Psyllid ID: psy4720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mtisflhealpcqcdidgsksfeceqfggqcqckpnvigrrcemcatgyygfpdchpcncpftavcdsyTGKLAQVLIQVVtfpnypscklwync
Flexible Loop (DISEMBL)
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTfpnypscklwync
Low Complexity Region (SEG)
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Disordered region (IsUnstruct)
***SFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN*
Disordered Region (DISOPRED)
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Disordered Region (DISEMBL)
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Disordered Region (DISPRO)
****FLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q00174	3712	Laminin subunit alpha OS=	yes	N/A	0.747	0.019	0.597	5e-19
Q21313	3672	Laminin-like protein epi-	yes	N/A	0.715	0.018	0.569	2e-17
Q61292	1799	Laminin subunit beta-2 OS	no	N/A	0.673	0.035	0.542	1e-13
P15800	1801	Laminin subunit beta-2 OS	yes	N/A	0.673	0.035	0.542	1e-13
Q61001	3718	Laminin subunit alpha-5 O	no	N/A	0.747	0.019	0.5	2e-13
Q16787	3333	Laminin subunit alpha-3 O	yes	N/A	0.726	0.020	0.507	5e-13
O15230	3695	Laminin subunit alpha-5 O	no	N/A	0.747	0.019	0.472	3e-12
P55268	1798	Laminin subunit beta-2 OS	no	N/A	0.673	0.035	0.5	8e-12
P02469	1786	Laminin subunit beta-1 OS	no	N/A	0.726	0.038	0.473	2e-10
A4D0S4	1761	Laminin subunit beta-4 OS	no	N/A	0.568	0.030	0.545	1e-09

>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T  +   ALPC CD  GS SFEC  FGGQCQCKPNVI R C  C + YYGFPDC PC C
Sbjct: 1364 LTADYNSGALPCNCDYAGSTSFECHPFGGQCQCKPNVIERTCGACRSRYYGFPDCKPCKC 1423

Query: 61   PFTAVCDSYTGK 72
            P +A+C+  TG+
Sbjct: 1424 PNSAMCEPTTGE 1435

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Drosophila melanogaster (taxid: 7227)

>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 48/72 (66%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T  F   AL C C   GS+SF+CEQ+GGQC+CKP VIGRRCE CA GYY FP+C  C C
Sbjct: 1404 LTTDFNAAALSCDCVAQGSESFQCEQYGGQCKCKPGVIGRRCERCAPGYYNFPECIKCQC 1463

Query: 61   PFTAVCDSYTGK 72
                 CD  TG+
Sbjct: 1464 NAGQQCDERTGQ 1475

Caenorhabditis elegans (taxid: 6239)

>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 6/70 (8%)

Query: 9   ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF--PDCHPCNC----PF 62
           ALPCQCD  GS S EC   GGQC+CKP V+GRRC++CATGYYGF    C  C C      
Sbjct: 781 ALPCQCDPQGSLSSECSPHGGQCRCKPGVVGRRCDVCATGYYGFGPAGCQACQCSPDGAL 840

Query: 63  TAVCDSYTGK 72
           +A+C+  +G+
Sbjct: 841 SALCEGTSGQ 850

Laminin-3 (S-laminin) regulates the formation of motor nerve terminals.

Mus musculus (taxid: 10090)

>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 9   ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF--PDCHPCNC----PF 62
           ALPCQCD  GS S EC   GGQC+CKP V+GRRC+ CATGYYGF    C  C C      
Sbjct: 783 ALPCQCDPQGSLSSECNPHGGQCRCKPGVVGRRCDACATGYYGFGPAGCQACQCSPDGAL 842

Query: 63  TAVCDSYTGK 72
           +A+C+  +G+
Sbjct: 843 SALCEGTSGQ 852

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Rattus norvegicus (taxid: 10116)

>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +++ + + ALPC C   G+ S  CE FGGQC C+ +VIGR C  CATGY+GFP+C PC+C
Sbjct: 1432 LSLFYNNGALPCGCHEVGAVSPTCEPFGGQCPCRGHVIGRDCSRCATGYWGFPNCRPCDC 1491

Query: 61   PFTAVCDSYTGK 72
                +CD  TG+
Sbjct: 1492 -GARLCDELTGQ 1502

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Alpha-5 may be the major laminin alpha chain of adult epithelial and/or endothelial basal laminae.

Mus musculus (taxid: 10090)

>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 3    ISFLHE-ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCP 61
            ++F H+ ALPC+C   G+    C   GGQC C+PNVIGR+C  CATG+YGFP C PC+C 
Sbjct: 1256 VAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCG 1315

Query: 62   FTAVCDSYTGK 72
               +C+  TG+
Sbjct: 1316 -RRLCEEMTGQ 1325

Laminin-5 is thought to be involved in (1) cell adhesion via integrin alpha-3/beta-1 in focal adhesion and integrin alpha-6/beta-4 in hemidesmosomes, (2) signal transduction via tyrosine phosphorylation of pp125-FAK and p80, (3) differentiation of keratinocytes.

Homo sapiens (taxid: 9606)

>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +++ + + A PC C   G+    CE FGGQC C  +VIGR C  CATGY+GFP+C PC+C
Sbjct: 1427 LSLFYNNGARPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDC 1486

Query: 61   PFTAVCDSYTGK 72
                +CD  TG+
Sbjct: 1487 -GARLCDELTGQ 1497

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 9   ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF--PDCHPCNC----PF 62
           ALPCQC+  GS S EC   GGQC CKP V+GRRC++CA GYYGF    C  C C      
Sbjct: 780 ALPCQCNPQGSLSSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFGPTGCQACQCSHEGAL 839

Query: 63  TAVCDSYTGK 72
           +++C+  +G+
Sbjct: 840 SSLCEKTSGQ 849

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|P02469|LAMB1_MOUSE Laminin subunit beta-1 OS=Mus musculus GN=Lamb1 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 7/76 (9%)

Query: 4   SFLHE-ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF-PD-CHPCNC 60
           + +H+  L C+CD  GS S  C+  GGQCQC+PNV+GR C  CA G +GF P+ C PC+C
Sbjct: 764 ALIHQTGLACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPNGCKPCDC 823

Query: 61  PF----TAVCDSYTGK 72
                 +A CD+ TG+
Sbjct: 824 HLQGSASAFCDAITGQ 839

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 18  GSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC-PFTAVCDSYTG 71
           GSK   C+Q  GQC C   V GRRC+ C  GY+GFP CHPC C  F  +CD  TG
Sbjct: 823 GSKDTVCDQVTGQCPCHGEVSGRRCDRCLAGYFGFPSCHPCPCNRFAELCDPETG 877

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
383866057	3680	PREDICTED: laminin subunit alpha-like [M	0.705	0.018	0.676	6e-23
328793738	3544	PREDICTED: laminin subunit alpha, partia	0.705	0.018	0.647	3e-22
307199233	3663	Laminin subunit alpha [Harpegnathos salt	0.747	0.019	0.638	7e-22
380019683	3670	PREDICTED: laminin subunit alpha-like [A	0.705	0.018	0.633	1e-21
345495089	3648	PREDICTED: laminin subunit alpha-like [N	0.705	0.018	0.633	1e-21
170035629	3706	laminin subunit alpha [Culex quinquefasc	0.715	0.018	0.666	1e-21
307167492	3660	Laminin subunit alpha [Camponotus florid	0.715	0.018	0.597	2e-21
340715997	3666	PREDICTED: laminin subunit alpha-like [B	0.736	0.019	0.619	2e-20
157119736	3701	laminin A chain, putative [Aedes aegypti	0.715	0.018	0.652	2e-20
350408641	3666	PREDICTED: laminin subunit alpha-like [B	0.736	0.019	0.605	3e-20

>gi|383866057|ref|XP_003708488.1| PREDICTED: laminin subunit alpha-like [Megachile rotundata]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 60/71 (84%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T S+ + ALPC CDIDG+ SFEC++FGGQC CKPN+IGRRCE+C TG+YGFP+C PCNC
Sbjct: 1371 ITASYNNGALPCNCDIDGTISFECDKFGGQCPCKPNIIGRRCEICKTGFYGFPNCRPCNC 1430

Query: 61   PFTAVCDSYTG 71
            P TA+C+  TG
Sbjct: 1431 PSTALCEPETG 1441

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793738|ref|XP_396118.4| PREDICTED: laminin subunit alpha, partial [Apis mellifera]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 59/71 (83%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC CDI+G+ SFECE+FGGQC CKPN+IGRRCE+C  G+YGFP+C PCNC
Sbjct: 1231 LTANYNNRALPCNCDINGAISFECEKFGGQCLCKPNIIGRRCEICKMGFYGFPNCEPCNC 1290

Query: 61   PFTAVCDSYTG 71
            P TA+C+  TG
Sbjct: 1291 PSTALCEPKTG 1301

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199233|gb|EFN79905.1| Laminin subunit alpha [Harpegnathos saltator]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 59/72 (81%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC C IDGS S ECE+FGGQC C+PN+IGRRCE+C TG+YGFP C PCNC
Sbjct: 1351 LTANYNNGALPCNCIIDGSTSLECEKFGGQCPCRPNIIGRRCEICKTGFYGFPRCRPCNC 1410

Query: 61   PFTAVCDSYTGK 72
            P TA+C+S +G+
Sbjct: 1411 PTTALCESDSGR 1422

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019683|ref|XP_003693732.1| PREDICTED: laminin subunit alpha-like [Apis florea]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 58/71 (81%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC CDI+G+ SFECE+FGGQC CKPN+IGRRCE+C  G+YGFP+C PCNC
Sbjct: 1352 LTANYNNRALPCNCDINGAVSFECEKFGGQCLCKPNIIGRRCEICKMGFYGFPNCEPCNC 1411

Query: 61   PFTAVCDSYTG 71
            P  A+C+  TG
Sbjct: 1412 PSRALCEPKTG 1422

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495089|ref|XP_001603629.2| PREDICTED: laminin subunit alpha-like [Nasonia vitripennis]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++   ALPC CDIDG++SFECE+FGGQC CK N+IGRRC +C TGY+GFP+C PCNC
Sbjct: 1365 LTTNYNSGALPCSCDIDGTRSFECEKFGGQCPCKDNIIGRRCNICKTGYFGFPNCRPCNC 1424

Query: 61   PFTAVCDSYTG 71
            P  A+C+  TG
Sbjct: 1425 PSAAICEPETG 1435

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035629|ref|XP_001845671.1| laminin subunit alpha [Culex quinquefasciatus] gi|167877644|gb|EDS41027.1| laminin subunit alpha [Culex quinquefasciatus]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 56/72 (77%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T  +   ALPC CD  GS SFECEQFGGQCQCKP++IGR+CE C TGYYGFPDC PC+C
Sbjct: 1366 LTADYNSGALPCNCDYYGSTSFECEQFGGQCQCKPHIIGRQCEACKTGYYGFPDCKPCDC 1425

Query: 61   PFTAVCDSYTGK 72
            P TA+C   TG+
Sbjct: 1426 PSTALCQKDTGE 1437

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167492|gb|EFN61065.1| Laminin subunit alpha [Camponotus floridanus]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 60/72 (83%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC CD++GS SFEC++FGGQC C+PN+IGRRCE+C TG+YG+P C PCNC
Sbjct: 1353 LTANYNNGALPCNCDVEGSTSFECDKFGGQCPCRPNIIGRRCEICRTGFYGYPRCRPCNC 1412

Query: 61   PFTAVCDSYTGK 72
            P TA+C+  +G+
Sbjct: 1413 PTTALCEPNSGR 1424

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715997|ref|XP_003396491.1| PREDICTED: laminin subunit alpha-like [Bombus terrestris]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 58/71 (81%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC C+I+GS S ECE+FGGQC CK N+IGRRCE+C TG+YGFP+C PC+C
Sbjct: 1352 LTANYNNRALPCNCNINGSISLECEKFGGQCPCKANIIGRRCEICKTGFYGFPNCKPCSC 1411

Query: 61   PFTAVCDSYTG 71
            P TA+C+  TG
Sbjct: 1412 PSTALCEPETG 1422

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119736|ref|XP_001659481.1| laminin A chain, putative [Aedes aegypti] gi|108875197|gb|EAT39422.1| AAEL008773-PA [Aedes aegypti]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 54/72 (75%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T  +   ALPC CD  GS SFECEQFGGQC CKP +IGR+CE C TGYYGFPDC PC+C
Sbjct: 1364 LTADYNTGALPCNCDYYGSNSFECEQFGGQCNCKPFIIGRQCEACKTGYYGFPDCKPCDC 1423

Query: 61   PFTAVCDSYTGK 72
            P TA+C   TG+
Sbjct: 1424 PSTALCQKDTGE 1435

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408641|ref|XP_003488468.1| PREDICTED: laminin subunit alpha-like [Bombus impatiens]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 1    MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
            +T ++ + ALPC C+I+GS S ECE+FGGQC C+ N+IGRRCE+C TG+YGFP+C PC+C
Sbjct: 1352 LTANYNNRALPCNCNINGSISLECEKFGGQCPCRANIIGRRCEICKTGFYGFPNCKPCSC 1411

Query: 61   PFTAVCDSYTG 71
            P TA+C+  TG
Sbjct: 1412 PSTALCEPETG 1422

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0002526	3712	LanA "Laminin A" [Drosophila m	0.757	0.019	0.597	2.1e-20
WB|WBGene00001328	3704	epi-1 [Caenorhabditis elegans	0.757	0.019	0.569	1.3e-18
ZFIN|ZDB-GENE-030131-9823	3664	lama5 "laminin, alpha 5" [Dani	0.705	0.018	0.573	5.7e-18
UNIPROTKB|F1NZZ2	3668	LAMA5 "Uncharacterized protein	0.747	0.019	0.527	9.3e-18
MGI|MGI:99916	1799	Lamb2 "laminin, beta 2" [Mus m	0.673	0.035	0.571	2.6e-16
UNIPROTKB|F1NQ51	3356	LAMA3 "Uncharacterized protein	0.726	0.020	0.535	3.3e-16
RGD|2988	1801	Lamb2 "laminin, beta 2" [Rattu	0.673	0.035	0.571	4.3e-16
UNIPROTKB|Q16787	3333	LAMA3 "Laminin subunit alpha-3	0.726	0.020	0.507	1.1e-15
UNIPROTKB|E1BDK6	1802	LAMB2 "Uncharacterized protein	0.673	0.035	0.557	1.1e-15
MGI|MGI:105382	3718	Lama5 "laminin, alpha 5" [Mus	0.873	0.022	0.460	2e-15

FB|FBgn0002526 LanA "Laminin A" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query:     1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
             +T  +   ALPC CD  GS SFEC  FGGQCQCKPNVI R C  C + YYGFPDC PC C
Sbjct:  1364 LTADYNSGALPCNCDYAGSTSFECHPFGGQCQCKPNVIERTCGACRSRYYGFPDCKPCKC 1423

Query:    61 PFTAVCDSYTGK 72
             P +A+C+  TG+
Sbjct:  1424 PNSAMCEPTTGE 1435

GO:0005604 "basement membrane" evidence=ISS;NAS;IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005605 "basal lamina" evidence=IDA

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0009887 "organ morphogenesis" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

GO:0048598 "embryonic morphogenesis" evidence=NAS

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007411 "axon guidance" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0036062 "presynaptic periactive zone" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

WB|WBGene00001328 epi-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 41/72 (56%), Positives = 48/72 (66%)

