Psyllid ID: psy4746

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MLTNHEQHCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
ccccccHHHHcccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEcccEEEEcHHHHHHHccccccHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHEEEEEcc
ccccccccccEEccccccccccHccccccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEEEEHEHEccccccccccHHHHHHHHHHHHHHHHHHHHHccc
mltnheqhcltsvnnwelstcyqrwltpfhyCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYncfviplrvtfpyqtrsnliTWFVFDYVMDVIYILDLLLIkprliylddgfwikdskLTRIQYRRKLQYKNDLLSLMPFDLLYFVfgfectflrlprlIKIQTFWEFCNhfdsvlaspYVVRVARTLTYMIYLVHLNACAYYEISVREGlginswvydgkgnAYIRCFYFATKtatsigknprptneMEYVFMTVSWLLGVFVFAVLIGQ
MLTNHEQHCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIylddgfwikdskLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKtatsigknprpTNEMEYVFMTVSWLLGVFVFAVLIGQ
MLTNHEQHCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
*******HCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLI**
*******HCLTSVNNWELSTCYQRWLTPFHYCSQIR***************************************WFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
********CLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
*L**HEQHCLTSVNNWELSTCY**************************************************VKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
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MLTNHEQHCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
Q8MJD7 782 Cyclic nucleotide-gated c yes N/A 0.687 0.276 0.447 2e-52
Q9JJZ9 694 Cyclic nucleotide-gated c yes N/A 0.710 0.321 0.446 3e-52
Q28181 1394 Cyclic nucleotide-gated c no N/A 0.710 0.159 0.468 3e-52
Q14028 1251 Cyclic nucleotide-gated c yes N/A 0.710 0.178 0.455 2e-51
Q9NQW8 809 Cyclic nucleotide-gated c no N/A 0.678 0.263 0.439 1e-49
Q90980 645 Cyclic nucleotide-gated c no N/A 0.719 0.350 0.348 8e-38
Q28718 664 Cyclic nucleotide-gated o no N/A 0.719 0.340 0.353 2e-37
Q62398 664 Cyclic nucleotide-gated o no N/A 0.719 0.340 0.344 4e-37
Q62927 683 cGMP-gated cation channel no N/A 0.719 0.330 0.361 5e-37
P55934 682 Cyclic nucleotide-gated c N/A N/A 0.748 0.344 0.364 5e-37
>sp|Q8MJD7|CNGB3_CANFA Cyclic nucleotide-gated cation channel beta-3 OS=Canis familiaris GN=CNGB3 PE=1 SV=1 Back     alignment and function desciption
 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 144/217 (66%), Gaps = 1/217 (0%)

Query: 98  VTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWI 157
           VT++Y +NC++IPLR+ FPYQT  N   WF+ D   D+IY+ D+LLI+PRL ++  G  +
Sbjct: 220 VTIAYNWNCWLIPLRLVFPYQTPDNTHYWFITDITCDIIYLCDMLLIQPRLQFIKGGDIM 279

Query: 158 KDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDS 217
            DS   +  YR   +++ D+ S+MPFD+ Y  FGF   F R+ R++K  +F+EF +H +S
Sbjct: 280 VDSNELKRHYRSSTKFQLDVASVMPFDVFYLFFGFNPVF-RMNRILKYTSFFEFNHHLES 338

Query: 218 VLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATK 277
           ++   Y+ RV RT  Y++Y +H+NAC YY  S  EG+G   WVY+G+GN Y+RC+Y+A +
Sbjct: 339 IMDKAYIYRVIRTTGYLLYTLHINACIYYWASDYEGIGSTKWVYNGEGNKYLRCYYWAVR 398

