Psyllid ID: psy4757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK
ccccccEEEEEcccEEEccHHHHHHccccccccHHHHcccccccccEEEEccccccHHHHHHHHHHccEEccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccccEEEEEEccEEEEEEHHHHcccccccccccccccccEEccccEEEEccccccHHHHHHHHHHccEcccccccHHHHHHHHHHHcccHHHEcHHHcHHHHcccHHHHHHHHHHccccccccccHHHHHHHcccHHHccccccccHHHHHHHHHHHHcccccccccc
MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANydpilneyffdrhpgVFAQILNYYrtgklhyptnvcgplfeeelefwgldsnqvepccwstysihrdTQTTLAILDkldidaekptEEEIARMFGYEDAYLEDSLNAWQRLKPKVwslfdepysslgak
mdgehriilnvggiryeTYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWslfdepysslgak
MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK
*****RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFD*********
**GEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQT******************************LEDSLNAWQRLKPKVWSLFDEPYSSL***
MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK
***EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDID**KPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPY******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
P17972 498 Potassium voltage-gated c no N/A 1.0 0.339 0.798 1e-81
G5EFC3 558 Potassium voltage-gated c no N/A 0.982 0.297 0.644 8e-64
P25122 585 Potassium voltage-gated c yes N/A 0.994 0.287 0.456 2e-43
P15388 511 Potassium voltage-gated c no N/A 0.994 0.328 0.456 2e-43
P48547 511 Potassium voltage-gated c no N/A 0.994 0.328 0.456 2e-43
Q01956 889 Potassium voltage-gated c no N/A 0.970 0.184 0.422 3e-40
Q63959 769 Potassium voltage-gated c no N/A 0.970 0.213 0.437 6e-40
Q96PR1 638 Potassium voltage-gated c no N/A 1.0 0.264 0.393 2e-39
Q03721 635 Potassium voltage-gated c no N/A 0.976 0.259 0.431 2e-38
P22462 638 Potassium voltage-gated c no N/A 1.0 0.264 0.384 2e-38
>sp|P17972|KCNAW_DROME Potassium voltage-gated channel protein Shaw OS=Drosophila melanogaster GN=Shaw PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (772), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 156/169 (92%)

Query: 1   MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
           MD E+R++LNVGGIR+ETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQ+
Sbjct: 6   MDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQV 65

Query: 61  LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDI 120
           LNYYRTGKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+LD+LD+
Sbjct: 66  LNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDL 125

Query: 121 DAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK 169
           D EKP+EEE+AR FG+E+ Y + +++ WQ +KP++WSLFDEPYSS  AK
Sbjct: 126 DTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAK 174
Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)
>sp|G5EFC3|KCNAG_CAEEL Potassium voltage-gated channel protein egl-36 OS=Caenorhabditis elegans GN=egl-36 PE=1 SV=1 Back     alignment and function description
>sp|P25122|KCNC1_RAT Potassium voltage-gated channel subfamily C member 1 OS=Rattus norvegicus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|P15388|KCNC1_MOUSE Potassium voltage-gated channel subfamily C member 1 OS=Mus musculus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|P48547|KCNC1_HUMAN Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=2 SV=1 Back     alignment and function description
>sp|Q01956|KCNC3_RAT Potassium voltage-gated channel subfamily C member 3 OS=Rattus norvegicus GN=Kcnc3 PE=2 SV=1 Back     alignment and function description
>sp|Q63959|KCNC3_MOUSE Potassium voltage-gated channel subfamily C member 3 OS=Mus musculus GN=Kcnc3 PE=2 SV=2 Back     alignment and function description
>sp|Q96PR1|KCNC2_HUMAN Potassium voltage-gated channel subfamily C member 2 OS=Homo sapiens GN=KCNC2 PE=1 SV=1 Back     alignment and function description
>sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2 Back     alignment and function description
>sp|P22462|KCNC2_RAT Potassium voltage-gated channel subfamily C member 2 OS=Rattus norvegicus GN=Kcnc2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
328707216 601 PREDICTED: potassium voltage-gated chann 1.0 0.281 0.881 4e-88
91089261 613 PREDICTED: similar to Potassium voltage- 1.0 0.275 0.875 5e-88
350422589 696 PREDICTED: potassium voltage-gated chann 0.994 0.241 0.809 2e-85
386769366 937 Shaw-like, isoform C [Drosophila melanog 1.0 0.180 0.857 3e-85
442627004 835 Shaw-like, isoform D [Drosophila melanog 1.0 0.202 0.857 5e-85
321473965 486 hypothetical protein DAPPUDRAFT_46499 [D 1.0 0.347 0.834 2e-83
321475342 508 hypothetical protein DAPPUDRAFT_44795 [D 1.0 0.332 0.846 3e-83
307211409 532 Potassium voltage-gated channel protein 1.0 0.317 0.822 1e-82
307179537 527 Potassium voltage-gated channel protein 1.0 0.320 0.816 1e-82
427789113 598 Putative potassium voltage-gated channel 1.0 0.282 0.804 7e-82
>gi|328707216|ref|XP_001951310.2| PREDICTED: potassium voltage-gated channel protein Shaw-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  328 bits (842), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 149/169 (88%), Positives = 161/169 (95%)