Query:     1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
             +T  F   AL C C   GS+SF+CEQ+GGQC+CKP VIGRRCE CA GYY FP+C  C C
Sbjct:  1404 LTTDFNAAALSCDCVAQGSESFQCEQYGGQCKCKPGVIGRRCERCAPGYYNFPECIKCQC 1463

Query:    61 PFTAVCDSYTGK 72
                  CD  TG+
Sbjct:  1464 NAGQQCDERTGQ 1475

GO:0005604 "basement membrane" evidence=IEA;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

ZFIN|ZDB-GENE-030131-9823 lama5 "laminin, alpha 5" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query:     5 FLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTA 64
             F + A+PC C   G++S  CE FGGQC+C+PNVIGR C  CATGYYGFP+C PCNC  + 
Sbjct:  1414 FNNGAVPCGCHEVGAESDTCESFGGQCRCRPNVIGRDCSQCATGYYGFPNCRPCNCG-SR 1472

Query:    65 VCDSYTGK 72
             +C+  TG+
Sbjct:  1473 LCEPVTGE 1480

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0035141 "medial fin morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035138 "pectoral fin morphogenesis" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

UNIPROTKB|F1NZZ2 LAMA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query:     1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
             +++ + + A PCQC   G++  +CE FGGQC CK NVIGR C  CATGY+GFP+C PC+C
Sbjct:  1408 LSLFYNNGAQPCQCHEAGARGSQCEPFGGQCPCKSNVIGRECSRCATGYWGFPNCRPCDC 1467

Query:    61 PFTAVCDSYTGK 72
               T +CD  TG+
Sbjct:  1468 G-TRLCDEVTGQ 1478

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

MGI|MGI:99916 Lamb2 "laminin, beta 2" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 40/70 (57%), Positives = 49/70 (70%)

Query:     9 ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF-P-DCHPCNC-P---F 62
             ALPCQCD  GS S EC   GGQC+CKP V+GRRC++CATGYYGF P  C  C C P    
Sbjct:   781 ALPCQCDPQGSLSSECSPHGGQCRCKPGVVGRRCDVCATGYYGFGPAGCQACQCSPDGAL 840

Query:    63 TAVCDSYTGK 72
             +A+C+  +G+
Sbjct:   841 SALCEGTSGQ 850

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IGI

GO:0005178 "integrin binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0005608 "laminin-3 complex" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0007601 "visual perception" evidence=IGI

GO:0014002 "astrocyte development" evidence=IGI

GO:0014044 "Schwann cell development" evidence=IDA

GO:0031175 "neuron projection development" evidence=IDA

GO:0043256 "laminin complex" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0048677 "axon extension involved in regeneration" evidence=IMP

GO:0050808 "synapse organization" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IGI

GO:0072249 "metanephric glomerular visceral epithelial cell development" evidence=IMP

GO:0072274 "metanephric glomerular basement membrane development" evidence=IMP

UNIPROTKB|F1NQ51 LAMA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 38/71 (53%), Positives = 46/71 (64%)

Query:     3 ISFLHE-ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCP 61
             ++F +  A+PC C  +GS S  C   GGQC C+PNVIGR+C  C TGYYGFP C  CNC 
Sbjct:  1267 VAFYNNGAVPCNCHSEGSMSPTCSPLGGQCICRPNVIGRQCSRCQTGYYGFPSCKLCNCG 1326

Query:    62 FTAVCDSYTGK 72
                +CD  TGK
Sbjct:  1327 -QRLCDDLTGK 1336

GO:0005102 "receptor binding" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005610 "laminin-5 complex" evidence=IEA

RGD|2988 Lamb2 "laminin, beta 2" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 40/70 (57%), Positives = 48/70 (68%)

Query:     9 ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF-P-DCHPCNC-P---F 62
             ALPCQCD  GS S EC   GGQC+CKP V+GRRC+ CATGYYGF P  C  C C P    
Sbjct:   783 ALPCQCDPQGSLSSECNPHGGQCRCKPGVVGRRCDACATGYYGFGPAGCQACQCSPDGAL 842

Query:    63 TAVCDSYTGK 72
             +A+C+  +G+
Sbjct:   843 SALCEGTSGQ 852

GO:0000904 "cell morphogenesis involved in differentiation" evidence=ISO

GO:0005178 "integrin binding" evidence=ISO

GO:0005604 "basement membrane" evidence=IEA;ISO

GO:0005605 "basal lamina" evidence=ISO

GO:0005608 "laminin-3 complex" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO

GO:0007528 "neuromuscular junction development" evidence=ISO

GO:0007601 "visual perception" evidence=ISO

GO:0014002 "astrocyte development" evidence=ISO

GO:0014044 "Schwann cell development" evidence=ISO

GO:0031175 "neuron projection development" evidence=ISO

GO:0043256 "laminin complex" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0048677 "axon extension involved in regeneration" evidence=ISO

GO:0050808 "synapse organization" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO

GO:0072249 "metanephric glomerular visceral epithelial cell development" evidence=ISO

GO:0072274 "metanephric glomerular basement membrane development" evidence=ISO

GO:0031012 "extracellular matrix" evidence=ISO

UNIPROTKB|Q16787 LAMA3 "Laminin subunit alpha-3" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 36/71 (50%), Positives = 48/71 (67%)

Query:     3 ISFLHE-ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCP 61
             ++F H+ ALPC+C   G+    C   GGQC C+PNVIGR+C  CATG+YGFP C PC+C 
Sbjct:  1256 VAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCG 1315

Query:    62 FTAVCDSYTGK 72
                +C+  TG+
Sbjct:  1316 -RRLCEEMTGQ 1325

GO:0005102 "receptor binding" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005610 "laminin-5 complex" evidence=IEA

GO:0008544 "epidermis development" evidence=TAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0005604 "basement membrane" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0031581 "hemidesmosome assembly" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

UNIPROTKB|E1BDK6 LAMB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 39/70 (55%), Positives = 48/70 (68%)

Query:     9 ALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF-PD-CHPCNC-P---F 62
             ALPCQCD  GS S EC   GGQC+CKP V+GRRC++CA GYYGF P  C  C C P    
Sbjct:   784 ALPCQCDPQGSLSSECNPHGGQCRCKPAVVGRRCDLCAPGYYGFGPTGCQACQCSPEGAL 843

Query:    63 TAVCDSYTGK 72
             + +CD+ +G+
Sbjct:   844 SGLCDATSGQ 853

GO:0072274 "metanephric glomerular basement membrane development" evidence=IEA

GO:0072249 "metanephric glomerular visceral epithelial cell development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0048677 "axon extension involved in regeneration" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0014044 "Schwann cell development" evidence=IEA

GO:0014002 "astrocyte development" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005608 "laminin-3 complex" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

MGI|MGI:105382 Lama5 "laminin, alpha 5" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query:     1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
             +++ + + ALPC C   G+ S  CE FGGQC C+ +VIGR C  CATGY+GFP+C PC+C
Sbjct:  1432 LSLFYNNGALPCGCHEVGAVSPTCEPFGGQCPCRGHVIGRDCSRCATGYWGFPNCRPCDC 1491

Query:    61 PFTAVCDSYTGKLAQVLIQVVTFPNYPSC 89
                 +CD  TG   Q +    T P  P C
Sbjct:  1492 G-ARLCDELTG---QCICPPRTVP--PDC 1514

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0001942 "hair follicle development" evidence=IMP

GO:0005102 "receptor binding" evidence=IEA

GO:0005178 "integrin binding" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0005610 "laminin-5 complex" evidence=ISO

GO:0005615 "extracellular space" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO

GO:0007517 "muscle organ development" evidence=IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0016477 "cell migration" evidence=ISO

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IMP

GO:0043259 "laminin-10 complex" evidence=ISO;IPI

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IMP

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q00174	LAMA_DROME	No assigned EC number	0.5972	0.7473	0.0191	yes	N/A
Q21313	EPI1_CAEEL	No assigned EC number	0.5694	0.7157	0.0185	yes	N/A
P15800	LAMB2_RAT	No assigned EC number	0.5428	0.6736	0.0355	yes	N/A
Q16787	LAMA3_HUMAN	No assigned EC number	0.5070	0.7263	0.0207	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
cd00055	50	cd00055, EGF_Lam, Laminin-type epidermal growth fa	2e-12
pfam00053	49	pfam00053, Laminin_EGF, Laminin EGF-like (Domains	3e-11
smart00180	46	smart00180, EGF_Lam, Laminin-type epidermal growth	1e-10

>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

 Score = 55.8 bits (135), Expect = 2e-12
 Identities = 25/44 (56%), Positives = 30/44 (68%)

Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD 54
          PC C+  GS S +C+   GQC+CKPN  GRRC+ CA GYYG P 
Sbjct: 1  PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44

Length = 50

>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V)

 Score = 53.1 bits (128), Expect = 3e-11
 Identities = 23/49 (46%), Positives = 26/49 (53%)

Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
          C C+  GS S  C+   GQC CKP V GR C+ C  GYYG P      C
Sbjct: 1  CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49

This family is like pfam00008 but has 8 conserved cysteines instead of six. Length = 49

>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like domai

 Score = 51.5 bits (124), Expect = 1e-10
 Identities = 25/42 (59%), Positives = 28/42 (66%)

Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP 53
          C CD  GS S  C+   GQC+CKPNV GRRC+ CA GYYG  
Sbjct: 1  CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42

Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG0994|consensus	1758		99.77
KOG0994|consensus	1758		99.76
KOG3512|consensus	592		99.47
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	99.2
KOG1836|consensus	1705		99.19
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	99.15
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	99.12
KOG1836|consensus	1705		99.03
KOG3512|consensus	592		98.64
KOG4289|consensus	2531		98.49
KOG4289|consensus	2531		98.47
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	98.36
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	98.18
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	98.1
KOG1388|consensus	217		98.09
KOG1225|consensus	525		97.44
smart00051	63	DSL delta serrate ligand.	96.44
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	95.98
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.83
smart00051	63	DSL delta serrate ligand.	95.5
KOG4260|consensus	350		94.99
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	94.59
KOG4260|consensus	350		94.22
KOG1226|consensus	783		93.53
KOG1225|consensus	525		93.1
KOG3509|consensus	964		89.85
KOG3509|consensus	964		86.08
KOG1226|consensus	783		86.03
KOG1219|consensus	4289		82.06
KOG1218|consensus	316		80.44

>KOG0994|consensus

Probab=99.77  E-value=3.1e-19  Score=144.47  Aligned_cols=91  Identities=40%  Similarity=0.803  Sum_probs=85.7

Q ss_pred             CCccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC--CceeccCCCC----CCCCCCCCcee
Q psy4720           1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNCPFT----AVCDSYTGKLA   74 (95)
Q Consensus         1 ~~~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~--~C~~C~C~~~----~~C~~~tG~C~   74 (95)
                      |+|+.+++=..|+|++.||+++.|++..|+|.|||++.|++|++|+||+|||.  +|++|+|+..    ..||.+||||.
T Consensus       754 lsa~l~n~a~~CnCnptGSlS~vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~  833 (1758)
T KOG0994|consen  754 LSALLHNGASMCNCNPTGSLSSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQ  833 (1758)
T ss_pred             HHHHHhcCccccccCCCccccccccCCCceecccCccccccccccCCcccCcCCccCcccccccccccccccccccccee
Confidence            67888999999999999999999999999999999999999999999999985  8999999975    47999999999


Q ss_pred             ccCCCccccCCCCcCCCCC
Q psy4720          75 QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        75 c~~~~~~~~~~c~~c~~~~   93 (95)
                      |..  ++-|..|++|++||
T Consensus       834 C~~--g~ygrqCnqCqpG~  850 (1758)
T KOG0994|consen  834 CRP--GTYGRQCNQCQPGY  850 (1758)
T ss_pred             ecc--ccchhhccccCCCc
Confidence            988  89999999999998

>KOG0994|consensus

Probab=99.76  E-value=4.2e-19  Score=143.74  Aligned_cols=90  Identities=34%  Similarity=0.729  Sum_probs=84.1

Q ss_pred             ccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCC-CCCCCCCCcee-ccCCCc
Q psy4720           3 ISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT-AVCDSYTGKLA-QVLIQV   80 (95)
Q Consensus         3 ~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~-~~C~~~tG~C~-c~~~~~   80 (95)
                      +|.+.+|++|+|+..|+++..|+.++|+|.|++|+.|+.|++|.|||||||.|++|+|+.+ ..||+.||.|+ |..  .
T Consensus       804 GFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD--~  881 (1758)
T KOG0994|consen  804 GFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQD--S  881 (1758)
T ss_pred             CcCCccCccccccccccccccccccccceeeccccchhhccccCCCccCCCcCccccccCcccccCccccccccccc--c
Confidence            5778999999999999999999999999999999999999999999999999999999998 58999999998 454  7


Q ss_pred             cccCCCCcCCCCCC
Q psy4720          81 VTFPNYPSCKLWYN   94 (95)
Q Consensus        81 ~~~~~c~~c~~~~~   94 (95)
                      .+|.+|++|..||-
T Consensus       882 T~G~~CdrCl~Gyy  895 (1758)
T KOG0994|consen  882 TTGHSCDRCLDGYY  895 (1758)
T ss_pred             ccccchhhhhcccc
Confidence            89999999999983

>KOG3512|consensus

Probab=99.47  E-value=5.3e-14  Score=106.70  Aligned_cols=91  Identities=30%  Similarity=0.616  Sum_probs=76.6

Q ss_pred             CccCCCCCccCCCCCCCCCCC---cc-----ccCCcee-ecCCCccCCCCCCCCCCccCCC--------CceeccCCCC-
Q psy4720           2 TISFLHEALPCQCDIDGSKSF---EC-----EQFGGQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCPFT-   63 (95)
Q Consensus         2 ~~~~~~~C~~C~C~~~gs~~~---~C-----~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~--------~C~~C~C~~~-   63 (95)
                      +++..+.|.+|+|+++++.-.   .+     ....|.| .|++++.|++|..|.+|||.++        .|+.|+|++. 
T Consensus       324 T~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVG  403 (592)
T KOG3512|consen  324 TALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVG  403 (592)
T ss_pred             ccCCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccc
Confidence            678889999999999987310   01     1224688 6999999999999999999865        5899999985 


Q ss_pred             ---CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720          64 ---AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        64 ---~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                         ..|+..||||+|+.  +|+|..|++|.++|.
T Consensus       404 s~gktCNq~tGqCpCke--GvtG~tCnrCa~gyq  435 (592)
T KOG3512|consen  404 SAGKTCNQTTGQCPCKE--GVTGLTCNRCAPGYQ  435 (592)
T ss_pred             cccccccccCCcccCCC--CCcccccccccchhh
Confidence               47999999999999  999999999999983

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=99.20  E-value=2.9e-11  Score=66.55  Aligned_cols=43  Identities=58%  Similarity=1.328  Sum_probs=40.4

Q ss_pred             cCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC
Q psy4720          11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP   53 (95)
Q Consensus        11 ~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~   53 (95)
                      +|.|++.+++...|++.+|+|.|+++++|++|++|++|||+++
T Consensus         1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~   43 (50)
T cd00055           1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP   43 (50)
T ss_pred             CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCC
Confidence            4889999998888999999999999999999999999999976

>KOG1836|consensus

Probab=99.19  E-value=3.4e-11  Score=102.34  Aligned_cols=86  Identities=33%  Similarity=0.693  Sum_probs=80.4

Q ss_pred             CCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC--CceeccCCCCC----CCCCCCCceeccCCC
Q psy4720           6 LHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNCPFTA----VCDSYTGKLAQVLIQ   79 (95)
Q Consensus         6 ~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~--~C~~C~C~~~~----~C~~~tG~C~c~~~~   79 (95)
                      ..+|.+|+|++.|++...|+..+|+|.|+++++|.+|++|.+++|++.  .|++|.|.+.+    .|++.+|+|+|+.  
T Consensus       936 ~~gC~~c~c~~~gs~~~~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~-- 1013 (1705)
T KOG1836|consen  936 GVGCEPCNCDPTGSESSDCDVGTGQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRP-- 1013 (1705)
T ss_pred             CCCcccccccccccccccccccCCceeeecCccccccCccccCcccccccCCcceecccCCcccceecccCCeeeecC--
Confidence            458999999999999999999999999999999999999999999986  79999999875    5999999999999  


Q ss_pred             ccccCCCCcCCCCC
Q psy4720          80 VVTFPNYPSCKLWY   93 (95)
Q Consensus        80 ~~~~~~c~~c~~~~   93 (95)
                      +++|..|+.|+.++
T Consensus      1014 ~~~g~~c~~c~~~~ 1027 (1705)
T KOG1836|consen 1014 GFEGRRCDQCEEGF 1027 (1705)
T ss_pred             CCCCcccccccCCc
Confidence            99999999998876

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=99.15  E-value=5.9e-11  Score=64.38  Aligned_cols=40  Identities=63%  Similarity=1.352  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccC
Q psy4720          12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYG   51 (95)
Q Consensus        12 C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g   51 (95)
                      |+|++.|++...|++.+|+|.|+++++|++|++|++||||
T Consensus         1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g   40 (46)
T smart00180        1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG   40 (46)
T ss_pred             CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence            6788888887789999999999999999999999999998

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=99.12  E-value=3.2e-11  Score=66.02  Aligned_cols=43  Identities=47%  Similarity=1.198  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCC
Q psy4720          12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD   54 (95)
Q Consensus        12 C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~   54 (95)
                      |+|++.++....|++.+|+|.|+++|+|++|++|++|||+++.
T Consensus         1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~   43 (49)
T PF00053_consen    1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS   43 (49)
T ss_dssp             ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred             CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence            6789999888899999999999999999999999999999864

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>KOG1836|consensus

Probab=99.03  E-value=5.4e-10  Score=95.18  Aligned_cols=87  Identities=36%  Similarity=0.748  Sum_probs=79.6

Q ss_pred             CCCCCccCCCCCCCCCC--CccccCCceeecCCCccCCCCCCCCCCccCCC---CceeccCCCC----CCCCCCCCceec
Q psy4720           5 FLHEALPCQCDIDGSKS--FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP---DCHPCNCPFT----AVCDSYTGKLAQ   75 (95)
Q Consensus         5 ~~~~C~~C~C~~~gs~~--~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C~~~----~~C~~~tG~C~c   75 (95)
                      ..+.|.+|.|++.|++.  ..|++.+|+|.|++++.|..|..|.+|||++.   .|.+|+|+..    ..|+..||||.|
T Consensus       884 p~~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~~tGqc~c  963 (1705)
T KOG1836|consen  884 PEDKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDVGTGQCYC  963 (1705)
T ss_pred             cCCccccccCccCCcccccccCCCcccceeccCCCCccccccccccccccCCCCCcccccccccccccccccccCCceee
Confidence            35679999999999985  67999999999999999999999999999987   8999999974    479999999999


Q ss_pred             cCCCccccCCCCcCCCCC
Q psy4720          76 VLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        76 ~~~~~~~~~~c~~c~~~~   93 (95)
                      ++  +|+|.+|++|..++
T Consensus       964 ~~--gVtgqrc~qc~~~~  979 (1705)
T KOG1836|consen  964 RP--GVTGQRCDQCETYH  979 (1705)
T ss_pred             ec--CccccccCccccCc
Confidence            99  99999999999874

>KOG3512|consensus

Probab=98.64  E-value=1.2e-08  Score=78.01  Aligned_cols=48  Identities=38%  Similarity=0.755  Sum_probs=45.0

Q ss_pred             CCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCC
Q psy4720           5 FLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF   52 (95)
Q Consensus         5 ~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~   52 (95)
                      .-+.|+.|+|++.|++...|+..+|+|.|++|++|..|++|++||+..
T Consensus       390 hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqs  437 (592)
T KOG3512|consen  390 HRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQS  437 (592)
T ss_pred             hhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcc
Confidence            356799999999999999999999999999999999999999999974

>KOG4289|consensus

Probab=98.49  E-value=1.9e-07  Score=78.72  Aligned_cols=74  Identities=27%  Similarity=0.578  Sum_probs=62.2

Q ss_pred             CCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCC---CCCCCCCCceeccCCCccc
Q psy4720           6 LHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT---AVCDSYTGKLAQVLIQVVT   82 (95)
Q Consensus         6 ~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~---~~C~~~tG~C~c~~~~~~~   82 (95)
                      +..|.+|+|......+..|+..+|+|.||+++.-+.           ..|.+|+|..+   ..|+ .+|||.|++  ++.
T Consensus      1767 ~P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~~~-----------~~Cl~CdC~~Gs~Sr~C~-adGqC~C~p--gai 1832 (2531)
T KOG4289|consen 1767 FPTCGPCNCAVSKGFDPDCNKTNGQCQCKENHYRPI-----------GSCLPCDCYFGSDSRECD-ADGQCPCKP--GAI 1832 (2531)
T ss_pred             CCCccCccccccCCCCCCccccCcceeeccccccCC-----------CcceeeccccCCCccccc-CCCcCCCCC--ccc
Confidence            678999999988888889999999999998865321           25999999864   4799 899999999  999


Q ss_pred             cCCCCcCCCCC
Q psy4720          83 FPNYPSCKLWY   93 (95)
Q Consensus        83 ~~~c~~c~~~~   93 (95)
                      |.+|++|..-|
T Consensus      1833 GRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1833 GRQCDRCDNPF 1843 (2531)
T ss_pred             cccccccCChh
Confidence            99999997543

>KOG4289|consensus

Probab=98.47  E-value=2.7e-07  Score=77.87  Aligned_cols=64  Identities=30%  Similarity=0.803  Sum_probs=52.4

Q ss_pred             ceeecCCCccCCCCC-----CCCCCccCCCCceeccCCCC----CCCCCCCCceeccCCCccccCCCCcCCCC
Q psy4720          29 GQCQCKPNVIGRRCE-----MCATGYYGFPDCHPCNCPFT----AVCDSYTGKLAQVLIQVVTFPNYPSCKLW   92 (95)
Q Consensus        29 G~C~C~~g~~G~~C~-----~C~~G~~g~~~C~~C~C~~~----~~C~~~tG~C~c~~~~~~~~~~c~~c~~~   92 (95)
                      -.|.|++++.|+.|+     .|+.||||+|.|.+|+|.-.    ..||..+|+|.||..+--.-..|-.|..+
T Consensus      1739 Y~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~~~~~Cl~CdC~ 1811 (2531)
T KOG4289|consen 1739 YTCECPPGYTGPYCELRADQPCPRGWWGFPTCGPCNCAVSKGFDPDCNKTNGQCQCKENHYRPIGSCLPCDCY 1811 (2531)
T ss_pred             eeEECCCcccCcchhhhccCCCCCcccCCCCccCccccccCCCCCCccccCcceeeccccccCCCcceeeccc
Confidence            378999999999997     69999999999999999964    57999999999988654333346666543

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=98.36  E-value=5e-07  Score=49.52  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             eccCCCCC----CCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720          57 PCNCPFTA----VCDSYTGKLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        57 ~C~C~~~~----~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                      +|+|+..+    .|++.+|+|.|+.  +++|.+|++|+++|.
T Consensus         1 ~C~C~~~g~~~~~C~~~~G~C~C~~--~~~G~~C~~C~~g~~   40 (50)
T cd00055           1 PCDCNGHGSLSGQCDPGTGQCECKP--NTTGRRCDRCAPGYY   40 (50)
T ss_pred             CCcCcCCCCCCccccCCCCEEeCCC--cCCCCCCCCCCCCCc
Confidence            36777653    5999999999998  999999999999883

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=98.18  E-value=2.1e-06  Score=46.32  Aligned_cols=29  Identities=28%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720          64 AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        64 ~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                      ..|++++|+|.|+.  +++|++|++|+++|.
T Consensus        11 ~~C~~~~G~C~C~~--~~~G~~C~~C~~g~~   39 (46)
T smart00180       11 GTCDPDTGQCECKP--NVTGRRCDRCAPGYY   39 (46)
T ss_pred             CcccCCCCEEECCC--CCCCCCCCcCCCCcC
Confidence            46999999999998  999999999999984

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=98.10  E-value=8e-07  Score=48.35  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=27.5

Q ss_pred             ccCCCCC----CCCCCCCceeccCCCccccCCCCcCCCCC
Q psy4720          58 CNCPFTA----VCDSYTGKLAQVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        58 C~C~~~~----~C~~~tG~C~c~~~~~~~~~~c~~c~~~~   93 (95)
                      |+|+..+    .|++.+|+|.|+.  +++|++|++|+++|
T Consensus         1 C~C~~~~~~~~~C~~~~G~C~C~~--~~~G~~C~~C~~g~   38 (49)
T PF00053_consen    1 CDCNPHGSSSQTCDPSTGQCVCKP--GTTGPRCDQCKPGY   38 (49)
T ss_dssp             ESSTTCCBCCSSEEETCEEESBST--TEESTTS-EE-TTE
T ss_pred             CcCcCCCCCCCcccCCCCEEeccc--cccCCcCcCCCCcc
Confidence            4566543    7999999999998  99999999999987

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>KOG1388|consensus

Probab=98.09  E-value=1.7e-06  Score=60.34  Aligned_cols=84  Identities=29%  Similarity=0.600  Sum_probs=65.8

Q ss_pred             ccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC---CceeccCCCC-CCCCCCCCceeccCC
Q psy4720           3 ISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP---DCHPCNCPFT-AVCDSYTGKLAQVLI   78 (95)
Q Consensus         3 ~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C~~~-~~C~~~tG~C~c~~~   78 (95)
                      +|++-.|..|.|+..+.    |.....--.|..+..|.+|+.|..||||+.   .|++|+|+.. ..|++.+|+|.|.. 
T Consensus        43 ~W~fl~cP~~~cNGh~~----c~t~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~~~~~~~~~~c~c~~-  117 (217)
T KOG1388|consen   43 IWRFLFCPLCQCNGHSD----CNTQHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGASACVTLTGKCFCTT-  117 (217)
T ss_pred             hhhhhcChHHHhcCCCC----cccceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCeeeeeccCCcccccc-
Confidence            56666788888984443    443333237999999999999999999943   7999999986 47999999999854 


Q ss_pred             CccccCCCCcCCC
Q psy4720          79 QVVTFPNYPSCKL   91 (95)
Q Consensus        79 ~~~~~~~c~~c~~   91 (95)
                      .+|.|..|++|+.
T Consensus       118 kgvvgd~c~~~e~  130 (217)
T KOG1388|consen  118 KGVVGDLCPKCEV  130 (217)
T ss_pred             ceEecccCccccc
Confidence            3788889999964

>KOG1225|consensus

Probab=97.44  E-value=0.0005  Score=53.82  Aligned_cols=57  Identities=28%  Similarity=0.567  Sum_probs=41.9

Q ss_pred             CCceeecCCCccCCCCCC-------------------CCCCccCCCCc----eeccCCCCCCCCCCCCceeccCCCcccc
Q psy4720          27 FGGQCQCKPNVIGRRCEM-------------------CATGYYGFPDC----HPCNCPFTAVCDSYTGKLAQVLIQVVTF   83 (95)
Q Consensus        27 ~~G~C~C~~g~~G~~C~~-------------------C~~G~~g~~~C----~~C~C~~~~~C~~~tG~C~c~~~~~~~~   83 (95)
                      +.|+|+|+++|+|..|+.                   |.+||.|.. |    -+=+|++++.|.  .|+|.|..  +++|
T Consensus       263 ~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~d-Cs~~~cpadC~g~G~Ci--~G~C~C~~--Gy~G  337 (525)
T KOG1225|consen  263 VEGRCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKD-CSIRRCPADCSGHGKCI--DGECLCDE--GYTG  337 (525)
T ss_pred             eCCeEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCccccc-cccccCCccCCCCCccc--CCceEeCC--CCcC
Confidence            358999999999999973                   444555522 2    123566778888  89999988  8888


Q ss_pred             CCCCc
Q psy4720          84 PNYPS   88 (95)
Q Consensus        84 ~~c~~   88 (95)
                      ..|.+
T Consensus       338 ~~C~~  342 (525)
T KOG1225|consen  338 ELCIQ  342 (525)
T ss_pred             Ccccc
Confidence            88887

>smart00051 DSL delta serrate ligand

Probab=96.44  E-value=0.0052  Score=35.21  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             CCCCccCCCCceeccC----CCCCCCCCCCCceeccCCCccccCCC
Q psy4720          45 CATGYYGFPDCHPCNC----PFTAVCDSYTGKLAQVLIQVVTFPNY   86 (95)
Q Consensus        45 C~~G~~g~~~C~~C~C----~~~~~C~~~tG~C~c~~~~~~~~~~c   86 (95)
                      |.++|||...-+.|.+    ..+..||+ +|++.|.+  ++.|++|
T Consensus        21 C~~~~yG~~C~~~C~~~~d~~~~~~Cd~-~G~~~C~~--Gw~G~~C   63 (63)
T smart00051       21 CDENYYGEGCNKFCRPRDDFFGHYTCDE-NGNKGCLE--GWMGPYC   63 (63)
T ss_pred             CCCCCcCCccCCEeCcCccccCCccCCc-CCCEecCC--CCcCCCC
Confidence            4455555332234544    33467997 79999998  8998876

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=95.98  E-value=0.0047  Score=24.84  Aligned_cols=13  Identities=46%  Similarity=1.214  Sum_probs=10.1

Q ss_pred             eeecCCCccCCCC
Q psy4720          30 QCQCKPNVIGRRC   42 (95)
Q Consensus        30 ~C~C~~g~~G~~C   42 (95)
                      .|+|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4889999999876

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.83  E-value=0.01  Score=29.55  Aligned_cols=25  Identities=32%  Similarity=0.881  Sum_probs=20.1

Q ss_pred             CCCCCCCCCccccCCceeecCCCccCCCC
Q psy4720          14 CDIDGSKSFECEQFGGQCQCKPNVIGRRC   42 (95)
Q Consensus        14 C~~~gs~~~~C~~~~G~C~C~~g~~G~~C   42 (95)
                      |..+|.    |....++|+|.++|+|+.|
T Consensus         8 C~~~G~----C~~~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    8 CSGHGT----CVSPCGRCVCDSGYTGPDC   32 (32)
T ss_pred             cCCCCE----EeCCCCEEECCCCCcCCCC
Confidence            566664    8776799999999999876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>smart00051 DSL delta serrate ligand

Probab=95.50  E-value=0.02  Score=32.78  Aligned_cols=38  Identities=18%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             cCCCCC-ccCCCCCCCCCCCccccCCceeecCCCccCCCC
Q psy4720           4 SFLHEA-LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRC   42 (95)
Q Consensus         4 ~~~~~C-~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C   42 (95)
                      +|...| +.|.+......+..|++ .|.++|.+||.|+.|
T Consensus        25 ~yG~~C~~~C~~~~d~~~~~~Cd~-~G~~~C~~Gw~G~~C   63 (63)
T smart00051       25 YYGEGCNKFCRPRDDFFGHYTCDE-NGNKGCLEGWMGPYC   63 (63)
T ss_pred             CcCCccCCEeCcCccccCCccCCc-CCCEecCCCCcCCCC
Confidence            345555 33443221222345776 588888888888765