Query: 278 TATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314
           T  +IG  P P    E VF  +++  GVFVF+ LIGQ
Sbjct: 399 TLITIGGLPEPQTSFEIVFQLLNFFSGVFVFSSLIGQ 435
Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGA3. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.
Canis familiaris (taxid: 9615)
>sp|Q9JJZ9|CNGB3_MOUSE Cyclic nucleotide-gated cation channel beta-3 OS=Mus musculus GN=Cngb3 PE=1 SV=1 Back     alignment and function description
>sp|Q28181|CNGB1_BOVIN Cyclic nucleotide-gated cation channel beta-1 OS=Bos taurus GN=CNGB1 PE=1 SV=1 Back     alignment and function description
>sp|Q14028|CNGB1_HUMAN Cyclic nucleotide-gated cation channel beta-1 OS=Homo sapiens GN=CNGB1 PE=1 SV=2 Back     alignment and function description
>sp|Q9NQW8|CNGB3_HUMAN Cyclic nucleotide-gated cation channel beta-3 OS=Homo sapiens GN=CNGB3 PE=1 SV=2 Back     alignment and function description
>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q28718|CNGA2_RABIT Cyclic nucleotide-gated olfactory channel OS=Oryctolagus cuniculus GN=CNGA2 PE=2 SV=1 Back     alignment and function description
>sp|Q62398|CNGA2_MOUSE Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2 PE=2 SV=2 Back     alignment and function description
>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1 PE=2 SV=1 Back     alignment and function description
>sp|P55934|CNG_ICTPU Cyclic nucleotide-gated cation channel OS=Ictalurus punctatus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
242019392 630 Cyclic nucleotide-gated cation channel b 0.722 0.360 0.675 2e-84
189237341 1050 PREDICTED: similar to CG17922 CG17922-PA 0.722 0.216 0.581 4e-83
328715146 596 PREDICTED: cyclic nucleotide-gated catio 0.777 0.409 0.573 5e-80
357621750 678 hypothetical protein KGM_03650 [Danaus p 0.722 0.334 0.607 1e-79
270007574 686 hypothetical protein TcasGA2_TC014251 [T 0.722 0.330 0.581 8e-79
195346529 1038 GM15693 [Drosophila sechellia] gi|194135 0.722 0.218 0.581 7e-75
195585526 1038 GD25172 [Drosophila simulans] gi|1941945 0.722 0.218 0.581 8e-75
194882000 1038 GG20750 [Drosophila erecta] gi|190658288 0.722 0.218 0.581 9e-75
195486384 1039 GE13682 [Drosophila yakuba] gi|194177587 0.722 0.218 0.581 9e-75
195381981 1053 GJ20605 [Drosophila virilis] gi|19414450 0.722 0.215 0.572 3e-74
>gi|242019392|ref|XP_002430145.1| Cyclic nucleotide-gated cation channel beta, putative [Pediculus humanus corporis] gi|212515236|gb|EEB17407.1| Cyclic nucleotide-gated cation channel beta, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/228 (67%), Positives = 182/228 (79%), Gaps = 1/228 (0%)

Query: 88  GYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPR 147
           G  YI WL +VTL++LYNC+VIPLR +F YQT  N+  W  FDY  DVIY+LDLL  KPR
Sbjct: 72  GKTYIIWLFVVTLAFLYNCWVIPLRSSFYYQTSENVNKWLAFDYACDVIYLLDLLFFKPR 131

Query: 148 LIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFE-CTFLRLPRLIKIQ 206
           ++YL DGFWIKDSKLTRI Y  K+Q+K D+LSL+P DLL   +G +     RLPR +K+Q
Sbjct: 132 VMYLSDGFWIKDSKLTRIMYFHKVQFKMDVLSLIPLDLLCLKYGTDYLPIFRLPRFLKVQ 191

Query: 207 TFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGN 266
           TFWEF N  D+V+AS YVVRV RTL YM+YL+HLNACAYY  SV EGLG N+WV++GKGN
Sbjct: 192 TFWEFYNRCDNVVASGYVVRVVRTLNYMLYLIHLNACAYYAFSVWEGLGTNAWVFNGKGN 251

Query: 267 AYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314
           AYIRCFYFATKTATSIGKNP+P N  EY+FMT SWL+GVFVFA+LIGQ
Sbjct: 252 AYIRCFYFATKTATSIGKNPKPENVFEYMFMTWSWLMGVFVFALLIGQ 299

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189237341|ref|XP_967257.2| PREDICTED: similar to CG17922 CG17922-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328715146|ref|XP_001949293.2| PREDICTED: cyclic nucleotide-gated cation channel beta-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357621750|gb|EHJ73478.1| hypothetical protein KGM_03650 [Danaus plexippus] Back     alignment and taxonomy information
>gi|270007574|gb|EFA04022.1| hypothetical protein TcasGA2_TC014251 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195346529|ref|XP_002039810.1| GM15693 [Drosophila sechellia] gi|194135159|gb|EDW56675.1| GM15693 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195585526|ref|XP_002082532.1| GD25172 [Drosophila simulans] gi|194194541|gb|EDX08117.1| GD25172 [Drosophila simulans] Back     alignment and taxonomy information
>gi|194882000|ref|XP_001975101.1| GG20750 [Drosophila erecta] gi|190658288|gb|EDV55501.1| GG20750 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195486384|ref|XP_002091486.1| GE13682 [Drosophila yakuba] gi|194177587|gb|EDW91198.1| GE13682 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195381981|ref|XP_002049711.1| GJ20605 [Drosophila virilis] gi|194144508|gb|EDW60904.1| GJ20605 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
FB|FBgn0034656 1040 CG17922 [Drosophila melanogast 0.722 0.218 0.581 1.8e-76
WB|WBGene00006525 800 tax-2 [Caenorhabditis elegans 0.866 0.34 0.442 2.3e-64
UNIPROTKB|F1NBG5 718 F1NBG5 "Uncharacterized protei 0.710 0.310 0.464 1.1e-55
UNIPROTKB|F1Q3J5 782 CNGB3 "Cyclic nucleotide-gated 0.710 0.285 0.450 7.8e-55
UNIPROTKB|Q8MJD7 782 CNGB3 "Cyclic nucleotide-gated 0.710 0.285 0.450 7.8e-55
UNIPROTKB|F1RXD6 686 CNGB3 "Uncharacterized protein 0.713 0.326 0.457 7.8e-55
UNIPROTKB|J9NRR5 807 CNGB3 "Cyclic nucleotide-gated 0.710 0.276 0.450 9.1e-55
UNIPROTKB|F1MZC9 694 CNGB3 "Uncharacterized protein 0.713 0.322 0.453 2.6e-54
UNIPROTKB|Q9NQW8 809 CNGB3 "Cyclic nucleotide-gated 0.710 0.275 0.450 6.6e-54
MGI|MGI:1353562 694 Cngb3 "cyclic nucleotide gated 0.710 0.321 0.446 1e-52
FB|FBgn0034656 CG17922 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 747 (268.0 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 132/227 (58%), Positives = 173/227 (76%)

Query:    88 GYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPR 147
             G  YISWLC+V+LS+LYN +VIPLR +FP+QT+ N   W   D+  D+IY+LD++  K R
Sbjct:   465 GKIYISWLCVVSLSFLYNAWVIPLRASFPFQTKENTNIWLACDFCADIIYLLDVVFFKHR 524

Query:   148 LIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQT 207
             ++YL +GFW+K+  LTR  Y RKLQ+K DLL+L+P +LLYF  G +  +LR PR  KIQ+
Sbjct:   525 VMYLFEGFWVKNKNLTRKNYMRKLQFKLDLLALLPLELLYFKLGTQAVWLRFPRFFKIQS 584

Query:   208 FWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNA 267
             FWE     D V++SP+ VRVA+TLTYM+Y++H+ A  YY  S  +GLG N WV+ GKG+ 
Sbjct:   585 FWEVFRLLDRVISSPHFVRVAKTLTYMLYMIHITAALYYAYSDYQGLGQNRWVFSGKGHP 644

Query:   268 YIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314
             Y+RCF FATKTATSIGKNP+P  + EYVFMTV+WL+GVFVFA+LIGQ
Sbjct:   645 YVRCFAFATKTATSIGKNPKPERQGEYVFMTVAWLMGVFVFALLIGQ 691
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS
GO:0017071 "intracellular cyclic nucleotide activated cation channel complex" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
WB|WBGene00006525 tax-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBG5 F1NBG5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3J5 CNGB3 "Cyclic nucleotide-gated cation channel beta-3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MJD7 CNGB3 "Cyclic nucleotide-gated cation channel beta-3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXD6 CNGB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRR5 CNGB3 "Cyclic nucleotide-gated cation channel beta-3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZC9 CNGB3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQW8 CNGB3 "Cyclic nucleotide-gated cation channel beta-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1353562 Cngb3 "cyclic nucleotide gated channel beta 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 2e-08
pfam00520194 pfam00520, Ion_trans, Ion transport protein 5e-05
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information 
 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 44/257 (17%)

Query: 90  WYIS--------WLCLVTLSYLYNCFVIPLRVTFPYQT-RSNLITWFVFDYVMDVIYILD 140
           W IS        W  L+ +   Y+ +V P  V F   + +  L    + D V+D+ + +D
Sbjct: 52  WIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGL---EIADNVVDLFFAVD 108

Query: 141 LLL------IKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFEC 194
           ++L      I PR   L     ++D K   ++Y     +  D+ S +PF  L ++     
Sbjct: 109 IVLTFFVAYIDPRTQLL-----VRDRKKIAVRYLSTW-FLMDVASTIPFQALAYLITGTV 162

Query: 195 T---------FLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAY 245
                      LR  RL +++    F      +  S + +R AR L+  ++LVH   C Y
Sbjct: 163 KLNLSYSLLGLLRFWRLRRVKQL--FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLY 220

Query: 246 YEISVREGLGINSWVYDGKGN--------AYIRCFYFATKTATSIG-KNPRPTNEMEYVF 296
           Y I+ R      +W+     N         YI   Y++  T T++G  +    N +E +F
Sbjct: 221 YLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280

Query: 297 MTVSWLLGVFVFAVLIG 313
           +    L  + + A LIG
Sbjct: 281 IIFYMLFNLGLTAYLIG 297

Length = 823
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0498|consensus 727 100.0
KOG0499|consensus 815 100.0
KOG0501|consensus 971 100.0
KOG0500|consensus 536 100.0
KOG0500|consensus536 99.86
KOG0499|consensus815 99.84
KOG3713|consensus477 99.75
KOG1545|consensus507 99.5
KOG4390|consensus 632 99.42
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.39
KOG1419|consensus 654 99.28
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.12
KOG0498|consensus 727 98.7
KOG1420|consensus 1103 98.69
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.64
PRK10537 393 voltage-gated potassium channel; Provisional 98.55
PLN03192 823 Voltage-dependent potassium channel; Provisional 97.97
PF01007 336 IRK: Inward rectifier potassium channel; InterPro: 97.82
KOG1418|consensus 433 97.11
KOG3684|consensus 489 96.61
KOG0501|consensus 971 96.24
KOG4404|consensus 350 96.06
KOG2302|consensus 1956 95.68
KOG3827|consensus 400 95.63
KOG3193|consensus 1087 94.62
KOG4404|consensus 350 93.91
KOG2301|consensus 1592 93.59
KOG1418|consensus 433 93.11
KOG2301|consensus 1592 89.04
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 80.42
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-41  Score=344.67  Aligned_cols=231  Identities=23%  Similarity=0.399  Sum_probs=198.2

Q ss_pred             cceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecC--CeEE
Q psy4746          80 TWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDD--GFWI  157 (314)
Q Consensus        80 ~~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~--g~iv  157 (314)
                      .+++|+|.|++++.||.++++.++|+++++|++++|.....  ...+..+|.++|++|++|+++ +|+++|+++  +.+|
T Consensus        50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~--~~~~~~~d~i~~~~F~iDi~l-~f~~ay~d~~~~~lV  126 (823)
T PLN03192         50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASP--KRGLEIADNVVDLFFAVDIVL-TFFVAYIDPRTQLLV  126 (823)
T ss_pred             CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCC--CCCeeeHHHHHHHHHHHHHHh-heeEEEEeCCCcEEE
Confidence            35599999999999999999999999999999999964322  224668899999999999997 899999974  4799


Q ss_pred             echHHHHHHHHhcccchhhhcccchhHHHHHhhccc------cceeeehhhhhHhHHHHHHHHHHHhhhh-HHHHHHHHH
Q psy4746         158 KDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFE------CTFLRLPRLIKIQTFWEFCNHFDSVLAS-PYVVRVART  230 (314)
Q Consensus       158 ~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~------~~~lrl~rllr~~r~~~~~~~l~~~~~~-~~~~~l~~l  230 (314)
                      .|+++|+++|+++ ||++|++|++|++.+.......      ..++|++|++|+.|+.++++++++.... ...++++|+
T Consensus       127 ~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kl  205 (823)
T PLN03192        127 RDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARL  205 (823)
T ss_pred             eCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999998 9999999999999875433221      1466777888888888888888876553 346799999


Q ss_pred             HHHHHHHHHHHHHHhHHhHhhccCCCCccccc--------CchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHH
Q psy4746         231 LTYMIYLVHLNACAYYEISVREGLGINSWVYD--------GKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSW  301 (314)
Q Consensus       231 ~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~--------~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~  301 (314)
                      ++.+++++||+||+||+++.....++++|+..        +++.+|+.|+|||++||||||| |++|.|..|+++++++|
T Consensus       206 i~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~m  285 (823)
T PLN03192        206 LSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYM  285 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHH
Confidence            99999999999999999997655556789853        5688999999999999999995 99999999999999999


Q ss_pred             HHHHHHhhhhccC
Q psy4746         302 LLGVFVFAVLIGQ  314 (314)
Q Consensus       302 l~G~~~~a~iiG~  314 (314)
                      ++|++++|+++|+
T Consensus       286 l~g~~~~a~~ig~  298 (823)
T PLN03192        286 LFNLGLTAYLIGN  298 (823)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985

>KOG0498|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3ukn_A212 Novel protein similar to vertebrate potassium VOL 6e-09
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 1e-07
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 3e-07
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 38 IIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQH 85
          +       ++ Y     +  D++R   +P  + +R+ + F  TW   +
Sbjct: 3  MDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNN 50
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.9
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.8
3beh_A 355 MLL3241 protein; transmembrane protein, membrane p 99.79
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.67
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.6
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.35
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.34
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.32
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.26
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.26
2q67_A114 Potassium channel protein; inverted teepee, helix 99.25
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.25
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.24
1xl4_A 301 Inward rectifier potassium channel; integral membr 99.02
1p7b_A 333 Integral membrane channel and cytosolic domains; t 98.96
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.95
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.87
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.77
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 98.73
3sya_A 340 G protein-activated inward rectifier potassium CH; 98.72
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.62
3um7_A 309 Potassium channel subfamily K member 4; potassium 98.6
3ukm_A 280 Potassium channel subfamily K member 1; membrane p 98.49
3um7_A309 Potassium channel subfamily K member 4; potassium 98.42
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.36
1lnq_A 336 MTHK channels, potassium channel related protein; 98.24
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 97.92
1ors_C132 Potassium channel; voltage-dependent, voltage sens 97.83
3ukn_A212 Novel protein similar to vertebrate potassium VOL 96.74
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 95.32
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 94.95
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 94.71
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 88.77
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
Probab=99.90  E-value=1.5e-23  Score=180.66  Aligned_cols=198  Identities=19%  Similarity=0.245  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhccc
Q psy4746          93 SWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQ  172 (314)
Q Consensus        93 ~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~  172 (314)
                      .||.++.+.++++.+........+ .+++....+..+|.+++.+|.+|+++ ++.++.            .+++|+++  
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~iF~~e~~l-r~~~~~------------~~~~y~~~--   72 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQ-LSGEYLVRLYLVDLILVIILWADYAY-RAYKSG------------DPAGYVKK--   72 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHHHHHHHH-HHHTTS------------CHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHHHH-HHcccc------------cHHHHHHH--
Confidence            478888888888888766543222 22334556778999999999999997 566531            14799986  


