 6/126 (4%)

Query: 40  DLESVVQRAKDSGVQKII--AIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS--WD 95
            +   +      GV+ +I        ++++  L + R     V +  G +          
Sbjct: 34  FICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVA 93

Query: 96  EDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLN 155
              + +L   + +     ++       I  I +   +         +             
Sbjct: 94  TRSVQELAQEMVDEIEQGIDGTELKAGI--IAEIGTSEGKITPLEEKVFIAAALAHNQTG 151

Query: 156 RHLWVH 161
           R +  H
Sbjct: 152 RPISTH 157

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           CE C + F+R+EHL RH   H
Sbjct: 5   CEVCTRAFARQEHLKRHYRSH 25

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (77), Expect = 7e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C +NFSR +HL  H+  H
Sbjct: 6   CRICMRNFSRSDHLTTHIRTH 26

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 7e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSS 165
           C  C K F +K+ L+ H   + D +
Sbjct: 11  CSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 8e-04
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C K FSR   L +H  VH
Sbjct: 10  CVECGKAFSRSSILVQHQRVH 30

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 8e-04
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C K F R +HL++H+  H
Sbjct: 5   CPECPKRFMRSDHLSKHIKTH 25

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
           C  C K F  K HL  H+ +H
Sbjct: 33  CGVCGKKFKMKHHLVGHMKIH 53

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.002
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 141 CEFCQKNFSRKEHLNRHLWVHKDS 164
           C  C   F+ K +  RHL VH D+
Sbjct: 10  CRICLSAFTTKANCARHLKVHTDT 33

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 142 EFCQKNFSRKEHLNRHLWVH 161
           + C K F++  +L  H+  H
Sbjct: 8   DGCNKKFAQSTNLKSHILTH 27

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.5 bits (72), Expect = 0.004
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 141 CEFCQKNFSRKEHLNRHL 158
           C+ C K FSR +HLN H+
Sbjct: 8   CQSCGKGFSRPDHLNGHI 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1j6oa_	260	Hypothetical protein TM0667 {Thermotoga maritima [	100.0
d1xwya1	260	Deoxyribonuclease TatD (MttC) {Escherichia coli [T	100.0
d1yixa1	265	Putative deoxyribonuclease YcfH {Escherichia coli	100.0
d1zzma1	259	Putative deoxyribonuclease YjjV {Escherichia coli	100.0
d1bf6a_	291	Phosphotriesterase homology protein {Escherichia c	99.78
d1i0da_	331	Phosphotriesterase (parathion hydrolase, PTE) {Pse	99.35
d2gwga1	342	4-oxalomesaconate hydratase LigJ {Rhodopseudomonas	98.47
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	98.24
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	98.15
d2ffia1	271	Putative 2-pyrone-4,6-dicarboxylic acid hydrolase	98.07
d2dvta1	325	Thermophilic reversible gamma-resorcylate decarbox	97.75
d1kcxa2	334	Dihydropyrimidinase related protein-1 {Mouse (Mus	97.47
d1ynya2	332	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	97.09
d2ftwa2	334	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	97.02
d1gkpa2	335	D-hydantoinase {Thermus sp. [TaxId: 275]}	96.86
d1ra0a2	320	Cytosine deaminase catalytic domain {Escherichia c	96.76
d1nfga2	330	D-hydantoinase {Burkholderia pickettii [TaxId: 329	95.98
d2fvka2	384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	95.31
d1onwa2	284	Isoaspartyl dipeptidase, catalytic domain {Escheri	95.13
d2icsa2	267	Putative adenine deaminase EF0837 {Enterococcus fa	95.12
d1gkra2	325	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	94.39
d1xrta2	310	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	94.35
d1p1ma2	281	Hypothetical protein TM0936, probable catalytic do	93.38
d2r8ca2	311	Uncharacterized protein EAJ56179 {Unidentified org	91.85
d1m7ja3	358	N-acyl-D-aminoacid amidohydrolase, catalytic domai	91.7
d1yrra2	297	N-acetylglucosamine-6-phosphate deacetylase, NagA,	91.47
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	90.88
d2uz9a2	313	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	90.77
d1o12a2	288	N-acetylglucosamine-6-phosphate deacetylase, NagA,	90.43
d2vhla2	301	N-acetylglucosamine-6-phosphate deacetylase, NagA,	90.06
d3be7a2	303	Zn-dependent arginine carboxypeptidase {Unidentifi	88.63
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	88.22
d2imra2	308	Hypothetical protein DR0824 {Deinococcus radiodura	88.18
d2qs8a2	310	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	87.46
d2anua1	229	Hypothetical protein TM0559 {Thermotoga maritima [	86.62
d2paja2	336	Hypothetical protein GOS_1943094 {Environmental sa	85.96
d2i9ua2	310	Guanine deaminase {Clostridium acetobutylicum [Tax	85.57
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	83.64

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.2e-40  Score=261.72  Aligned_cols=147  Identities=19%  Similarity=0.380  Sum_probs=135.1

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHH
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL  102 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l  102 (171)
                      .|+||+||||+...|.+|+++++++|+++||.+++++|+++++|.+++++++++|. +|+|+|+|||++.++.+++++.+
T Consensus         3 ~~lIDsH~HLd~~~~~~d~~~vi~~a~~~gV~~ii~~~~~~~~~~~~~~la~~~~~-i~~a~GiHP~~~~~~~~~~~~~l   81 (260)
T d1j6oa_           3 HHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-IFCSVGVHPHDAKEVPEDFIEHL   81 (260)
T ss_dssp             CCEEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSSHHHHHHHHHHHTTCTT-EEEEECCCGGGGGGCCTTHHHHH
T ss_pred             CCcEEeccCCCChhhCcCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHhccc-cccccccChhhcccccchhhhhh
Confidence            47999999999988899999999999999999999999999999999999999996 89999999999988877789999


Q ss_pred             HHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh----c---CceEEEecCCC
Q psy4673         103 RDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL----N---RHLWVHKDSSM  166 (171)
Q Consensus       103 ~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~----~---~p~iiH~fsg~  166 (171)
                      +.++.+++++|||    ||++..++++.|+++|++||+||.+     +||||+|+++++++    .   .++|+|||+|+
T Consensus        82 ~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~~~~~~il~~~~~~~~~~i~H~fsG~  161 (260)
T d1j6oa_          82 EKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSD  161 (260)
T ss_dssp             HHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHSCCCSSCEEETTCCSC
T ss_pred             HHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccchHHHHHHHHhhcCCCCCeeeeccccC
Confidence            9999999999988    9999888899999999999999999     89999999987642    2   35999999999


Q ss_pred             cccc
Q psy4673         167 MKEL  170 (171)
Q Consensus       167 ~~el  170 (171)
                      .+++
T Consensus       162 ~~~~  165 (260)
T d1j6oa_         162 YEWA  165 (260)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-38  Score=254.23  Aligned_cols=145  Identities=28%  Similarity=0.482  Sum_probs=133.5