>KOG4260|consensus

Probab=94.99  E-value=0.022  Score=41.73  Aligned_cols=52  Identities=27%  Similarity=0.446  Sum_probs=35.4

Q ss_pred             cCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCC-----CCCceeccCCCccccCCCCcCCCCC
Q psy4720          33 CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDS-----YTGKLAQVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        33 C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~-----~tG~C~c~~~~~~~~~~c~~c~~~~   93 (95)
                      |++|+.|+.|..|+-|.-     ++  |+.++.|+-     -+|.|.|..  +.+|+.|..|..+|
T Consensus       132 Cp~gtyGpdCl~Cpggse-----r~--C~GnG~C~GdGsR~GsGkCkC~~--GY~Gp~C~~Cg~ey  188 (350)
T KOG4260|consen  132 CPDGTYGPDCLQCPGGSE-----RP--CFGNGSCHGDGSREGSGKCKCET--GYTGPLCRYCGIEY  188 (350)
T ss_pred             cCCCCcCCccccCCCCCc-----CC--cCCCCcccCCCCCCCCCcccccC--CCCCccccccchHH
Confidence            666777777766654322     22  455555543     568888887  99999999998876

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.59  E-value=0.03  Score=27.84  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCCCceeccCCCccccCCC
Q psy4720          60 CPFTAVCDSYTGKLAQVLIQVVTFPNY   86 (95)
Q Consensus        60 C~~~~~C~~~tG~C~c~~~~~~~~~~c   86 (95)
                      |++++.|+..+|+|.|..  ++.|+.|
T Consensus         8 C~~~G~C~~~~g~C~C~~--g~~G~~C   32 (32)
T PF07974_consen    8 CSGHGTCVSPCGRCVCDS--GYTGPDC   32 (32)
T ss_pred             cCCCCEEeCCCCEEECCC--CCcCCCC
Confidence            667788998889999988  7888765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG4260|consensus

Probab=94.22  E-value=0.039  Score=40.43  Aligned_cols=49  Identities=24%  Similarity=0.606  Sum_probs=35.7

Q ss_pred             cCCCCCccC------CCCCCCCCCC-ccccCCceeecCCCccCCCCCCCCCCccCC
Q psy4720           4 SFLHEALPC------QCDIDGSKSF-ECEQFGGQCQCKPNVIGRRCEMCATGYYGF   52 (95)
Q Consensus         4 ~~~~~C~~C------~C~~~gs~~~-~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~   52 (95)
                      -|...|++|      .|...|+.+. .-..-+|.|.|.+||+|+.|..|.++||-.
T Consensus       136 tyGpdCl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes  191 (350)
T KOG4260|consen  136 TYGPDCLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFES  191 (350)
T ss_pred             CcCCccccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHh
Confidence            356778777      2565555321 123446899999999999999999999963

>KOG1226|consensus

Probab=93.53  E-value=0.14  Score=41.94  Aligned_cols=15  Identities=47%  Similarity=1.365  Sum_probs=14.0

Q ss_pred             ceeecCCCccCCCCC
Q psy4720          29 GQCQCKPNVIGRRCE   43 (95)
Q Consensus        29 G~C~C~~g~~G~~C~   43 (95)
                      |+|.|.+||.|.+|+
T Consensus       478 G~C~C~~G~~G~~CE  492 (783)
T KOG1226|consen  478 GQCRCDEGWLGKKCE  492 (783)
T ss_pred             cceecCCCCCCCccc
Confidence            789999999999996

>KOG1225|consensus

Probab=93.10  E-value=0.28  Score=38.80  Aligned_cols=53  Identities=26%  Similarity=0.574  Sum_probs=34.0

Q ss_pred             CCceeecCCCccCCCCC-------------------CCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCC
Q psy4720          27 FGGQCQCKPNVIGRRCE-------------------MCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPN   85 (95)
Q Consensus        27 ~~G~C~C~~g~~G~~C~-------------------~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~   85 (95)
                      ..|+|+|.++|.|..|+                   +|.+||.|...-++ .|++++.|  +.| |.|+.  ++.|++
T Consensus       294 ~~g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~-~C~~~g~c--v~g-C~C~~--Gw~G~d  365 (525)
T KOG1225|consen  294 VDGECICNPGYSGKDCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQR-ACSGGGQC--VNG-CKCKK--GWRGPD  365 (525)
T ss_pred             cCCEeecCCCccccccccccCCccCCCCCcccCCceEeCCCCcCCccccc-ccCCCcee--ccC-ceecc--CccCCC
Confidence            45799999999999995                   24556666432222 34443334  467 88877  677665

>KOG3509|consensus

Probab=89.85  E-value=0.62  Score=39.28  Aligned_cols=87  Identities=29%  Similarity=0.581  Sum_probs=57.1

Q ss_pred             cCCCCCccCCCCCCCCCCCccccCCcee-ecCCCccCCCCCCCCCCccCCC------Ccee-------ccCCCC--CCCC
Q psy4720           4 SFLHEALPCQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP------DCHP-------CNCPFT--AVCD   67 (95)
Q Consensus         4 ~~~~~C~~C~C~~~gs~~~~C~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~------~C~~-------C~C~~~--~~C~   67 (95)
                      .+...+..|.++.++.   .|+...+.+ .|..++.|.+|+.|.+|++++.      .+++       +.+++.  ..++
T Consensus       746 ~~~~~~~~c~~~~h~~---~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p~~~l~~~~~~~~r~~l~~~  822 (964)
T KOG3509|consen  746 LYPGLCEDCECNSHIS---QCEDDLGYNTDCQNNTEGDRCELCSPGTYGDARRGTPEDCRPATALTIQCSCNNRSPLSCD  822 (964)
T ss_pred             cCcccCcccccCCCcc---cccccccccccccccCccceeeecCCCccccCccCCcccCCccchhhhhhhhcccCccccc
Confidence            4556666677777666   588888888 6999999999999999999975      1222       222221  1122


Q ss_pred             CCCCceeccCCCccccCCCCcCCCCCC
Q psy4720          68 SYTGKLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        68 ~~tG~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                      ...-.|. ..+.+.+|.+|+++..+|+
T Consensus       823 ~~~~~~~-~~p~~~~g~~~~~~~~~~~  848 (964)
T KOG3509|consen  823 GFGPGCL-LCPHNTEGTTCERVKAGYY  848 (964)
T ss_pred             cCCCCcc-cCCCCccccchhhhccccc
Confidence            2221333 2334788888888888774

>KOG3509|consensus

Probab=86.08  E-value=0.8  Score=38.66  Aligned_cols=70  Identities=24%  Similarity=0.426  Sum_probs=52.4

Q ss_pred             cccCCceeecCCCccCCCCCCCCCCccCCC-------CceeccCCCC-CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720          24 CEQFGGQCQCKPNVIGRRCEMCATGYYGFP-------DCHPCNCPFT-AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        24 C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~-------~C~~C~C~~~-~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                      ++...-+|+|++++.|.+|+.|.+++.-..       .+..|.++.+ ..|+...+.+.- .-+...+..|..|.++|+
T Consensus       713 ~~~~~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~~nt~-~q~~~~~~~~~~~~~g~~  790 (964)
T KOG3509|consen  713 IAAEVEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLGYNTD-CQNNTEGDRCELCSPGTY  790 (964)
T ss_pred             hhhhccccccCccccCcccccccccccccccCCcCcccCcccccCCCccccccccccccc-ccccCccceeeecCCCcc
Confidence            355567899999999999999999876322       3456777766 469988888873 234677788999988875

>KOG1226|consensus

Probab=86.03  E-value=1.1  Score=36.92  Aligned_cols=15  Identities=40%  Similarity=1.185  Sum_probs=13.1

Q ss_pred             ceeecCCCccCCCCC
Q psy4720          29 GQCQCKPNVIGRRCE   43 (95)
Q Consensus        29 G~C~C~~g~~G~~C~   43 (95)
                      |+|+|.+||+|..|+
T Consensus       566 G~CvC~~GwtG~~C~  580 (783)
T KOG1226|consen  566 GRCVCNPGWTGSACN  580 (783)
T ss_pred             CcEEcCCCCccCCCC
Confidence            788899999999885

>KOG1219|consensus

Probab=82.06  E-value=2.4  Score=39.65  Aligned_cols=34  Identities=26%  Similarity=0.694  Sum_probs=21.8

Q ss_pred             CCCccCCCCCCCCCCCccccC---CceeecCCCccCCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQF---GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~---~G~C~C~~g~~G~~C~~   44 (95)
                      ..|..=.|...|+    |...   .-+|.|++-|.|.+|+.
T Consensus      3865 d~C~~npCqhgG~----C~~~~~ggy~CkCpsqysG~~CEi 3901 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGT----CISQPKGGYKCKCPSQYSGNHCEI 3901 (4289)
T ss_pred             cccccCcccCCCE----ecCCCCCceEEeCcccccCccccc
Confidence            4454444655554    4332   23889999999999974

>KOG1218|consensus

Probab=80.44  E-value=9.2  Score=27.15  Aligned_cols=48  Identities=29%  Similarity=0.660  Sum_probs=29.1

Q ss_pred             cccCCceeecCCCccCCCCCCCCCCccCCCCce-eccCCCCCCCCCCCCceeccC
Q psy4720          24 CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCH-PCNCPFTAVCDSYTGKLAQVL   77 (95)
Q Consensus        24 C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~-~C~C~~~~~C~~~tG~C~c~~   77 (95)
                      ++..++.|.|++++.|.++..-...      |. .+.+.+.+.|+..++.+.+..
T Consensus       157 ~~~~~~~c~c~~g~~g~~~~~~~~~------c~~~~~~~~g~~C~~~~~~~~~~~  205 (316)
T KOG1218|consen  157 CDCKNGICTCQPGFVGVFCVESCSG------CSPLTACENGAKCNRSTGSCLCYP  205 (316)
T ss_pred             cCCCCCceeccCCcccccccccCCC------cCCCcccCCCCeeeccccccccCC
Confidence            4555677777777777776532211      22 344555457888888777655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	5e-10
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	4e-06
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	1e-04
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	2e-08
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	2e-07
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	3e-05
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	1e-06
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	2e-05
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	1e-05
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-04

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 10  LPCQCDIDGSKSFE--CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 58
             C C+  G+   +  C    GQCQC P+V GR C  C  GYY       C
Sbjct: 110 KACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 16/77 (20%)

Query: 11  PCQCD--IDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP-------DCHPCNC 60
           PCQC+  ID +    C +  G+C +C  N  G  C+ C  G++G P        C  C C
Sbjct: 55  PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114

Query: 61  ------PFTAVCDSYTG 71
                    + C+  TG
Sbjct: 115 NPYGTVQQQSSCNPVTG 131

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCP- 61
          C C    S +   +     C  C     G+RCE+C  GY+G P         C PC C  
Sbjct: 1  CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60

Query: 62 -----FTAVCDSYTGK 72
                   C+  TG+
Sbjct: 61 NIDPNAVGNCNRLTGE 76

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 11  PCQCDIDGSKSFE--CEQFGGQCQCKPNVIGRRCEMCATGYYGFPD----CHPCNCP--- 61
            C C+  G+      C+   G C CK  V G+RC+ C   ++G  +    C PC+C    
Sbjct: 440 SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGG 499

Query: 62  -FTAVCDSYTG 71
                C   +G
Sbjct: 500 ALNNSCSEDSG 510

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 12  CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP-----DCHPCNC------ 60
                DG   F      GQC+CK +V G RC++C  G+Y         C  C C      
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTI 449

Query: 61  PFTAVCDSYTG 71
           P    CDS TG
Sbjct: 450 PGGNPCDSETG 460

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 11  PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCE 43
           PC CD+ G+ +  C +  GQC C P++IGR+C 
Sbjct: 492 PCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 13  QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD---CHPCNCP 61
           +C  D          G    C+ N  G +CE C   ++   +   C P    
Sbjct: 319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAH 370

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 11  PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNC 60
            C+C+   S+  + E     C CK N  G  CE C   +   P          +C PC+C
Sbjct: 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313

Query: 61  P 61
            
Sbjct: 314 N 314

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 11  PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD--------CHPCNCP 61
             + +   ++    +  G    C+ +  G  CE C  G++  PD        C P    
Sbjct: 340 VDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 11  PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCPFTAVCDSY 69
            C           C      C C     G +C   C  G+YG      C+C    +CD +
Sbjct: 245 RCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF 304

Query: 70  TG 71
            G
Sbjct: 305 QG 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.74
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.52
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	99.43
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	99.4
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.24
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.02
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.9
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	98.85
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.8
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	98.51
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	98.37
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	98.26
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.31
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.23
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.21
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	97.03
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	96.88
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	96.79
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	96.78
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	96.68
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	96.63
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	96.57
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	96.56
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	96.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.19
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	93.55
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	92.86
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	92.84
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	92.69
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	92.65
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	90.18
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	89.76
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	88.55
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	87.46
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	87.45
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	85.61
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	82.66
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	82.14
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	81.87
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	81.62
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	81.41
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	80.97
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	80.51

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.74  E-value=1.8e-18  Score=114.83  Aligned_cols=85  Identities=28%  Similarity=0.693  Sum_probs=74.9

Q ss_pred             CCCccCCCCCCCCCC--CccccCCceee-cCCCccCCCCCCCCCCccCCC-------CceeccCCCCC------CCCCCC
Q psy4720           7 HEALPCQCDIDGSKS--FECEQFGGQCQ-CKPNVIGRRCEMCATGYYGFP-------DCHPCNCPFTA------VCDSYT   70 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~--~~C~~~~G~C~-C~~g~~G~~C~~C~~G~~g~~-------~C~~C~C~~~~------~C~~~t   70 (95)
                      ..|++|+|+..+...  ..|++.+|+|+ |+++|+|++|++|++||||++       .|++|.|+..+      .||+++
T Consensus        51 ~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~t  130 (162)
T 1klo_A           51 RLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT  130 (162)
T ss_dssp             EEEEECCSTTCBCTTCSCCBCTTTCCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTT
T ss_pred             CCCeeCcCCCCCCcccCCcccCCCCcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCC
Confidence            468999999875432  46999999995 999999999999999999975       47899999853      899999


Q ss_pred             CceeccCCCccccCCCCcCCCCC
Q psy4720          71 GKLAQVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        71 G~C~c~~~~~~~~~~c~~c~~~~   93 (95)
                      |+|+|++  +|+|.+|++|+++|
T Consensus       131 G~C~C~~--g~~G~~Cd~C~~g~  151 (162)
T 1klo_A          131 GQCQCLP--HVSGRDCGTCDPGY  151 (162)
T ss_dssp             CCCCBCT--TEESTTCCEECTTC
T ss_pred             CEeECCC--CCcCCCCCCCCCCc
Confidence            9999998  99999999999988

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.52  E-value=4.5e-15  Score=98.35  Aligned_cols=76  Identities=32%  Similarity=0.760  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCCccccCC----cee-ecCCCccCCCCCCCCCCccCCC--------CceeccCCCC------CCCCCCCCc
Q psy4720          12 CQCDIDGSKSFECEQFG----GQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCPFT------AVCDSYTGK   72 (95)
Q Consensus        12 C~C~~~gs~~~~C~~~~----G~C-~C~~g~~G~~C~~C~~G~~g~~--------~C~~C~C~~~------~~C~~~tG~   72 (95)
                      |.|...++    |+..+    ++| .|+++|+|.+|++|++||||.+        .|++|+|+++      +.|++++|+
T Consensus         1 C~C~~~g~----C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~   76 (162)
T 1klo_A            1 CPCPGGSS----CAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGE   76 (162)
T ss_dssp             CCSCTTCC----EEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTTCC
T ss_pred             CcCcCcCc----ccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCCCc
Confidence            45666654    76544    689 6999999999999999999965        4799999976      579999999


Q ss_pred             ee-ccCCCccccCCCCcCCCCC
Q psy4720          73 LA-QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        73 C~-c~~~~~~~~~~c~~c~~~~   93 (95)
                      |+ |+.  +++|.+|++|+++|
T Consensus        77 C~~C~~--g~~G~~Ce~C~~Gy   96 (162)
T 1klo_A           77 CLKCIY--NTAGFYCDRCKEGF   96 (162)
T ss_dssp             BCCBCT--TEETTTTCEECTTE
T ss_pred             ccCCCC--CCcCCCcCcCchhh
Confidence            96 988  99999999999987

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=99.43  E-value=9.1e-14  Score=103.54  Aligned_cols=79  Identities=30%  Similarity=0.620  Sum_probs=66.7

Q ss_pred             ccCCCCCCCCCCCcccc------CCceeecCCCccCCCCCCCCCCccCCC----------CceeccCCCCC-CC--C---
Q psy4720          10 LPCQCDIDGSKSFECEQ------FGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNCPFTA-VC--D---   67 (95)
Q Consensus        10 ~~C~C~~~gs~~~~C~~------~~G~C~C~~g~~G~~C~~C~~G~~g~~----------~C~~C~C~~~~-~C--~---   67 (95)
                      .+|+|++++.   .|+.      ..|+|.|++++.|.+|++|.+||||.+          .|++|+|++++ .|  |   
T Consensus       264 g~C~CnGHA~---~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~  340 (403)
T 2y38_A          264 GRCVCHGHAD---VCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEV  340 (403)
T ss_dssp             EECCCTTBCS---CEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHH
T ss_pred             cccccCCCcc---ccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCccc
Confidence            4689998876   3653      357899999999999999999999874          69999999874 46  2   


Q ss_pred             -------------CCCCcee-ccCCCccccCCCCcCCCCC
Q psy4720          68 -------------SYTGKLA-QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        68 -------------~~tG~C~-c~~~~~~~~~~c~~c~~~~   93 (95)
                                   ..+|+|. |+.  ++.|.+|++|++||
T Consensus       341 ~~~~~s~~~~~~~~~~G~C~~C~~--nt~G~~CErC~~GY  378 (403)
T 2y38_A          341 DRREASQNQDNVYQGGGVCLDCQH--HTTGINCERCLPGF  378 (403)
T ss_dssp             HHTTCCCCTTSCSCCCEEESSCCS--SEESTTSCEECTTC
T ss_pred             ccccccccccccCCCCCCCCCCcC--cCcCCCCCcCCCCc
Confidence                         4689997 887  99999999999998

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=99.40  E-value=8.9e-14  Score=102.80  Aligned_cols=82  Identities=23%  Similarity=0.446  Sum_probs=68.9

Q ss_pred             ccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC----------CceeccCCCCC----------CCCCC
Q psy4720          10 LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNCPFTA----------VCDSY   69 (95)
Q Consensus        10 ~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~----------~C~~C~C~~~~----------~C~~~   69 (95)
                      ..|.|+.+++....++...+.|.|++++.|..|++|.+|||+++          .|++|+|+.++          .|+..
T Consensus       253 g~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~  332 (375)
T 4aqt_A          253 GRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH  332 (375)
T ss_dssp             EEECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSC
T ss_pred             ceecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCC
Confidence            46889999886544555667889999999999999999999975          58999998753          24678


Q ss_pred             CCcee-ccCCCccccCCCCcCCCCC
Q psy4720          70 TGKLA-QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        70 tG~C~-c~~~~~~~~~~c~~c~~~~   93 (95)
                      +|+|. |+.  +++|.+|++|++||
T Consensus       333 ~G~C~~C~~--n~~G~~Ce~C~~Gy  355 (375)
T 4aqt_A          333 GGHCTNCRD--NTDGAKCERCRENF  355 (375)
T ss_dssp             CEEECSCTT--TEESTTSCEECSSE
T ss_pred             CCCCCCCCC--CCcCCCCCCCCcCc
Confidence            99995 888  89999999999997

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.24  E-value=4.3e-12  Score=96.41  Aligned_cols=81  Identities=25%  Similarity=0.621  Sum_probs=33.5

Q ss_pred             CCCCccCCCCCCCCCC--CccccCCceeecCCCccCCCCCCCCCCccCCC----CceeccCCCC----CCCCCCCCceec
Q psy4720           6 LHEALPCQCDIDGSKS--FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----DCHPCNCPFT----AVCDSYTGKLAQ   75 (95)
Q Consensus         6 ~~~C~~C~C~~~gs~~--~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~----~C~~C~C~~~----~~C~~~tG~C~c   75 (95)
                      ...|.+|.|+..++..  ..|+..+|+|.|+++|+|..|++|++||||+.    .|++|.|++.    ..|+..+|+|.|
T Consensus       435 ~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C  514 (525)
T 4aqs_A          435 PYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSC  514 (525)
T ss_dssp             TTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------------------
T ss_pred             CCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeEC
Confidence            3468889999888753  46889999999999999999999999999965    5889999875    368889999999


Q ss_pred             cCCCccccCCCCc
Q psy4720          76 VLIQVVTFPNYPS   88 (95)
Q Consensus        76 ~~~~~~~~~~c~~   88 (95)
                      ++  +++|.+|++
T Consensus       515 ~~--G~~G~~Ceq  525 (525)
T 4aqs_A          515 LP--HMIGRQCNE  525 (525)
T ss_dssp             -------------
T ss_pred             CC--CCcCCCCCC
Confidence            98  999999874

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.02  E-value=4.1e-10  Score=85.53  Aligned_cols=84  Identities=36%  Similarity=0.735  Sum_probs=63.1

Q ss_pred             CCccCCCCCCCCCC---------CccccCCceeecCCCccCCCCCCCCCCccCCC-----CceeccCCCC------CCCC
Q psy4720           8 EALPCQCDIDGSKS---------FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP-----DCHPCNCPFT------AVCD   67 (95)
Q Consensus         8 ~C~~C~C~~~gs~~---------~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~-----~C~~C~C~~~------~~C~   67 (95)
                      .+.+|.|+..+...         ..++...+.|.|++++.|.+|++|++||||..     .|.+|.|+..      +.|+
T Consensus       377 ~~~~C~C~~~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd  456 (525)
T 4aqs_A          377 LCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCD  456 (525)
T ss_dssp             CEEECCCCTTTBSGGGCCCCSCBGGGTBCSSCCCBCTTEETTTTCEECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBC
T ss_pred             CCcCCCCCCCCCCCCccccCCCCCCcCCCCCccCCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCCCCCceecCCCccc
Confidence            45667777665432         12344568899999999999999999999975     5888888764      4688


Q ss_pred             CCCCceeccCCCccccCCCCcCCCCC
Q psy4720          68 SYTGKLAQVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        68 ~~tG~C~c~~~~~~~~~~c~~c~~~~   93 (95)
                      +.+|+|.|+.  +++|.+|++|+++|
T Consensus       457 ~~tg~C~C~~--g~~G~~Ce~C~~G~  480 (525)
T 4aqs_A          457 SETGYCYCKR--LVTGQRCDQCLPQH  480 (525)
T ss_dssp             TTTCCBCBCT--TCCSTTTCC-----
T ss_pred             CCCCEEECCC--CCcCCCcccCCCCc
Confidence            8999999998  99999999999887

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.90  E-value=1.5e-09  Score=81.05  Aligned_cols=84  Identities=21%  Similarity=0.407  Sum_probs=64.0

Q ss_pred             cCCCCCcc-C-CCCCCCCCCCccccCCceeecCCCccCCCCCC-CCCCccCCCCceeccCC----CCCCCCCCCCceecc
Q psy4720           4 SFLHEALP-C-QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCP----FTAVCDSYTGKLAQV   76 (95)
Q Consensus         4 ~~~~~C~~-C-~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~-C~~G~~g~~~C~~C~C~----~~~~C~~~tG~C~c~   76 (95)
                      ++...|.. | .|...|    .|+..+++|.|++||.|..|+. |.++|||...-.+|.++    .++.|++.+++|.|.
T Consensus       193 ~~G~~C~~~C~~C~~~G----~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~  268 (423)
T 2gy5_A          193 KWGPECNHLCTACMNNG----VCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCA  268 (423)
T ss_dssp             EESTTSCEECCCCCTTC----EECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECC
T ss_pred             CCCCCCCCCCCCCCCCC----EEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeC
Confidence            44555632 3 255554    4887789999999999999996 99999996522367633    346788889999998


Q ss_pred             CCCccccCCCCc-CCCCC
Q psy4720          77 LIQVVTFPNYPS-CKLWY   93 (95)
Q Consensus        77 ~~~~~~~~~c~~-c~~~~   93 (95)
                      .  ++.|.+|+. |.++|
T Consensus       269 ~--G~~G~~C~~~C~~G~  284 (423)
T 2gy5_A          269 T--GWKGLQCNEACHPGF  284 (423)
T ss_dssp             B--TCBSGGGCBCCCTTB
T ss_pred             C--CcccccccCccCCCC
Confidence            8  899999996 88876

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.85  E-value=9.5e-10  Score=82.44  Aligned_cols=64  Identities=27%  Similarity=0.620  Sum_probs=41.6

Q ss_pred             CCccCCCCCCCCCCCccccCC--ceeecCCCccCCCCCCCCCCccCCC---------------CceeccCCCCC-CCCCC
Q psy4720           8 EALPCQCDIDGSKSFECEQFG--GQCQCKPNVIGRRCEMCATGYYGFP---------------DCHPCNCPFTA-VCDSY   69 (95)
Q Consensus         8 ~C~~C~C~~~gs~~~~C~~~~--G~C~C~~g~~G~~C~~C~~G~~g~~---------------~C~~C~C~~~~-~C~~~   69 (95)
                      ...+|.|+++++   .|++.+  ++|.|++++.|+.|++|.+|||+.+               .|++|+|+.++ .||+.
T Consensus       293 v~g~C~CnGHas---~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~  369 (426)
T 3zyj_B          293 VRGRCKCNLHAT---VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE  369 (426)
T ss_dssp             CEEEECCSSSCS---CEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC----------
T ss_pred             ccccCcCCCchh---hcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC
Confidence            456899999887   477654  4999999999999999999998653               38889998753 68877


Q ss_pred             CCcee
Q psy4720          70 TGKLA   74 (95)
Q Consensus        70 tG~C~   74 (95)
                      ++.|.
T Consensus       370 t~~C~  374 (426)
T 3zyj_B          370 LLHCQ  374 (426)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            77765

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.80  E-value=5.2e-09  Score=78.16  Aligned_cols=65  Identities=25%  Similarity=0.509  Sum_probs=56.3

Q ss_pred             CccccCCceeecCCCccCCCCCC-CCCCccCCCCce-eccCCCCCCCCCCCCceeccCCCccccCCCCcCC
Q psy4720          22 FECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCH-PCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCK   90 (95)
Q Consensus        22 ~~C~~~~G~C~C~~g~~G~~C~~-C~~G~~g~~~C~-~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~c~   90 (95)
                      ..|++.+++|.|+++|.|..|+. |.+||+|. .|. +|.|.+++.|+..++ |.|..  ++.|.+|+.+.
T Consensus       256 g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~-~C~~~C~C~ngg~C~~~~~-C~C~~--G~~G~~Ce~~~  322 (423)
T 2gy5_A          256 VFCLPDPYGCSCATGWKGLQCNEACHPGFYGP-DCKLRCSCNNGEMCDRFQG-CLCSP--GWQGLQCEREG  322 (423)
T ss_dssp             CEEETTTTEEECCBTCBSGGGCBCCCTTBCSB-TTCCBCCCTTCCEEETTTE-EECCT--TCBSTTSCBCS
T ss_pred             CEECCCCCeEEeCCCcccccccCccCCCCcCC-cccccccCCCCCEecCCCc-eECCC--CCcCCCCccCc
Confidence            35777789999999999999996 99999994 454 788998889998877 99988  99999999873

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=98.51  E-value=3.9e-08  Score=72.64  Aligned_cols=56  Identities=29%  Similarity=0.841  Sum_probs=43.9

Q ss_pred             CCCCCccCCCCCCCCCC------CccccCCcee-ecCCCccCCCCCCCCCCccCCC---CceeccC
Q psy4720           5 FLHEALPCQCDIDGSKS------FECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP---DCHPCNC   60 (95)
Q Consensus         5 ~~~~C~~C~C~~~gs~~------~~C~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C   60 (95)
                      ....|++|+|++.++..      ..|+..+|+| .|++|++|.+|++|++||||++   .|++|.-
T Consensus       304 ~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~~~~C~pCaA  369 (375)
T 4aqt_A          304 SASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAA  369 (375)
T ss_dssp             CCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCTTCSSCEEC--
T ss_pred             CCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCcCCCCCcCCcC
Confidence            34579999999888742      2356678999 5999999999999999999986   4677653

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.37  E-value=9.1e-08  Score=71.73  Aligned_cols=63  Identities=30%  Similarity=0.648  Sum_probs=8.0

Q ss_pred             CCCCCccCCCCCCCCCCCccccCCceee----cCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCCceec
Q psy4720           5 FLHEALPCQCDIDGSKSFECEQFGGQCQ----CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQ   75 (95)
Q Consensus         5 ~~~~C~~C~C~~~gs~~~~C~~~~G~C~----C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c   75 (95)
                      ....|++|+|+..+.   .|++.++.|.    |..++   +| +|++||+|. .|+.|.|.+.+.|+..+|+|.-
T Consensus       350 ~~~~C~pC~Cn~~g~---~CD~~t~~C~ngg~C~~~~---~C-~C~~G~~G~-~Ce~c~C~~~g~C~~~~Gqc~~  416 (426)
T 3zyj_B          350 AANACIPSISSIGTN---VCDNELLHCQNGGTCHNNV---RC-LCPAAYTGI-LCEKLRCEEAGSCGSDSGQGAP  416 (426)
T ss_dssp             BCCCCCCCCC-----------------------------------------------------------------
T ss_pred             CCCcccCCCCCCCcC---ccccCcccCCCCCCcCCCC---CC-cCCCCCcCC-CCcCCCCCCCCcccCCCCccCC
Confidence            456799999988765   5998888886    88877   88 999999995 4999999998999999999983

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=98.26  E-value=5.2e-07  Score=67.26  Aligned_cols=49  Identities=29%  Similarity=0.640  Sum_probs=39.0

Q ss_pred             CCCCCccCCCCCCCCCC---------------CccccCCceee-cCCCccCCCCCCCCCCccCCC
Q psy4720           5 FLHEALPCQCDIDGSKS---------------FECEQFGGQCQ-CKPNVIGRRCEMCATGYYGFP   53 (95)
Q Consensus         5 ~~~~C~~C~C~~~gs~~---------------~~C~~~~G~C~-C~~g~~G~~C~~C~~G~~g~~   53 (95)
                      ..+.|++|+|++++..-               ..+...+|+|. |++++.|.+|++|++||||.+
T Consensus       318 ~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p  382 (403)
T 2y38_A          318 SANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP  382 (403)
T ss_dssp             CCCCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECT
T ss_pred             CCccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCC
Confidence            34689999999887631               01224589995 999999999999999999976