Q ss_pred             chhhhcccchhHHHHHh-hccc-cceeeehhhhhHhHHHHHHHHH---HHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4746         173 YKNDLLSLMPFDLLYFV-FGFE-CTFLRLPRLIKIQTFWEFCNHF---DSVL-ASPYVVRVARTLTYMIYLVHLNACAYY  246 (314)
Q Consensus       173 f~~Dlis~lP~~~~~~~-~~~~-~~~lrl~rllr~~r~~~~~~~l---~~~~-~~~~~~~l~~l~~~~l~~~H~~aC~~~  246 (314)
                      +++|+++++|++..... .+.+ .+.+|.+|++|+.|+.+..+..   .+.. ..-...++..++..+++..|+.||+++
T Consensus        73 ~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~  152 (223)
T 1orq_C           73 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIY  152 (223)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999876531 1110 1345555555555555543321   1111 111112466677777888999999998


Q ss_pred             HhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746         247 EISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ  314 (314)
Q Consensus       247 ~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG~  314 (314)
                      .+...   ++++     +...|.+|+||+++||||+|| |++|.|+.|++++++.|++|++++|+.+|+
T Consensus       153 ~~e~~---~~~~-----~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~  213 (223)
T 1orq_C          153 IVEYP---DPNS-----SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT  213 (223)
T ss_dssp             HTTSS---STTC-----SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC---CcCC-----CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76442   1222     236899999999999999995 999999999999999999999999999873
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-05
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 0.001
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 16/87 (18%)

Query: 229 RTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIG-KNPR 287
           R L  ++ ++      ++ I               +G ++    Y+   T  ++G  +  
Sbjct: 4   RILLLVLAVIIYGTAGFHFI---------------EGESWTVSLYWTFVTIATVGYGDYS 48

Query: 288 PTNEMEYVFMTVSWLLGVFVFAVLIGQ 314
           P+  +   F     +LG+  FAV + +
Sbjct: 49  PSTPLGMYFTVTLIVLGIGTFAVAVER 75
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.42
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.39
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.32
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.92
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.97
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 97.78
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 95.01
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.42  E-value=4.1e-13  Score=99.05  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHH
Q psy4746         229 RTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFV  307 (314)
Q Consensus       229 ~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~  307 (314)
                      .....++++.++.++..++..+.+.. +      +....|.+|+||+++|+||+|| |++|+|..+|+++++.++.|+.+
T Consensus         9 ~~~~~~~~~~~~~~s~~~~~~e~~~~-~------~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~   81 (103)
T d1r3jc_           9 GAATVLLVIVLLAGSYLAVLAERGAP-G------AQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITS   81 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTST-T------CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC-C------cccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHH
Confidence            33444445555555555555443221 1      1225689999999999999995 99999999999999999999999


Q ss_pred             hhhhcc
Q psy4746         308 FAVLIG  313 (314)
Q Consensus       308 ~a~iiG  313 (314)
                      +|.++|
T Consensus        82 ~~~~~~   87 (103)
T d1r3jc_          82 FGLVTA   87 (103)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure