Psyllid ID: psy4691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
NVSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHccEEEEEEEEcccccccccccccccccEEEEEccccccccccEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccccHHcccccHHccccccccccccccHccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccEEEEEEEEEEcccEEEEEEccHHHHHHHHHccccEEEEccccccEccccEEEEEcccccccHHHHHHHHEEEEEEcHHHccc
Coil and Loop (DISEMBL)
nvsnedvssdihkcgptLHVLVSNlnvssqgylvqkkekrpnsedYIVANMefhpmilqpgstpsvmrqhqgfpiqeFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKersnikdswvlhhdnadpfadssetkkpslvdvDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSenylgnvaWDAKVVTNAWWvkadqvsktaptgeflttgsfmirgkknffppcqlamGISFLFKLEESSISR
Flexible Loop (DISEMBL)
nvsnedvssdihkcgpTLHVLVSNLNVSSQgylvqkkekrpNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKlenvkrdhetrlsaleqtqlvdKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNAdpfadssetkkPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEkalksaekktkqtlkdvqtmtninkarkVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKadqvsktaptgefLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR
Low Complexity Region (SEG)
NVSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR
Disordered region (IsUnstruct)
***********HKCGPTLHVLVSNLNVSSQGYLV***********YIVANMEFHPMIL*************GFPIQEFESFAAAVDEFFSTA********************************************AELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHH*****************VDVDLDLSAYANAKRFFD***********************************TMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKL*******
Disordered Region (DISOPRED)
****EDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQ*K***********ANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTA**************************************LVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQ*****DPVASIIKQLKLNINHITLLLRVH********************************DVDLDLSAYANAKRFFDLKRSAAK**************************************VYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEES****
Disordered Region (DISEMBL)
**********IHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLK******************************DVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR
Disordered Region (DISPRO)
NVSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRV***************************KKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEES****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NVSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q8CCP0	1064	Nuclear export mediator f	yes	N/A	0.907	0.324	0.451	1e-88
O60524	1076	Nuclear export mediator f	yes	N/A	0.910	0.321	0.448	2e-87
Q9VBX1	992	Nuclear export mediator f	yes	N/A	0.863	0.330	0.446	2e-84
Q9USN8	1021	Uncharacterized protein C	yes	N/A	0.844	0.314	0.329	2e-38
Q12532	1038	Translation-associated el	yes	N/A	0.865	0.316	0.260	6e-25
Q59020	671	Uncharacterized protein M	yes	N/A	0.113	0.064	0.422	4e-06

>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/434 (45%), Positives = 249/434 (57%), Gaps = 89/434 (20%)

Query: 26  NVSSQGYLVQKKEKRPN------SEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFE 79
           N + +GY++QK+E +P+      +ED I+   EFHP +           QH   P  EFE
Sbjct: 241 NFNGKGYIIQKREAKPSLDADKPAED-ILTYEEFHPFLFS---------QHLQCPYIEFE 290

Query: 80  SFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAEL 139
           SF  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K EL
Sbjct: 291 SFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGEL 350

Query: 140 IINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLL 199
           I  N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA  IK+LKL  NH+T+LL
Sbjct: 351 IEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLL 410

Query: 200 R----VHKERSNIKDSWVLHHDNADPFADSSETK----------KPSLVDVDLDLSAYAN 245
           R    + +E     D+ + + D   P     + K          KP LVDVDL LSAYAN
Sbjct: 411 RNPYLLSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYAN 470

Query: 246 AKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
           AK+++D KR AAKK Q+T+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF W
Sbjct: 471 AKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLW 530

Query: 306 FISSENYL---GNVAWDAKVVTNAW------WVKADQVSKTA-----PTG---------- 341
           FISSENYL   G      +++   +      +V AD    T+     PTG          
Sbjct: 531 FISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTE 590

Query: 342 -----------------------------------EFLTTGSFMIRGKKNFFPPCQLAMG 366
                                              E+LTTGSFMIRGKKNF PP  L MG
Sbjct: 591 AGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMG 650

Query: 367 ISFLFKLEESSISR 380
            SFLFK++ES + R
Sbjct: 651 FSFLFKVDESCVWR 664

Plays a role in nuclear export.
Mus musculus (taxid: 10090)

>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/435 (44%), Positives = 246/435 (56%), Gaps = 89/435 (20%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V+ E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL---GNVAWDAKVVTNAW------WVKADQVSKTA-----PTG--------- 341
           WFISSENYL   G      +++   +      +V AD    T+     PTG         
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLT 591

Query: 342 ------------------------------------EFLTTGSFMIRGKKNFFPPCQLAM 365
                                               E+LTTGSFMIRGKKNF PP  L M
Sbjct: 592 EAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMM 651

Query: 366 GISFLFKLEESSISR 380
           G SFLFK++ES + R
Sbjct: 652 GFSFLFKVDESCVWR 666

Plays a role in nuclear export.

Homo sapiens (taxid: 9606)

>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn PE=1 SV=2

 Score =  313 bits (801), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 241/414 (58%), Gaps = 86/414 (20%)

Query: 29  SQGYLVQKKEKRP---NSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
           S+GY++Q KE++P    + ++   N+EFHP +           Q + F    FESF  AV
Sbjct: 276 SKGYIIQVKEEKPTENGTVEFFFRNIEFHPYLFI---------QFKNFEKATFESFMEAV 326

Query: 86  DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
           DEF+ST ES KID+K +QQER+ALKKL NVK DH  RL  L + Q VD++KAELI +NQ 
Sbjct: 327 DEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQS 386

Query: 146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
            VD AI A++  IA+QLSW DI   VK+AQ + D VAS IKQLKL  NHI+L+L    + 
Sbjct: 387 LVDNAIRAVQSAIASQLSWPDIHELVKEAQANGDAVASSIKQLKLETNHISLMLSDPYDN 446

Query: 206 SNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQ 265
                             D  +  + ++VDVDL LSA+ANA+R++D+KRSAA+K++KT+ 
Sbjct: 447 DE---------------DDDLKDPEVTVVDVDLALSAWANARRYYDMKRSAAQKEKKTVD 491

Query: 266 STEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAK---- 321
           +++KALKSAE+KT+QTLK+V+T++NI KARKV+WFEKFYWFISSENYL     DA+    
Sbjct: 492 ASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISSENYLVIGGRDAQQNEL 551

Query: 322 ----------VVTNAWWVKADQVSKTAPTG------------------------------ 341
                     +  +A    A  V    PTG                              
Sbjct: 552 IVKRYMRPKDIYVHAEIQGASSVIIQNPTGEEIPPKTLLEAGSMAISYSVAWDAKVVTNS 611

Query: 342 ---------------EFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
                          E+L TGSFMIRGKKNF P C L MG+S LFKLE+S I R
Sbjct: 612 YWVTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTMGLSLLFKLEDSFIER 665

Plays a role in regulating nuclear transport possibly through directly binding to both emb and cargo proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 191/398 (47%), Gaps = 77/398 (19%)

Query: 52  EFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKK 111
           +FHP   QP       R+   FP     ++   VDEFFS+ E+ K+  +A  +   A ++
Sbjct: 315 DFHP--FQPLQLVQANRKCMEFP-----TYNECVDEFFSSIEAQKLKKRAHDRLATAERR 367

Query: 112 LENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARV 171
           LE+ K D   +L +L+  Q     +A+ I  N E V+A I  I   +   + W DIE ++
Sbjct: 368 LESAKEDQARKLQSLQDAQATCALRAQAIEMNPELVEAIISYINSLLNQGMDWLDIE-KL 426