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.31  E-value=0.00034  Score=44.00  Aligned_cols=20  Identities=45%  Similarity=0.979  Sum_probs=13.8

Q ss_pred             cccCCc--eeecCCCccCCCCC
Q psy4720          24 CEQFGG--QCQCKPNVIGRRCE   43 (95)
Q Consensus        24 C~~~~G--~C~C~~g~~G~~C~   43 (95)
                      |....|  .|.|++||+|..|+
T Consensus        21 C~~~~g~~~C~C~~Gy~G~~C~   42 (135)
T 2vj3_A           21 CINTLGSFECQCLQGYTGPRCE   42 (135)
T ss_dssp             EEECSSSEEEECCTTEESTTSC
T ss_pred             eECCCCCEEEECCCCCcCCccc
Confidence            544433  77888888887774

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.23  E-value=0.00016  Score=57.00  Aligned_cols=75  Identities=23%  Similarity=0.431  Sum_probs=50.5

Q ss_pred             CccCCCCCCCCCCCcccc----CCceeecCCCccCCCCCCCCCCccCCC----Cceecc----CCCCCCCCCCCCceecc
Q psy4720           9 ALPCQCDIDGSKSFECEQ----FGGQCQCKPNVIGRRCEMCATGYYGFP----DCHPCN----CPFTAVCDSYTGKLAQV   76 (95)
Q Consensus         9 C~~C~C~~~gs~~~~C~~----~~G~C~C~~g~~G~~C~~C~~G~~g~~----~C~~C~----C~~~~~C~~~tG~C~c~   76 (95)
                      |. |.|......+..|+.    ..|.|.|++||+|.+|+ |..++++.+    .|....    |.+++.|.  .|+|.|.
T Consensus       423 C~-C~C~~~~~~s~~Cs~~G~C~~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~G~C~C~  498 (687)
T 3k6s_B          423 CE-CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCH  498 (687)
T ss_dssp             CC-CCCCCSSSCSSTGGGSEEESSSSEEECSSEESTTSC-EESSSCCCSGGGSTTSSSTTSCGGGSSEEEE--TTEEEEC
T ss_pred             cc-ccCccCCCCCCCCCCCCEEeCCEeEcCCCCcCCccc-ccCCcCCccccCCCCCCCCCCCcCCCCCEEe--CCEEEcC
Confidence            44 566554433334542    24789999999999998 666666543    354432    66677888  6899998


Q ss_pred             C----CCccccCCCC
Q psy4720          77 L----IQVVTFPNYP   87 (95)
Q Consensus        77 ~----~~~~~~~~c~   87 (95)
                      .    ..++.|..|+
T Consensus       499 ~~~~~~~G~~G~~Ce  513 (687)
T 3k6s_B          499 TSDVPGKLIYGQYCE  513 (687)
T ss_dssp             CCCSTTCCEESTTSC
T ss_pred             CCCCCCCCccccccc
Confidence            1    1389999987

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.21  E-value=0.00031  Score=55.42  Aligned_cols=54  Identities=22%  Similarity=0.576  Sum_probs=39.8

Q ss_pred             CceeecCCCccCCCCCCCCCCccCCCCcee---ccCCCCCCCCCCCCceeccCCCccccCCCCcC
Q psy4720          28 GGQCQCKPNVIGRRCEMCATGYYGFPDCHP---CNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSC   89 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~---C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~c   89 (95)
                      .|+|.|++||+|..|+ |....   ..|..   ..|.+++.|..  |+|.|..  +++|.+|+.|
T Consensus       537 ~g~C~C~~G~~G~~Ce-c~~~~---~~C~~~~g~~Cs~~G~C~~--g~C~C~~--Gy~G~~Ce~c  593 (687)
T 3k6s_B          537 CGKCRCHPGFEGSACQ-CERTT---EGCLNPRRVECSGRGRCRC--NVCECHS--GYQLPLCQEC  593 (687)
T ss_dssp             TTEEEECTTCCSTTSC-SCCSS---CTTBCTTCSBTSSSCCBCS--SCBCCST--TCCTTTTCCC
T ss_pred             CCEEEcCCCCcCCCCc-cCCCC---CCCCCCCCCCCCCCCcCCC--CEEECCC--CCcCCCCCCC
Confidence            4789999999999998 33211   12332   25677788875  8999977  8999999875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=97.03  E-value=0.00051  Score=44.89  Aligned_cols=20  Identities=30%  Similarity=0.836  Sum_probs=16.1

Q ss_pred             ccccCCceeecCCCccCCCCC
Q psy4720          23 ECEQFGGQCQCKPNVIGRRCE   43 (95)
Q Consensus        23 ~C~~~~G~C~C~~g~~G~~C~   43 (95)
                      .|+. +++|.|+++|+|..|+
T Consensus        45 ~C~~-~g~C~C~~G~~G~~C~   64 (169)
T 2vj2_A           45 ACDQ-NGNKTCMEGWMGPECN   64 (169)
T ss_dssp             EECS-SCCEEECTTEESTTSC
T ss_pred             EeCC-CCeeECCCCCcCCCCC
Confidence            4654 6788999999998886

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=96.88  E-value=0.00096  Score=48.02  Aligned_cols=16  Identities=38%  Similarity=1.028  Sum_probs=8.7

Q ss_pred             CceeecCCCccCCCCC
Q psy4720          28 GGQCQCKPNVIGRRCE   43 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~   43 (95)
                      ++.|.|++||+|..|+
T Consensus       196 ~~~C~C~~G~~G~~C~  211 (324)
T 2ygq_A          196 PGFCICPPGFYGVNCD  211 (324)
T ss_dssp             SCCEECCTTCBTTTTC
T ss_pred             CCEEeCCCCccCCCcc
Confidence            3555555555555553

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=96.79  E-value=0.00078  Score=53.14  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCCceec-cCCCccccCCCCcC
Q psy4720          60 CPFTAVCDSYTGKLAQ-VLIQVVTFPNYPSC   89 (95)
Q Consensus        60 C~~~~~C~~~tG~C~c-~~~~~~~~~~c~~c   89 (95)
                      |.+++.|.  .|+|.| ..  ++.|.+|+.|
T Consensus       575 C~~~G~C~--~g~C~C~~~--Gy~G~~Ce~C  601 (690)
T 3fcs_B          575 CSGRGKCE--CGSCVCIQP--GSYGDTCEKC  601 (690)
T ss_dssp             TSSSCEEE--TTEEECCST--TCBSTTSCBC
T ss_pred             CCCCCEEe--CCEEECCCC--CccCCCcCcC
Confidence            45556664  478888 66  8889888874

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=96.78  E-value=0.00072  Score=44.19  Aligned_cols=60  Identities=23%  Similarity=0.442  Sum_probs=37.6

Q ss_pred             cccCCceeecCCCccCCCCCC-------------------CCCCccCCCCce----e----ccCCCCCCCCC---CCCce
Q psy4720          24 CEQFGGQCQCKPNVIGRRCEM-------------------CATGYYGFPDCH----P----CNCPFTAVCDS---YTGKL   73 (95)
Q Consensus        24 C~~~~G~C~C~~g~~G~~C~~-------------------C~~G~~g~~~C~----~----C~C~~~~~C~~---~tG~C   73 (95)
                      |.. ++.|.|+++|+|..|++                   |.+||.|. .|.    .    ..|.+++.|..   .+++|
T Consensus        79 C~~-~~~C~C~~G~~G~~C~~C~~~~~C~~g~C~~~~~C~C~~G~~G~-~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C  156 (169)
T 2vj2_A           79 CKL-PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQ-LCDKDLNYCGTHQPCLNGGTCSNTGPDKYQC  156 (169)
T ss_dssp             CSS-TTCCEECTTEESSSSCEECCCTTCSSEECSSTTCCEECTTEETT-TTCEESCHHHHTCCCCTTCEEEECSTTCEEE
T ss_pred             cCC-CCeeECCCCCCCCCcccCCCCCCCCCCCcCCCCEEeCCCCCCCC-cccCCCCCCCCCCCCCCCCEEcCCCCCCcEe
Confidence            544 57888999999988864                   34455553 232    1    23555566654   24677


Q ss_pred             eccCCCccccCCCC
Q psy4720          74 AQVLIQVVTFPNYP   87 (95)
Q Consensus        74 ~c~~~~~~~~~~c~   87 (95)
                      .|.+  ++.|.+|+
T Consensus       157 ~C~~--G~~G~~Ce  168 (169)
T 2vj2_A          157 SCPE--GYSGPNCE  168 (169)
T ss_dssp             ECCT--TCCSTTSC
T ss_pred             ECCC--CCcCcCcC
Confidence            7776  77777765

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=96.68  E-value=0.0019  Score=46.47  Aligned_cols=59  Identities=27%  Similarity=0.667  Sum_probs=34.3

Q ss_pred             cccCCceeecCCCccCCCCCC--------------------CCCCccCCCCcee--c--cCCCCCCCCCCCCceeccCCC
Q psy4720          24 CEQFGGQCQCKPNVIGRRCEM--------------------CATGYYGFPDCHP--C--NCPFTAVCDSYTGKLAQVLIQ   79 (95)
Q Consensus        24 C~~~~G~C~C~~g~~G~~C~~--------------------C~~G~~g~~~C~~--C--~C~~~~~C~~~tG~C~c~~~~   79 (95)
                      |.. ++.|.|++||+|..|+.                    |.+||+|. .|..  |  .|.+++.|.. +++|.|..  
T Consensus       161 C~~-~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~-~C~~~~C~~~C~~~G~C~~-~~~C~C~~--  235 (324)
T 2ygq_A          161 CNE-RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGV-NCDKANCSTTCFNGGTCFY-PGKCICPP--  235 (324)
T ss_dssp             ECT-TSCEECCTTEESSSSCEESSSSCCCTTCEECSSCCEECCTTCBTT-TTCBCCCSSCCCSSCCBSC-SSCBCCCT--
T ss_pred             ECC-CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcCCCEEeCCCCccCC-CcccCcCCCCCCCCCeeCC-CCeeeCCC--
Confidence            554 46777777777777651                    55666663 2221  1  2344456653 56677766  


Q ss_pred             ccccCCCC
Q psy4720          80 VVTFPNYP   87 (95)
Q Consensus        80 ~~~~~~c~   87 (95)
                      ++.|.+|+
T Consensus       236 G~~G~~C~  243 (324)
T 2ygq_A          236 GLEGEQCE  243 (324)
T ss_dssp             TCCTTTTC
T ss_pred             CccCCCCC
Confidence            66676665

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=96.63  E-value=0.00074  Score=49.27  Aligned_cols=41  Identities=27%  Similarity=0.755  Sum_probs=34.5

Q ss_pred             ccCCCCCCCCCCCccccCCc--eeecCCCccCCCCCCCCCCccCCC
Q psy4720          10 LPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCEMCATGYYGFP   53 (95)
Q Consensus        10 ~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~~C~~G~~g~~   53 (95)
                      .+|.|+++++   .|.+.+|  +|.|+.++.|..|++|.++|++.+
T Consensus       268 G~C~CnGHA~---~C~~~~g~~~C~C~HnT~G~~Ce~C~p~y~~~p  310 (338)
T 3tbd_A          268 GRCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS  310 (338)
T ss_dssp             EEECCTTBCS---CEEEETTEEEECCCTTEESTTSCEECTTCBSSC
T ss_pred             ccccccCCcC---ccCCCCCCceecCCCCCCCCCCcccCccccCCC
Confidence            3688998877   4776555  699999999999999999999876

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=96.57  E-value=0.0011  Score=52.26  Aligned_cols=57  Identities=25%  Similarity=0.519  Sum_probs=36.8

Q ss_pred             CceeecCCCccCCCCCCCCCCccCCCCceecc-------CCCCCCCCCCCCceeccCC--CccccCCCC
Q psy4720          28 GGQCQCKPNVIGRRCEMCATGYYGFPDCHPCN-------CPFTAVCDSYTGKLAQVLI--QVVTFPNYP   87 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~-------C~~~~~C~~~tG~C~c~~~--~~~~~~~c~   87 (95)
                      .|.|.|++||+|..|+ +..++++......|.       |.+++.|.  .|+|.|...  .+++|.+|+
T Consensus       457 ~G~C~C~~Gy~G~~Ce-~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~g~C~C~~~~~~Gy~G~~Ce  522 (690)
T 3fcs_B          457 CGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCE  522 (690)
T ss_dssp             TTEEEECTTCCSSSSC-CSCC------CCCCSSSSSSCGGGGSEEEC--SSSEEECCCSSCCCBSTTSC
T ss_pred             CCceEeCCCccCCcee-eccCccCCccCCcCCCCCCCCCCCCCCEEE--CCeeEeecCCCCCeeCCCcC
Confidence            4678899999999995 455555533222232       56667787  589999821  289999885

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=96.56  E-value=0.0021  Score=40.24  Aligned_cols=15  Identities=20%  Similarity=0.740  Sum_probs=9.9

Q ss_pred             eeecCCCccCCCCCC
Q psy4720          30 QCQCKPNVIGRRCEM   44 (95)
Q Consensus        30 ~C~C~~g~~G~~C~~   44 (95)
                      .|.|+++|+|..|+.
T Consensus        24 ~C~C~~G~~G~~C~~   38 (143)
T 4d90_A           24 SCECPDGFTDPNCSS   38 (143)
T ss_dssp             EEECCTTCCTTTTCS
T ss_pred             EeECCCCCCCCCCcc
Confidence            567777777766653

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=96.22  E-value=0.0011  Score=45.44  Aligned_cols=55  Identities=24%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             CceeecCCCccCCCCCCCCCCccCC----CCce----eccCCCCCCCCCCCCceeccCCCc------cccCCCC
Q psy4720          28 GGQCQCKPNVIGRRCEMCATGYYGF----PDCH----PCNCPFTAVCDSYTGKLAQVLIQV------VTFPNYP   87 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~C~~G~~g~----~~C~----~C~C~~~~~C~~~tG~C~c~~~~~------~~~~~c~   87 (95)
                      .|.|.|.++|+|..|+ |+.+.+..    ..|.    .-.|.+++.|.  .|+|.|..  +      +.|..|+
T Consensus       106 ~g~C~C~~G~~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~g~C~C~~--gw~~~~~~~G~~Ce  174 (217)
T 2p28_B          106 CGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCHT--SDVPGKLIYGQYCE  174 (217)
T ss_dssp             TTEEEECTTEESTTSC-EECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--TTEEEECC--CCSTTCCEESTTSC
T ss_pred             CCEEECCCCccCCccc-ccCcccccccCCCcCCCCCCCCCCCCCCEEe--CCceECCC--CCCCcccEECCCcc
Confidence            3789999999999998 55443321    1243    23355667787  58999987  5      6888886

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.19  E-value=0.0056  Score=45.93  Aligned_cols=53  Identities=26%  Similarity=0.524  Sum_probs=17.0

Q ss_pred             ccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCCCCc
Q psy4720          23 ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPS   88 (95)
Q Consensus        23 ~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~   88 (95)
                      .|.. .+.|.|+++|+|..|+.        ..|.+ .|.+++.|... ..|.|..  ++.|.+|+.
T Consensus       403 ~C~~-~~~C~C~~G~~G~~C~~--------~~C~~-~C~~~g~C~~~-~~C~C~~--G~~G~~C~~  455 (463)
T 2wg3_C          403 YCTP-TGKCCCSPGWEGDFCRT--------AKCEP-ACRHGGVCVRP-NKCLCKK--GYLGPQCEQ  455 (463)
T ss_dssp             EECT-TSCEEECTTEESTTSCE--------ECC---------------------------------
T ss_pred             ccCC-CCeECCCCCcCCCcCCc--------CcCCC-CCCCCCEECCC-CEEECCC--CcccCCCCC
Confidence            3654 46899999999998862        23443 56667788854 7899988  899988864

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=93.55  E-value=0.079  Score=25.96  Aligned_cols=33  Identities=27%  Similarity=0.575  Sum_probs=21.4

Q ss_pred             CCCccCCCCCCCCCCCccccCCc--eeecCCCccCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCE   43 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~   43 (95)
                      +.|.+-.|...+.    |....+  .|.|+++|+|.+|+
T Consensus         4 d~C~~~pC~ngg~----C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            4 DQCESNPCLNGGS----CKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CTTTTCCCCTTCE----EEEETTEEEEECCTTCCSTTSC
T ss_pred             ccCCCCCCCCCCE----eEcCCCceEeECCCCCcCCccC
Confidence            4565545655443    644333  68899999998886

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=92.86  E-value=0.028  Score=35.48  Aligned_cols=34  Identities=29%  Similarity=0.696  Sum_probs=22.0

Q ss_pred             CCCccCCCCCCCCCCCccccCCc--eeecCCCccCCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCEM   44 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~~   44 (95)
                      +.|.+=.|...+    .|....+  .|.|++||+|..|+.
T Consensus        48 d~C~~~pC~n~g----~C~~~~g~y~C~C~~G~~G~~C~~   83 (142)
T 2c4f_L           48 DQCASSPCQNGG----SCKDQLQSYICFCLPAFEGRNCET   83 (142)
T ss_dssp             CGGGGCCCCTTC----EEEEETTEEEEECCTTEESTTSCE
T ss_pred             CcCcCCCcCCCC----EEeCCCCCEEeeCCCCccCCcccc
Confidence            445544455444    3655444  789999999998863

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=92.84  E-value=0.029  Score=40.92  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             ceeccCCCC-CCCCCCCC--ceeccCCCccccCCCCcCCCCCC
Q psy4720          55 CHPCNCPFT-AVCDSYTG--KLAQVLIQVVTFPNYPSCKLWYN   94 (95)
Q Consensus        55 C~~C~C~~~-~~C~~~tG--~C~c~~~~~~~~~~c~~c~~~~~   94 (95)
                      -..|.|+.+ ..|++.+|  +|.|..  ...|++|++|+++|+
T Consensus       267 ~G~C~CnGHA~~C~~~~g~~~C~C~H--nT~G~~Ce~C~p~y~  307 (338)
T 3tbd_A          267 IGRCKCNLHANLCSMREGSLQCECEH--NTTGPDCGKCKKNFR  307 (338)
T ss_dssp             EEEECCTTBCSCEEEETTEEEECCCT--TEESTTSCEECTTCB
T ss_pred             eccccccCCcCccCCCCCCceecCCC--CCCCCCCcccCcccc
Confidence            358999987 47988777  477655  899999999999996

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=92.69  E-value=0.067  Score=40.90  Aligned_cols=53  Identities=19%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             cccCCceeecCCCcc--CCCCCCCCCCccCCC----CceeccCCCCCCCCCCCCceeccC
Q psy4720          24 CEQFGGQCQCKPNVI--GRRCEMCATGYYGFP----DCHPCNCPFTAVCDSYTGKLAQVL   77 (95)
Q Consensus        24 C~~~~G~C~C~~g~~--G~~C~~C~~G~~g~~----~C~~C~C~~~~~C~~~tG~C~c~~   77 (95)
                      .-...|+|.|++||.  +..|..|++|||...    .|++|--+.. .-+..+..|.|..
T Consensus       258 w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~~~C~~CP~~S~-s~~~Gs~~C~C~n  316 (536)
T 3fl7_A          258 WLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL-PSPEGATSCECEE  316 (536)
T ss_dssp             BCCCBCCCEECTTEEEETTEEEECCTTEECCSCCSSCCEECCSSEE-CCCTTCSSCEECT
T ss_pred             EecccCcEeccCccccCCceeeecCCCCCcccCCCCccccCCCCCC-CCCCCccEEEEec
Confidence            334469999999997  678889999999642    6787743321 2233444566644

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=92.65  E-value=0.042  Score=32.21  Aligned_cols=26  Identities=8%  Similarity=-0.121  Sum_probs=18.0

Q ss_pred             CCCCCCCCCC----CCceeccCCCccccCCCC
Q psy4720          60 CPFTAVCDSY----TGKLAQVLIQVVTFPNYP   87 (95)
Q Consensus        60 C~~~~~C~~~----tG~C~c~~~~~~~~~~c~   87 (95)
                      |.+++.|...    .-+|.|..  ++.|.+|+
T Consensus        56 C~ngg~C~~~~~~~~~~C~C~~--G~~G~~Ce   85 (91)
T 1tpg_A           56 CFNGGTCQQALYFSDFVCQCPE--GFAGKSCE   85 (91)
T ss_dssp             SCTTCEEEEESSSSCEEEECCT--TCBSSSCC
T ss_pred             CCCCCEeecCCCCCCeEeECCC--CCcCCcCC
Confidence            4555667653    34688877  89998886

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=90.18  E-value=0.14  Score=34.94  Aligned_cols=50  Identities=26%  Similarity=0.470  Sum_probs=33.7

Q ss_pred             CceeecCCC------ccCCCCCC----CCCCccCCCCceeccCCCC--CCCCCCCCceeccCCCccccCCCCc
Q psy4720          28 GGQCQCKPN------VIGRRCEM----CATGYYGFPDCHPCNCPFT--AVCDSYTGKLAQVLIQVVTFPNYPS   88 (95)
Q Consensus        28 ~G~C~C~~g------~~G~~C~~----C~~G~~g~~~C~~C~C~~~--~~C~~~tG~C~c~~~~~~~~~~c~~   88 (95)
                      .|+|.|.++      |+|..|+.    |... .+    .+  |..+  +.|+  .|+|.|.+  ++.|..|+.
T Consensus       153 ~g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~-~g----~~--C~~~~~G~C~--~g~C~C~~--G~~G~~C~~  214 (217)
T 2p28_B          153 CGQCLCHTSDVPGKLIYGQYCECDTINCERY-NG----QV--CGGPGRGLCF--CGKCRCHP--GFEGSACQH  214 (217)
T ss_dssp             TTEEEECCCCSTTCCEESTTSCEESSCSCEE-TT----EE--TTCTTTEEEE--TTEEEECT--TEESTTSCE
T ss_pred             CCceECCCCCCCcccEECCCcccCCccCCCC-CC----CC--CCCCCCcEEe--CCeeECCC--CCccCCcCC
Confidence            478899999      58888862    3321 11    12  4444  7787  48999988  899998863

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=89.76  E-value=0.28  Score=24.86  Aligned_cols=16  Identities=31%  Similarity=0.781  Sum_probs=13.3

Q ss_pred             CceeecCCCccCCCCC
Q psy4720          28 GGQCQCKPNVIGRRCE   43 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~   43 (95)
                      +-.|.|+++|+|.+|+
T Consensus        25 ~~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A           25 SYTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             SEEEECCTTEETTTTC
T ss_pred             CEEEEcCCCCcCCcCC
Confidence            3478999999999886

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=88.55  E-value=0.43  Score=25.59  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             CCCccCCCCCCCCCCCccc------c-CCceeecCCCccCCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECE------Q-FGGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~------~-~~G~C~C~~g~~G~~C~~   44 (95)
                      +.|.+=.|...|.    |.      . ..-.|.|+++|+|.+|+.
T Consensus         9 ~eC~s~pC~NgGt----C~~~~~~d~~~~y~C~C~~g~~G~~CE~   49 (55)
T 3u7u_G            9 AEKEKTFCVNGGE----CFMVKDLSNPSRYLCKCPNEFTGDRCQN   49 (55)
T ss_dssp             CSTTTTTSCTTCE----EEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred             CCCcCCCCCCCCC----cCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence            3454444665554    62      1 234799999999999984

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=87.46  E-value=0.88  Score=28.66  Aligned_cols=21  Identities=29%  Similarity=0.737  Sum_probs=15.7

Q ss_pred             ccccCCc--eeecCCCccCCCCC
Q psy4720          23 ECEQFGG--QCQCKPNVIGRRCE   43 (95)
Q Consensus        23 ~C~~~~G--~C~C~~g~~G~~C~   43 (95)
                      .|....+  .|.|++||+|..|+
T Consensus        61 ~C~~~~~~y~C~C~~G~~G~~C~   83 (146)
T 1x7a_L           61 LCKDDINSYECWCQVGFEGKNCE   83 (146)
T ss_dssp             EEEECSSCEEEECCSSEESTTTC
T ss_pred             EeECCCCCEEEecCCCCcCCcCC
Confidence            3644433  78999999999886

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=87.45  E-value=0.3  Score=25.12  Aligned_cols=16  Identities=38%  Similarity=0.924  Sum_probs=13.5

Q ss_pred             ceeecCCCccCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEM   44 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~   44 (95)
                      -.|.|++||+|.+|+.
T Consensus        28 ~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A           28 NYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             EEEEECTTCSSTTSCC
T ss_pred             EEEECCCCCccCCCCc
Confidence            4689999999999874

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=85.61  E-value=1.2  Score=23.14  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=16.4

Q ss_pred             ceeecCCCccCCCCCCCCCCcc
Q psy4720          29 GQCQCKPNVIGRRCEMCATGYY   50 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~C~~G~~   50 (95)
                      -.|.|+++|+|.+|+.=...+|
T Consensus        29 ~~C~C~~G~~G~~Ce~~~~~~~   50 (53)
T 1egf_A           29 YTCNCVIGYSGDRCQTRDLRWW   50 (53)
T ss_dssp             EEEECCTTCCSSSSCCCSCCCC
T ss_pred             EEEECCCCCcCCcCCccCcccc
Confidence            4789999999999976444443

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=82.66  E-value=0.77  Score=24.71  Aligned_cols=15  Identities=40%  Similarity=1.167  Sum_probs=13.6

Q ss_pred             eeecCCCccCCCCCC
Q psy4720          30 QCQCKPNVIGRRCEM   44 (95)
Q Consensus        30 ~C~C~~g~~G~~C~~   44 (95)
                      .|.|++||+|.+|+.
T Consensus        34 ~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           34 SCECAIGFMGQRCEY   48 (58)
T ss_dssp             EEEECTTEESSSSCE
T ss_pred             EeECCCCCccCCCcc
Confidence            799999999999983

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=82.14  E-value=0.65  Score=24.21  Aligned_cols=15  Identities=40%  Similarity=1.167  Sum_probs=13.2

Q ss_pred             eeecCCCccCCCCCC
Q psy4720          30 QCQCKPNVIGRRCEM   44 (95)
Q Consensus        30 ~C~C~~g~~G~~C~~   44 (95)
                      .|.|+++|+|.+|+.
T Consensus        34 ~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           34 SCECAIGFMGQRCEY   48 (52)
T ss_dssp             EEECCTTEESTTSCE
T ss_pred             EEECCCCCcCCCCcc
Confidence            799999999999873

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=81.87  E-value=0.59  Score=24.55  Aligned_cols=16  Identities=44%  Similarity=0.989  Sum_probs=13.3

Q ss_pred             ceeecCCCccCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEM   44 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~   44 (95)
                      -.|.|.++|+|.+|+.
T Consensus        30 ~~C~C~~gy~G~RCe~   45 (50)
T 1iox_A           30 PSCVCDEGYIGARCER   45 (50)
T ss_dssp             EEECCCTTEETTTTCE
T ss_pred             eEEECCCCcccCCCCe
Confidence            4688999999999874

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=81.62  E-value=0.65  Score=24.51  Aligned_cols=18  Identities=33%  Similarity=0.768  Sum_probs=14.8

Q ss_pred             ceeecCCCccCCCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEMCA   46 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~C~   46 (95)
                      -.|.|+++|+|.+|+.=.
T Consensus        29 ~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           29 YACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             EEEEECTTEESTTSCEEC
T ss_pred             EEEecCCCCcCCCCCcCC
Confidence            478999999999998533

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=81.41  E-value=0.68  Score=28.48  Aligned_cols=41  Identities=22%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             CCCCCccCCCCce----ec---cCCCCCCCCCCCC--ceeccCCCccccCCCC
Q psy4720          44 MCATGYYGFPDCH----PC---NCPFTAVCDSYTG--KLAQVLIQVVTFPNYP   87 (95)
Q Consensus        44 ~C~~G~~g~~~C~----~C---~C~~~~~C~~~tG--~C~c~~~~~~~~~~c~   87 (95)
                      .|++||.|.. |.    +|   .|..++.|....|  +|.|..  ++.|.+|+
T Consensus        69 ~C~~G~~G~~-C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~--G~~G~~C~  118 (135)
T 2vj3_A           69 ICMPGYEGVH-CEVNTDECASSPCLHNGRCLDKINEFQCECPT--GFTGHLCQ  118 (135)
T ss_dssp             ECCTTEESSS-SCEECCTTTTCCSTTTCEEEECSSCEEEECCT--TEESSSSC
T ss_pred             eCCCCCcCCc-ceecCCcccCCCcCCCCEeECCCCCeEEECCC--CCcCCccC
Confidence            4666666633 21    12   1333345554443  555555  66666554

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=80.97  E-value=0.54  Score=25.40  Aligned_cols=16  Identities=38%  Similarity=1.020  Sum_probs=13.9

Q ss_pred             CceeecCCCccCCCCC
Q psy4720          28 GGQCQCKPNVIGRRCE   43 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~   43 (95)
                      .-.|.|++||+|.+|+
T Consensus        31 ~y~C~C~~Gf~G~~Ce   46 (63)
T 1hae_A           31 RYLCKCQPGFTGARCT   46 (63)
T ss_dssp             CEEEECCTTEESTTSC
T ss_pred             CEEEECCCCCcCCccC
Confidence            3479999999999997

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=80.51  E-value=0.78  Score=24.20  Aligned_cols=16  Identities=38%  Similarity=0.991  Sum_probs=12.7

Q ss_pred             ceeecCCCccCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEM   44 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~   44 (95)
                      -.|.|.+||+|.+|+.
T Consensus        30 ~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           30 PACVCHSGYVGARCEH   45 (50)
T ss_pred             eEEECCCCCcccCCCc
Confidence            4788888888888863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1kloa3	51	g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (	3e-10
d1kloa2	56	g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M	8e-07

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 3e-10
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 12 CQCDIDGSKSF--ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 58
          C C+  G+      C    GQCQC P+V GR C  C  GYY       C
Sbjct: 1  CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 8e-07
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP----DCHPC 58
          C  +ID +    C +  G+C +C  N  G  C+ C  G++G P        C
Sbjct: 3  CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	99.33
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	99.16
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.5
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.48
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.29
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	95.15
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	94.61
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.39
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	94.15
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	93.74
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	93.59
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	92.76
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	91.94
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	91.62
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	91.23
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	91.02
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	90.88
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	89.06
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	86.12
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	84.04
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	82.38
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	82.24