Q ss_pred             eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      +|||||||++..|.+|+++|+++|+++||.+++++|+++++|.+++++++++|+ ||+++|+|||++.++.+...+.+.+
T Consensus         1 liD~H~HL~~~~f~~d~~~vl~~a~~~gV~~ii~~~~~~~~~~~~~~la~~~~~-v~~a~GiHP~~~~~~~~~~~~~~~~   79 (260)
T d1xwya1           1 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWSTAGVHPHDSSQWQAATEEAIIE   79 (260)
T ss_dssp             CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHSTT-EEEEECCCGGGGGGCCHHHHHHHHH
T ss_pred             CEEEEeCCCChHHhCCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHhCCc-ccchhhcCcchhhhhhhhHHHHHHH
Confidence            689999999988999999999999999999999999999999999999999997 8999999999999888888889999


Q ss_pred             HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh------c-CceEEEecCCCcc
Q psy4673         105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL------N-RHLWVHKDSSMMK  168 (171)
Q Consensus       105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~------~-~p~iiH~fsg~~~  168 (171)
                      ++.+++++|||    ||++.....+.|+++|.+||+||.+     +||||+|++++++.      + .++++|||+|+.+
T Consensus        80 ~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~~~~~~il~~~~~~~~~~v~H~f~g~~~  159 (260)
T d1xwya1          80 LAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTRE  159 (260)
T ss_dssp             HHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHGGGGGGSSCEEECSCCCCHH
T ss_pred             HHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccchhHHHHHHHHhhccCcccchhhhhccHH
Confidence            99999999988    9999888889999999999999999     89999999987532      1 3489999999988


Q ss_pred             cc
Q psy4673         169 EL  170 (171)
Q Consensus       169 el  170 (171)
                      ++
T Consensus       160 ~~  161 (260)
T d1xwya1         160 EM  161 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-37  Score=247.16  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=129.2

Q ss_pred             cceEeeccCCCCC---CCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHH
Q psy4673          23 YVLIDVGANLTNR---KFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI   99 (171)
Q Consensus        23 ~~~iDtH~HL~~~---~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~   99 (171)
                      ||+|||||||+..   .+.+++++++++|..+||++++++|+++++|.++++++++||+ +++++|+||+++....  ++
T Consensus         1 M~lIDtH~Hld~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~~~~~~~--~~   77 (265)
T d1yixa1           1 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDN-VVFSCGVHPLNQNDPY--DV   77 (265)
T ss_dssp             CCEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSSHHHHHHHHHHHCSCTT-EEEEECCCTTCCSSCC--CH
T ss_pred             CEEEEecccCCccccchhhcCHHHHHHHHHHcCCCEEEEeeCCHHHHHHHHHHHHhccc-cccccccccccccccc--ch
Confidence            7899999999853   3457999999999999999999999999999999999999997 8999999999876543  57


Q ss_pred             HHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh-------cCceEEEec
Q psy4673         100 DQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL-------NRHLWVHKD  163 (171)
Q Consensus       100 ~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~-------~~p~iiH~f  163 (171)
                      +.|++++.++++||||    ||++..++++.|+++|++||+||.+     +||||+|+++++++       +.++|+|||
T Consensus        78 e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~~~~~~il~~~~~~~~~~v~H~F  157 (265)
T d1yixa1          78 EDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCF  157 (265)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHHTTGGGTCEEETTC
T ss_pred             HHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHHhhcccCcceEEEee
Confidence            8899999999999988    9999888899999999999999999     89999999987642       346899999


Q ss_pred             CCCcccc
Q psy4673         164 SSMMKEL  170 (171)
Q Consensus       164 sg~~~el  170 (171)
                      +|+.+++
T Consensus       158 sG~~~~a  164 (265)
T d1yixa1         158 TEDRETA  164 (265)
T ss_dssp             CSCHHHH
T ss_pred             cCChHHH
Confidence            9998865

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-36  Score=242.26  Aligned_cols=148  Identities=20%  Similarity=0.234  Sum_probs=132.9

Q ss_pred             ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHH
Q psy4673          22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQ  101 (171)
Q Consensus        22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~  101 (171)
                      .|+|||+||||+...+.++++.++++|++.||.+++++|+++++|++++++++++|. +++++|+|||++.+..+.+++.
T Consensus         2 ~~k~ID~H~HLd~~~~~~d~~~~l~~a~~~gV~~~v~~~t~~~~~~~~~~l~~~~~~-i~~~~GiHP~~~~~~~~~~~~~   80 (259)
T d1zzma1           2 ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAALGLHPGMLEKHSDVSLEQ   80 (259)
T ss_dssp             CCCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCSGGGHHHHHHHHHHCTT-EEEEECCCGGGGGGCCHHHHHH
T ss_pred             CCcEEEeCcCCCChhhCcCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCcc-ccccccCCchHhhccchhhHHH
Confidence            478999999999988999999999999999999999999999999999999999996 8999999999999888877777


Q ss_pred             HHHHhc--cCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh------cCceEEEecC
Q psy4673         102 LRDLVS--NTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL------NRHLWVHKDS  164 (171)
Q Consensus       102 l~~~l~--~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~------~~p~iiH~fs  164 (171)
                      +..++.  .++++|||    ||+++.++.+.|+++|++||+||.+     +||||+|+++++++      +.++|+|||+
T Consensus        81 ~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~~~~~~~l~~~~~~~~~i~H~f~  160 (259)
T d1zzma1          81 LQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFS  160 (259)
T ss_dssp             HHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHHCCTTCEEETTCC
T ss_pred             HHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHhhhccccccceeeeccc
Confidence            776654  36899888    9999888899999999999999999     89999999886632      3568999999


Q ss_pred             CCcccc
Q psy4673         165 SMMKEL  170 (171)
Q Consensus       165 g~~~el  170 (171)
                      |+.+++
T Consensus       161 g~~~~~  166 (259)
T d1zzma1         161 GSLQQA  166 (259)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            998765

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3e-20  Score=148.37  Aligned_cols=149  Identities=11%  Similarity=0.045  Sum_probs=100.8

Q ss_pred             CCCccceEeeccCCC--CCCCCC----------CHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEe
Q psy4673          19 CFDNYVLIDVGANLT--NRKFGR----------DLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTA   84 (171)
Q Consensus        19 ~~~~~~~iDtH~HL~--~~~~~~----------d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~   84 (171)
                      +++++.++|+||||.  ...|..          ...+.+++++++||..+|.+++.  -.+++.+.+++++++..+++++
T Consensus         1 ~~~~~G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~   80 (291)
T d1bf6a_           1 SFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACT   80 (291)
T ss_dssp             CCCTTSEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCCcceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeee
Confidence            357788999999994  222211          23455789999999998876653  2467888899999986799999