Query: 172 KQAQRHNDPVASIIK-QLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKK 230
            Q+Q+   PVA+ I+  LKL  N +T+ L   +   N  +S     D+ D   D ++ K+
Sbjct: 427 IQSQKRRSPVAAAIQIPLKLIKNAVTVFLPNPESVDNSDESSETSDDDLDDSDDDNKVKE 486

Query: 231 PSL------VDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKD 284
             +      V++DL L A+ANA++ ++L+R A  K+ KT ++  KALKS ++K +Q LK 
Sbjct: 487 GKVSSKFIAVELDLSLGAFANARKQYELRREALIKETKTAEAASKALKSTQRKIEQDLKR 546

Query: 285 VQT--MTNINKARKVYWFEKFYWFISSENYLGNVAWDAK--------------------- 321
             T     I   RK ++FEKF+WFISSE YL     DA+                     
Sbjct: 547 STTADTQRILLGRKTFFFEKFHWFISSEGYLVLGGRDAQQNELLFQKYCNTGDIFVCADL 606

Query: 322 ------VVTN------------------------AW--------W-VKADQVSKTAPTGE 342
                 +V N                        AW        W V+ D+VSK APTGE
Sbjct: 607 PKSSIIIVKNKNPHDPIPPNTLQQAGSLALASSKAWDSKTVISAWWVRIDEVSKLAPTGE 666

Query: 343 FLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
            L TGSF IR KKN+ PP  L MG   L++L+E S  R
Sbjct: 667 ILPTGSFAIRAKKNYLPPTVLIMGYGILWQLDEKSSER 704

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 197/449 (43%), Gaps = 120/449 (26%)

Query: 30  QGYLVQKKEKRPNSEDYI----VANMEF-----HPM--ILQPGSTPSVMRQHQGFPIQEF 78
           +GY++ K+     +E+YI     A++EF     HP    +  G T S         I E 
Sbjct: 282 KGYILAKR-----NENYISEKDTADLEFIYDTFHPFKPYINGGDTDSSC-------IIEV 329

Query: 79  ES-FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKA 137
           E  +   +D+FFST ES K  L+   QE  A KK+++ + +++ ++ AL   Q +++ K 
Sbjct: 330 EGPYNRTLDKFFSTIESSKYALRIQNQESQAQKKIDDARAENDRKIQALLDVQELNERKG 389

Query: 138 ELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNI--NHI 195
            LII N   ++   LA++  I  Q+ W  IE  +K  Q+  + +A ++  L LN+  N I
Sbjct: 390 HLIIENAPLIEEVKLAVQGLIDQQMDWNTIEKLIKSEQKKGNRIAQLL-NLPLNLKQNKI 448

Query: 196 TLLLRVHKERSNIKDSWVLHHDNADPFADSS--------------ETKKPSL-------- 233
           ++ L +  +  N         DN      +               E    S+        
Sbjct: 449 SVKLDLSSKELNTSSD----EDNESEGNTTDSSSDSDSEDMESSKERSTKSMKRKSNEKI 504

Query: 234 -VDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKT----KQTLKDVQTM 288
            V +DL LSAYANA  +F++K+++A+KQ+K  ++  KA+K+ E K     K+ LKD  ++
Sbjct: 505 NVTIDLGLSAYANATEYFNIKKTSAQKQKKVEKNVGKAMKNIEVKIDQQLKKKLKDSHSV 564

Query: 289 TNINKARKVYWFEKFYWFISSENYL---------------GNVAWDAKVVTNAW----WV 329
             + K R  Y+FEK+ WFISSE +L                 +  D   ++N++    W+
Sbjct: 565 --LKKIRTPYFFEKYSWFISSEGFLVMMGKSPAETDQIYSKYIEDDDIYMSNSFNSHVWI 622

Query: 330 KADQVSKTAPT---------------------------------------GEFLTTGSFM 350
           K  + ++  P                                           L  G+F 
Sbjct: 623 KNPEKTEVPPNTLMQAGILCMSSSEAWSKKISSSPWWCFAKNVSKFDGSDNSILPEGAFR 682

Query: 351 IRGK--KNFFPPCQLAMGISFLFKLEESS 377
           ++ +  +N  PP QL MG  FL+K++ S 
Sbjct: 683 LKNENDQNHLPPAQLVMGFGFLWKVKTSG 711

Involved in protein biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1625 PE=4 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 35/45 (77%), Gaps = 2/45 (4%)

Query: 325 NAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFF--PPCQLAMGI 367
           + +WVK +Q+SKTA +GE+L  G+F+IRG+++++   P +L +G+
Sbjct: 558 DTYWVKPEQISKTAESGEYLKRGAFVIRGERHYYRNTPLELGVGV 602

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
340713692	971	PREDICTED: nuclear export mediator facto	0.852	0.333	0.507	1e-105
350409527	971	PREDICTED: nuclear export mediator facto	0.852	0.333	0.512	1e-105
345495372	972	PREDICTED: nuclear export mediator facto	0.913	0.356	0.490	1e-104
403277934	1056	PREDICTED: nuclear export mediator facto	0.910	0.327	0.502	1e-100
390469065	1056	PREDICTED: nuclear export mediator facto	0.910	0.327	0.5	1e-100
345804334	1056	PREDICTED: nuclear export mediator facto	0.910	0.327	0.492	1e-100
426376842	1056	PREDICTED: nuclear export mediator facto	0.910	0.327	0.5	1e-99
397523544	1055	PREDICTED: nuclear export mediator facto	0.910	0.327	0.5	1e-99
395838618	1056	PREDICTED: nuclear export mediator facto	0.910	0.327	0.497	1e-99
194388162	1055	unnamed protein product [Homo sapiens]	0.910	0.327	0.5	2e-99

>gi|340713692|ref|XP_003395373.1| PREDICTED: nuclear export mediator factor NEMF homolog [Bombus terrestris]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/416 (50%), Positives = 263/416 (63%), Gaps = 92/416 (22%)

Query: 29  SQGYLVQKKEKRPNS---EDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
           S+GY++QKKE +P +   E++I  N+EFHP + +         Q+  +P +EF+SF  AV
Sbjct: 242 SKGYIIQKKESKPTTDGKENFIYTNIEFHPFLFE---------QYADYPYKEFDSFDVAV 292

Query: 86  DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
           DE+FST E  K+DLKA+QQERDALKKLENVK+DH+ RL  LE+TQ +DK+KAELI  NQ 
Sbjct: 293 DEYFSTMEGQKLDLKALQQERDALKKLENVKKDHDQRLINLEKTQELDKQKAELISRNQA 352

Query: 146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
            VD AILAI+  +ANQ++W DI+  +K+A+   DPVAS IKQLKL  NHI+LLL      
Sbjct: 353 LVDNAILAIQSALANQMAWPDIKILLKEAESRGDPVASAIKQLKLETNHISLLLH----- 407

Query: 206 SNIKDSWVLHHDNADPFADSSETK--KPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKT 263
                         DP+ DS E    KP L+D+DL  +A+ NA ++++ KRSAAKKQQKT
Sbjct: 408 --------------DPYEDSDEESELKPMLIDIDLAHTAFGNATKYYNQKRSAAKKQQKT 453

Query: 264 IQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL---------- 313
           I+S +KALKSAEKKTKQTLK+VQT+ +INK RK+YWFEKFYWFISSENYL          
Sbjct: 454 IESQDKALKSAEKKTKQTLKEVQTIHSINKLRKIYWFEKFYWFISSENYLVIGGRDQQQN 513

Query: 314 ------------------------------GNVAWDAKVVTN----------AW------ 327
                                         GN +   K +            AW      
Sbjct: 514 ELIVKRYLKSGDIYVHADLTGASSVVIKNPGNDSVPPKTLAEAGTMAVAYSIAWDAKVVA 573