Query: 1   MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
           MDGE+RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDP+LNEYFFDRHPGVFAQ+
Sbjct: 1   MDGENRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFAQV 60

Query: 61  LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDI 120
           LNYYRTGKLHYPTNVCGPLFE+ELEFWGLDSNQVEPCCWSTYSIHRDTQ TLAILDKLDI
Sbjct: 61  LNYYRTGKLHYPTNVCGPLFEDELEFWGLDSNQVEPCCWSTYSIHRDTQATLAILDKLDI 120

Query: 121 DAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK 169
           D+EKP EEE+ARMFGYE+ YL  +LN WQR KPK+W+LF+EP+SSL AK
Sbjct: 121 DSEKPNEEEVARMFGYEEEYLAGTLNLWQRTKPKLWALFNEPHSSLSAK 169

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91089261|ref|XP_969930.1| PREDICTED: similar to Potassium voltage-gated channel protein Shaw (Shaw2) [Tribolium castaneum] gi|270012487|gb|EFA08935.1| hypothetical protein TcasGA2_TC006642 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|350422589|ref|XP_003493219.1| PREDICTED: potassium voltage-gated channel protein Shaw-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|386769366|ref|NP_001097131.2| Shaw-like, isoform C [Drosophila melanogaster] gi|383291406|gb|ABV53658.2| Shaw-like, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442627004|ref|NP_609284.3| Shaw-like, isoform D [Drosophila melanogaster] gi|440213604|gb|AAF52768.4| Shaw-like, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|321473965|gb|EFX84931.1| hypothetical protein DAPPUDRAFT_46499 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321475342|gb|EFX86305.1| hypothetical protein DAPPUDRAFT_44795 [Daphnia pulex] Back     alignment and taxonomy information
>gi|307211409|gb|EFN87536.1| Potassium voltage-gated channel protein Shaw [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307179537|gb|EFN67851.1| Potassium voltage-gated channel protein Shaw [Camponotus floridanus] Back     alignment and taxonomy information
>gi|427789113|gb|JAA60008.1| Putative potassium voltage-gated channel protein shaw [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
FB|FBgn0003386 498 Shaw "Shaker cognate w" [Droso 1.0 0.339 0.798 7.1e-77
FB|FBgn0085395 941 Shawl "Shaw-like" [Drosophila 0.917 0.164 0.858 6.5e-74
WB|WBGene00008819 619 shw-1 [Caenorhabditis elegans 1.0 0.273 0.751 6.7e-72
WB|WBGene00004793 479 shw-3 [Caenorhabditis elegans 1.0 0.352 0.710 9.4e-66
WB|WBGene00001202 558 egl-36 [Caenorhabditis elegans 0.982 0.297 0.650 1.9e-60
ZFIN|ZDB-GENE-070410-118 597 kcnc2 "potassium voltage-gated 0.976 0.276 0.489 4.4e-45
UNIPROTKB|F1SH17199 F1SH17 "Uncharacterized protei 0.727 0.618 0.542 6.7e-45
UNIPROTKB|F1PGG2 569 KCNC2 "Uncharacterized protein 0.727 0.216 0.542 1.7e-44
UNIPROTKB|Q96PR1 638 KCNC2 "Potassium voltage-gated 0.727 0.192 0.542 6.5e-44
UNIPROTKB|J9P810 624 KCNC2 "Uncharacterized protein 0.727 0.197 0.542 7.9e-44
FB|FBgn0003386 Shaw "Shaker cognate w" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 135/169 (79%), Positives = 156/169 (92%)