Q ss_pred             eeCCCCCCC-----CCHHHH-----HHHHHHhcc--CCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHH
Q psy4673          85 GIHPHEAKS-----WDEDYI-----DQLRDLVSN--TGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEF  143 (171)
Q Consensus        85 GiHP~~~~~-----~~~~~~-----~~l~~~l~~--~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH  143 (171)
                      |+||.....     .+.+.+     +++.+.+..  .++++||    ||++.   ++.|+++|++|+++|++     +||
T Consensus        81 G~hp~~~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~IGe~g~d~~~~---~~~q~~~f~~~~~~A~~~~lPv~iH  157 (291)
T d1bf6a_          81 GYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKI---TPLEEKVFIAAALAHNQTGRPISTH  157 (291)
T ss_dssp             CCCCGGGCCTHHHHSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEEECBTTBC---CHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             eecCcccCCcccCcCCHHHHHHHHHHHHHHHHhccCceEEEEEeeccccCCC---CHHHHHHHHHHHHHHHHhCCCeEEe
Confidence            999964321     122222     223333333  3455676    77653   46799999999999999     899


Q ss_pred             hhhhhH--h----Hhhhc----CceEEEe-cCCCcccc
Q psy4673         144 CQKNFS--R----KEHLN----RHLWVHK-DSSMMKEL  170 (171)
Q Consensus       144 ~r~a~~--~----~~~~~----~p~iiH~-fsg~~~el  170 (171)
                      ||++.+  +    +.+.+    +.++.|+ |+|+.+++
T Consensus       158 ~r~~~~~~e~~~~l~~~~~~~~~~~~~H~~f~~~~e~~  195 (291)
T d1bf6a_         158 TSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNI  195 (291)
T ss_dssp             CGGGCSHHHHHHHHHHTTCCGGGEEECCCCSSCCHHHH
T ss_pred             ccchhhhHHHHHHHHHhCCCcccceecccCCCCCHHHH
Confidence            998743  2    22333    2367799 99987654

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

Probab=99.35  E-value=1.4e-13  Score=108.47  Aligned_cols=129  Identities=9%  Similarity=0.097  Sum_probs=86.1

Q ss_pred             ccceEeeccCCCCC---------CCCCC-------HHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhcCCcEEEE
Q psy4673          22 NYVLIDVGANLTNR---------KFGRD-------LESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIYPGMVYST   83 (171)
Q Consensus        22 ~~~~iDtH~HL~~~---------~~~~d-------~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~~~~v~~~   83 (171)
                      .+.++|+|+|+...         .|..+       ..+.+++|...||..+|.+++..  .++..+.+++++++..++++
T Consensus        14 ~~G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~   93 (331)
T d1i0da_          14 EAGFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAA   93 (331)
T ss_dssp             HHCSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECE
T ss_pred             HCCCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEE
Confidence            45789999999632         12233       33446778889999998876543  56788888888888778999


Q ss_pred             eeeCCCCCCCCCHHHHHHHHHHhcc---C--CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhH
Q psy4673          84 AGIHPHEAKSWDEDYIDQLRDLVSN---T--GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFS  149 (171)
Q Consensus        84 ~GiHP~~~~~~~~~~~~~l~~~l~~---~--~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~  149 (171)
                      +|+||+......+...+.+..++..   .  ...++|    |++......+.|.++|++|+++|++     .+|||.+..
T Consensus        94 ~g~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~  173 (331)
T d1i0da_          94 TGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKATPFQELVLKAAARASLATGVPVTTHTAASQR  173 (331)
T ss_dssp             EECCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGT
T ss_pred             EEEecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeeccccccccHHHHHHHHHHHHHHHHhCCeEEeeccchhh
Confidence            9999986543222233444433221   1  111111    4444445567899999999999998     699988765


Q ss_pred             h
Q psy4673         150 R  150 (171)
Q Consensus       150 ~  150 (171)
                      +
T Consensus       174 ~  174 (331)
T d1i0da_         174 D  174 (331)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 4-oxalomesaconate hydratase LigJ
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=98.47  E-value=1.6e-07  Score=73.96  Aligned_cols=108  Identities=12%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCChh-----------------hHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673          42 ESVVQRAKDSGVQKIIAIGSSLK-----------------SSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD  104 (171)
Q Consensus        42 ~~vl~~a~~~gv~~~i~v~~~~~-----------------~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~  104 (171)
                      +..++.+.+.||+..|+..+...                 ..+.+.++++++|+++.+...+.|..... .+..+.++++
T Consensus        52 ~~~l~~md~~GId~~vl~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~r~~~~~~v~~~~~~~-~~~a~~e~~~  130 (342)
T d2gwga1          52 ENQLKKMQERGSDLTVFSPRASFMAHHIGDFNVSSTWAAICNELCYRVSQLFPDNFIGAAMLPQSPGVD-PKTCIPELEK  130 (342)
T ss_dssp             TTHHHHHHHHTCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECCCCTTSC-GGGGHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEEeccCcccccccCCHHHHHHHHHHHHHHHHHHHhhCCCeeeeEeecccCcccc-HHHHHHHHhh
Confidence            45678889999998776544321                 12455677889999877777888765432 3456778888


Q ss_pred             HhccCCeEEEe---cCC---CCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         105 LVSNTGNSTMN---RYN---SSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       105 ~l~~~~vvaIG---Dy~---~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      .+....++||.   +..   ......  --..|....+.|.             ++++|+.+|...+
T Consensus       131 ~~~~~~~~gi~~~~~~~~~~~~~~~l--~d~~~~~~~~~~~-------------~~glpv~~H~~~~  182 (342)
T d2gwga1         131 CVKEYGFVAINLNPDPSGGHWTSPPL--TDRIWYPIYEKMV-------------ELEIPAMIHVSTS  182 (342)
T ss_dssp             HHHTSCCCEEEECSCTTSSCCCSCCT--TSGGGHHHHHHHH-------------HHTCCEEECCCC-
T ss_pred             hHhhccceEEEEeccccccccCCCCC--CCHHHHHHHHHhh-------------cCCCeEEEccCCC
Confidence            88888888876   221   111111  1112566668888             9999999998654

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.24  E-value=9.3e-07  Score=69.45  Aligned_cols=118  Identities=11%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             EeeccCCCCCCC------------------CCCHHHHHHHHHhcCCCEEEE-eCC------Chhh--------HHHHHHH
Q psy4673          26 IDVGANLTNRKF------------------GRDLESVVQRAKDSGVQKIIA-IGS------SLKS--------SKEALRL   72 (171)
Q Consensus        26 iDtH~HL~~~~~------------------~~d~~~vl~~a~~~gv~~~i~-v~~------~~~~--------~~~~~~l   72 (171)
                      ||+|+|+....+                  .-+.+..++.+.+.||...|+ ++.      +++.        .+.+.++
T Consensus         3 ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Md~~GI~~avl~~~~p~~~~~~~~~~~~~~~~~Nd~~~~~   82 (306)
T d2f6ka1           3 IDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDGKSL   82 (306)
T ss_dssp             EEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCCCcCCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            899999853211                  126888999999999987654 211      2221        2345677