Query: 328 ---WVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
              WV  DQVSKTAPTGE+LTTGSFMIRGKKN+ PPCQL MG+ FLF+LEESSI R
Sbjct: 574 GAWWVNNDQVSKTAPTGEYLTTGSFMIRGKKNYLPPCQLVMGLGFLFRLEESSIER 629

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409527|ref|XP_003488770.1| PREDICTED: nuclear export mediator factor NEMF homolog [Bombus impatiens]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/416 (51%), Positives = 265/416 (63%), Gaps = 92/416 (22%)

Query: 29  SQGYLVQKKEKRPNS---EDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
           S+GY++QKKE +P +   ED+I  N+EFHP + +         Q+  +P +EF+SF  AV
Sbjct: 242 SKGYIIQKKESKPTADGKEDFIYTNIEFHPFLFE---------QYTNYPYKEFDSFDVAV 292

Query: 86  DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
           DE+FST E  K+DLKA+QQERDALKKLENVK+DH+ RL  LE+TQ +DK+KAELI  NQ 
Sbjct: 293 DEYFSTMEGQKLDLKALQQERDALKKLENVKKDHDQRLINLEKTQELDKQKAELISRNQT 352

Query: 146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
            VD AILAI+  +ANQ++W DI+  +K+A+   DPVAS IKQLKL  NHI+LLL      
Sbjct: 353 LVDNAILAIQSALANQMAWPDIKVLLKEAESRGDPVASAIKQLKLETNHISLLLH----- 407

Query: 206 SNIKDSWVLHHDNADPFADSSETK--KPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKT 263
                         DP+ DS E    KP L+D+DL  +A+ NA ++++ KRSAAKKQQKT
Sbjct: 408 --------------DPYEDSDEESELKPMLIDIDLAHTAFGNATKYYNQKRSAAKKQQKT 453

Query: 264 IQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL---------- 313
           I+S +KALKSAEKKTKQTLK+VQT+ +INK RK+YWFEKFYWFISSENYL          
Sbjct: 454 IESQDKALKSAEKKTKQTLKEVQTIHSINKLRKIYWFEKFYWFISSENYLVIGGRDQQQN 513

Query: 314 ----------GNVAWDAK-------VVTN-----------------------AW------ 327
                     G++   A        V+ N                       AW      
Sbjct: 514 ELIVKRYLKSGDIYVHADLTGASSVVIKNPGSDSVPPKTLAEAGTMAVAYSIAWDAKVVA 573

Query: 328 --W-VKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
             W V  DQVSKTAPTGE+LTTGSFMIRGKKN+ PPCQL MG+ FLF+LEESSI R
Sbjct: 574 GAWWVNNDQVSKTAPTGEYLTTGSFMIRGKKNYLPPCQLVMGLGFLFRLEESSIER 629

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495372|ref|XP_001603770.2| PREDICTED: nuclear export mediator factor NEMF homolog [Nasonia vitripennis]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/444 (49%), Positives = 274/444 (61%), Gaps = 97/444 (21%)

Query: 6   DVSSDIHKCGPTLHVLVSNLNVS----SQGYLVQKKEKRP---NSEDYIVANMEFHPMIL 58
           DV+ D+ K    L      LN +    S+GY++QKKE++P     E+++ AN+EFHP + 
Sbjct: 215 DVAKDVDKLYSALENAEKMLNNAKKDVSKGYIIQKKEEKPIKDGEEEFMYANIEFHPFLF 274

Query: 59  QPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRD 118
           +         QH     +E+E+F  AVDE+FST E  K+DLK +QQERDALKKL+NVK+D
Sbjct: 275 E-----QCKNQH----YKEYETFDKAVDEYFSTMEGQKLDLKVLQQERDALKKLDNVKKD 325

Query: 119 HETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHN 178
           H+ RL  L +TQ  DK+KAELI  NQE VD AILA++  +ANQ+SW+DI+  +K+AQ   
Sbjct: 326 HDQRLVTLGKTQEADKQKAELITRNQELVDNAILAMQSALANQMSWQDIQTLLKEAQAKG 385

Query: 179 DPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETK---KPSLVD 235
           DPVAS IK LKL  NHIT+LL                   +DP+ DS + +   KP  VD
Sbjct: 386 DPVASAIKHLKLESNHITMLL-------------------SDPYEDSDDDEPELKPMTVD 426

Query: 236 VDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKAR 295
           +DL  SA++NA R++D KRSAAKKQQKTI+S  KALKSAE+KTKQTLK+VQ + +INKAR
Sbjct: 427 IDLAHSAFSNATRYYDQKRSAAKKQQKTIESQGKALKSAERKTKQTLKEVQAIHSINKAR 486

Query: 296 KVYWFEKFYWFISSENYL--------------------GNVAWDAK-------VVTN--- 325
           KVYWFEKFYWFI+SENYL                    G+V   A        VV N   
Sbjct: 487 KVYWFEKFYWFITSENYLVIGGRDQQQNELIVKRYLRSGDVYVHADLTGASSVVVKNPNG 546

Query: 326 --------------------AW---------WVKADQVSKTAPTGEFLTTGSFMIRGKKN 356
                               AW         WV +DQVSKTAPTGE+LTTGSFMIRGKKN
Sbjct: 547 GPVPPKSLAEAGTMAVAYSIAWEAKVIAGSYWVNSDQVSKTAPTGEYLTTGSFMIRGKKN 606

Query: 357 FFPPCQLAMGISFLFKLEESSISR 380
           + PPCQL MG+ FLF+LE+SSI R
Sbjct: 607 YLPPCQLIMGLGFLFRLEDSSIER 630

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403277934|ref|XP_003930597.1| PREDICTED: nuclear export mediator factor NEMF isoform 2 [Saimiri boliviensis boliviensis]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/414 (50%), Positives = 256/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKRETKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+QTQ +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQTQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQVVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V  E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVSVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390469065|ref|XP_003734045.1| PREDICTED: nuclear export mediator factor NEMF isoform 2 [Callithrix jacchus]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 256/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+QTQ +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQTQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V  E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVSVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA +SAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFRSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345804334|ref|XP_863447.2| PREDICTED: nuclear export mediator factor NEMF isoform 6 [Canis lupus familiaris]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/414 (49%), Positives = 255/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREVKPSLEVDKPTEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA+ IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVANAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           +  E++  +          +      +  +P LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDISVEKNETELPKGKKKKQKNKQLQKPQKNRPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTTGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426376842|ref|XP_004055191.1| PREDICTED: nuclear export mediator factor NEMF isoform 2 [Gorilla gorilla gorilla]

 Score =  369 bits (948), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 256/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V+ E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397523544|ref|XP_003831789.1| PREDICTED: nuclear export mediator factor NEMF isoform 2 [Pan paniscus]

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 255/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V  E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVSVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395838618|ref|XP_003792209.1| PREDICTED: nuclear export mediator factor NEMF [Otolemur garnettii]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/414 (49%), Positives = 256/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N + +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFNGKGYIIQKREIKPSLEADKPAEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA+ IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVATAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V  E++  + S        +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVVDDVSVEKNETEPSKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194388162|dbj|BAG65465.1| unnamed protein product [Homo sapiens]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 255/414 (61%), Gaps = 68/414 (16%)

Query: 26  NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
           N S +GY++QK+E +P  E     + I+   EFHP +           QH   P  EFES
Sbjct: 241 NFSGKGYIIQKREIKPCLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query: 81  FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
           F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
                           V+ E++  +          +      +  KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
           NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query: 305 WFISSENYL--------------------------------GNV------AWDAKVVTNA 326
           WFISSENYL                                G +      AWDA+V+T+A
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGEPIPPRTLTEAGTMALCYSAAWDARVITSA 591