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.7e-13  Score=73.94  Aligned_cols=46  Identities=39%  Similarity=0.964  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCC--ccccCCceeecCCCccCCCCCCCCCCccCCCCcee
Q psy4720          12 CQCDIDGSKSF--ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHP   57 (95)
Q Consensus        12 C~C~~~gs~~~--~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~   57 (95)
                      |+|++.|++..  .|++.+|+|.|+++++|++|++|++|||+++..+.
T Consensus         1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v~G~~Cd~C~~g~~~~~~~~g   48 (51)
T d1kloa3           1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQG   48 (51)
T ss_dssp             CCCCTTTBGGGCCCCCTTTCCCCBCTTEESTTCCEECTTCBCGGGSSC
T ss_pred             CcCCCCcccCCCCccCCCCCeecCCCCCcCCCcccccccccCCCCCCC
Confidence            68999998753  69999999999999999999999999999874433

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4e-12  Score=69.58  Aligned_cols=42  Identities=33%  Similarity=0.888  Sum_probs=34.6

Q ss_pred             CCCCCCCC--CCCccccCCceee-cCCCccCCCCCCCCCCccCCC
Q psy4720          12 CQCDIDGS--KSFECEQFGGQCQ-CKPNVIGRRCEMCATGYYGFP   53 (95)
Q Consensus        12 C~C~~~gs--~~~~C~~~~G~C~-C~~g~~G~~C~~C~~G~~g~~   53 (95)
                      |+|+.++.  ....|++.+|+|+ |++++.|++|++|++||||++
T Consensus         1 C~Cn~~~~~~~~~~Cd~~tG~C~~C~~nt~G~~Cd~C~~G~yg~~   45 (56)
T d1kloa2           1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP   45 (56)
T ss_dssp             CCSTTCBCTTCSCCBCTTTCCBCCBCTTEETTTTCEECTTEEECT
T ss_pred             CcCCCCCCCcccCccCCCCCCCCCCCCCCCCCCcCcccCCcccCC
Confidence            45665543  3357999999995 999999999999999999975

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.6e-08  Score=54.62  Aligned_cols=42  Identities=33%  Similarity=0.813  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCccccCCcee-ecCCCccCCCCCCCCCCccCCC
Q psy4720          12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP   53 (95)
Q Consensus        12 C~C~~~gs~~~~C~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~   53 (95)
                      |.|+..++.....+...+.| .|+++++|++|++|++||||.|
T Consensus         1 CpC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P   43 (55)
T d1kloa1           1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDP   43 (55)
T ss_dssp             CCSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEET
T ss_pred             CcCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCccccCc
Confidence            45665554221223345678 5999999999999999999976

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=3.6e-08  Score=52.38  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=26.3

Q ss_pred             CCCCCCCCceeccCCCccccCCCCcCCCCC
Q psy4720          64 AVCDSYTGKLAQVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        64 ~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~   93 (95)
                      ..||++||+|.|++  +|+|.+|++|+++|
T Consensus        13 ~~Cd~~tGqC~Ck~--~v~G~~Cd~C~~g~   40 (51)
T d1kloa3          13 SSCNPVTGQCQCLP--HVSGRDCGTCDPGY   40 (51)
T ss_dssp             CCCCTTTCCCCBCT--TEESTTCCEECTTC
T ss_pred             CccCCCCCeecCCC--CCcCCCcccccccc
Confidence            36999999999999  99999999999998

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.4e-07  Score=50.89  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=25.9

Q ss_pred             CCCCCCCCcee-ccCCCccccCCCCcCCCCC
Q psy4720          64 AVCDSYTGKLA-QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        64 ~~C~~~tG~C~-c~~~~~~~~~~c~~c~~~~   93 (95)
                      ..||++||+|+ |+.  .++|.+|++|+++|
T Consensus        13 ~~Cd~~tG~C~~C~~--nt~G~~Cd~C~~G~   41 (56)
T d1kloa2          13 GNCNRLTGECLKCIY--NTAGFYCDRCKEGF   41 (56)
T ss_dssp             CCBCTTTCCBCCBCT--TEETTTTCEECTTE
T ss_pred             CccCCCCCCCCCCCC--CCCCCCcCcccCCc
Confidence            46999999996 998  99999999999998

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0041  Score=32.49  Aligned_cols=22  Identities=9%  Similarity=-0.164  Sum_probs=16.5

Q ss_pred             CCcee-ccCCCccccCCCCcCCCCC
Q psy4720          70 TGKLA-QVLIQVVTFPNYPSCKLWY   93 (95)
Q Consensus        70 tG~C~-c~~~~~~~~~~c~~c~~~~   93 (95)
                      ++.|. |+.  +++|.+|++|+.+|
T Consensus        17 ~~vC~~C~~--~~~G~~Ce~C~~g~   39 (55)
T d1kloa1          17 EVVCTHCPT--GTAGKRCELCDDGY   39 (55)
T ss_dssp             CEEECSCCT--TEESTTSCEECTTE
T ss_pred             CEEcCCCCC--CCccCcccccCCcc
Confidence            34453 665  89999999998887

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.017  Score=28.00  Aligned_cols=34  Identities=32%  Similarity=0.699  Sum_probs=22.8

Q ss_pred             CCCccCCCCCCCCCCCccccC--CceeecCCCccCCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~~   44 (95)
                      +.|.+=.|...|.    |...  +-+|.|+++|+|.+|+.
T Consensus         2 d~C~~~PC~n~g~----C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           2 NECVSNPCQNDAT----CLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CTTTTCCCCSSCE----EEECSSCEEEECCTTEESSSSCE
T ss_pred             cCCcCCCCCCCCE----EECCCCCEEEeCCCCCccCcCee
Confidence            3455555666554    5433  34789999999999873

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.021  Score=27.64  Aligned_cols=34  Identities=26%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             CCCccCCCCCCCCCCCccccC--CceeecCCCccCCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~~   44 (95)
                      +.|.+=.|...|+    |...  .-+|.|+++|+|++|+.
T Consensus         4 d~C~~~PC~ngg~----C~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           4 DQCESNPCLNGGS----CKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CTTTTCCCCTTCE----EEEETTEEEEECCTTCCSTTSCC
T ss_pred             ccCCCCCCCCCcE----EEcCCCCEEEECCCCCCCCCCCC
Confidence            5566656766665    5333  23789999999999873

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.026  Score=27.33  Aligned_cols=33  Identities=24%  Similarity=0.666  Sum_probs=21.6

Q ss_pred             CCccCCCCCCCCCCCccccC--CceeecCCCccCCCCCC
Q psy4720           8 EALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         8 ~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~~   44 (95)
                      .|.+=.|...|+    |...  .-.|.|+++|+|.+|+.
T Consensus         2 ~C~~~PC~ngg~----C~~~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           2 QCETSPCQNQGK----CKDGLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             TTTTCCCCSSCE----ECCCSSSCCEECCTTEETTTTCE
T ss_pred             cCCCCCCCCCcE----EECCCCCEEEECCCCCCcCcCeE
Confidence            354445666554    4332  34789999999999874

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.03  Score=26.38  Aligned_cols=32  Identities=28%  Similarity=0.650  Sum_probs=20.7

Q ss_pred             CCccCCCCCCCCCCCccccC--CceeecCCCccCCCCC
Q psy4720           8 EALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCE   43 (95)
Q Consensus         8 ~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~   43 (95)
                      .|.+=.|...|.    |...  +-+|.|+++|+|.+|+
T Consensus         2 ~C~~~PC~ngg~----C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           2 ECASSPCLHNGR----CLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             TTTTCCSTTTCE----EEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCcE----EECCCCCeEEECCCCCCCCCcC
Confidence            354445665554    4332  3478999999999885

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.59  E-value=0.024  Score=27.09  Aligned_cols=33  Identities=33%  Similarity=0.713  Sum_probs=22.0

Q ss_pred             CCCccCCCCCCCCCCCccccCC--ceeecCCCccCCCCC
Q psy4720           7 HEALPCQCDIDGSKSFECEQFG--GQCQCKPNVIGRRCE   43 (95)
Q Consensus         7 ~~C~~C~C~~~gs~~~~C~~~~--G~C~C~~g~~G~~C~   43 (95)
                      +.|.+=.|...+.    |....  -.|+|+++|+|.+|+
T Consensus         3 d~C~~~PC~ngg~----C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           3 DQCASSPCQNGGS----CKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CGGGGCCCCTTCE----EEEETTEEEEECCTTEESTTSC
T ss_pred             ccCCCCCCCCCCE----EECCCCCeEEECCCCCcCCCCC
Confidence            4455555666554    53332  378999999999885

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.063  Score=26.10  Aligned_cols=21  Identities=43%  Similarity=0.952  Sum_probs=16.0

Q ss_pred             ccccCCc--eeecCCCccCCCCC
Q psy4720          23 ECEQFGG--QCQCKPNVIGRRCE   43 (95)
Q Consensus        23 ~C~~~~G--~C~C~~g~~G~~C~   43 (95)
                      .|....|  .|.|++||+|++|+
T Consensus        18 ~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1          18 KCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             EEEECSSSEEEECCTTEESTTSC
T ss_pred             EeECCCCCEEeECCCCCcCCCCc
Confidence            3655444  88999999999886

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.057  Score=26.23  Aligned_cols=16  Identities=38%  Similarity=0.922  Sum_probs=13.8

Q ss_pred             ceeecCCCccCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEM   44 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~   44 (95)
                      -.|.|+++|.|.+|+.
T Consensus        21 y~C~C~~g~~G~~Ce~   36 (41)
T d1tpga1          21 FVCQCPEGFAGKSCEI   36 (41)
T ss_dssp             EEEECCTTCBSSSCCB
T ss_pred             eEECCCCCCCCCCcCc
Confidence            3799999999999974

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.034  Score=26.98  Aligned_cols=33  Identities=27%  Similarity=0.701  Sum_probs=21.1

Q ss_pred             CCccCCCCCCCCCCCccccC--CceeecCCCccCCCCCC
Q psy4720           8 EALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus         8 ~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~~   44 (95)
                      .|.+=.|...|.    |...  .-.|.|+++|+|++|+.
T Consensus         3 ~C~~~pC~ngg~----C~~~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           3 SCQDMSCSKQGE----CLETIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCCTTGGGGSEE----EEECSSSEEEEECTTEESTTSCE
T ss_pred             cccCCcCCCCcE----EECCCCCeEEeCCCCccCCCCCC
Confidence            344444555553    4322  34789999999999975

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.032  Score=26.89  Aligned_cols=33  Identities=27%  Similarity=0.665  Sum_probs=20.5

Q ss_pred             CCccCCCCCCCCCCCccccCC--ceeecCCCccCCCCCC
Q psy4720           8 EALPCQCDIDGSKSFECEQFG--GQCQCKPNVIGRRCEM   44 (95)
Q Consensus         8 ~C~~C~C~~~gs~~~~C~~~~--G~C~C~~g~~G~~C~~   44 (95)
                      .|.+=.|...|.    |....  -.|.|+++|.|.+|+.
T Consensus         3 ~C~~~pC~ngg~----C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           3 ACTNTSCSGHGE----CVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             CCCTTGGGGSEE----EEEETTEEEEEECTTEESTTSCE
T ss_pred             cccCCcCCCCcE----EECCCCCEEEeCCCCCcCcCcCc
Confidence            344434555553    43322  3689999999999873

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.067  Score=26.44  Aligned_cols=19  Identities=42%  Similarity=1.088  Sum_probs=15.9

Q ss_pred             CceeecC-CCccCCCCCCCC
Q psy4720          28 GGQCQCK-PNVIGRRCEMCA   46 (95)
Q Consensus        28 ~G~C~C~-~g~~G~~C~~C~   46 (95)
                      -|+|+|. ++|.|+.|+.|+
T Consensus        21 cG~C~C~~~gy~G~~Ce~Cp   40 (43)
T d1jv2b5          21 CGSCVCIQPGSYGDTCEKCP   40 (43)
T ss_dssp             TTEEEECCSSCBSTTSCBCT
T ss_pred             CCEeEeCCCCccCCccccCC
Confidence            4889995 799999999875

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.054  Score=26.51  Aligned_cols=19  Identities=37%  Similarity=1.059  Sum_probs=15.7

Q ss_pred             ccccCCceeecCCCccCCCCC
Q psy4720          23 ECEQFGGQCQCKPNVIGRRCE   43 (95)
Q Consensus        23 ~C~~~~G~C~C~~g~~G~~C~   43 (95)
                      .|.  .|+|.|.++|+|..|+
T Consensus        22 ~C~--~G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          22 LCF--CGKCRCHPGFEGSACQ   40 (41)
T ss_dssp             EEE--TTEEEECTTCCTTTTC
T ss_pred             eEE--CCEEEcCCCCcccCcc
Confidence            463  4899999999999886

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.06  E-value=0.28  Score=24.88  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=17.1

Q ss_pred             CceeecCCCccCCCCCCCCCCcc
Q psy4720          28 GGQCQCKPNVIGRRCEMCATGYY   50 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~C~~G~~   50 (95)
                      .-+|.|+++|+|.+|+.=...+|
T Consensus        28 ~~~C~C~~gy~G~~Ce~~~l~~w   50 (53)
T d3egfa_          28 SYTCNCVIGYSGDRCQTRDLRWW   50 (53)
T ss_dssp             CEEEECCTTCCSSSSCCCSCCCC
T ss_pred             CeEeECCCCCcCCCCccCCccce
Confidence            35899999999999985444444

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.12  E-value=0.33  Score=24.21  Aligned_cols=16  Identities=31%  Similarity=0.764  Sum_probs=13.5

Q ss_pred             ceeecCCCccCCCCCC
Q psy4720          29 GQCQCKPNVIGRRCEM   44 (95)
Q Consensus        29 G~C~C~~g~~G~~C~~   44 (95)
                      -.|.|++||.|.+|++
T Consensus        28 y~C~C~~G~~G~~Ce~   43 (48)
T d1autl1          28 FSCDCRSGWEGRFCQR   43 (48)
T ss_dssp             CCEEECTTEESTTSCE
T ss_pred             CeEeCCCCCcCCCccc
Confidence            4789999999999874

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.25  Score=24.50  Aligned_cols=17  Identities=35%  Similarity=0.851  Sum_probs=13.6

Q ss_pred             CceeecCCCccCCCCCC
Q psy4720          28 GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~   44 (95)
                      .-.|.|.++|+|.+|+.
T Consensus        27 ~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          27 QNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             EEEEEECTTCSSTTSCC
T ss_pred             ccEeECCCCceecCcee
Confidence            35689999999998864

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.38  E-value=0.29  Score=24.57  Aligned_cols=17  Identities=35%  Similarity=0.911  Sum_probs=14.0

Q ss_pred             CceeecCCCccCCCCCC
Q psy4720          28 GGQCQCKPNVIGRRCEM   44 (95)
Q Consensus        28 ~G~C~C~~g~~G~~C~~   44 (95)
                      .-.|.|+++|+|.+|+.
T Consensus        28 ~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          28 KPACVCHSGYVGARCEH   44 (49)
T ss_dssp             EEEEEECTTEESTTSCE
T ss_pred             CcEeECCCCCEecCCcc
Confidence            35789999999999873

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.29  Score=25.51  Aligned_cols=15  Identities=40%  Similarity=1.154  Sum_probs=13.7

Q ss_pred             eeecCCCccCCCCCC
Q psy4720          30 QCQCKPNVIGRRCEM   44 (95)
Q Consensus        30 ~C~C~~g~~G~~C~~   44 (95)
                      .|.|+++|+|.+|+.
T Consensus        33 ~C~C~~gy~G~~Ce~   47 (63)
T d1haea_          33 LCKCQPGFTGARCTE   47 (63)
T ss_dssp             EEECCTTEESTTSCE
T ss_pred             EeECCCCCCCCCcCC
Confidence            799999999999984