Q ss_pred             HHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCC-CCCcHHHHHHHHHHHHHHhhHHHHhhhhh
Q psy4673          73 ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNS-SQWITEIKQTLFTTFVDITALCEFCQKNF  148 (171)
Q Consensus        73 ~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~-~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~  148 (171)
                      ++++|+++. .+|.-|..   ..++..++|++++.+..++||-   .+.. ...+.     .|....+.|.         
T Consensus        83 ~~~~P~Rf~-~~a~vp~~---~~~~a~~el~r~~~~~G~~Gi~~~~~~~~~~~~dp-----~~~pi~~~~~---------  144 (306)
T d2f6ka1          83 AQQYPDQLG-YLASLPIP---YELDAVKTVQQALDQDGALGVTVPTNSRGLYFGSP-----VLERVYQELD---------  144 (306)
T ss_dssp             HHHCTTTEE-EEECCCTT---CHHHHHHHHHHHHHTSCCSEEEEESEETTEETTCG-----GGHHHHHHHH---------
T ss_pred             HHHCCCeEE-EEeecccc---hhhHHHHHHHHHHhcccceEEEecCccccccCCCc-----cchHHHHHHH---------
Confidence            889998755 56655643   2345788899988887888765   2211 01111     2455568898         


Q ss_pred             HhHhhhcCceEEEecCC
Q psy4673         149 SRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       149 ~~~~~~~~p~iiH~fsg  165 (171)
                          ++++|+.+|+..+
T Consensus       145 ----e~~lpv~~H~~~~  157 (306)
T d2f6ka1         145 ----ARQAIVALHPNEP  157 (306)
T ss_dssp             ----TTTCEEEEECCCC
T ss_pred             ----HcCCceEeccCCC
Confidence                9999999996554

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.15  E-value=4.8e-06  Score=65.35  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHhcCCCEEEEeCCC--------hhh--------HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHH
Q psy4673          40 DLESVVQRAKDSGVQKIIAIGSS--------LKS--------SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLR  103 (171)
Q Consensus        40 d~~~vl~~a~~~gv~~~i~v~~~--------~~~--------~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~  103 (171)
                      +.++.++.+.+.||+..|+..+.        ++.        .+.+.+++++||+++.+...+.|..    .+..+++|+
T Consensus        57 ~~~~~l~~Md~~gid~av~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~~~~----~~~a~~el~  132 (331)
T d2hbva1          57 DPAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQD----LDLACKEAS  132 (331)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTS----HHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEeeccc----chhhhhHHH
Confidence            56888999999999986664432        111        3445677889999866655555542    245677888


Q ss_pred             HHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673         104 DLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS  165 (171)
Q Consensus       104 ~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg  165 (171)
                      ++... .++|+.   .+......    -.-|....+.|.             ++++|+.+|+..+
T Consensus       133 r~~~~-g~~g~~l~~~~~~~~~~----d~~~~p~~~~~~-------------e~~~pv~iH~~~~  179 (331)
T d2hbva1         133 RAVAA-GHLGIQIGNHLGDKDLD----DATLEAFLTHCA-------------NEDIPILVHPWDM  179 (331)
T ss_dssp             HHHHH-TCCCEEEESCBTTBCTT----SHHHHHHHHHHH-------------HTTCCEEEECCSC
T ss_pred             Hhhhh-cceeeeecccccCcccc----cchhhHHHHHHh-------------ccCCceEEecCCC
Confidence            87653 344444   32211111    123566678898             9999999998654

>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699
species: Pseudomonas putida [TaxId: 303]

Probab=98.07  E-value=7.1e-06  Score=60.58  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             ccceEeeccCCCCC------------CCCCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673          22 NYVLIDVGANLTNR------------KFGRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIYPGMVYSTAGIH   87 (171)
Q Consensus        22 ~~~~iDtH~HL~~~------------~~~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~~~~v~~~~GiH   87 (171)
                      .|+.||+|+|+...            ....+.+.+++.++++||++.|+++...  ...+...+..+.+|.+.....+++
T Consensus         2 ~~~~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~   81 (271)
T d2ffia1           2 HLTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVMLE   81 (271)
T ss_dssp             CCCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBCCC
T ss_pred             CcCEEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCcccchhHHHHHHHHhhcCceEEEEEEe
Confidence            47899999999421            2234689999999999999877765433  334555667788887544444555


Q ss_pred             CC
Q psy4673          88 PH   89 (171)
Q Consensus        88 P~   89 (171)
                      |.
T Consensus        82 ~~   83 (271)
T d2ffia1          82 RD   83 (271)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Thermophilic reversible gamma-resorcylate decarboxylase
species: Rhizobium sp. MTP-10005 [TaxId: 267998]

Probab=97.75  E-value=1.8e-05  Score=62.16  Aligned_cols=125  Identities=10%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             eEeeccCCCCCCCC--------C-----------C-HHHHHHHHHhcCCCEEEE-eCC-------Chhh--------HHH
Q psy4673          25 LIDVGANLTNRKFG--------R-----------D-LESVVQRAKDSGVQKIIA-IGS-------SLKS--------SKE   68 (171)
Q Consensus        25 ~iDtH~HL~~~~~~--------~-----------d-~~~vl~~a~~~gv~~~i~-v~~-------~~~~--------~~~   68 (171)
                      -||.|.|...+...        .           | .+.-++.+.++||...|+ +..       +++.        .+.
T Consensus         4 ~i~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~rl~~MD~~GId~avl~~~~~~~~~~~~~~~~~~~ar~~Nd~   83 (325)
T d2dvta1           4 KVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRANDV   83 (325)
T ss_dssp             EEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEeccCCcchhhhhccCCCccchHHHHhhcCCchHHHHHHHHHCCCcEEEEecCchHhcccCChHHHHHHHHHHHHH
Confidence            48999999653221        0           1 134578899999997655 221       1221        244


Q ss_pred             HHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCC--CCCcHHHHHHHHHHHHHHhhHHHH
Q psy4673          69 ALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNS--SQWITEIKQTLFTTFVDITALCEF  143 (171)
Q Consensus        69 ~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~--~~~~~~~Q~~~F~~ql~lA~~~iH  143 (171)
                      +.+.+++||+++.+...++|...    ++.++++++++.+..++||-   .+..  ........-..|....+.|.    
T Consensus        84 l~~~~~~~P~Rf~~~~~v~~~~~----~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~----  155 (325)
T d2dvta1          84 LAEECAKRPDRFLAFAALPLQDP----DAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVE----  155 (325)
T ss_dssp             HHHHHHHCTTTEEEEECCCTTSH----HHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHH----
T ss_pred             HHHHhccCCCeEEEEEEcccccc----chhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHh----
Confidence            56778899998777778877532    46789999998887766654   2111  00000000112445567788    


Q ss_pred             hhhhhHhHhhhcCceEEEecCCC
Q psy4673         144 CQKNFSRKEHLNRHLWVHKDSSM  166 (171)
Q Consensus       144 ~r~a~~~~~~~~~p~iiH~fsg~  166 (171)
                               ++++|+.+|+..+.
T Consensus       156 ---------e~~lpv~iH~~~~~  169 (325)
T d2dvta1         156 ---------KLDVPFYLHPRNPL  169 (325)
T ss_dssp             ---------HHTCCEEEECCCCC
T ss_pred             ---------hCCceEEEecCCCC
Confidence                     99999999976543

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.00068  Score=53.55  Aligned_cols=120  Identities=18%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeC-CC-----hhhHHHHHHHHHhcCC-cEEEEeeeCCCCCC
Q psy4673          24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIG-SS-----LKSSKEALRLARIYPG-MVYSTAGIHPHEAK   92 (171)
Q Consensus        24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~-~~-----~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~   92 (171)
                      .+||.|+|+..+    .+.+|++.--+.|..-||..++... +.     ++.++...+.++...- .+.+..|+-+... 
T Consensus         2 G~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~-   80 (334)
T d1kcxa2           2 GGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYD-   80 (334)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCT-
T ss_pred             CeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCCc-
Confidence            479999999764    2357888888888889998876543 22     3455555555554321 1344555555432 


Q ss_pred             CCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          93 SWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        93 ~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                          ...+++..++....+.+++   .+.......+.   .+.+-++.++             +.++++++|+-.
T Consensus        81 ----~~~~el~~l~~~~g~~~~ki~~~~~~~~~~~~~---~l~~~~~~~~-------------~~~~~v~~H~Ed  135 (334)
T d1kcxa2          81 ----GVREELEVLVQDKGVNSFQVYMAYKDLYQMSDS---QLYEAFTFLK-------------GLGAVILVHAEN  135 (334)
T ss_dssp             ----THHHHHHHHHHTTCCCEEEEESCSTTTTCCCHH---HHHHHHHHHH-------------HTTCEEEEECCC
T ss_pred             ----chHHHHHHHHHhccCceeeeeeccCCCcccCHH---HHHHHHHHHh-------------ccCceeEEecCC
Confidence                3566777777776776665   11111111111   2344456777             777788888754

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=97.09  E-value=0.0033  Score=49.25  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             eEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeC-CC-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          25 LIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIG-SS-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        25 ~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~-~~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      +||.|||+..+    ...+|++.--+.|..-||..++... +.     ++.++...++++...   +.-+|+|+.-. ..
T Consensus         2 ~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~---~~d~~~~~~~~-~~   77 (332)
T d1ynya2           2 GIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKA---VIDYGFHLMIA-EA   77 (332)
T ss_dssp             EEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTC---SSEEEEEEECS-CC
T ss_pred             ceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccC---ccceeeEEEEe-cc
Confidence            79999999764    2346887777778888998876643 22     344445555555433   22344444322 23


Q ss_pred             CHHHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ......++..++....+.++.   ++... ..+.    ..+.+-++-|+             ..+.++++|+-+
T Consensus        78 ~~~~~~el~~~~~~~g~~~~k~~~~~~~~~~~d~----~~l~~~l~~~~-------------~~~~~~~~h~Ed  134 (332)
T d1ynya2          78 NDQVLEELESVISSEGITSLKVFMAYKNVFQADD----ETLFKTLVKAK-------------ELGALVQVHAEN  134 (332)
T ss_dssp             CHHHHHHHHHHHHTSCCCEEEEESCSTTTTCCCH----HHHHHHHHHHH-------------HHTCEEEEECSC
T ss_pred             ccchhHHHHHHHhhhcccceeeeeccccccccCH----HHHHHHHHHHh-------------hcCCEEeechhh
Confidence            445677888877776666655   22211 1122    23455667777             777788888754

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.02  E-value=0.0029  Score=49.74  Aligned_cols=88  Identities=18%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeC-CC-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673          24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIG-SS-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKS   93 (171)
Q Consensus        24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~-~~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~   93 (171)
                      .+||.|+|+-.+    ...++++.-.+.|..-||..++... +.     ++..+...+.+++...   .-+++|+-.. .
T Consensus         2 G~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~---~d~~~~~~~~-~   77 (334)
T d2ftwa2           2 GGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN---CDYSLHVAIT-W   77 (334)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCS---SEEEEEEECC-S
T ss_pred             CeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCc---ceeeEEEeec-C
Confidence            479999999754    2356888877888888998777532 22     3344444555554321   2233333222 2


Q ss_pred             CCHHHHHHHHHHhccCCeEEEe
Q psy4673          94 WDEDYIDQLRDLVSNTGNSTMN  115 (171)
Q Consensus        94 ~~~~~~~~l~~~l~~~~vvaIG  115 (171)
                      ..+....++..++....+.+.+
T Consensus        78 ~~~~~~~e~~~l~~~~g~~~~k   99 (334)
T d2ftwa2          78 WSEQVSREMEILVKERGVNSFK   99 (334)
T ss_dssp             CCHHHHHHHHHHHHHSCCCEEE
T ss_pred             cchhhhHhHHHHHHhcCccccc
Confidence            2345677777777666666655

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=96.86  E-value=0.013  Score=45.64  Aligned_cols=84  Identities=21%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             eEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCC-C-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          25 LIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGS-S-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        25 ~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~-~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      |||.|+|+..+.    ..+|++.--+.|..-||..++.... .     ++.++...+.+++...   .-+++|+.-. ..
T Consensus         1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~---~d~~~~~~~~-~~   76 (335)
T d1gkpa2           1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSY---CDYTFHMAVS-KF   76 (335)
T ss_dssp             EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCS---SEEEEEEECC-CC
T ss_pred             CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCc---cceeeEEEEe-cc
Confidence            799999996542    2468888778888889988775532 2     2344444445544331   2233333222 12


Q ss_pred             CHHHHHHHHHHhccCCeEE
Q psy4673          95 DEDYIDQLRDLVSNTGNST  113 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vva  113 (171)
                      +...+.+|.++... .+.+
T Consensus        77 ~~~~~~el~~l~~~-G~~~   94 (335)
T d1gkpa2          77 DEKTEGQLREIVAD-GISS   94 (335)
T ss_dssp             CTTHHHHHHHHHHT-TCCE
T ss_pred             ccccHHHHHHHHhh-hccc
Confidence            22356677776654 4444

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Cytosine deaminase catalytic domain
domain: Cytosine deaminase catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.019  Score=42.18  Aligned_cols=101  Identities=11%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             HHHHHhcCCCEEEEeCCC----hhhHHHHHHHHHhcCCcE-EEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cC
Q psy4673          45 VQRAKDSGVQKIIAIGSS----LKSSKEALRLARIYPGMV-YSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RY  117 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~----~~~~~~~~~l~~~~~~~v-~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy  117 (171)
                      +.++...||..+...+..    .........+........ ....+..|....... ...+.+.+.+... ...+|  ++
T Consensus        53 ~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~  130 (320)
T d1ra0a2          53 LKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYP-NGEALLEEALRLG-ADVVGAIPH  130 (320)
T ss_dssp             HHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHHHTTTCEEEEEEECTTCSSSST-THHHHHHHHHHTT-CSEECCCGG
T ss_pred             HHHHHhCCeEEEEeccccccchHHHHHHHHHHHHhhcccccccccccccccccCcH-HHHHHHHHHHHhc-ccccccCCC
Confidence            466788899876554432    223333333333333222 223334444333332 3344444444332 22333  33


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673         118 NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK  162 (171)
Q Consensus       118 ~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~  162 (171)
                      ...  ....-.+.+...+.+|.             +.++|+.+|.
T Consensus       131 ~~~--~~~~~~~~~~~~~~~A~-------------~~g~~~~~h~  160 (320)
T d1ra0a2         131 FEF--TREYGVESLHKTFALAQ-------------KYDRLIDVHC  160 (320)
T ss_dssp             GSS--SHHHHHHHHHHHHHHHH-------------HHTCEEEEEE
T ss_pred             CCC--CccccHHHHHHHHHHHH-------------HcCCCeeeee
Confidence            321  12223445666778888             5566665554

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=95.98  E-value=0.015  Score=45.34  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             eEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeC-CC-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673          25 LIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIG-SS-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW   94 (171)
Q Consensus        25 ~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~-~~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~   94 (171)
                      +||.|+|+-.+.    ..+|+..--+.|..-||..++... +.     ++......+++++... +-  +|+|-.-. ..
T Consensus         2 ~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~-~d--~~~~~~~~-~~   77 (330)
T d1nfga2           2 GIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA-ID--YGYHIIVL-DP   77 (330)
T ss_dssp             EEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCS-SE--EEEEEECS-SC
T ss_pred             cEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCe-ee--ecceEEEe-cc
Confidence            799999997542    336788887888888998777532 22     3445555556655432 22  33332211 23


Q ss_pred             CHHHHHHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          95 DEDYIDQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        95 ~~~~~~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ....++++..+. +..++++.    +...+-.+..    .+.+-++.+.             +.+.++++|+-+
T Consensus        78 ~~~~~~el~~~~-~~Gv~~~k~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~h~E~  133 (330)
T d1nfga2          78 TDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDV----TLLKTLDKAV-------------KTGSLVMVHAEN  133 (330)
T ss_dssp             CHHHHHHTTTGG-GGTCCEEEEESSSTTTTBCCHH----HHHHHHHHHH-------------HHTCEEEEECCC
T ss_pred             chhhHHHHhhhh-hhcccceeeeccccccCCCCcH----HHHHHHHHHH-------------hcCCceeechHH
Confidence            344556655443 33454433    2111111222    2344456666             666777777654

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=95.31  E-value=0.014  Score=46.70  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=25.9

Q ss_pred             eEeeccCCCCCC-----CCCCHHHHHHHHHhcCCCEEEEe
Q psy4673          25 LIDVGANLTNRK-----FGRDLESVVQRAKDSGVQKIIAI   59 (171)
Q Consensus        25 ~iDtH~HL~~~~-----~~~d~~~vl~~a~~~gv~~~i~v   59 (171)
                      +||.|+|+..+.     ..++++.--+.|..-||..++..
T Consensus         2 ~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~m   41 (384)
T d2fvka2           2 GIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAF   41 (384)
T ss_dssp             EEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEEC
Confidence            799999998642     34577776677777888877654

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Isoaspartyl dipeptidase, catalytic domain
domain: Isoaspartyl dipeptidase, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.22  Score=35.39  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             eEeeccCCCCCCC-----CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          25 LIDVGANLTNRKF-----GRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        25 ~iDtH~HL~~~~~-----~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      |||+|+|+.....     .+..+..++.+...||..++..+
T Consensus         2 lID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~   42 (284)
T d1onwa2           2 FIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL   42 (284)
T ss_dssp             EEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC
T ss_pred             EEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCC
Confidence            8999999965321     12222335667778998877643

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenine deaminase-like
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.12  E-value=0.016  Score=40.45  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             eEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673          25 LIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHP   88 (171)
Q Consensus        25 ~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP   88 (171)
                      |||+|+|+...  .+.++.+   +.+...||..++..++ .+...+..++..++.+...+...++.+
T Consensus         2 lID~H~H~~~~~~~~~~~~~---~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (267)
T d2icsa2           2 WIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISK   65 (267)
T ss_dssp             EEEEEECCCTTSSSSCCCHH---HHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESST
T ss_pred             eEEeCcCCCCCCCcchhhHH---HHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccc
Confidence            89999999532  2223333   3456789998887775 456677777777776543444444444

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=94.39  E-value=0.032  Score=43.05  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             eEeeccCCCCCCC--C-CCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHh
Q psy4673          25 LIDVGANLTNRKF--G-RDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARI   75 (171)
Q Consensus        25 ~iDtH~HL~~~~~--~-~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~   75 (171)
                      +||.|+|+-.+.+  . ++++.--+.|..-||..++....      +.+.+....+.++.
T Consensus         2 ~ID~HvH~repg~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~   61 (325)
T d1gkra2           2 VVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ   61 (325)
T ss_dssp             EEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHH
T ss_pred             cEeCCcCCCCCCCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhcc
Confidence            7999999965332  2 24766667777889987776532      23455555554443

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.35  E-value=0.18  Score=38.23  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             eEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCC
Q psy4673          25 LIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPH   89 (171)
Q Consensus        25 ~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~   89 (171)
                      +||.|+|+..+  ...+|++.--+.|..-|+..++....      +++..+..++.++.... .+.+..++.+.
T Consensus         2 ~ID~HvHlr~PG~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (310)
T d1xrta2           2 FIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKG   75 (310)
T ss_dssp             EEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGG
T ss_pred             cEeCcccCCCCCccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCCcccccceeeccC
Confidence            79999999763  23478888778888888987776532      23455555555554432 23444455544

>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein TM0936, probable catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.38  E-value=0.28  Score=36.34  Aligned_cols=20  Identities=5%  Similarity=-0.001  Sum_probs=13.1

Q ss_pred             HHHhcCCCEEEEeCCChhhH
Q psy4673          47 RAKDSGVQKIIAIGSSLKSS   66 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~~~~~~   66 (171)
                      ++-..|+..++......+..
T Consensus        53 e~l~~G~Ttv~d~~~~~~~~   72 (281)
T d1p1ma2          53 EMARHGIAGFVDMYFHEEWI   72 (281)
T ss_dssp             HHHTTTEEEEEEEESSHHHH
T ss_pred             HHhhCCeEEEeeeccCcHHH
Confidence            35678887777766655443

>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=91.85  E-value=0.096  Score=37.37  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             eEeeccCCCCCCCCC------CHH-------HHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673          25 LIDVGANLTNRKFGR------DLE-------SVVQRAKDSGVQKIIAIGSSLKSSKEALR   71 (171)
Q Consensus        25 ~iDtH~HL~~~~~~~------d~~-------~vl~~a~~~gv~~~i~v~~~~~~~~~~~~   71 (171)
                      |||+|+|+....+..      +..       ..++++..+||..+..++.....+....+
T Consensus         2 LID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTTv~d~g~~~~~~~~~~~   61 (311)
T d2r8ca2           2 LIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVE   61 (311)
T ss_dssp             EEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHHHHHHH
T ss_pred             eEEcccCcCCCCCChhhhhcCCHHHHHHHHHHHHHHHHhCCccEEEeCCCchHHHHHHHH
Confidence            899999997643321      111       12345567899988888876655554443

>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: D-aminoacylase, catalytic domain
domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain
species: Alcaligenes faecalis [TaxId: 511]

Probab=91.70  E-value=0.15  Score=39.87  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=18.3

Q ss_pred             CCCHHHHHHHHHHhcc---CCeEEEe---cCCC
Q psy4673          93 SWDEDYIDQLRDLVSN---TGNSTMN---RYNS  119 (171)
Q Consensus        93 ~~~~~~~~~l~~~l~~---~~vvaIG---Dy~~  119 (171)
                      ..++++++++.+++.+   ...+|++   +|..
T Consensus       101 ~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P  133 (358)
T d1m7ja3         101 EATADEIQAMQALADDALASGAIGISTGAFYPP  133 (358)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGG
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCcccccCCcccc
Confidence            4567888888888764   4566665   6644

>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.12  Score=36.53  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             eEeeccCCCC-------CCC--CCCHHHHHHHHHhcCCCEEEE--eCCChhhHHHHH
Q psy4673          25 LIDVGANLTN-------RKF--GRDLESVVQRAKDSGVQKIIA--IGSSLKSSKEAL   70 (171)
Q Consensus        25 ~iDtH~HL~~-------~~~--~~d~~~vl~~a~~~gv~~~i~--v~~~~~~~~~~~   70 (171)
                      |||+|+|+..       ...  .+.+..+.+++...||..++.  .+.+.+......
T Consensus         2 lID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~   58 (297)
T d1yrra2           2 FIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGV   58 (297)
T ss_dssp             EEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEEEEECCCHHHHHHHH
T ss_pred             EEeHhhCCcCCCCCCCCcccCCHHHHHHHHHHHHccCeEEEeCCCCCCCHHHHHHHH
Confidence            8999999621       111  124555677777889987653  223344444433

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=90.88  E-value=0.14  Score=36.23  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             EeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673          26 IDVGANLTNR-KFGRDLESVVQRAKDSGVQKIIAIG   60 (171)
Q Consensus        26 iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i~v~   60 (171)
                      ||.|||-... .-...+++++++|.+.|++. |.++
T Consensus         3 iDlH~Ht~~S~dg~~~~~e~v~~A~~~Gl~~-iaiT   37 (244)
T d1m65a_           3 VDLHMHTVASTHAYSTLSDYIAQAKQKGIKL-FAIT   37 (244)
T ss_dssp             EECCBCCTTSTTCCCCHHHHHHHHHHHTCCE-EEEE
T ss_pred             eeeecCCCCCCCCcCCHHHHHHHHHHCCCCE-EEEc
Confidence            8999998653 11246899999999999986 4444

>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.66  Score=34.38  Aligned_cols=42  Identities=12%  Similarity=0.077  Sum_probs=21.1

Q ss_pred             HHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEEEEeee
Q psy4673          45 VQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVYSTAGI   86 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~~~~Gi   86 (171)
                      +.++...|+..+...+.. ........+.+.+..-+++.+.++
T Consensus        53 ~~~~l~~G~tt~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~   95 (313)
T d2uz9a2          53 VRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVC   95 (313)
T ss_dssp             HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEE
T ss_pred             HHHHHHhCCeEeeecccccccchhHHHHHHHHhCCccccccee
Confidence            345667888766555543 333444444444444344444333

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.43  E-value=0.18  Score=36.10  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=25.4

Q ss_pred             eEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEE
Q psy4673          25 LIDVGANLTNR--KFGRDLESVVQRAKDSGVQKII   57 (171)
Q Consensus        25 ~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i   57 (171)
                      |||+|+|+...  ....+++...+.+...||..++
T Consensus         2 lID~HvH~~~~~~~~~~~~~~~~~~~l~~GvTTv~   36 (288)
T d1o12a2           2 FVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFL   36 (288)
T ss_dssp             EEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEE
T ss_pred             eEEecccCCCCCccccccHHHHHHHHHhCCeEEEc
Confidence            79999997542  2246788888888999998765

>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=88.63  E-value=0.46  Score=33.25  Aligned_cols=47  Identities=9%  Similarity=0.132  Sum_probs=27.5

Q ss_pred             eEeeccCCCCCCCC------CCHH-------HHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673          25 LIDVGANLTNRKFG------RDLE-------SVVQRAKDSGVQKIIAIGSSLKSSKEALR   71 (171)
Q Consensus        25 ~iDtH~HL~~~~~~------~d~~-------~vl~~a~~~gv~~~i~v~~~~~~~~~~~~   71 (171)
                      |||+|+|+......      ...+       .-+.++...||..+..++..........+
T Consensus         2 lID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTtv~d~~~~~~~~~~~~~   61 (303)
T d3be7a2           2 LMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRD   61 (303)
T ss_dssp             EEEEEECCSSCCCCSGGGTTCCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTTHHHHHHH
T ss_pred             eEEeccCcccCCCcchhhhhcChhhHHHHHHHHHHHHHhcCeeEEEECCCchhhHHHHHH
Confidence            79999998642211      1111       11245567899988888776554433333

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=1.1  Score=33.21  Aligned_cols=106  Identities=10%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC-------C---------------CHHH
Q psy4673          42 ESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHPHEAKS-------W---------------DEDY   98 (171)
Q Consensus        42 ~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~-------~---------------~~~~   98 (171)
                      ...++++-+.|+.+++.+-+ +.++.+++++.++ ||-.  ..=|+.|.....       +               +.+.
T Consensus        78 ~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~-ypP~--G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~a  154 (253)
T d1dxea_          78 PVIIKRLLDIGFYNFLIPFVETKEEAELAVASTR-YPPE--GIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQG  154 (253)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTS-CTTT--CCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHH
T ss_pred             HHHHHHHHhcCccEEEecccCCHHHHHHHHHhhe-eCCC--CCcCcCcceeccccccccccccccccceEEEeecccHHH
Confidence            46778888999998888876 4677777776654 5521  112222322111       0               1356


Q ss_pred             HHHHHHHhccCC--eEEEe--cCC----C--CCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          99 IDQLRDLVSNTG--NSTMN--RYN----S--SQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        99 ~~~l~~~l~~~~--vvaIG--Dy~----~--~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      ++.+++.+.-+.  ++-||  |..    .  +....+. ++.+++-++.|+             +.++|+-+|+++
T Consensus       155 v~nleeI~av~giD~i~iGp~DLs~slG~~g~~~~p~v-~~ai~~v~~~~~-------------~~gk~~g~~~~~  216 (253)
T d1dxea_         155 VDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDV-QKAIQHIFNRAS-------------AHGKPSGILAPV  216 (253)
T ss_dssp             HHTHHHHHTSTTCCEEEECHHHHHHHTTCTTCTTSHHH-HHHHHHHHHHHH-------------HTTCCEEEECCS
T ss_pred             HHHHHHHhccCCCceEEEecCcHHhhccCCCCCCChhH-HHHHHHHHHHHH-------------HcCCCeEEecCC
Confidence            778888887664  66799  652    2  2334443 456788889998             777776666543

>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: DR0824-like
domain: Hypothetical protein DR0824
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.18  E-value=0.23  Score=36.33  Aligned_cols=25  Identities=8%  Similarity=-0.070  Sum_probs=18.0

Q ss_pred             HHHHHhcCCCEEEEeCCChhhHHHH
Q psy4673          45 VQRAKDSGVQKIIAIGSSLKSSKEA   69 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~~~~~~~~   69 (171)
                      +.++...|+..+..++........+
T Consensus        46 ~~~~l~~G~Ttv~d~~~~~~~~~~~   70 (308)
T d2imra2          46 ADTLTRLGAGGVGDIVWAPEVMDAL   70 (308)
T ss_dssp             HHHHHHTTCCCEEEEECSHHHHHHH
T ss_pred             HHHHHHcCCeEEEehhcCHHHHHHH
Confidence            3456778999888888877766554

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=87.46  E-value=0.55  Score=32.96  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=28.6

Q ss_pred             eEeeccCCCCCCCC---------CC-----HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHH
Q psy4673          25 LIDVGANLTNRKFG---------RD-----LESVVQRAKDSGVQKIIAIGSSLKSSKEALRL   72 (171)
Q Consensus        25 ~iDtH~HL~~~~~~---------~d-----~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l   72 (171)
                      |||+|+|+......         +.     ...-..++...||..+..++............
T Consensus         2 lID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTTv~d~~~~~~~~~~~~~~   63 (310)
T d2qs8a2           2 LMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDA   63 (310)
T ss_dssp             EEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSSHHHHHHHH
T ss_pred             eEEeeeCCcccCCcccccccccCHHHHHHHHHHHHHHHHhCCceEEEECCCcchhHHHHHHh
Confidence            89999998653211         01     11123456678999888887765554444443

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=86.62  E-value=0.49  Score=33.33  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=28.4

Q ss_pred             cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673          23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS   61 (171)
Q Consensus        23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~   61 (171)
                      .+..|.|||-....-...+++++++|++.|++. |+++-
T Consensus         3 W~~aDlH~HT~~SDg~~t~~e~~~~A~~~Gld~-iaiTD   40 (229)
T d2anua1           3 WLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDV-VSITD   40 (229)
T ss_dssp             EEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSE-EEEEE
T ss_pred             ceeeecccCcCccCCCCCHHHHHHHHHHcCCCE-EEEeC
Confidence            457899999765332357999999999999985 44443

>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein GOS 1943094
species: Environmental samples

Probab=85.96  E-value=2.5  Score=30.91  Aligned_cols=41  Identities=15%  Similarity=-0.019  Sum_probs=22.5

Q ss_pred             HHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673          47 RAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIH   87 (171)
Q Consensus        47 ~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiH   87 (171)
                      ++...|+..+...+.      ..+......+.....+-++..+.|..
T Consensus        56 e~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~  102 (336)
T d2paja2          56 ELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGA  102 (336)
T ss_dssp             HHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             HHHhCCCeEEEecccccccccchhHHHHHHHHHHHhCceeEeeccee
Confidence            456788877766643      23445555565565554444444443

>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.57  E-value=2.6  Score=30.92  Aligned_cols=33  Identities=9%  Similarity=0.123  Sum_probs=18.3

Q ss_pred             HHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcC
Q psy4673          45 VQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYP   77 (171)
Q Consensus        45 l~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~   77 (171)
                      +.++...|+..+...+.. +.......+.+.+-.
T Consensus        53 ~~e~l~~GtTtv~d~~~~~~~~~~~~~~a~~~~g   86 (310)
T d2i9ua2          53 IKDLIKNGTTRVALFATLHKDSTIELFNMLIKSG   86 (310)
T ss_dssp             HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcceeeeeccchhhhHHHHHHHHHhC
Confidence            345677898876665543 334444444444443

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=83.64  E-value=1.5  Score=33.15  Aligned_cols=117  Identities=18%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCC-------CC--
Q psy4673          28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHE-------AK--   92 (171)
Q Consensus        28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~-------~~--   92 (171)
                      .=.|||+.   .+. +.+.+|-++|...++.=+...      +...++.+++..+.-.|=.=+|.=+..       ..  
T Consensus        76 V~lHlDH~---~~~-e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~  151 (284)
T d1gvfa_          76 LALHLDHH---ESL-DDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESA  151 (284)
T ss_dssp             BEEEEEEE---CCH-HHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CC
T ss_pred             EEeeeccc---cch-HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeecccccccccccccc
Confidence            33688874   344 456788889998755544432      223445556666642233334443321       00  


Q ss_pred             CCCHHHHHHHHHHhccC--C--eEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673          93 SWDEDYIDQLRDLVSNT--G--NSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS  164 (171)
Q Consensus        93 ~~~~~~~~~l~~~l~~~--~--vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs  164 (171)
                      .++  ..++..++++..  -  .++||    -|.. .+..  .   |.+.-++..             ..+.|+++|+-|
T Consensus       152 ~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~l--~---~~~L~~i~~-------------~~~vPLVlHGgS  210 (284)
T d1gvfa_         152 FLT--DPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKI--D---FQRLAEIRE-------------VVDVPLVLHGAS  210 (284)
T ss_dssp             SSC--CHHHHHHHHHHHCCSEEEECSSCCSSCCSS-CCCC--C---HHHHHHHHH-------------HCCSCEEECCCT
T ss_pred             ccC--CHHHHHHHHHHhCCCEEeeecCceeeccCC-CCcc--c---cchhhhhhc-------------cccCCeEeeCCC
Confidence            111  122333333332  2  34567    3322 2222  2   233345566             678999999999


Q ss_pred             CCccc
Q psy4673         165 SMMKE  169 (171)
Q Consensus       165 g~~~e  169 (171)
                      |.++|
T Consensus       211 G~~~e  215 (284)
T d1gvfa_         211 DVPDE  215 (284)
T ss_dssp             TCCHH
T ss_pred             CCCHH
Confidence            99876