Query: 327 WWVKADQVSKTAPTGEFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
           WWV   QVSKTAPTGE+LTTGSFMIRGKKNF PP  L MG SFLFK++ES + R
Sbjct: 592 WWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWR 645

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
UNIPROTKB|F1N8T0	1071	NEMF "Uncharacterized protein"	0.781	0.277	0.518	2.4e-98
UNIPROTKB|G3V5V3	999	NEMF "Nuclear export mediator	0.734	0.279	0.521	4.7e-97
MGI|MGI:1918305	1064	Nemf "nuclear export mediator	0.731	0.261	0.519	2.6e-96
UNIPROTKB|O60524	1076	NEMF "Nuclear export mediator	0.734	0.259	0.521	3.5e-96
FB|FBgn0259152	992	Clbn "Caliban" [Drosophila mel	0.686	0.263	0.531	5.2e-96
ZFIN|ZDB-GENE-060929-284	883	zgc:153813 "zgc:153813" [Danio	0.731	0.314	0.513	1.8e-93
UNIPROTKB|F1MKA1	1079	NEMF "Uncharacterized protein"	0.728	0.256	0.456	2.8e-83
UNIPROTKB|F1SHY2	1078	NEMF "Uncharacterized protein"	0.731	0.257	0.457	5.9e-83
DICTYBASE|DDB_G0289583	1268	DDB_G0289583 "DUF814 family pr	0.678	0.203	0.382	3.3e-65
TAIR|locus:2158844	1080	emb1441 "embryo defective 1441	0.660	0.232	0.370	1.3e-61

UNIPROTKB|F1N8T0 NEMF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 746 (267.7 bits), Expect = 2.4e-98, Sum P(2) = 2.4e-98
 Identities = 170/328 (51%), Positives = 210/328 (64%)

Query:     5 EDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQ 59
             E V S + K    +  L  + N   +GY++QKKEK+P+ E     + I    EFHP +  
Sbjct:   224 EKVLSALEKAEGYM-TLTEDFN--GKGYIIQKKEKKPSLEPDKPAEDIYTYEEFHPFLFS 280

Query:    60 PGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDH 119
                      QH   P  EF+SF  A DEF+S  E  KIDLKA+QQE+ ALKKLENV+RDH
Sbjct:   281 ---------QHSKCPYLEFDSFNKAADEFYSKLEGQKIDLKALQQEKQALKKLENVRRDH 331

Query:   120 ETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHND 179
             E RL AL+Q Q VDK K ELI  N E V  AI  +R  +ANQ+ W +I A VK+AQ   D
Sbjct:   332 EQRLEALQQAQEVDKIKGELIEMNLEIVSRAIQVVRSALANQIDWTEIGAIVKEAQAQGD 391

Query:   180 PVASIIKQLKLNINHITLLLR----VHKERSNIKDSWVLHHDNADPFADSSETK------ 229
             PVA+ IK+LKL  NHIT+LLR    + +E    +D+ +   +  +P     + K      
Sbjct:   392 PVANAIKELKLQTNHITMLLRNPYVLSEEEEEGEDADLEKEETEEPKGKKKKNKSKQLKK 451

Query:   230 ----KPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDV 285
                 KPSLVDVDL LSAYANAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+V
Sbjct:   452 PQKNKPSLVDVDLSLSAYANAKKYYDHKRHAAKKTQKTVEAAEKAFKSAEKKTKQTLKEV 511

Query:   286 QTMTNINKARKVYWFEKFYWFISSENYL 313
             QT+T I KARKVYWFEKF WFISSENYL
Sbjct:   512 QTVTTIQKARKVYWFEKFLWFISSENYL 539

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051168 "nuclear export" evidence=IEA

UNIPROTKB|G3V5V3 NEMF "Nuclear export mediator factor NEMF" [Homo sapiens (taxid:9606)]

 Score = 726 (260.6 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 161/309 (52%), Positives = 203/309 (65%)

Query:    26 NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
             N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct:   199 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 249

Query:    81 FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
             F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct:   250 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 309

Query:   141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
               N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct:   310 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 369

Query:   201 ----VHKERSNIKDSWV-LHHDNADP-----------FADSSETKKPSLVDVDLDLSAYA 244
                 + +E  +  D  V +  +  +P                +  KP LVDVDL LSAYA
Sbjct:   370 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 429

Query:   245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
             NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct:   430 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 489

Query:   305 WFISSENYL 313
             WFISSENYL
Sbjct:   490 WFISSENYL 498

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918305 Nemf "nuclear export mediator factor" [Mus musculus (taxid:10090)]

 Score = 726 (260.6 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 160/308 (51%), Positives = 203/308 (65%)

Query:    26 NVSSQGYLVQKKEKRPN------SEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFE 79
             N + +GY++QK+E +P+      +ED I+   EFHP +           QH   P  EFE
Sbjct:   241 NFNGKGYIIQKREAKPSLDADKPAED-ILTYEEFHPFLFS---------QHLQCPYIEFE 290

Query:    80 SFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAEL 139
             SF  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K EL
Sbjct:   291 SFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGEL 350

Query:   140 IINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLL 199
             I  N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA  IK+LKL  NH+T+LL
Sbjct:   351 IEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLL 410

Query:   200 R----VHKERSNIKDSWVLHHDNADPFADSSETK----------KPSLVDVDLDLSAYAN 245
             R    + +E     D+ + + D   P     + K          KP LVDVDL LSAYAN
Sbjct:   411 RNPYLLSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYAN 470

Query:   246 AKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
             AK+++D KR AAKK Q+T+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF W
Sbjct:   471 AKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLW 530

Query:   306 FISSENYL 313
             FISSENYL
Sbjct:   531 FISSENYL 538

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0051168 "nuclear export" evidence=ISO

UNIPROTKB|O60524 NEMF "Nuclear export mediator factor NEMF" [Homo sapiens (taxid:9606)]

 Score = 726 (260.6 bits), Expect = 3.5e-96, Sum P(2) = 3.5e-96
 Identities = 161/309 (52%), Positives = 203/309 (65%)

Query:    26 NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
             N S +GY++QK+E +P+ E     + I+   EFHP +           QH   P  EFES
Sbjct:   241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291

Query:    81 FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
             F  AVDEF+S  E  KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct:   292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351

Query:   141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
               N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVAS IK+LKL  NH+T+LLR
Sbjct:   352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411

Query:   201 ----VHKERSNIKDSWV-LHHDNADP-----------FADSSETKKPSLVDVDLDLSAYA 244
                 + +E  +  D  V +  +  +P                +  KP LVDVDL LSAYA
Sbjct:   412 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471

Query:   245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
             NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct:   472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531

Query:   305 WFISSENYL 313
             WFISSENYL
Sbjct:   532 WFISSENYL 540

GO:0051168 "nuclear export" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0259152 Clbn "Caliban" [Drosophila melanogaster (taxid:7227)]

 Score = 704 (252.9 bits), Expect = 5.2e-96, Sum P(2) = 5.2e-96
 Identities = 153/288 (53%), Positives = 200/288 (69%)

Query:    29 SQGYLVQKKEKRPNSE---DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
             S+GY++Q KE++P      ++   N+EFHP +           Q + F    FESF  AV
Sbjct:   276 SKGYIIQVKEEKPTENGTVEFFFRNIEFHPYLFI---------QFKNFEKATFESFMEAV 326

Query:    86 DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
             DEF+ST ES KID+K +QQER+ALKKL NVK DH  RL  L + Q VD++KAELI +NQ 
Sbjct:   327 DEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQS 386

Query:   146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
              VD AI A++  IA+QLSW DI   VK+AQ + D VAS IKQLKL  NHI+L+L      
Sbjct:   387 LVDNAIRAVQSAIASQLSWPDIHELVKEAQANGDAVASSIKQLKLETNHISLML------ 440

Query:   206 SNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQ 265
                 D +   +D  D   D   T    +VDVDL LSA+ANA+R++D+KRSAA+K++KT+ 
Sbjct:   441 ---SDPY--DNDEDDDLKDPEVT----VVDVDLALSAWANARRYYDMKRSAAQKEKKTVD 491

Query:   266 STEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL 313
             +++KALKSAE+KT+QTLK+V+T++NI KARKV+WFEKFYWFISSENYL
Sbjct:   492 ASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISSENYL 539

GO:0006611 "protein export from nucleus" evidence=IMP

ZFIN|ZDB-GENE-060929-284 zgc:153813 "zgc:153813" [Danio rerio (taxid:7955)]

 Score = 688 (247.2 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
 Identities = 148/288 (51%), Positives = 192/288 (66%)

Query:    26 NVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
             N S QG+++QK E++PN    + A      ++      P +  QH      EFESF  AV
Sbjct:   242 NFSGQGFIIQKSEQKPN----VCAGDAAEELLTYEEFHPFLFCQHVKSRYVEFESFNKAV 297

Query:    86 DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
             DEFFS  ES K+D++A+QQE+ ALKKLENV++DH+ RL AL Q Q V++ K EL+  N  
Sbjct:   298 DEFFSQMESQKLDMRALQQEKQALKKLENVRKDHQQRLEALHQAQEVERLKGELVELNLP 357

Query:   146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
              V  A+  +R  +ANQ+ W +I   V +AQ   DPVA  IK+LKL  NHITLLLR + E 
Sbjct:   358 VVQRALQVVRSALANQVDWVEIGQMVTEAQAAGDPVACAIKELKLQSNHITLLLR-NPEA 416

Query:   206 SNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQ 265
                  +  L          S   +K  LVD+D++LSA+ANAKR++D KRSAAKK+QKT++
Sbjct:   417 CPEGGAAELQSGKK-----SRSREKAVLVDIDINLSAHANAKRYYDSKRSAAKKEQKTVE 471

Query:   266 STEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL 313
             + +KA KSAEKKTKQTLKDVQT+T+I KARKVYWFEKF WF+SSENYL
Sbjct:   472 AAQKAFKSAEKKTKQTLKDVQTVTSIQKARKVYWFEKFLWFLSSENYL 519

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MKA1 NEMF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 611 (220.1 bits), Expect = 2.8e-83, Sum P(2) = 2.8e-83
 Identities = 141/309 (45%), Positives = 193/309 (62%)

Query:    28 SSQGYLVQKKEKRPNSE-----DYIVANMEFHPMIL-QPGSTPSVMRQHQGFPIQEFESF 81
             + +GY++QK+E +P+ E     + I+   EFHP +  Q    P +  + + F  +  + F
Sbjct:   243 NGKGYIIQKREIKPSLEVDKPTEDILTYEEFHPFLFSQHSQCPYI--EFESFD-KAVDEF 299

Query:    82 AAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELII 141
              + ++      +   +     Q+E+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI 
Sbjct:   300 YSKIE-----GQKIDLKALQQQKEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIE 354

Query:   142 NNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR- 200
              N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA+ IK+LKL  NH+T+LLR 
Sbjct:   355 MNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVANAIKELKLQTNHVTMLLRN 414

Query:   201 ---VHKERSNIKDSWVLHHDNADPFADSSETKK-------------PSLVDVDLDLSAYA 244
                + +E  +  D  +    N +P     + KK             P LVDVDL LSAYA
Sbjct:   415 PYLLSEEEDDDVDGDISTEKN-EPEPPKGKKKKQKNKQLQKPQKNRPLLVDVDLSLSAYA 473

Query:   245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
             NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF 
Sbjct:   474 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 533

Query:   305 WFISSENYL 313
             WFISSENYL
Sbjct:   534 WFISSENYL 542

GO:0051168 "nuclear export" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SHY2 NEMF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 609 (219.4 bits), Expect = 5.9e-83, Sum P(2) = 5.9e-83
 Identities = 141/308 (45%), Positives = 194/308 (62%)

Query:    28 SSQGYLVQKKEKRPNSE-DY----IVANMEFHPMIL-QPGSTPSVMRQHQGFPIQEFESF 81
             + +GY++QK+E +P+ E D     I+   EFHP +  Q    P +  + + F  +  + F
Sbjct:   243 NGKGYIIQKREVKPSLEVDKPTVDILTYEEFHPFLFSQHSQCPYI--EFESFD-KAVDEF 299

Query:    82 AAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELII 141
              + ++      +   +     Q+E+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI 
Sbjct:   300 YSKIE-----GQKIDLKALQQQKEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIE 354

Query:   142 NNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR- 200
              N + VD AI  +R  +ANQ+ W +I   VK+AQ   DPVA+ IK+LKL  NH+T+LLR 
Sbjct:   355 MNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVANAIKELKLQTNHVTMLLRN 414

Query:   201 ---VHKERSNIKDSWVLHHDN-ADPFADSSETKK-----------PSLVDVDLDLSAYAN 245
                + +E  +  D  +    N ++P     + +K           P LVDVDL LSAYAN
Sbjct:   415 PYLLSEEEDDDVDGDINTEKNESEPPKGKKKKQKNKQLQKPQKNRPLLVDVDLSLSAYAN 474

Query:   246 AKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
             AK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF W
Sbjct:   475 AKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLW 534

Query:   306 FISSENYL 313
             FISSENYL
Sbjct:   535 FISSENYL 542

GO:0051168 "nuclear export" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0289583 DDB_G0289583 "DUF814 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 474 (171.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 104/272 (38%), Positives = 162/272 (59%)

Query:    56 MILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENV 115
             M++     P + +Q++     EFESF AAVD+FFS  ES K++ + + QE+  LKKL+ V
Sbjct:   300 MVIYEEFVPYLYKQYELKKFIEFESFDAAVDQFFSEIESQKVEQQRIAQEQVVLKKLDKV 359

Query:   116 KRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQ 175
             K D + R+ +L   ++ +  KA+LI  N + VD  IL IR  +A+ + WE +   +K+ +
Sbjct:   360 KEDQQRRIDSLFANEVENIRKAQLIEANLQEVDQCILIIRSGVASSMDWETLNQLLKEEK 419

Query:   176 RHND-PVASIIKQLKLNINHITLLLR---VHKERSNIKDSWVLHHDNADPFADSSETK-- 229
             + N   VA+ I +LKL  N ITL L    ++ +     D      D      D +  K  
Sbjct:   420 KKNPYSVATKIHRLKLESNQITLSLTDNFLYDDNDGDDDDDDEESDEESDEEDQNTKKSI 479

Query:   230 --------KPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQT 281
                     KP+L+DVD+ LSA+ANA++++D K+ + +K QKTI   E ALK+AEKKT+Q 
Sbjct:   480 KKSKTSNQKPNLIDVDISLSAFANARKYYDTKKQSHEKAQKTISQAEFALKAAEKKTRQQ 539

Query:   282 LKDVQTMTNINKARKVYWFEKFYWFISSENYL 313
             L + ++  ++   RK++WFEKF+WFISS+NY+
Sbjct:   540 LSETKSKNSMIAMRKIFWFEKFHWFISSDNYI 571

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2158844 emb1441 "embryo defective 1441" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 100/270 (37%), Positives = 154/270 (57%)

Query:    66 VMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSA 125
             ++ Q +    ++FE+F AA+DEF+S  ES + + +   +E  A  KL  +++D E R+  
Sbjct:   317 LLNQFKSRVYEKFETFDAALDEFYSKIESQRSEQQQKAKEDSASLKLNKIRQDQENRVQI 376

Query:   126 LEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASII 185
             L++        AELI  N E VDAAILA+R  +A  + W+D+   VK+ ++  +PVA +I
Sbjct:   377 LKKEVNHCVNMAELIEYNLEDVDAAILAVRVALAKGMGWDDLARMVKEEKKLGNPVAGVI 436

Query:   186 KQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYAN 245
              +L L  N +TLLL                 +N D   D  +T     V+VDL LSA+ N
Sbjct:   437 DRLYLEKNCMTLLLC----------------NNLDEMDDDEKTVPVEKVEVDLSLSAHGN 480

Query:   246 AKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
             A+R++++K+    KQ+KT+ + EKA ++AEKKT+  L   + +  I+  RKV+WFEKF W
Sbjct:   481 ARRWYEMKKKQETKQEKTVSAHEKAFRAAEKKTRHQLSQEKVVATISHMRKVHWFEKFNW 540

Query:   306 FISSENYL---GNVAWDAKVVTNAWWVKAD 332
             FISSENYL   G  A   +++   +  K D
Sbjct:   541 FISSENYLVISGRDAQQNEMIVKRYMSKGD 570

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	380
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	1e-09
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	5e-06

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 48/235 (20%)

Query: 79  ESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAE 138
           + F  A+DE F   +  ++  +  ++    LKKLEN     E  L  LE+     ++K E
Sbjct: 265 KLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE 324

Query: 139 LIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLL 198
           L+  N + ++  + ++R        +   E    +  +   P  +          +    
Sbjct: 325 LLYANLQLIEEGLKSVRLAD-----FYGNEEIKIELDKSKTPSEN-------AQRYFKKY 372

Query: 199 LRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAK 258
            ++   +                            V++D  LS    A  +++  ++A +
Sbjct: 373 KKLKGAK----------------------------VNLDRQLSELKEAIAYYESAKTALE 404

Query: 259 KQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL 313
           K         +  K+ E+  ++ +++    +   K +K  WFEKF WF+SS+ +L
Sbjct: 405 KA--------EGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGFL 451

Length = 564

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 317 AWDA-KVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFF 358
           AW +  V  +  WVK  QV K A +GE L  G   IRGK+++ 
Sbjct: 513 AWKSGLVPVDYTWVKPVQVPKGAKSGEVLYKGQKTIRGKRDYI 555

Length = 564

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG2030|consensus	911		100.0
COG1293	564	Predicted RNA-binding protein homologous to eukary	100.0
PF05833	455	FbpA: Fibronectin-binding protein A N-terminus (Fb	99.68
PF05670	90	DUF814: Domain of unknown function (DUF814); Inter	97.38
COG1293	564	Predicted RNA-binding protein homologous to eukary	95.94
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	91.72

>KOG2030|consensus

Probab=100.00  E-value=3.7e-92  Score=732.54  Aligned_cols=342  Identities=51%  Similarity=0.820  Sum_probs=313.9

Q ss_pred             HhhcccHHHHHHHccCCCCccEEEeecCCCCCCcccceecccceecccCCCCCCcccccccCCcccccCCHHHHHHHHhc
Q psy4691          11 IHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFS   90 (380)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~Gyiv~k~~~~~~~~~~~~~~~~F~P~~~~~~~~P~~l~~~~~~~~~~f~SFNeAlDeFFs   90 (380)
                      +..++.++..|+.... .+.|||...++..+.+.. .++|++||| +         +.++.......|++||+|+|+|||
T Consensus       232 v~~~eE~~~elit~~~-~~~Gyi~~~k~~~~~s~~-~~~y~~f~p-~---------~~~fKs~~~k~fetf~ea~Def~S  299 (911)
T KOG2030|consen  232 VKDQEEEDRELITGKL-GSKGYILEEKEKKPISTK-EFIYDEFHP-L---------GVQFKSEPVKKFETFNEAVDEFFS  299 (911)
T ss_pred             HHHHHHHHHHHHhCCC-cccchhHHhhcccCCCcc-ceeeccccc-c---------ccccccchhhhccchhhHHHHHHH
Confidence            4445567777877643 588999988877755433 899999999 4         577888888999999999999999


Q ss_pred             chhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy4691          91 TAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEAR  170 (380)
Q Consensus        91 ~~e~~k~~~k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~  170 (380)
                      .+++++..++...++.++.+||.+++.+|+++++.+++.++.++++|+||+.|..+|+.+|.+|++++++||+|.+|++|
T Consensus       300 ~IEsqk~~lr~~~~E~qa~kKld~vr~Dq~~rvq~Lqq~qe~~~~kAelIe~N~eLVe~~il~I~s~la~~m~W~dieKL  379 (911)
T KOG2030|consen  300 TIESQKSELRVKNQELQAEKKLDKVRKDQKERVQELQQVQELNRRKAELIEPNPELVEAAILAIQSALAQQMDWKDIEKL  379 (911)
T ss_pred             HHhhhhHHHHHHhhHhHHHhhhhcchhhHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHccCCcHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccccccccccccccEEEEEeccccccccccccccccCCCCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHH
Q psy4691         171 VKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFF  250 (380)
Q Consensus       171 i~~~~~~g~pva~~I~~l~l~~n~i~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~idl~ls~~~NA~~yy  250 (380)
                      ++.+|++|||+|..|.++++..|.+++.|.++.+ |           +    +|+....+-+.|+|||+||||+||++||
T Consensus       380 ik~eqKkGn~vAk~i~~l~l~~n~~t~~L~d~~d-d-----------~----~de~k~~e~~~VeiDLslsA~aNArr~y  443 (911)
T KOG2030|consen  380 IKSEQKKGNPVAKSIDKLKLEKNEATLRLKDPED-D-----------N----DDEKKSSEVIVVEIDLSLSAFANARRYY  443 (911)
T ss_pred             HHHHHhcCchHhhhhhHHHHhhhhheeecCCccc-c-----------c----chhhccccceeeeeeccccchhhHHHHH
Confidence            9999999999999999999999999999993221 0           0    0112234458899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhccccccccccceeeEEecCCcee----------------
Q psy4691         251 DLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLG----------------  314 (380)
Q Consensus       251 ~~~K~~~~K~~kt~~~~~kalk~~e~k~~~~l~~~~~~~~~~~~Rk~~WFEKF~WFiSSeg~LV----------------  314 (380)
                      +++|+++.|++||..++++|||++++|++++|++......+.+.|++|||||||||||||||||                
T Consensus       444 ~~kk~aa~K~kKT~~a~eKAlK~~e~Ki~q~lk~~~~~~~i~k~Rk~~wFEKf~wFiSSEg~LVi~GrdaqQnEllvkky  523 (911)
T KOG2030|consen  444 EMKKEAAEKIKKTVDASEKALKSAERKIEQQLKQVKTVSRIKKIRKVYWFEKFHWFISSEGYLVIGGRDAQQNELLVKKY  523 (911)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehheeEEEecCcEEEEcCCChhhhhHHHHhh
Confidence            9999999999999999999999999999999999888889999999999999999999999999                


Q ss_pred             -------------------------------------------cccccCCccceEEEEeCCCccccCCCCcccCCceeEE
Q psy4691         315 -------------------------------------------NVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMI  351 (380)
Q Consensus       315 -------------------------------------------S~AW~~k~~~~a~WV~~~QVSKt~psGeyL~~GsFmI  351 (380)
                                                                 |.||+++++++||||||+|||||||||||||+|||||
T Consensus       524 ~~~~DiY~had~~gaSsviIkN~~~~eipp~TL~eAg~ma~~~S~aWdakvvssaWwv~~dqVSKtaptgeyL~~GSFmI  603 (911)
T KOG2030|consen  524 LEPGDIYVHADLHGASSVIIKNPPKTEIPPKTLEEAGSMALCYSKAWDAKVVSSAWWVYPDQVSKTAPTGEYLPTGSFMI  603 (911)
T ss_pred             CCCCCeEEecccCCCceEEEeCCCCCCCChhhHHHHHHHHhHHhhhhcccccccceEEecccccccCCCCccccccceEE
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             ecccccCCCCCceeEEEEEEEeccCccCC
Q psy4691         352 RGKKNFFPPCQLAMGISFLFKLEESSISR  380 (380)
Q Consensus       352 rGkKnyl~p~~L~mg~G~lf~~~~~~~~~  380 (380)
                      |||||||||++|+|||||||+|++++++|
T Consensus       604 rgkkN~lpp~~LvmG~GlLfrldes~~E~  632 (911)
T KOG2030|consen  604 RGKKNFLPPHQLVMGLGLLFRLDESSIER  632 (911)
T ss_pred             ecccCCCCchhheecceeEEEeccchhhh
Confidence            99999999999999999999999999876

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

Probab=100.00  E-value=6.5e-36  Score=314.24  Aligned_cols=239  Identities=27%  Similarity=0.431  Sum_probs=186.2

Q ss_pred             CHHHHHHHHhcchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4691          80 SFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIA  159 (380)
Q Consensus        80 SFNeAlDeFFs~~e~~k~~~k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~~  159 (380)
                      +||+++|+||...............+...++||++++..|++.++++++.++.++.+|+||++|+++|+..+..|+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~v~~~~~  345 (564)
T COG1293         266 LFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADF  345 (564)
T ss_pred             HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhehhhh
Confidence            79999999999988765555567788999999999999999999999988889999999999999999999999987654


Q ss_pred             cCCChHHHHHHHHHHhhcCCccccccccccccccEEEEEeccccccccccccccccCCCCCCCCCCcCCCCCeEEEEecC
Q psy4691         160 NQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLD  239 (380)
Q Consensus       160 ~~~~W~~I~~~i~~~~~~g~pva~~I~~l~l~~n~i~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~idl~  239 (380)
                      .+  +.+|.--+   .....|++     ......++...|                              ++..|.|+..
T Consensus       346 ~~--~~~i~i~l---~~~~~~~~-----~~~~~~~~~~kl------------------------------k~~~~~~~~~  385 (564)
T COG1293         346 YG--NEEIKIEL---DKSKTPSE-----NAQRYFKKYKKL------------------------------KGAKVNLDRQ  385 (564)
T ss_pred             cc--ccceeecc---CcCcccch-----hhHHHhhhhhhc------------------------------cCceeehhhh
Confidence            43  22221100   00000000     000112222222                              2578999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHhhhhhhhhccccccccccceeeEEecCCcee----
Q psy4691         240 LSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAE-KKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLG----  314 (380)
Q Consensus       240 ls~~~NA~~yy~~~K~~~~K~~kt~~~~~kalk~~e-~k~~~~l~~~~~~~~~~~~Rk~~WFEKF~WFiSSeg~LV----  314 (380)
                      +++.+|+..||++++++.+|...     .++++.++ +.+++.+.+    ....+.|+++||||||||+|||||||    
T Consensus       386 ~~~~~~~~~y~e~~~~~lek~~~-----~~~ieei~ee~ie~~~~~----~~k~~~kkk~~~ek~~~~~ss~Gf~vi~Gr  456 (564)
T COG1293         386 LSELKEAIAYYESAKTALEKAEG-----KKAIEEIREELIEEGLLK----SKKKKRKKKEWFEKFRWFVSSDGFLVIGGR  456 (564)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccc-----hhhHHHHHHHHHHHHHhh----hhHHhhhhhhhcccceeeeccCCeEEEEec
Confidence            99999999999999888776654     44555554 333333332    34556789999999999999999999    


Q ss_pred             ------------------------------------------------------cccccCCc-cceEEEEeCCCccccCC
Q psy4691         315 ------------------------------------------------------NVAWDAKV-VTNAWWVKADQVSKTAP  339 (380)
Q Consensus       315 ------------------------------------------------------S~AW~~k~-~~~a~WV~~~QVSKt~p  339 (380)
                                                                            |+||.++. ++|+|||++.||||+||
T Consensus       457 na~qNe~l~~k~~~~~DlwfHa~~~~gshvvik~~~~~~~e~ti~eAA~~Aa~~Ska~~~~~v~vd~t~vk~vqv~K~a~  536 (564)
T COG1293         457 NAKQNEELVKKYAEKDDLWFHADDIPGSHVVIKTEGKEPSEETILEAAQLAASYSKAWKSGLVPVDYTWVKPVQVPKGAK  536 (564)
T ss_pred             CcccchHHHHhhcccCcEEEEccCCCCCeEEEeCCCCCCChHHHHHHHHHHHHhchHhhcCCCceEEEEEcccccCCCCC
Confidence                                                                  99999995 99999999999999999


Q ss_pred             CCcccCCceeEEecccccCCCCCceeEE
Q psy4691         340 TGEFLTTGSFMIRGKKNFFPPCQLAMGI  367 (380)
Q Consensus       340 sGeyL~~GsFmIrGkKnyl~p~~L~mg~  367 (380)
                      ||+||++|+|||+|++||+..++|.+++
T Consensus       537 ~G~vl~~g~~~I~~k~~~~~~~~lk~~~  564 (564)
T COG1293         537 SGEVLYKGQKTIRGKRDYITIVKLKLAV  564 (564)
T ss_pred             CceEEecCcEEEEEccccccccccccCC
Confidence            9999999999999999999999988763

>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO

Probab=99.68  E-value=1.2e-17  Score=171.74  Aligned_cols=175  Identities=25%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             cHHHHHHHccC-CCCccEEEeecCCCCCCcccceecccceecccCCCCCCcccccccCCcccccCCHHHHHHHHhcchhh
Q psy4691          16 PTLHVLVSNLN-VSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAES   94 (380)
Q Consensus        16 ~~~~~l~~~~~-~~~~Gyiv~k~~~~~~~~~~~~~~~~F~P~~~~~~~~P~~l~~~~~~~~~~f~SFNeAlDeFFs~~e~   94 (380)
                      ..+..|++... +...|||+...+..          ..|+||.         +.++.+....+|+|||+|||+||+..+.
T Consensus       233 ~~~~~l~~~l~~~~~~p~l~~~~~~~----------~~f~~~~---------l~~~~~~~~~~f~s~~~ald~yf~~~~~  293 (455)
T PF05833_consen  233 EAIRELLNELEEGQFKPYLYYDDGKP----------KDFSPFP---------LKQYEELEVKEFDSFNEALDEYFSEKEE  293 (455)
T ss_dssp             HHHHHHHHHHT---S----EEE---------------EEESS-----------TT---S--EE-SSHHHHHHHHT-----
T ss_pred             HHHHHhhhhcccccCccEEEEecCcc----------cEEEEEe---------ccccccccccCCCCHHHHHHHHHHHHHH
Confidence            44556666554 35778998876533          6888885         7777777789999999999999998875


Q ss_pred             h-hHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy4691          95 H-KIDL---KAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEAR  170 (380)
Q Consensus        95 ~-k~~~---k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~  170 (380)
                      + ...+   +.....+..+++++++++.+++.++.++ ..+.++.+|+||.+|.+.+           +.|++|.++..+
T Consensus       294 ~~~~~~~~~~l~k~l~~~~~klek~l~~l~~~~~~~~-~~~~~~~~gelL~a~~~~i-----------~~g~~~~~l~~~  361 (455)
T PF05833_consen  294 EERLEQKKKRLEKKLEKKIKKLEKKLEKLEEELEESE-KAENYREYGELLLANLHQI-----------KKGMKWVELEDF  361 (455)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHh-----------hCCCCEEEhhhh
Confidence            5 2222   2222456667777777777777777777 4477888888888888777           899999999887


Q ss_pred             HHHHhhcCCccccccccccccccEEEEEeccccccccccccccccCCCCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHH
Q psy4691         171 VKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFF  250 (380)
Q Consensus       171 i~~~~~~g~pva~~I~~l~l~~n~i~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~idl~ls~~~NA~~yy  250 (380)
                      +.. .                                                      .++.|+||+++|+++||..||
T Consensus       362 ~~~-~------------------------------------------------------~~i~I~Ld~~~s~~eNA~~yf  386 (455)
T PF05833_consen  362 YEE-G------------------------------------------------------EEIEIPLDPSLSPSENAQKYF  386 (455)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcc-C------------------------------------------------------CceEEEECCCCCHHHHHHHHH
Confidence            632 1                                                      148899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691         251 DLKRSAAKKQQKTIQSTEKALKSAEKKTKQ  280 (380)
Q Consensus       251 ~~~K~~~~K~~kt~~~~~kalk~~e~k~~~  280 (380)
                      +++|++..|    ++.++.+++.+++++..
T Consensus       387 ~k~kK~k~k----~~~~~~~i~~~~~el~~  412 (455)
T PF05833_consen  387 KKYKKLKRK----IEKLEERIEEAEKELEY  412 (455)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            999766544    45555555555555443

Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.

>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity

Probab=97.38  E-value=9.2e-05  Score=60.38  Aligned_cols=22  Identities=18%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             cccccCCccceEEEEeCCCccc
Q psy4691         315 NVAWDAKVVTNAWWVKADQVSK  336 (380)
Q Consensus       315 S~AW~~k~~~~a~WV~~~QVSK  336 (380)
                      |+||+.+..+.++|..+++|+|
T Consensus        69 Ska~~~~~~v~V~yt~~k~v~K   90 (90)
T PF05670_consen   69 SKAWKKGEKVEVDYTQGKYVKK   90 (90)
T ss_pred             CHhhccCCCeEEEEeehHhccC
Confidence            9999999999999999999987

This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

Probab=95.94  E-value=0.14  Score=55.04  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             ccccCCHHHHHHHHhcchhhh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy4691          75 IQEFESFAAAVDEFFSTAESH-KIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILA  153 (380)
Q Consensus        75 ~~~f~SFNeAlDeFFs~~e~~-k~~~k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~  153 (380)
                      ...|.+++..+|+||...... ++.+...    ...+++++.+..++++|+.++++.+.++..++......++|-.-+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~  332 (564)
T COG1293         257 LKAYADLEKLFNEALDEKFERDKIKQLAS----ELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQL  332 (564)
T ss_pred             ccccchhhHHHHHHHHHHhhhhhHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999888765 3333332    46789999999999999999999999999998999999888776666


Q ss_pred             HHHHHhcCCChHHHHHHHHHHhhcCCccccccccccccccEEEEEeccccccccccccccccCCCCCCCCCCcCCCCCeE
Q psy4691         154 IRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSL  233 (380)
Q Consensus       154 v~~~~~~~~~W~~I~~~i~~~~~~g~pva~~I~~l~l~~n~i~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (380)
                      |..+...                                    +.+.+..                        ..+.+.
T Consensus       333 i~~~~~~------------------------------------v~~~~~~------------------------~~~~i~  352 (564)
T COG1293         333 IEEGLKS------------------------------------VRLADFY------------------------GNEEIK  352 (564)
T ss_pred             hhhhhhh------------------------------------hehhhhc------------------------ccccee
Confidence            6554322                                    1111000                        012478


Q ss_pred             EEEecCCCHHHHHHHHHHHHHHHH
Q psy4691         234 VDVDLDLSAYANAKRFFDLKRSAA  257 (380)
Q Consensus       234 V~idl~ls~~~NA~~yy~~~K~~~  257 (380)
                      |.+|.+.++-+|+.+||...++..
T Consensus       353 i~l~~~~~~~~~~~~~~~~~~klk  376 (564)
T COG1293         353 IELDKSKTPSENAQRYFKKYKKLK  376 (564)
T ss_pred             eccCcCcccchhhHHHhhhhhhcc
Confidence            888888888899999999988775

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=91.72  E-value=9.4  Score=34.12  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4691         244 ANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKD  284 (380)
Q Consensus       244 ~NA~~yy~~~K~~~~K~~kt~~~~~kalk~~e~k~~~~l~~  284 (380)
                      ..|-.|+++++   .++.+.++....+|..+.+++.+....
T Consensus        93 ~eAie~l~k~~---~~l~~~~~~l~~~l~~l~~~~~~l~~~  130 (145)
T COG1730          93 DEAIEFLKKRI---EELEKAIEKLQQALAELAQRIEQLEQE  130 (145)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888874   444566666666666666655554333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 54/394 (13%), Positives = 111/394 (28%), Gaps = 133/394 (33%)

Query: 2   VSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNS------EDYIVANMEFHP 55
           +S E++           H+++S   VS    L      +         E+ +  N +F  
Sbjct: 46  LSKEEID----------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93

Query: 56  MILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAES----HKIDLKAVQQERDALKK 111
            ++ P  T    RQ    P      +    D  ++  +     +   L+   + R AL +
Sbjct: 94  -LMSPIKTEQ--RQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 112 LENVKRDHE------------TRLSALEQTQLVDKEKAELIINN--------QESVDAAI 151
           L    R  +            T ++      +    K +  ++           +    +
Sbjct: 147 L----RPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 152 LAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERS----- 206
           L + Q +  Q+   +  +R   +      + SI  +L+       L  + ++        
Sbjct: 199 LEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYE-NCLLVLL 251

Query: 207 NIKDSWVLHH--------------DNADPFADSSETKKPSLVDVD--------LDLSA-Y 243
           N++++   +                  D F  ++ T   SL              L   Y
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 244 ANAKRFFDLKRSAAK-----------------------------KQQKTIQSTEKALKSA 274
            + +   DL R                                 K    I+S+   L+ A
Sbjct: 311 LDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 275 E-KKTKQTL----KDVQTMTNI-NKARKVYWFEK 302
           E +K    L           +I      + WF+ 
Sbjct: 370 EYRKMFDRLSVFPPSA----HIPTILLSLIWFDV 399

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3doa_A	288	Fibrinogen binding protein; structural genomics, M	96.08

>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}

Probab=96.08  E-value=0.0048  Score=59.26  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             cceecccCCCCCCcccccccCCcccccCCHHHHHHHHhcchhhh
Q psy4691          52 EFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESH   95 (380)
Q Consensus        52 ~F~P~~~~~~~~P~~l~~~~~~~~~~f~SFNeAlDeFFs~~e~~   95 (380)
                      +|+||.         |.+|.+ +.+.|+|||+|||+||+.++..
T Consensus       250 ~f~~~~---------l~~~~~-~~~~f~s~s~~Ld~yy~~k~~~  283 (288)
T 3doa_A          250 DFYFIK---------LNQFND-DTVTYDSLNDLLDRFYDARGER  283 (288)
T ss_dssp             CEESSC---------CTTCCS-CCEECSSHHHHHHHHTCC----
T ss_pred             EEEEEe---------chhccC-CceeCCCHHHHHHHHHHHhhhh
Confidence            788886         888876 6778999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00