Query:     1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
             MD E+R++LNVGGIR+ETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQ+
Sbjct:     6 MDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQV 65

Query:    61 LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDI 120
             LNYYRTGKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+LD+LD+
Sbjct:    66 LNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDL 125

Query:   121 DAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK 169
             D EKP+EEE+AR FG+E+ Y + +++ WQ +KP++WSLFDEPYSS  AK
Sbjct:   126 DTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAK 174
GO:0005886 "plasma membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=NAS
GO:0005249 "voltage-gated potassium channel activity" evidence=NAS;TAS
GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS
GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;TAS
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0030431 "sleep" evidence=IMP
GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA
FB|FBgn0085395 Shawl "Shaw-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00008819 shw-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00004793 shw-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00001202 egl-36 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-118 kcnc2 "potassium voltage-gated channel, Shaw-related subfamily, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH17 F1SH17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGG2 KCNC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PR1 KCNC2 "Potassium voltage-gated channel subfamily C member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P810 KCNC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
pfam0221492 pfam02214, K_tetra, K+ channel tetramerisation dom 1e-43
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 4e-14
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain Back     alignment and domain information 
 Score =  139 bits (352), Expect = 1e-43
 Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 7  IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
          + LNVGG R+ET K+TL + P T L RL +    YD   NEYFFDR P  F  ILN+YRT
Sbjct: 1  VRLNVGGKRFETSKSTLTRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYRT 60

Query: 67 -GKLHYPTNVCGPLFEEELEFWGLDSNQVEPC 97
           GKLH P  VC   F EELEF+GL    +E C
Sbjct: 61 GGKLHRPEEVCLDSFLEELEFYGLGELAIELC 92

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
KOG3713|consensus 477 100.0
KOG4390|consensus 632 100.0
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 99.96
KOG1545|consensus 507 99.95
KOG2714|consensus 465 99.89
KOG2715|consensus210 99.87
KOG2716|consensus230 99.84
KOG1665|consensus 302 99.83
KOG2723|consensus221 99.79
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.82
KOG3840|consensus 438 98.7
PHA03098 534 kelch-like protein; Provisional 96.25
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 95.52
PHA02790 480 Kelch-like protein; Provisional 93.42
PHA02713 557 hypothetical protein; Provisional 92.82
KOG4441|consensus 571 89.29
KOG0783|consensus 1267 82.15
>KOG3713|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.6e-43  Score=300.42  Aligned_cols=154  Identities=49%  Similarity=0.899  Sum_probs=130.7

Q ss_pred             CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhc---------CCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCC
Q psy4757           4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEA---------LANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTN   74 (169)
Q Consensus         4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~---------~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~   74 (169)
                      +++|+|||||++|++.++||.++|.|+|++|..+         |++||+.++||||||||.+|.+||||||||+||+|.+
T Consensus        30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~  109 (477)
T KOG3713|consen   30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVPAD  109 (477)
T ss_pred             CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeeccccc
Confidence            4599999999999999999999999999999772         6899999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHhCCCCcCcCcccccccccccchHHHHHHhhhcccccCCCcHHHHHHhhCcchhhhccchhHHhhhHHH
Q psy4757          75 VCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPK  154 (169)
Q Consensus        75 ~~~~~~~~E~~f~~l~~~~l~~CC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  154 (169)
                      +|...|.+|++||||++.++++|||..|.+++++..+....       .+.++++..+++|.++     ..++|+++|+|
T Consensus       110 vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ee~~e~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~r~r  177 (477)
T KOG3713|consen  110 VCPLSFEEELDYWGIDEAHLESCCWMRYRQRREELLEELDR-------PDPDEEELREREGPEF-----DGGRCGRLRRR  177 (477)
T ss_pred             cchHHHHHHHHHhCCChhhhhHHhHHHHhhcHHHHhhhhcc-------cCchhhhHHhhccccc-----cCCChhhHHHH
Confidence            99999999999999999999999999999999654332211       0122333334444433     24677889999


Q ss_pred             HHccccCCCCCCCCC
Q psy4757         155 VWSLFDEPYSSLGAK  169 (169)
Q Consensus       155 iW~~~E~P~sS~~Ak  169 (169)
                      ||++||+|+||.+||
T Consensus       178 lW~~~E~P~SS~~Ak  192 (477)
T KOG3713|consen  178 LWALLENPGSSLAAK  192 (477)
T ss_pred             HHHHhcCCCcchHHH
Confidence            999999999999986

>KOG4390|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2723|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
3kvt_A115 Tetramerization Domain From Akv3.1 (shaw-subfamily) 2e-58
1nn7_A105 Crystal Structure Of The Tetramerization Domain Of 2e-19
1s1g_A124 Crystal Structure Of Kv4.3 T1 Domain Length = 124 1e-17
2nz0_B140 Crystal Structure Of Potassium Channel Kv4.3 In Com 2e-17
2i2r_A144 Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Len 3e-17
1exb_E103 Structure Of The Cytoplasmic Beta Subunit-T1 Assemb 8e-14
2r9r_B 514 Shaker Family Voltage Dependent Potassium Channel ( 1e-13
3lnm_B 514 F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan 1e-13
1t1d_A100 Crystal Structure Of The Tetramerization Domain Of 1e-13
1qdv_A99 N-Terminal Domain, Voltage-Gated Potassium Channel 1e-13
1a68_A95 Crystal Structure Of The Tetramerization Domain Of 1e-13
3lut_B 499 A Structural Model For The Full-Length Shaker Potas 2e-13
2a79_B 499 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 2e-13
1eoe_A100 Crystal Structure Of The V135r Mutant Of A Shaker T 2e-13
1eod_A100 Crystal Structure Of The N136d Mutant Of A Shaker T 4e-13
1qdw_A87 N-Terminal Domain, Voltage-Gated Potassium Channel 5e-13
1eof_A100 Crystal Structure Of The N136a Mutant Of A Shaker T 1e-12
1dsx_A87 Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Lengt 2e-12
3drx_A202 X-Ray Crystal Structure Of Human Kctd5 Protein Crys 5e-07
3drz_A107 X-Ray Crystal Structure Of The N-Terminal Btb Domai 7e-07
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily) Voltage-gated Potassium Channel Length = 115 Back     alignment and structure 
Iteration: 1

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 98/115 (85%), Positives = 109/115 (94%)
Query: 1   MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
           MD E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI
Sbjct: 1   MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 61  LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAIL 115
           +NYYR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+L
Sbjct: 61  INYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQETLAVL 115
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shal Voltage- Gated Potassium Channel Length = 105 Back     alignment and structure
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain Length = 124 Back     alignment and structure
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex With Its Regulatory Subunit Kchip1 (Casp Target) Length = 140 Back     alignment and structure
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Length = 144 Back     alignment and structure
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 103 Back     alignment and structure
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 Back     alignment and structure
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 Back     alignment and structure
>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 100 Back     alignment and structure
>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-131 Length = 99 Back     alignment and structure
>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 95 Back     alignment and structure
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 Back     alignment and structure
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 Back     alignment and structure
>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1 Domain Length = 100 Back     alignment and structure
>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1 Domain Length = 100 Back     alignment and structure
>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-119 Length = 87 Back     alignment and structure
>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1 Domain Length = 100 Back     alignment and structure
>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Length = 87 Back     alignment and structure
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202 Back     alignment and structure
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
3kvt_A115 Potassium channel protein SHAW; tetramerization do 5e-52
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 3e-48
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 3e-47
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 1e-46
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 1e-43
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 4e-36
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 1e-35
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 7e-34
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 Back     alignment and structure
 Score =  161 bits (408), Expect = 5e-52
 Identities = 98/115 (85%), Positives = 109/115 (94%)

Query: 1   MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
           MD E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI
Sbjct: 1   MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60

Query: 61  LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAIL 115
           +NYYR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+L
Sbjct: 61  INYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQETLAVL 115
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
3kvt_A115 Potassium channel protein SHAW; tetramerization do 100.0
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 100.0
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 100.0
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 100.0
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 100.0
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 100.0
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 99.97
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 99.96
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 97.86
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.64
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 97.63
2vpk_A116 Myoneurin; transcription regulation, transcription 97.57
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.56
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 97.36
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 97.3
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.29
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 97.22
3b84_A119 Zinc finger and BTB domain-containing protein 48; 97.21
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 97.15
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 97.13
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 97.06
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.05
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 96.96
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 96.94
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 96.92
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 96.83
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 96.23
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 95.63
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 89.98
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
Probab=100.00  E-value=7.5e-43  Score=253.53  Aligned_cols=112  Identities=86%  Similarity=1.492  Sum_probs=100.2

Q ss_pred             CCCCCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHH
Q psy4757           1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLF   80 (169)
Q Consensus         1 ~~~~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~   80 (169)
                      |+++++|+|||||++|+|+++||+++|+|+|++|++....+++++|+|||||||.+|++||||||+|+|++|.+++...|
T Consensus         1 m~~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~   80 (115)
T 3kvt_A            1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLF   80 (115)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHH
T ss_pred             CCCCCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHH
Confidence            89999999999999999999999999999999999876678889999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcCcCcccccccccccchHHHH
Q psy4757          81 EEELEFWGLDSNQVEPCCWSTYSIHRDTQTTL  112 (169)
Q Consensus        81 ~~E~~f~~l~~~~l~~CC~~~~~~~~~~~~~~  112 (169)
                      .+||+||+|++..++.||+..|++++++.+++
T Consensus        81 ~~Ea~fy~i~~~~l~~CC~~~~~~~~~~~~~~  112 (115)
T 3kvt_A           81 EEELEFWGLDSNQVEPCCWMTYTAHRDTQETL  112 (115)
T ss_dssp             HHHHHHHTCCGGGBCGGGSHHHHSCC------
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHhccchhhhh
Confidence            99999999999999999999999999875544
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d3kvta_103 d.42.1.2 (A:) akv3.1 voltage-gated potassium chann 4e-39
d1nn7a_105 d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus 1e-34
d1t1da_100 d.42.1.2 (A:) Shaker potassium channel {California 6e-31
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score =  126 bits (318), Expect = 4e-39
 Identities = 89/103 (86%), Positives = 99/103 (96%)

Query: 4   EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNY 63
           E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI+NY
Sbjct: 1   ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60

Query: 64  YRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHR 106
           YR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HR
Sbjct: 61  YRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHR 103
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d3kvta_103 akv3.1 voltage-gated potassium channel {California 100.0
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 100.0
d1t1da_100 Shaker potassium channel {California sea hare (Apl 100.0
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 97.5
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 97.01
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=100.00  E-value=2.9e-39  Score=228.78  Aligned_cols=103  Identities=86%  Similarity=1.539  Sum_probs=98.1

Q ss_pred             CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHH
Q psy4757           4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEE   83 (169)
Q Consensus         4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E   83 (169)
                      +++|+|||||++|+|+++||.++|+|+|+.+++....+++++++|||||||.+|++||||||+|+|++|.+++...|.+|
T Consensus         1 ~~rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~E   80 (103)
T d3kvta_           1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEE   80 (103)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCcccccccCHHHHHHH
Confidence            47999999999999999999999999999999887778889999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcCcCccccccccccc
Q psy4757          84 LEFWGLDSNQVEPCCWSTYSIHR  106 (169)
Q Consensus        84 ~~f~~l~~~~l~~CC~~~~~~~~  106 (169)
                      |+||||++.+++.|||..|++++
T Consensus        81 a~yygi~~~~l~~Cc~~~~~~~~  103 (103)
T d3kvta_          81 LEFWGLDSNQVEPCCWMTYTAHR  103 (103)
T ss_dssp             HHHHTCCGGGBCGGGSHHHHSCC
T ss_pred             HHHcCCCHHHHHHHhHHHHhhcC
Confidence            99999999999999999998764
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure