Psyllid ID: psy4774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKQTDKLGAK
Secondary Structure (PSIPRED)
ccccccccccccccccEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccccccccccccEEEcccccEEEEEccccccccccEEEEEEccccEEEEEcccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEcccccEEEEEcHccEEEEcccccEEEEEEcccccccccccEEccccEEccccEEEEEcccccccHHHHHHHHHcccccEEEEEcccccEEEEEHHHHHccc
Coil and Loop (DISEMBL)
mfdgfkyeqqcgrplgmkfdkngalhvADAYFGLYKVNVTTGQTEQLISMdteidgakpqipnsvtvdsdgmvywsdsstkyklydglfdgltsgsgsfikigpnTQEVLQKQTDKLGAK
Flexible Loop (DISEMBL)
mfdgfkyeQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDteidgakpqipnsvtvdsdGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKqtdklgak
Low Complexity Region (SEG)
MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKQTDKLGAK
Disordered region (IsUnstruct)
*********QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEI********NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKI******************
Disordered Region (DISOPRED)
**DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKQTDKLG**
Disordered Region (DISEMBL)
MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQ*********
Disordered Region (DISPRO)
MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKQTDKLG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEVLQKQTDKLGAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q5ZIF1	415	Adipocyte plasma membrane	yes	N/A	0.683	0.197	0.493	9e-16
Q803F5	415	Adipocyte plasma membrane	yes	N/A	0.675	0.195	0.426	2e-13
B5X3B2	416	Adipocyte plasma membrane	N/A	N/A	0.85	0.245	0.384	1e-12
Q3T0E5	412	Adipocyte plasma membrane	yes	N/A	0.841	0.245	0.4	7e-12
Q9HDC9	416	Adipocyte plasma membrane	yes	N/A	0.683	0.197	0.433	1e-11
Q7TP48	376	Adipocyte plasma membrane	yes	N/A	0.683	0.218	0.421	2e-11
Q9D7N9	415	Adipocyte plasma membrane	yes	N/A	0.683	0.197	0.433	2e-11
P94111	335	Strictosidine synthase 1	no	N/A	0.808	0.289	0.310	0.0001

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   N  L VADAY+GLY+VN  TG+T+ L+S  T I+G K    N +TV
Sbjct: 145 EPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTV 204

Query: 68  DSDG-MVYWSDSSTKYKLYDGLF 89
             DG  +Y++DSS+K++  D LF
Sbjct: 205 TQDGRKIYFTDSSSKWQRRDFLF 227

Gallus gallus (taxid: 9031)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 6   KYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSV 65
           ++E  CGRPLG++   NG L VADAY GL++VN  TG+ + L+S +  I G +    N +
Sbjct: 143 EHEHTCGRPLGIRVGPNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDL 202

Query: 66  TVDSDG-MVYWSDSSTKYKLYD 86
            V  DG  VY++DSS++++  D
Sbjct: 203 DVTQDGKKVYFTDSSSRWQRRD 224

Danio rerio (taxid: 7955)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   NG L VADAY GL+KVN  TG+   L+S    + G +    N + V
Sbjct: 146 EPSCGRPLGIRVGPNGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDV 205

Query: 68  DSDG-MVYWSDSSTKYKLYDGLFDGL-TSGSGSFIKIGPNTQEV 109
             DG  VY++DSS++++  D L   +  +  G  ++    T+EV
Sbjct: 206 TQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEV 249

Salmo salar (taxid: 8030)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   NG L V DAY GL++VN    + + L+S +T I+G K    N +TV
Sbjct: 145 EPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTV 204

Query: 68  DSDG-MVYWSDSSTKYKLYDGLFDGLTSGS--GSFIKIGPNTQEV 109
             DG  +Y++DSS+K++  D L   L  G+  G  ++    T+EV
Sbjct: 205 TRDGRKIYFTDSSSKWQRRDYLLL-LMEGTDDGRLLEYDTQTKEV 248

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   NG L VADAY GL++VN    + + L+S +T I+G      N +TV
Sbjct: 146 EPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTV 205

Query: 68  DSDG-MVYWSDSSTKYKLYDGLF 89
             DG  +Y++DSS+K++  D L 
Sbjct: 206 TQDGRKIYFTDSSSKWQRRDYLL 228

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   NG L V DAY GL++VN      + L+S +T I+G K    N +T+
Sbjct: 106 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 165

Query: 68  DSDG-MVYWSDSSTKYKLYDGLF 89
             DG  +Y++DSS+K++  D L 
Sbjct: 166 TRDGRKIYFTDSSSKWQRRDYLL 188

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 8   EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
           E  CGRPLG++   NG L V DAY GL++VN      + L+S +T I+G K    N +TV
Sbjct: 145 EPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTV 204

Query: 68  DSDG-MVYWSDSSTKYKLYDGLF 89
             DG  +Y++DSS+K++  D L 
Sbjct: 205 TRDGRKIYFTDSSSKWQRRDYLL 227

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 10  QCGRPLGMKF-DKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
           +CGRP G+ F +K G L+VADA  GL+ ++   G   ++      +DG   +  + + VD
Sbjct: 95  RCGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITD---SVDGKPFKFLDGLDVD 151

Query: 69  -SDGMVYWSDSSTKYKLYDGLFD-GLTSGSGSFIKIGPNTQEV 109
            + G+VY++  S+++     L   GL   +G   K  P+T+ V
Sbjct: 152 PTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVV 194

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
328714072	412	PREDICTED: LOW QUALITY PROTEIN: adipocyt	0.883	0.257	0.504	1e-25
270011245	486	hypothetical protein TcasGA2_TC030782, p	0.875	0.216	0.514	2e-25
91087333	503	PREDICTED: similar to hemomucin [Triboli	0.875	0.208	0.514	2e-25
215541377	423	putative hemomucin [Schistocerca gregari	0.891	0.252	0.541	1e-24
156551049	544	PREDICTED: adipocyte plasma membrane-ass	0.883	0.194	0.5	8e-24
383859542	572	PREDICTED: adipocyte plasma membrane-ass	0.916	0.192	0.464	2e-21
307210789	587	Adipocyte plasma membrane-associated pro	0.825	0.168	0.454	5e-21
332027099	578	Adipocyte plasma membrane-associated pro	0.883	0.183	0.424	7e-21
380024889	592	PREDICTED: adipocyte plasma membrane-ass	0.916	0.185	0.437	1e-20
328784314	590	PREDICTED: LOW QUALITY PROTEIN: adipocyt	0.916	0.186	0.437	2e-20

>gi|328714072|ref|XP_001947674.2| PREDICTED: LOW QUALITY PROTEIN: adipocyte plasma membrane-associated protein-like [Acyrthosiphon pisum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTT---GQTEQLISMDTEIDGAKP 59
           DG   E  CGRPLG+  DK G L+VADAY+G++KVN+     G+ EQL+S+D  IDG  P
Sbjct: 109 DGLYDEHICGRPLGLSMDKTGFLYVADAYYGIFKVNLNPDQYGKKEQLVSLDDVIDGVHP 168

Query: 60  QIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQE 108
           ++PNSV + SDG +YW+DS T YKL+DGL+     G+G  +K  P T+ 
Sbjct: 169 KLPNSVAIASDGTLYWTDSDTNYKLHDGLYTLFVDGTGRLLKYDPKTKR 217

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011245|gb|EFA07693.1| hypothetical protein TcasGA2_TC030782, partial [Tribolium castaneum]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 75/105 (71%)

Query: 4   GFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
           G   E+ CGRPLGM FDKNG L VAD+Y+G++KV+V TG+ E+L++ D +IDG    +PN
Sbjct: 111 GIYEERICGRPLGMAFDKNGVLFVADSYYGVFKVDVKTGKKERLVAFDEQIDGRNVTLPN 170

Query: 64  SVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQE 108
           SV V S+G ++W+DSST++ L DG+FD L  GSG  I     T++
Sbjct: 171 SVAVASNGDIFWTDSSTEFDLQDGVFDLLADGSGRLIHYDSKTKK 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087333|ref|XP_975599.1| PREDICTED: similar to hemomucin [Tribolium castaneum]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 75/105 (71%)

Query: 4   GFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
           G   E+ CGRPLGM FDKNG L VAD+Y+G++KV+V TG+ E+L++ D +IDG    +PN
Sbjct: 111 GIYEERICGRPLGMAFDKNGVLFVADSYYGVFKVDVKTGKKERLVAFDEQIDGRNVTLPN 170

Query: 64  SVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQE 108
           SV V S+G ++W+DSST++ L DG+FD L  GSG  I     T++
Sbjct: 171 SVAVASNGDIFWTDSSTEFDLQDGVFDLLADGSGRLIHYDSKTKK 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215541377|emb|CAT00690.1| putative hemomucin [Schistocerca gregaria]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 73/109 (66%), Gaps = 2/109 (1%)

Query: 4   GFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
           G+  E  CGRPLG+KFDK+G L+VAD Y+GL+KVNV TG   +L+S D  I+G KP + N
Sbjct: 106 GYWEESICGRPLGLKFDKHGNLYVADTYYGLFKVNVETGLVTKLVSADIPINGKKPLLIN 165

Query: 64  SVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGP--NTQEVL 110
           SV V  DG VYWS SS+   L DG++  L  GSG  +K  P  NT EVL
Sbjct: 166 SVDVARDGTVYWSHSSSDVTLQDGVYTLLGDGSGRLLKYSPTTNTSEVL 214

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551049|ref|XP_001605615.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Nasonia vitripennis]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E +CGRPLG+KFDK G L V DAY+G++KVNV TG+ E+L+S +  IDG  P I 
Sbjct: 106 DGLWQESKCGRPLGLKFDKKGVLFVNDAYYGIFKVNVKTGKYEKLVSKEEPIDGKVPMIV 165

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQE 108
           NS+ + S+G +YWSDSST++ L DG +  L++ SG  I+    T++
Sbjct: 166 NSLDIASNGDIYWSDSSTEFSLEDGSYTTLSNPSGRLIRYNAATKK 211

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859542|ref|XP_003705253.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Megachile rotundata]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 2/112 (1%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E++CGRPLG+KF+  G L VADAY+G++KVNV T Q   +++    IDG  P+I 
Sbjct: 106 DGLWQEEKCGRPLGLKFNDKGELFVADAYYGIFKVNVKTRQYANIVNSSLPIDGKAPRIV 165

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ--EVLQK 112
           NS+ +  +G +YW+DSST + + DGL+  L + SG FI+    T+  EVL K
Sbjct: 166 NSLDIAKNGDIYWTDSSTDFGIQDGLYTFLANPSGRFIRYNAATKKNEVLIK 217

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210789|gb|EFN87172.1| Adipocyte plasma membrane-associated protein [Harpegnathos saltator]

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E  CGRPLG KFDK G L+V D Y+GL+KV+++T + + L+++   IDG KP +P
Sbjct: 106 DGIWQEHICGRPLGFKFDKKGNLYVMDCYYGLFKVDISTKEYKNLVNITKSIDGKKPMLP 165

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIK 101
           NS+ V  +G +YW+DS+T + LY+G    L + SG  ++
Sbjct: 166 NSIDVAENGDLYWTDSNTDFPLYEGFHISLANPSGRLLR 204

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027099|gb|EGI67195.1| Adipocyte plasma membrane-associated protein [Acromyrmex echinatior]

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/106 (42%), Positives = 72/106 (67%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E +CGRPLG+KFDK G L+VADAY+G+++VNV TG+ + ++++   IDG  P++P
Sbjct: 106 DGIWQEHKCGRPLGLKFDKKGNLYVADAYYGIFQVNVATGEYKNIVNITKPIDGKIPRMP 165

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQE 108
           NS+ +  +G +YWSDS++ + + D +   L + SG  I+     +E
Sbjct: 166 NSIDIAKNGDIYWSDSNSHFAICDLVMTFLINPSGRLIRYNAAKKE 211

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024889|ref|XP_003696221.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Apis florea]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 2/112 (1%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E++CGRPLG+KF+  G L V DAY+G++KVN+ T +   +++    IDG  P+I 
Sbjct: 103 DGLWQEEKCGRPLGLKFNDKGELFVNDAYYGIFKVNINTREYINIVNSSEPIDGKIPKIV 162

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ--EVLQK 112
           NS+ +  +G +YW+DSST + LYDG++  L + SG  I+    T+  EVL K
Sbjct: 163 NSLDIAKNGDIYWTDSSTDFYLYDGMYSILANPSGRLIRYNAATKKNEVLLK 214

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784314|ref|XP_003250432.1| PREDICTED: LOW QUALITY PROTEIN: adipocyte plasma membrane-associated protein [Apis mellifera]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 2/112 (1%)

Query: 3   DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP 62
           DG   E++CGRPLG+KF+  G L V DAY+G++KVN+ T +   +++    IDG  P+I 
Sbjct: 103 DGLWQEEKCGRPLGLKFNDKGELFVNDAYYGIFKVNINTREYINIVNSSEPIDGKIPKII 162

Query: 63  NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ--EVLQK 112
           NS+ +  +G +YW+DSST + LYDG++  L + SG  I+    T+  EVL K
Sbjct: 163 NSLDIAKNGDIYWTDSSTDFYLYDGMYSILANPSGRLIRYNAATKKNEVLLK 214

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
UNIPROTKB|G1K318	414	C3H20orf3 "Uncharacterized pro	0.85	0.246	0.427	5.7e-16
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.85	0.245	0.432	7.4e-16
FB|FBgn0015737	582	Hmu "Hemomucin" [Drosophila me	0.858	0.176	0.409	5.3e-14
ZFIN|ZDB-GENE-020919-1	415	apmap "adipocyte plasma membra	0.866	0.250	0.367	1.9e-13
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.866	0.266	0.387	3.5e-13
UNIPROTKB|F1SAS3	400	LOC100157249 "Uncharacterized	0.85	0.255	0.394	6.2e-13
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.841	0.245	0.4	8.6e-13
MGI|MGI:1919131	415	Apmap "adipocyte plasma membra	0.85	0.245	0.384	1.9e-12
RGD|1308874	376	Apmap "adipocyte plasma membra	0.85	0.271	0.375	1.9e-12
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.85	0.264	0.375	2e-12

UNIPROTKB|G1K318 C3H20orf3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   N  L VADAY+GLY+VN  TG+T+ L+S  T I+G K    N +TV
Sbjct:   145 EPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTV 204

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D LF  +       ++    T+EV
Sbjct:   205 TQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGLLEYDTVTKEV 247

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   N  L VADAY+GLY+VN  TG+T+ L+S  T I+G K    N +TV
Sbjct:   145 EPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTV 204

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D LF  +  +  G  ++    T+EV
Sbjct:   205 TQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEV 248

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

FB|FBgn0015737 Hmu "Hemomucin" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 45/110 (40%), Positives = 65/110 (59%)

Query:     8 EQQCGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGA---KP-QIP 62
             E +CGRPLG+ FD  G  L +ADAY+GL++V++ T +   L+S   E+ G    +P +I 
Sbjct:   113 ESRCGRPLGLAFDTQGNNLIIADAYYGLWQVDLGTNKKTLLVSPAQELAGKSINRPAKIF 172

Query:    63 NSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIG--PNTQEVL 110
             N VTV  +G VYW+DSS+ + + D +F    + SG   K     N  EVL
Sbjct:   173 NGVTVSKEGDVYWTDSSSDFTIEDLVFASFANPSGRLFKYNRSKNVSEVL 222

GO:0009986 "cell surface" evidence=IDA

GO:0003729 "mRNA binding" evidence=NAS

GO:0004872 "receptor activity" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=NAS

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-020919-1 apmap "adipocyte plasma membrane associated protein" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 39/106 (36%), Positives = 63/106 (59%)

Query:     6 KYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSV 65
             ++E  CGRPLG++   NG L VADAY GL++VN  TG+ + L+S +  I G +    N +
Sbjct:   143 EHEHTCGRPLGIRVGPNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDL 202

Query:    66 TVDSDGM-VYWSDSSTKYKLYDGLFDGL-TSGSGSFIKIGPNTQEV 109
              V  DG  VY++DSS++++  D +   +  +  G  ++    T+EV
Sbjct:   203 DVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEV 248

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 43/111 (38%), Positives = 63/111 (56%)

Query:     1 MFDGFKYEQQCGRPLGMKFDK-NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKP 59
             + D  K E  CGRPLG++FDK NG L++ADAY G+ KV    G      S+  E DG   
Sbjct:   119 LLDYLKDEDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLAT---SVTNEADGVPL 175

Query:    60 QIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSG--SGSFIKIGPNTQE 108
             +  N + +D +G VY++DSS+ ++    +   + SG  SG  +K  P T+E
Sbjct:   176 RFTNDLDIDDEGNVYFTDSSSFFQRRKFMLL-IVSGEDSGRVLKYNPKTKE 225

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|F1SAS3 LOC100157249 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 41/104 (39%), Positives = 62/104 (59%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   NG L VADAY GL++VN    + + L+S +T I+G K    N +TV
Sbjct:   145 EPACGRPLGIRAGPNGTLLVADAYKGLFEVNPWKREVKLLLSSETPIEGRKLSFVNDLTV 204

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D L   +  +  G  ++    T+EV
Sbjct:   205 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTETKEV 248

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 176 (67.0 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   NG L V DAY GL++VN    + + L+S +T I+G K    N +TV
Sbjct:   145 EPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTV 204

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLTSGS--GSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D L   L  G+  G  ++    T+EV
Sbjct:   205 TRDGRKIYFTDSSSKWQRRDYLLL-LMEGTDDGRLLEYDTQTKEV 248

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 40/104 (38%), Positives = 60/104 (57%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   NG L V DAY GL++VN      + L+S +T I+G K    N +TV
Sbjct:   145 EPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTV 204

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGL-TSGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D L   +  +  G  ++    T+EV
Sbjct:   205 TRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEV 248

GO:0004064 "arylesterase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 39/104 (37%), Positives = 60/104 (57%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   NG L V DAY GL++VN      + L+S +T I+G K    N +T+
Sbjct:   106 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 165

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D L   +  +  G  ++    T+EV
Sbjct:   166 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEV 209

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 39/104 (37%), Positives = 60/104 (57%)

Query:     8 EQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
             E  CGRPLG++   NG L V DAY GL++VN      + L+S +T I+G K    N +T+
Sbjct:   116 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 175

Query:    68 DSDGM-VYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
               DG  +Y++DSS+K++  D L   +  +  G  ++    T+EV
Sbjct:   176 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEV 219

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	7e-04
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	7e-04

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 63  NSVTVDSD-GMVYWSDSSTKYKLYDGLFDGLTS-GSGSFIKIGPNTQEV 109
           N++ VD + G++Y++DSS++Y     +F  L    +G  +K  P+T+  
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVT 49

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 12  GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 71
           G   G   D  G L   +   G+  ++  TG    L++     DG     PN   VD DG
Sbjct: 67  GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE--DGLPLNRPNDGVVDPDG 122

Query: 72  MVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQEV 109
            +++ D       Y  L       +GS  ++ P+   V
Sbjct: 123 RIWFGDMG-----YFDLGKSEERPTGSLYRVDPDGGVV 155

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG1520|consensus	376		99.95
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.19
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.81
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.79
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.65
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.57
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.42
KOG4659|consensus	1899		98.25
KOG4659|consensus	1899		98.25
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.99
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.81
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.74
KOG4499|consensus	310		97.69
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.63
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.6
KOG1520|consensus	376		97.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.34
COG3391	381	Uncharacterized conserved protein [Function unknow	97.2
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.0
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.93
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.78
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.77
COG3211	616	PhoX Predicted phosphatase [General function predi	96.77
COG3391	381	Uncharacterized conserved protein [Function unknow	96.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.71
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.55
PRK11028	330	6-phosphogluconolactonase; Provisional	96.51
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.48
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.39
PRK11028	330	6-phosphogluconolactonase; Provisional	96.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.16
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.1
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.04
KOG4499|consensus	310		95.95
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.82
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	95.57
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.54
COG3211	616	PhoX Predicted phosphatase [General function predi	95.47
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.21
KOG1214|consensus	1289		95.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.12
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.69
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.18
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	94.17
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	94.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.96
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	93.58
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	93.52
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.16
KOG1214|consensus	1289		93.05
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	92.92
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	92.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.61
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.33
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	91.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	91.08
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.78
PRK04792	448	tolB translocation protein TolB; Provisional	89.14
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	89.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	89.09
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	88.7
TIGR03803	34	Gloeo_Verruco Gloeo_Verruco repeat. This model des	88.7
KOG1446|consensus	311		88.66
PRK02888	635	nitrous-oxide reductase; Validated	88.6
PRK01029	428	tolB translocation protein TolB; Provisional	88.59
PRK04792	448	tolB translocation protein TolB; Provisional	88.38
PRK04922	433	tolB translocation protein TolB; Provisional	87.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	87.56
smart00284	255	OLF Olfactomedin-like domains.	87.46
PRK05137	435	tolB translocation protein TolB; Provisional	87.11
COG4946	668	Uncharacterized protein related to the periplasmic	86.97
PRK04043	419	tolB translocation protein TolB; Provisional	86.96
KOG0266|consensus	456		86.85
PRK03629	429	tolB translocation protein TolB; Provisional	86.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	86.36
PRK05137	435	tolB translocation protein TolB; Provisional	86.32
KOG3567|consensus	501		85.9
PF07494	24	Reg_prop: Two component regulator propeller; Inter	85.57
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	85.43
PRK02889	427	tolB translocation protein TolB; Provisional	85.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	85.28
PRK00178	430	tolB translocation protein TolB; Provisional	85.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	84.88
PRK04922	433	tolB translocation protein TolB; Provisional	84.81
PRK01742	429	tolB translocation protein TolB; Provisional	84.67
KOG0272|consensus	459		84.48
PRK12690	238	flgF flagellar basal body rod protein FlgF; Review	84.41
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.99
PRK00178	430	tolB translocation protein TolB; Provisional	83.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	83.6
PRK03629	429	tolB translocation protein TolB; Provisional	83.6
PRK04043	419	tolB translocation protein TolB; Provisional	83.59
KOG0319|consensus	775		83.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.19
PRK12689	253	flgF flagellar basal body rod protein FlgF; Review	83.03
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.0
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.9
PRK02888	635	nitrous-oxide reductase; Validated	82.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	82.71
PRK12636	263	flgG flagellar basal body rod protein FlgG; Provis	81.78
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.36
KOG4649|consensus	354		81.05
smart00284	255	OLF Olfactomedin-like domains.	80.76
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.59

>KOG1520|consensus

Probab=99.95  E-value=6.7e-28  Score=187.50  Aligned_cols=109  Identities=41%  Similarity=0.706  Sum_probs=102.1

Q ss_pred             CcccccCCCCccceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCc
Q psy4774           4 GFKYEQQCGRPLGMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY   82 (120)
Q Consensus         4 ~~~~~~~~g~P~Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~   82 (120)
                      ..++++.||||+||+|+.+| +|||||++.|+++|++++|+.+.+++   +.+|+|+.+.|+++|+++|.||||||+.+|
T Consensus       107 ~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~---~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~  183 (376)
T KOG1520|consen  107 SFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD---EAEGKPFKFLNDLDIDPEGVVYFTDSSSKY  183 (376)
T ss_pred             ceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc---cccCeeeeecCceeEcCCCeEEEecccccc
Confidence            78889999999999999998 99999999999999999888777775   789999999999999999999999999999


Q ss_pred             ccccceecce-ecCCceEEEEcCCC--ceEecCccc
Q psy4774          83 KLYDGLFDGL-TSGSGSFIKIGPNT--QEVLQKQTD  115 (120)
Q Consensus        83 ~~~~~~~~~~-~~~~G~l~~~d~~~--~~~l~~~L~  115 (120)
                      ++++++.+++ ..++|||++|||.+  +++|+++|.
T Consensus       184 ~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~  219 (376)
T KOG1520|consen  184 DRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLY  219 (376)
T ss_pred             chhheEEeeecCCCccceEEecCcccchhhhhhccc
Confidence            9999999887 68999999999999  889999985

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.52  E-value=6.9e-15  Score=94.70  Aligned_cols=53  Identities=36%  Similarity=0.597  Sum_probs=40.4

Q ss_pred             CceEEcCC-CCEEEEeCCCCcccccceecce-ecCCceEEEEcCCC--ceEecCccc
Q psy4774          63 NSVTVDSD-GMVYWSDSSTKYKLYDGLFDGL-TSGSGSFIKIGPNT--QEVLQKQTD  115 (120)
Q Consensus        63 ndl~v~~~-G~iy~TDs~~~~~~~~~~~~~~-~~~~G~l~~~d~~~--~~~l~~~L~  115 (120)
                      |||+|+++ |.|||||++.+|+++++.++++ ..++|||++|||.+  +++|+++|.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~   57 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY   57 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC
Confidence            79999998 9999999999999999998877 79999999999999  899999986

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.36  E-value=3.5e-12  Score=94.19  Aligned_cols=92  Identities=35%  Similarity=0.457  Sum_probs=69.1

Q ss_pred             CCccceEEC-CCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCC-CCcCCCceEEcCCCCEEEEeCCCCccccccee
Q psy4774          12 GRPLGMKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGA-KPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLF   89 (120)
Q Consensus        12 g~P~Gl~~d-~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~-~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~~   89 (120)
                      ..|.|++++ ++|+||||+. .++..+|++++++++++.   ...+. +++.|||++++++|+|||||+.....      
T Consensus        40 ~~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~---~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~------  109 (246)
T PF08450_consen   40 PGPNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD---LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA------  109 (246)
T ss_dssp             SSEEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE---EETTCSCTEEEEEEEE-TTS-EEEEEECCBCT------
T ss_pred             CCCceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee---ccCCCcccCCCceEEEcCCCCEEEEecCCCcc------
Confidence            339999999 7899999986 556777999999999986   23344 89999999999999999999974311      


Q ss_pred             cceecCCceEEEEcCCC-ceEecCccc
Q psy4774          90 DGLTSGSGSFIKIGPNT-QEVLQKQTD  115 (120)
Q Consensus        90 ~~~~~~~G~l~~~d~~~-~~~l~~~L~  115 (120)
                        .....|+||++++++ ++++.+++.
T Consensus       110 --~~~~~g~v~~~~~~~~~~~~~~~~~  134 (246)
T PF08450_consen  110 --SGIDPGSVYRIDPDGKVTVVADGLG  134 (246)
T ss_dssp             --TCGGSEEEEEEETTSEEEEEEEEES
T ss_pred             --ccccccceEEECCCCeEEEEecCcc
Confidence              011128899998887 777776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.5e-10  Score=88.22  Aligned_cols=95  Identities=24%  Similarity=0.364  Sum_probs=71.7

Q ss_pred             cCCCCccceEECCCCcEEEEECCCCEEEEECCCCcE-EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccc
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDG   87 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~-~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~   87 (120)
                      .....++++.++.+|.|++|+.  |+.+++++++.. +.++.   ..++.+.+.|||+.++++|++||+|+.. +.    
T Consensus        64 ~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~---~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~----  133 (307)
T COG3386          64 SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE---PEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD----  133 (307)
T ss_pred             CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc---ccCCCCcCCCCceeEcCCCCEEEeCCCc-cc----
Confidence            3356689999999999999985  555565555555 77775   5678899999999999999999999984 11    


Q ss_pred             eecceecCCceEEEEcCCC-ceEecCc
Q psy4774          88 LFDGLTSGSGSFIKIGPNT-QEVLQKQ  113 (120)
Q Consensus        88 ~~~~~~~~~G~l~~~d~~~-~~~l~~~  113 (120)
                      ......++.|+|||++|.+ ++.++.+
T Consensus       134 ~~~~~~~~~G~lyr~~p~g~~~~l~~~  160 (307)
T COG3386         134 LGKSEERPTGSLYRVDPDGGVVRLLDD  160 (307)
T ss_pred             cCccccCCcceEEEEcCCCCEEEeecC
Confidence            1112257899999999977 5555544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.92  E-value=5.8e-09  Score=76.95  Aligned_cols=75  Identities=31%  Similarity=0.654  Sum_probs=54.8

Q ss_pred             CCCccceEECCCCc-EEEEECCCC-EEEEECC--CCcE---EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcc
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG-LYKVNVT--TGQT---EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK   83 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~--~g~~---~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~   83 (120)
                      ...|+||+++++|+ |||+|...+ |++++.+  ++++   ++++..    .+ ....|.++++|++|+||+++..    
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~----~~-~~g~pDG~~vD~~G~l~va~~~----  203 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF----PG-GPGYPDGLAVDSDGNLWVADWG----  203 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----SS-SSCEEEEEEEBTTS-EEEEEET----
T ss_pred             cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc----CC-CCcCCCcceEcCCCCEEEEEcC----
Confidence            57899999999995 899998754 9998864  3322   344431    22 2246899999999999999885    


Q ss_pred             cccceecceecCCceEEEEcCCC
Q psy4774          84 LYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        84 ~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                                  .|+|++++|++
T Consensus       204 ------------~~~I~~~~p~G  214 (246)
T PF08450_consen  204 ------------GGRIVVFDPDG  214 (246)
T ss_dssp             ------------TTEEEEEETTS
T ss_pred             ------------CCEEEEECCCc
Confidence                        46888888877

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.88  E-value=1.7e-08  Score=88.61  Aligned_cols=72  Identities=24%  Similarity=0.400  Sum_probs=58.0

Q ss_pred             CCCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccc--cC----CCCCcCCCceEEcCCCCEEEEeCCCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTE--ID----GAKPQIPNSVTVDSDGMVYWSDSSTK   81 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~--~~----g~~~~~pndl~v~~~G~iy~TDs~~~   81 (120)
                      ....|.|++++++|+|||+|..++ |.++|++++.+..++..+..  .+    ...|+.|++|+++++|+|||+|+.+.
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            456899999999999999999865 88899988888888753210  01    12678999999999999999999753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=2.3e-08  Score=87.88  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             CcccccCCCCccceEECCCC-cEEEEECCCC-EEEEECCCCcEEEEeccccc---cCC------CCCcCCCceEEcC-CC
Q psy4774           4 GFKYEQQCGRPLGMKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTE---IDG------AKPQIPNSVTVDS-DG   71 (120)
Q Consensus         4 ~~~~~~~~g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~---~~g------~~~~~pndl~v~~-~G   71 (120)
                      |..++....+|.||+++++| .|||||..++ |.++|..++.+++++..+..   ..|      ..|+.|.+|++++ +|
T Consensus       616 G~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g  695 (1057)
T PLN02919        616 GSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE  695 (1057)
T ss_pred             CchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC
Confidence            33445567889999999986 4899998755 88899988888888753211   111      2488999999999 68


Q ss_pred             CEEEEeCCC
Q psy4774          72 MVYWSDSST   80 (120)
Q Consensus        72 ~iy~TDs~~   80 (120)
                      .|||||+..
T Consensus       696 ~LyVad~~~  704 (1057)
T PLN02919        696 KVYIAMAGQ  704 (1057)
T ss_pred             eEEEEECCC
Confidence            999999864

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.81  E-value=6.5e-08  Score=75.94  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             CCCCccceEECCCCcEEEEECCCCEEEEE-CC-----CCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCc-
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFGLYKVN-VT-----TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-   82 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd-~~-----~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~-   82 (120)
                      ....|.||++.++| |||++.. .|+++. .+     +++.++++.........+.+.+|++++++||.|||++..... 
T Consensus        70 ~l~~p~Gi~~~~~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~  147 (367)
T TIGR02604        70 ELSMVTGLAVAVGG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS  147 (367)
T ss_pred             CCCCccceeEecCC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence            35789999999998 9998654 488883 32     126667765211100114677999999999999999996321 


Q ss_pred             -ccccceecc-eecCCceEEEEcCCC--ceEecCccc
Q psy4774          83 -KLYDGLFDG-LTSGSGSFIKIGPNT--QEVLQKQTD  115 (120)
Q Consensus        83 -~~~~~~~~~-~~~~~G~l~~~d~~~--~~~l~~~L~  115 (120)
                       ......... .....|+++|++|++  +++++.++.
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r  184 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ  184 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeEEEEecCcC
Confidence             100111111 123568999999998  888888864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.79  E-value=5.2e-08  Score=74.43  Aligned_cols=71  Identities=11%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             CCCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCccc
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKL   84 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~   84 (120)
                      .+.+|.||.+++||..||||..++|.|+|+|+.+++.+--..    ...-...|-.+||+.|+||||.+...|++
T Consensus       102 ~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~----~~a~~nlet~vfD~~G~lWFt~q~G~yGr  172 (353)
T COG4257         102 SGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL----EHADANLETAVFDPWGNLWFTGQIGAYGR  172 (353)
T ss_pred             CCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc----ccCCCcccceeeCCCccEEEeecccccee
Confidence            357899999999999999999999999999999988884211    11122357899999999999999876665

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.70  E-value=1e-07  Score=61.41  Aligned_cols=57  Identities=23%  Similarity=0.389  Sum_probs=44.4

Q ss_pred             cceEECCC-CcEEEEECCC-----------------C-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EE
Q psy4774          15 LGMKFDKN-GALHVADAYF-----------------G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY   74 (120)
Q Consensus        15 ~Gl~~d~~-G~l~V~d~~~-----------------g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy   74 (120)
                      ++++++++ |.+|++|+..                 | ++++||.+++.++++.        .+.+||||++++|+. |.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--------~L~fpNGVals~d~~~vl   72 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--------GLYFPNGVALSPDESFVL   72 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------EESSEEEEEE-TTSSEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------CCCccCeEEEcCCCCEEE
Confidence            47899999 9999999631                 3 9999999999999974        377999999999986 99


Q ss_pred             EEeCC
Q psy4774          75 WSDSS   79 (120)
Q Consensus        75 ~TDs~   79 (120)
                      |+++.
T Consensus        73 v~Et~   77 (89)
T PF03088_consen   73 VAETG   77 (89)
T ss_dssp             EEEGG
T ss_pred             EEecc
Confidence            99996

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.9e-07  Score=72.26  Aligned_cols=66  Identities=27%  Similarity=0.455  Sum_probs=53.4

Q ss_pred             cccCCCCccceEECCCCcEEEEECC-----C------C-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CE
Q psy4774           7 YEQQCGRPLGMKFDKNGALHVADAY-----F------G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MV   73 (120)
Q Consensus         7 ~~~~~g~P~Gl~~d~~G~l~V~d~~-----~------g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~i   73 (120)
                      ......|||-..++++|++|+.++.     .      | |++++|. |.++.++.       ..+..||+|+++||| .+
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~-------~~~~~~NGla~SpDg~tl  177 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLD-------DDLTIPNGLAFSPDGKTL  177 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeec-------CcEEecCceEECCCCCEE
Confidence            3455689999999999999999876     2      3 9999994 66666642       137789999999999 89


Q ss_pred             EEEeCCC
Q psy4774          74 YWSDSST   80 (120)
Q Consensus        74 y~TDs~~   80 (120)
                      |++|+..
T Consensus       178 y~aDT~~  184 (307)
T COG3386         178 YVADTPA  184 (307)
T ss_pred             EEEeCCC
Confidence            9999964

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.57  E-value=3.2e-07  Score=70.17  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             ccccCCCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774           6 KYEQQCGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus         6 ~~~~~~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      +..++++.|+||...++|++|++..+ +-|.+||+.++..+++...    ++ .-+.-..++.|+.|.+|+|+...
T Consensus       183 fpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P----~~-~~~gsRriwsdpig~~wittwg~  253 (353)
T COG4257         183 FPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP----NA-LKAGSRRIWSDPIGRAWITTWGT  253 (353)
T ss_pred             eccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC----Cc-ccccccccccCccCcEEEeccCC
Confidence            34678899999999999999999765 5699999999977777421    11 12334579999999999998864

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.42  E-value=1e-06  Score=69.19  Aligned_cols=61  Identities=25%  Similarity=0.325  Sum_probs=50.9

Q ss_pred             CCCccceEECCCCcEEEEECC--------------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY--------------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD   70 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~--------------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~   70 (120)
                      .+.|+++++++||.||+++..                    .+|+|++|++++.++++.      |  +..|++++++++
T Consensus       123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~------G--~rnp~Gl~~d~~  194 (367)
T TIGR02604       123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH------G--FQNPYGHSVDSW  194 (367)
T ss_pred             cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec------C--cCCCccceECCC
Confidence            355999999999999998651                    139999998888887752      3  678999999999


Q ss_pred             CCEEEEeCC
Q psy4774          71 GMVYWSDSS   79 (120)
Q Consensus        71 G~iy~TDs~   79 (120)
                      |++|+||..
T Consensus       195 G~l~~tdn~  203 (367)
T TIGR02604       195 GDVFFCDND  203 (367)
T ss_pred             CCEEEEccC
Confidence            999999985

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659|consensus

Probab=98.25  E-value=5.8e-06  Score=73.24  Aligned_cols=72  Identities=19%  Similarity=0.385  Sum_probs=47.8

Q ss_pred             CCCcccccCCCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774           2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus         2 ~~~~~~~~~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      |+|..+-...=.|-.+|..+||+|||-|... |.||.+ +|+++.++....    ..-..--=+|++| +|.||++|+.
T Consensus       355 C~G~a~~~~L~aPvala~a~DGSl~VGDfNy-IRRI~~-dg~v~tIl~L~~----t~~sh~Yy~AvsPvdgtlyvSdp~  427 (1899)
T KOG4659|consen  355 CEGKADSISLFAPVALAYAPDGSLIVGDFNY-IRRISQ-DGQVSTILTLGL----TDTSHSYYIAVSPVDGTLYVSDPL  427 (1899)
T ss_pred             CCCccccceeeceeeEEEcCCCcEEEccchh-eeeecC-CCceEEEEEecC----CCccceeEEEecCcCceEEecCCC
Confidence            8899888888889999999999999988633 777776 477766664310    0111112455565 5666666654

>KOG4659|consensus

Probab=98.25  E-value=5.3e-06  Score=73.48  Aligned_cols=74  Identities=27%  Similarity=0.368  Sum_probs=58.5

Q ss_pred             CcccccCCCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEecccc------------ccCCCCCcCCCceEEcC-C
Q psy4774           4 GFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDT------------EIDGAKPQIPNSVTVDS-D   70 (120)
Q Consensus         4 ~~~~~~~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~------------~~~g~~~~~pndl~v~~-~   70 (120)
                      +...+.+...|.||++|+.|.||.+|..+ |.+||. +|-++++.+...            +....++.||-+|+|+| +
T Consensus       467 alA~dA~L~~PkGIa~dk~g~lYfaD~t~-IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmd  544 (1899)
T KOG4659|consen  467 ALAQDAQLIFPKGIAFDKMGNLYFADGTR-IRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMD  544 (1899)
T ss_pred             hhcccceeccCCceeEccCCcEEEecccE-EEEecc-CceEEEeccCCCCccCccccccccchhheeeecccceeecCCC
Confidence            45556777899999999999999999744 888886 688888765311            12223678999999999 8


Q ss_pred             CCEEEEeCC
Q psy4774          71 GMVYWSDSS   79 (120)
Q Consensus        71 G~iy~TDs~   79 (120)
                      +.||+-|..
T Consensus       545 nsl~Vld~n  553 (1899)
T KOG4659|consen  545 NSLLVLDTN  553 (1899)
T ss_pred             CeEEEeecc
Confidence            999999986

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.99  E-value=8.6e-06  Score=41.32  Aligned_cols=22  Identities=45%  Similarity=0.697  Sum_probs=19.6

Q ss_pred             CcCCCceEEcCCCCEEEEeCCC
Q psy4774          59 PQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        59 ~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      |..|++|+++++|+||++|+.+
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n   22 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGN   22 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCC
T ss_pred             CcCCcEEEEeCCCCEEEEECCC
Confidence            5689999999999999999863

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.81  E-value=8.4e-05  Score=56.96  Aligned_cols=63  Identities=24%  Similarity=0.301  Sum_probs=48.6

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCC----CcEEEEeccccccCCCCCcCCCceEEcC--CCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTT----GQTEQLISMDTEIDGAKPQIPNSVTVDS--DGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~----g~~~~~~~~~~~~~g~~~~~pndl~v~~--~G~iy~TDs~   79 (120)
                      +...|+++|++|+||.++.. +.|.+.++++    .+.++++.     +.+.+.+|+++.+++  +|.||++-+.
T Consensus       186 ~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-----d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  186 SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-----DPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             -SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE------CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE-----cCceeeccceeeeccccCceEEEEECc
Confidence            46689999999999999987 5699999864    26777763     455699999999999  9999998876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.74  E-value=5e-05  Score=38.45  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             CCccceEECCCCcEEEEECCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG   33 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g   33 (120)
                      ..|.||+++++|+|||||..++
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~   23 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNH   23 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCT
T ss_pred             cCCcEEEEeCCCCEEEEECCCC
Confidence            4799999999999999998765

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4499|consensus

Probab=97.69  E-value=0.00029  Score=53.19  Aligned_cols=79  Identities=20%  Similarity=0.431  Sum_probs=56.7

Q ss_pred             CCCccceEECCCC-cEEEEECCC-CE--EEEECCCCcE---EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcc
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYF-GL--YKVNVTTGQT---EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK   83 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~-gi--~~vd~~~g~~---~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~   83 (120)
                      .+-|+||++|.+- .+|+.|.-+ -|  +.+|..+|.+   .++...- +.....-..|++++||.+|+||++-..    
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlr-k~~~~e~~~PDGm~ID~eG~L~Va~~n----  231 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLR-KSQPFESLEPDGMTIDTEGNLYVATFN----  231 (310)
T ss_pred             ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEec-cCCCcCCCCCCcceEccCCcEEEEEec----
Confidence            4679999999887 678888763 36  5566777764   2443321 111122347999999999999999886    


Q ss_pred             cccceecceecCCceEEEEcCCC
Q psy4774          84 LYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        84 ~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                                  .|+|+++||.+
T Consensus       232 ------------g~~V~~~dp~t  242 (310)
T KOG4499|consen  232 ------------GGTVQKVDPTT  242 (310)
T ss_pred             ------------CcEEEEECCCC
Confidence                        47899999887

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.63  E-value=0.00018  Score=54.29  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=39.5

Q ss_pred             CCccceEECCC-CcEEEEECC-CCEEEEECCCCcEEEEeccccccCC--CCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          12 GRPLGMKFDKN-GALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDG--AKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~-G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g--~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ..|.|+++++. |+|||-... .-|+.+|. +|++...........|  ..+.+|-||++|++|+||++.-.+
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            45899999998 689987554 56999997 5775444433222223  467889999999999999887654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.60  E-value=0.00056  Score=52.41  Aligned_cols=66  Identities=24%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             ccceEECCCCcEEEEECCC-------------CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC------CCEE
Q psy4774          14 PLGMKFDKNGALHVADAYF-------------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD------GMVY   74 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~-------------gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~------G~iy   74 (120)
                      ..++.+|+.|+|||.|.+.             .|+.+|.+++++.......... -.+-.+.|+++||..      +.+|
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~-~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI-APPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC-S-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH-cccccccceEEEEccCCCCcceEEE
Confidence            3689999999999999752             2999999988864333321111 114567899999983      4799


Q ss_pred             EEeCCC
Q psy4774          75 WSDSST   80 (120)
Q Consensus        75 ~TDs~~   80 (120)
                      +||++.
T Consensus        82 ItD~~~   87 (287)
T PF03022_consen   82 ITDSGG   87 (287)
T ss_dssp             EEETTT
T ss_pred             EeCCCc
Confidence            999984

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520|consensus

Probab=97.47  E-value=0.00021  Score=56.67  Aligned_cols=60  Identities=22%  Similarity=0.372  Sum_probs=45.6

Q ss_pred             CCccceEECCCCcEEEEECCC-----------------C-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-
Q psy4774          12 GRPLGMKFDKNGALHVADAYF-----------------G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-   72 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~-----------------g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-   72 (120)
                      -..+++.++++|.+|..|+..                 | ++++|+.+...+++.+        .+.+||+++.++|+. 
T Consensus       161 kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld--------~L~F~NGlaLS~d~sf  232 (376)
T KOG1520|consen  161 KFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD--------GLYFPNGLALSPDGSF  232 (376)
T ss_pred             eecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh--------cccccccccCCCCCCE
Confidence            346799999999999998531                 2 7778876665556652        588999999999975 


Q ss_pred             EEEEeCC
Q psy4774          73 VYWSDSS   79 (120)
Q Consensus        73 iy~TDs~   79 (120)
                      +.|++..
T Consensus       233 vl~~Et~  239 (376)
T KOG1520|consen  233 VLVAETT  239 (376)
T ss_pred             EEEEeec
Confidence            6677775

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.34  E-value=0.0011  Score=51.57  Aligned_cols=63  Identities=17%  Similarity=0.397  Sum_probs=44.9

Q ss_pred             CccceEECCCC-cEEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774          13 RPLGMKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus        13 ~P~Gl~~d~~G-~l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      .|.+|++.++| .|||++....   ++.+|.++|+++.+...  ...|   ..|.+++++++|+ ||+++...
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~--~~~G---~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV--PTGG---KFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE--EESS---SSEEEEEE-TTSSEEEEEETTT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE--eCCC---CCccEEEEeCCCCEEEEEecCC
Confidence            68899999999 5788886644   66666678888876432  2222   3589999999985 88888763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0046  Score=48.95  Aligned_cols=62  Identities=31%  Similarity=0.439  Sum_probs=47.3

Q ss_pred             CCCCccceEECCCC-cEEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      .+..|.+++++++| .+||++..   .-+..+|..++++.....     .|.   .|-+++++++|+ +|++|+.
T Consensus       114 vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-----vG~---~P~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         114 VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-----VGN---TPTGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-----cCC---CcceEEECCCCCeEEEEecC
Confidence            34489999999998 99999984   338999988776544421     232   458999999997 9999954

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0059  Score=49.03  Aligned_cols=75  Identities=21%  Similarity=0.369  Sum_probs=52.6

Q ss_pred             CCccceEECCC-------CcEEEEECC-CCEEEEECCCCcEEEEec-cccccCCCCCcCCCceEEcCCCCEEEEeCCCCc
Q psy4774          12 GRPLGMKFDKN-------GALHVADAY-FGLYKVNVTTGQTEQLIS-MDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY   82 (120)
Q Consensus        12 g~P~Gl~~d~~-------G~l~V~d~~-~gi~~vd~~~g~~~~~~~-~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~   82 (120)
                      --|+||+|=..       |.++|+... ..+++++++ |..+++.. +... +..  .-|-||++.+||.||+||..   
T Consensus       314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~-g~~~~~~~~fl~~-d~~--gR~~dV~v~~DGallv~~D~---  386 (399)
T COG2133         314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPD-GNYKVVLTGFLSG-DLG--GRPRDVAVAPDGALLVLTDQ---  386 (399)
T ss_pred             cccceeEEecCCcCccccCcEEEEeecceeEEEeccC-CCcceEEEEEEec-CCC--CcccceEECCCCeEEEeecC---
Confidence            44799999853       689998765 458888886 44333322 1111 111  45789999999999999996   


Q ss_pred             ccccceecceecCCceEEEEcCC
Q psy4774          83 KLYDGLFDGLTSGSGSFIKIGPN  105 (120)
Q Consensus        83 ~~~~~~~~~~~~~~G~l~~~d~~  105 (120)
                                  .+|+|||+.+.
T Consensus       387 ------------~~g~i~Rv~~~  397 (399)
T COG2133         387 ------------GDGRILRVSYA  397 (399)
T ss_pred             ------------CCCeEEEecCC
Confidence                        36899999764

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.93  E-value=0.006  Score=50.56  Aligned_cols=70  Identities=17%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             CCCCccceEECCC-CcEEEEECC-C-------------------CEEEEECCCC-------cEEEEecccc---------
Q psy4774          10 QCGRPLGMKFDKN-GALHVADAY-F-------------------GLYKVNVTTG-------QTEQLISMDT---------   52 (120)
Q Consensus        10 ~~g~P~Gl~~d~~-G~l~V~d~~-~-------------------gi~~vd~~~g-------~~~~~~~~~~---------   52 (120)
                      ...||.||++++. |.+|++-.. .                   +|++++++.+       +++.++..+.         
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            4689999999997 699998421 1                   3999998755       5555543211         


Q ss_pred             -ccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          53 -EIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        53 -~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                       ......|..|+.|+|+++|+|||..=.
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCC
Confidence             012347999999999999999975443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.78  E-value=0.021  Score=45.22  Aligned_cols=66  Identities=14%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             cCCCCccceEECCCC-cEEEEEC---------CC-CEEEEECCCCcEEEEeccccccCCC----CCcCCCceEEcCCC-C
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADA---------YF-GLYKVNVTTGQTEQLISMDTEIDGA----KPQIPNSVTVDSDG-M   72 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~---------~~-gi~~vd~~~g~~~~~~~~~~~~~g~----~~~~pndl~v~~~G-~   72 (120)
                      +.+.+|.|+ +.+|| .||||..         .. -|..+|.++++..-=.    .....    -...|+.+++++|| .
T Consensus        44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i----~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI----ELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE----ccCCCchhhccCccceEEECCCCCE
Confidence            567799997 99998 7899987         32 2778898877643222    12222    24678899999999 5


Q ss_pred             EEEEeCC
Q psy4774          73 VYWSDSS   79 (120)
Q Consensus        73 iy~TDs~   79 (120)
                      +||++-.
T Consensus       119 l~V~n~~  125 (352)
T TIGR02658       119 LLFYQFS  125 (352)
T ss_pred             EEEecCC
Confidence            9988744

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.77  E-value=0.0085  Score=46.58  Aligned_cols=73  Identities=16%  Similarity=0.348  Sum_probs=47.6

Q ss_pred             ccCCCCccceEECCCC-cEEEEECCCC---EEEEECCCCcEEEEeccccccCCC-CCcCCCceEEcCCCC-EEEEeCCC
Q psy4774           8 EQQCGRPLGMKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGA-KPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus         8 ~~~~g~P~Gl~~d~~G-~l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~-~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      .+.+..|..|+|+++| .+||+....+   ++.++.++|+.+.+.....-..+. .-+.|.+|++++||+ ||+++...
T Consensus       188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~  266 (345)
T PF10282_consen  188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS  266 (345)
T ss_dssp             CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred             cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence            3557789999999998 6788876643   555564577766554321111121 234789999999995 89999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.77  E-value=0.0085  Score=49.96  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CCCCccceEECCC-CcEEEEECC-----------------CCEEEEECCCC-------cEEEEeccccccC---------
Q psy4774          10 QCGRPLGMKFDKN-GALHVADAY-----------------FGLYKVNVTTG-------QTEQLISMDTEID---------   55 (120)
Q Consensus        10 ~~g~P~Gl~~d~~-G~l~V~d~~-----------------~gi~~vd~~~g-------~~~~~~~~~~~~~---------   55 (120)
                      .--||.+|++.+. |++|++...                 .+|+|+-+.++       +++.++..+....         
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~  494 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI  494 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence            3468999999997 589997421                 13999988776       6777765322111         


Q ss_pred             -CCCCcCCCceEEcCCCCEEEE-eCC
Q psy4774          56 -GAKPQIPNSVTVDSDGMVYWS-DSS   79 (120)
Q Consensus        56 -g~~~~~pndl~v~~~G~iy~T-Ds~   79 (120)
                       ..-|+.|++|+||+.|+||+. |.+
T Consensus       495 ~~~~f~~PDnl~fD~~GrLWi~TDg~  520 (616)
T COG3211         495 NANWFNSPDNLAFDPWGRLWIQTDGS  520 (616)
T ss_pred             ccccccCCCceEECCCCCEEEEecCC
Confidence             123888999999999999964 443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.024  Score=44.88  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             cCCCCccceEECCCCc-EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      ..+..|.|++++++|. +||++...+ |..++..+.++.. ...  ...-..+..|.+++++++|. +|+++...
T Consensus       157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~--~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV--GSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc--ccccccCCCCceEEECCCCCEEEEEeccC
Confidence            3444689999999996 999996644 8888875443332 210  00112567899999999996 99999875

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.71  E-value=0.0058  Score=47.54  Aligned_cols=63  Identities=27%  Similarity=0.395  Sum_probs=39.3

Q ss_pred             CCccceEECC-------CCcEEEEECCC-CEEEEECCCC-cEEEEeccccccCCCCCc-CCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDK-------NGALHVADAYF-GLYKVNVTTG-QTEQLISMDTEIDGAKPQ-IPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~-------~G~l~V~d~~~-gi~~vd~~~g-~~~~~~~~~~~~~g~~~~-~pndl~v~~~G~iy~TDs~   79 (120)
                      .-|.|+.|-+       +|.++|++... .|+++..+++ ++.....    .-+ .+. .|-+|++++||.|||+|..
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~~r~~~v~~~pDG~Lyv~~d~  325 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE----FLG-GFGGRPRDVAQGPDGALYVSDDS  325 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE----ECT-TSSS-EEEEEEETTSEEEEEE-T
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE----ccc-cCCCCceEEEEcCCCeEEEEECC
Confidence            4578888763       56799999864 4888876533 3221111    111 222 4679999999999999984

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.69  E-value=0.0076  Score=47.10  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEE-EEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY-WSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy-~TDs~   79 (120)
                      ...|.+.++. +|+||++|.+.| |.++|+++|+.++++.    .+|    +|.+|++.  |++. ++=|.
T Consensus       202 LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~----vpG----~~rGL~f~--G~llvVgmSk  261 (335)
T TIGR03032       202 LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAF----LPG----FTRGLAFA--GDFAFVGLSK  261 (335)
T ss_pred             ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEE----CCC----CCccccee--CCEEEEEecc
Confidence            3567777886 789999999976 9999998899999984    455    67899999  7655 44444

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.035  Score=43.72  Aligned_cols=61  Identities=13%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CccceEECCCCc-EEEEECCC---CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          13 RPLGMKFDKNGA-LHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        13 ~P~Gl~~d~~G~-l~V~d~~~---gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      ....|++.++|+ ||+|+-+.   .+++||+.+|+++.+...  .   ..-.+|.++.+++.|++.+.-.
T Consensus       245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~---teg~~PR~F~i~~~g~~Liaa~  309 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--P---TEGQFPRDFNINPSGRFLIAAN  309 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--c---cCCcCCccceeCCCCCEEEEEc
Confidence            345699999995 57777553   288899988887766432  2   2335689999999987554433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.55  E-value=0.008  Score=46.78  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcE-EEEeccccccCCCCCcCCCceEEcCC----CCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSD----GMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~-~~~~~~~~~~~g~~~~~pndl~v~~~----G~iy~TDs   78 (120)
                      .+|-+|++.|+|+|||++....|+.++. +|.. ..+.... ++.........+|+++++    +.||++-+
T Consensus         2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t   71 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYT   71 (331)
T ss_dssp             SSEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred             CCceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEE
Confidence            4799999999999999988444888884 5665 4444321 222333445679999995    88998776

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.51  E-value=0.033  Score=42.52  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             cCCCCccceEECCCC-cEEEEECCCC-E--EEEECCCCcEEEEeccccccC-CCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADAYFG-L--YKVNVTTGQTEQLISMDTEID-GAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~~~g-i--~~vd~~~g~~~~~~~~~~~~~-g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      +.+..|.+++++++| .+||++...+ |  +.++..+++.+.+.....-.. .....++.+++++|+|. +|+++..
T Consensus       172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~  248 (330)
T PRK11028        172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT  248 (330)
T ss_pred             CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence            346679999999998 5688876533 4  445543566554432110001 01123567899999985 8888764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.48  E-value=0.016  Score=47.40  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             CCCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-------CCEEEEe
Q psy4774          10 QCGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-------GMVYWSD   77 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-------G~iy~TD   77 (120)
                      -...|-+|++.++|+|||++-. ..|++++++++..+.+..............+.+|+++|+       +.||++=
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            3578999999999999999874 459999876666555543211111112445679999865       4799884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.39  E-value=0.0093  Score=31.73  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             CCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          58 KPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        58 ~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      .+..||++++|+. +.||+||+..
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~   30 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGL   30 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCC
Confidence            5678999999996 6899999973

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.39  E-value=0.044  Score=43.42  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=42.6

Q ss_pred             CCccc---eEECCCC-cEEEEEC----------CCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC--EEE
Q psy4774          12 GRPLG---MKFDKNG-ALHVADA----------YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM--VYW   75 (120)
Q Consensus        12 g~P~G---l~~d~~G-~l~V~d~----------~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~--iy~   75 (120)
                      =+|.|   ++++++| +|||+..          .+.|+.+|.+++++...+.     -|.   .|.+|++++||.  ||+
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----vG~---~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----LGH---EIDSINVSQDAKPLLYA  316 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----CCC---ceeeEEECCCCCeEEEE
Confidence            46777   9999886 8899531          1359999998887654432     132   478999999975  677


Q ss_pred             EeCC
Q psy4774          76 SDSS   79 (120)
Q Consensus        76 TDs~   79 (120)
                      |+..
T Consensus       317 tn~~  320 (352)
T TIGR02658       317 LSTG  320 (352)
T ss_pred             eCCC
Confidence            7753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.35  E-value=0.071  Score=40.66  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             CccceEECCCCc-EEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          13 RPLGMKFDKNGA-LHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~-l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      .|.+|+++++|+ |||++...+   ++.++.+++..+.+...   ..+   ..|.++.++++| .||++...
T Consensus       229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~---~~~---~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ---PTE---TQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE---ecc---ccCCceEECCCCCEEEEEEcc
Confidence            456799999995 788865433   55556554444444321   112   468999999998 68888763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.12  Score=40.81  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=49.3

Q ss_pred             cCCCCccceEECCCCcE-EEEECCCC---EEEEECCCCcEEEEeccccccCC-CCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774           9 QQCGRPLGMKFDKNGAL-HVADAYFG---LYKVNVTTGQTEQLISMDTEIDG-AKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l-~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g-~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      ..+..|.-|+|.|+|++ |+...-.+   ++.+++..|+.+.+-...+-.++ ...++..+|.+++||+ ||+++-..
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence            45677999999999977 66544333   77788877887766432111111 1245677999999996 89998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.10  E-value=0.13  Score=37.39  Aligned_cols=60  Identities=22%  Similarity=0.433  Sum_probs=39.9

Q ss_pred             CCCccceEECCCCc-EEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...|.+++++++|+ +|++.... .|..+|.++++......     .+   ..+..++++++|+ +|++.+
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----~~---~~~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-----SG---PDPELFALHPNGKILYIANE   92 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----CC---CCccEEEECCCCCEEEEEcC
Confidence            35588999999996 56776554 47788987776543221     11   1246788999886 667654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.025  Score=42.19  Aligned_cols=58  Identities=12%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             CCcEEEE-ECCCCEEEEECCCCcEEEEecccc-----ccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          22 NGALHVA-DAYFGLYKVNVTTGQTEQLISMDT-----EIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        22 ~G~l~V~-d~~~gi~~vd~~~g~~~~~~~~~~-----~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      +|.||.- -....|.||+|++|++..+.+...     ..++...+-+|+||.++++ ++|+|--.
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence            5666642 223569999999999877765311     2233456789999999974 89999765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.04  E-value=0.051  Score=42.17  Aligned_cols=67  Identities=22%  Similarity=0.413  Sum_probs=44.4

Q ss_pred             cceEECCC-CcEEEE-ECCCCEEEEECCCCcEEEEeccccccCCC--CCcCCCceEEcCCCCEEEEeCCCCc
Q psy4774          15 LGMKFDKN-GALHVA-DAYFGLYKVNVTTGQTEQLISMDTEIDGA--KPQIPNSVTVDSDGMVYWSDSSTKY   82 (120)
Q Consensus        15 ~Gl~~d~~-G~l~V~-d~~~gi~~vd~~~g~~~~~~~~~~~~~g~--~~~~pndl~v~~~G~iy~TDs~~~~   82 (120)
                      .|+.+++. ++|+|- +..+-++.+|.+ |.+.-.........|-  ....+-||+.|++|+||++--.+.|
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlf  306 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLF  306 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcc
Confidence            48899976 588875 555669999985 6643332221122232  4567899999999999977665443

>KOG4499|consensus

Probab=95.95  E-value=0.074  Score=40.45  Aligned_cols=81  Identities=25%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC--CCEEEEeCCCCcccccce
Q psy4774          12 GRPLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD--GMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~--G~iy~TDs~~~~~~~~~~   88 (120)
                      -.|-|+++|.+|+|||+-... .|+++||.+|++-.-..    .   |-......+|...  ..+|+|-..- |...  .
T Consensus       212 ~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik----l---Pt~qitsccFgGkn~d~~yvT~aa~-~~dp--~  281 (310)
T KOG4499|consen  212 LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK----L---PTPQITSCCFGGKNLDILYVTTAAK-FDDP--V  281 (310)
T ss_pred             CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE----c---CCCceEEEEecCCCccEEEEEehhc-ccCc--h
Confidence            458999999999999986553 49999999998522221    1   2223456677754  5677777642 2211  0


Q ss_pred             ecceecC-CceEEEEc
Q psy4774          89 FDGLTSG-SGSFIKIG  103 (120)
Q Consensus        89 ~~~~~~~-~G~l~~~d  103 (120)
                      + ...+| .|.+|++.
T Consensus       282 ~-~~~~p~aG~iykit  296 (310)
T KOG4499|consen  282 R-TNTDPNAGTIYKIT  296 (310)
T ss_pred             h-cccCCCCccEEEec
Confidence            1 11234 67777774

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.82  E-value=0.05  Score=34.70  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCCC
Q psy4774          34 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSST   80 (120)
Q Consensus        34 i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~~   80 (120)
                      |+-+|++  ++.++++        .+.+||||++++++ .||++++..
T Consensus        38 Vvyyd~~--~~~~va~--------g~~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen   38 VVYYDGK--EVKVVAS--------GFSFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             EEEEeCC--EeEEeec--------cCCCCceEEEcCCCCEEEEEeccC
Confidence            6667763  4555552        47899999999985 799999974

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=95.57  E-value=0.0093  Score=32.21  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=18.0

Q ss_pred             cCCCceEEcCCCCEEEEeCCC
Q psy4774          60 QIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        60 ~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ..+++|++|++|+||++-.+.
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeec
Confidence            368999999999999987763

SBBP stands for Seven Bladed Beta Propeller.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.54  E-value=0.25  Score=40.43  Aligned_cols=93  Identities=9%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCCccceEECCC-------CcEEEEEC----------CCCEEEEECCC--C---cEEEEeccccccCCCCCcCCCceEEc
Q psy4774          11 CGRPLGMKFDKN-------GALHVADA----------YFGLYKVNVTT--G---QTEQLISMDTEIDGAKPQIPNSVTVD   68 (120)
Q Consensus        11 ~g~P~Gl~~d~~-------G~l~V~d~----------~~gi~~vd~~~--g---~~~~~~~~~~~~~g~~~~~pndl~v~   68 (120)
                      .+.++||+++|+       +.|||+-.          ...|.|+..+.  .   ..++++.   .......+.-..|+|+
T Consensus        78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~---~lP~~~~H~GgrI~Fg  154 (454)
T TIGR03606        78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLA---GLPAGNDHNGGRLVFG  154 (454)
T ss_pred             CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEe---cCCCCCCcCCceEEEC
Confidence            467899999876       36899831          23487775431  1   1233432   2222335667799999


Q ss_pred             CCCCEEEEeCCCCcc------ccccee----------cceecCCceEEEEcCCC
Q psy4774          69 SDGMVYWSDSSTKYK------LYDGLF----------DGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        69 ~~G~iy~TDs~~~~~------~~~~~~----------~~~~~~~G~l~~~d~~~  106 (120)
                      +||.||||--.....      ......          .......|.|+|+|+++
T Consensus       155 PDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DG  208 (454)
T TIGR03606       155 PDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDG  208 (454)
T ss_pred             CCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCC
Confidence            999999987654210      000000          01234679999999887

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.47  E-value=0.052  Score=45.45  Aligned_cols=63  Identities=19%  Similarity=0.311  Sum_probs=40.8

Q ss_pred             CCCCccceEECCCCcEEEE-ECCC--------CEEEE---ECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEE
Q psy4774          10 QCGRPLGMKFDKNGALHVA-DAYF--------GLYKV---NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWS   76 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~-d~~~--------gi~~v---d~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~T   76 (120)
                      ..+.|-+|+||+.|+|||| |...        |+..+   ++++|++..+..   ...|-.+   -+.+++||| ++|+.
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t---~P~g~E~---tG~~FspD~~TlFV~  571 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLT---GPIGCEF---TGPCFSPDGKTLFVN  571 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeecc---CCCccee---ecceeCCCCceEEEE
Confidence            3677999999999999998 4321        45555   444555555542   2223333   489999998 56655


Q ss_pred             eC
Q psy4774          77 DS   78 (120)
Q Consensus        77 Ds   78 (120)
                      -.
T Consensus       572 vQ  573 (616)
T COG3211         572 VQ  573 (616)
T ss_pred             ec
Confidence            44

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.21  E-value=0.51  Score=34.26  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=40.5

Q ss_pred             CCccceEECCCCcE-EEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          12 GRPLGMKFDKNGAL-HVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l-~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ..|.+++++++|+. |++... ..|..+|.+++++.....     .+   ..+..++++++|. ||.+..
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~---~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-----VG---QRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-----eC---CCcceEEECCCCCEEEEEcC
Confidence            35789999999965 666543 458888988777654431     12   2467999999985 566654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1214|consensus

Probab=95.13  E-value=0.13  Score=45.04  Aligned_cols=61  Identities=20%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             CCCccceEECCCC-cEEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~   80 (120)
                      .+.|.|||+|.-+ ++|-+|+...   +-++|  +.+..+++.     .  -|..|..|++|+ .|+||+||-..
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld--G~~rkvLf~-----t--dLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLD--GSERKVLFY-----T--DLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred             CCCccceeeeeccceeeeeccccchhheeecC--CceeeEEEe-----e--cccCcceEEeecccCceeeccccc
Confidence            4779999999887 8999998643   44454  334555653     2  366789999999 68999999864

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.12  E-value=0.16  Score=38.80  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=38.9

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +..=||+.|. ..||++|....|+.+||++-+...-...  ..+|.|....|-|..- +|.||.---.
T Consensus       130 ~EGWGLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V--~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  130 GEGWGLTSDG-KRLIMSDGSSRLYFLDPETFKEVRTIQV--TDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             SS--EEEECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE---EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             CcceEEEcCC-CEEEEECCccceEEECCcccceEEEEEE--EECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            4556888774 4899999988899999986544322221  2357788888998887 5878766554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.69  E-value=0.14  Score=27.92  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             CcEEEEECCC--CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC
Q psy4774          23 GALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS   69 (120)
Q Consensus        23 G~l~V~d~~~--gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~   69 (120)
                      ++||-+|...  .|.+.+.++...++++.       ..+..|++|+||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~-------~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVIS-------DDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEE-------SSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEE-------CCCCCcCEEEECC
Confidence            4789999874  47778887666677764       1378899999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.34  E-value=0.54  Score=36.45  Aligned_cols=66  Identities=14%  Similarity=0.284  Sum_probs=41.8

Q ss_pred             CccceEECCCCcEEEEECCC-------CEEEEECCCCcE-EEEecccccc-------CCCC-CcCCCceEEcCCCC-EEE
Q psy4774          13 RPLGMKFDKNGALHVADAYF-------GLYKVNVTTGQT-EQLISMDTEI-------DGAK-PQIPNSVTVDSDGM-VYW   75 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~-------gi~~vd~~~g~~-~~~~~~~~~~-------~g~~-~~~pndl~v~~~G~-iy~   75 (120)
                      -|.||++.++|.+||++.+.       .|++++++ |++ +.+.-. ...       .+.+ =...-+|++.++|. ||+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP-~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVP-AAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccc-cccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            35599998899999998765       49999986 665 333100 011       1111 12234899999998 776


Q ss_pred             EeCCC
Q psy4774          76 SDSST   80 (120)
Q Consensus        76 TDs~~   80 (120)
                      .--+.
T Consensus       164 ~~E~~  168 (326)
T PF13449_consen  164 AMESP  168 (326)
T ss_pred             EECcc
Confidence            55543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.18  E-value=0.24  Score=39.21  Aligned_cols=57  Identities=30%  Similarity=0.459  Sum_probs=36.5

Q ss_pred             ccceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          14 PLGMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      +.++++.+|| .+||+.....|..||+.++++.--+    . .|   ..|.++++++||. +|+++.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----~-~G---~~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----K-VG---GNPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----E--S---SEEEEEEE--TTTEEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----e-cC---CCcceEEEcCCCCEEEEEec
Confidence            4678899999 5899875445999999887743222    1 12   2468999999996 777765

...

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=94.17  E-value=0.16  Score=26.70  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             CCCCccceEECCCC-cEEEEECCCC-EEEEECC
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAYFG-LYKVNVT   40 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~   40 (120)
                      ....|+||++|+.+ .||-+|...+ |.+.+.+
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            45789999999996 7899998755 7777764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=94.07  E-value=0.052  Score=29.21  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=17.0

Q ss_pred             CCccceEECCCCcEEEEECC
Q psy4774          12 GRPLGMKFDKNGALHVADAY   31 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~   31 (120)
                      -.|.+|++|++|++||+-..
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            36899999999999998543

SBBP stands for Seven Bladed Beta Propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.96  E-value=0.41  Score=36.11  Aligned_cols=67  Identities=19%  Similarity=0.116  Sum_probs=37.1

Q ss_pred             ccceEECCC-CcEEEEECC--CCEEEEEC--CCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          14 PLGMKFDKN-GALHVADAY--FGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        14 P~Gl~~d~~-G~l~V~d~~--~gi~~vd~--~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      --||++|+. ++|||+...  .+|+.++.  ......+.....-......+.-|.++++++. |++|+....+
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence            359999998 588888543  46888875  2233333332100112334556899999985 8999876654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=93.58  E-value=0.43  Score=39.71  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=18.9

Q ss_pred             ccCCCCccceEECCCCcEEEEE
Q psy4774           8 EQQCGRPLGMKFDKNGALHVAD   29 (120)
Q Consensus         8 ~~~~g~P~Gl~~d~~G~l~V~d   29 (120)
                      ......|-+|+|+++|+||||.
T Consensus       432 ~~~f~sPDNL~~d~~G~LwI~e  453 (524)
T PF05787_consen  432 DNGFASPDNLAFDPDGNLWIQE  453 (524)
T ss_pred             CCCcCCCCceEECCCCCEEEEe
Confidence            4556789999999999999993

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=93.52  E-value=0.25  Score=39.87  Aligned_cols=60  Identities=13%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             CccceEECCCCcEEEEECCC-------------C-EEEEEC--------CCCcEEEEeccccccCCCCCcCCCceEEcCC
Q psy4774          13 RPLGMKFDKNGALHVADAYF-------------G-LYKVNV--------TTGQTEQLISMDTEIDGAKPQIPNSVTVDSD   70 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~-------------g-i~~vd~--------~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~   70 (120)
                      .-.-|+|++||+|||+-...             | |++++.        .....++++        .-+..|.+++++|.
T Consensus       178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s--------~G~RN~qGl~w~P~  249 (399)
T COG2133         178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWS--------YGHRNPQGLAWHPV  249 (399)
T ss_pred             CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEE--------eccCCccceeecCC
Confidence            33459999999999973221             2 445443        222222332        12445779999997


Q ss_pred             -CCEEEEeCCC
Q psy4774          71 -GMVYWSDSST   80 (120)
Q Consensus        71 -G~iy~TDs~~   80 (120)
                       |.||++|-..
T Consensus       250 tg~Lw~~e~g~  260 (399)
T COG2133         250 TGALWTTEHGP  260 (399)
T ss_pred             CCcEEEEecCC
Confidence             9999999976

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.16  E-value=1.9  Score=33.32  Aligned_cols=88  Identities=15%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             CccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccc--c--ccCCCCCcCCCceEEc----CCCCEEEEeCCCCcc
Q psy4774          13 RPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMD--T--EIDGAKPQIPNSVTVD----SDGMVYWSDSSTKYK   83 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~--~--~~~g~~~~~pndl~v~----~~G~iy~TDs~~~~~   83 (120)
                      +.+.+..+++|+++|+--. .-|++|++++|++.=.....  +  +..+..|.+-+|..+-    ++++|-+=|..+.- 
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~-  223 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSD-  223 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCC-
Confidence            3568899999999987544 55999999899864333210  0  0012237777888887    67777777773210 


Q ss_pred             cccceecceecCCceEEEEcCCC
Q psy4774          84 LYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        84 ~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                         .  .......|+++.+|+.+
T Consensus       224 ---~--~~~~~s~~~v~~ld~~~  241 (299)
T PF14269_consen  224 ---F--NGTEPSRGLVLELDPET  241 (299)
T ss_pred             ---C--CCCcCCCceEEEEECCC
Confidence               0  11145678999999888

>KOG1214|consensus

Probab=93.05  E-value=0.17  Score=44.42  Aligned_cols=62  Identities=19%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             CCccceEECCCC-cEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCCC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~~   80 (120)
                      .-|-||.||=.. .+|-+|.. .-|-+-..++++.+.+++       +.|..|.+|+||--+ ++|+|||..
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n-------~~L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN-------SGLISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeec-------ccCCCccceeeeeccceeeeecccc
Confidence            457799999776 55668876 448888887788888874       358899999999865 899999974

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=92.92  E-value=1.5  Score=33.01  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=47.7

Q ss_pred             CCccceEECCC-CcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCc-CCCceEEcCC-CCEEEEeCCCCcccccce
Q psy4774          12 GRPLGMKFDKN-GALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ-IPNSVTVDSD-GMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        12 g~P~Gl~~d~~-G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~-~pndl~v~~~-G~iy~TDs~~~~~~~~~~   88 (120)
                      .+-.||.+-|. |.||-.....+|+.||+.+|..+.+...  .. ...+. ..-++.|.|- .+|.|.-+          
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s--~~-~~al~g~~~gvDFNP~aDRlRvvs~----------   93 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGAS--PL-TVALSGTAFGVDFNPAADRLRVVSN----------   93 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecc--cc-cccccCceEEEecCcccCcEEEEcc----------
Confidence            44568888776 7999886667799999999988777210  11 11221 1336666663 56665533          


Q ss_pred             ecceecCCceEEEEcCCC
Q psy4774          89 FDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~  106 (120)
                             +|+=+|++|++
T Consensus        94 -------~GqNlR~npdt  104 (236)
T PF14339_consen   94 -------TGQNLRLNPDT  104 (236)
T ss_pred             -------CCcEEEECCCC
Confidence                   35667777776

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=92.70  E-value=0.17  Score=37.84  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             ccceEECCCCcEEEEECCCCEEEE-ECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccceecce
Q psy4774          14 PLGMKFDKNGALHVADAYFGLYKV-NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGL   92 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~gi~~v-d~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~~~~~   92 (120)
                      ..-+-++++|.||+.+....+++. .|.++. ..+.+....+.+.-...+.-|.+.++|+||..++.             
T Consensus       132 f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~~-------------  197 (229)
T PF14517_consen  132 FDAVFAGPNGVLYAITPDGRLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKSN-------------  197 (229)
T ss_dssp             EEEEEE-TTS-EEEEETTE-EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-ET-------------
T ss_pred             ceEEEeCCCccEEEEcCCCceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEecC-------------
Confidence            345778999999988753336766 454332 22221111112223334678999999999998764             


Q ss_pred             ecCCceEEEEcCCC
Q psy4774          93 TSGSGSFIKIGPNT  106 (120)
Q Consensus        93 ~~~~G~l~~~d~~~  106 (120)
                          |+|||+.+..
T Consensus       198 ----G~lyr~~~p~  207 (229)
T PF14517_consen  198 ----GKLYRGRPPQ  207 (229)
T ss_dssp             ----TEEEEES---
T ss_pred             ----CEEeccCCcc
Confidence                8999987654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.61  E-value=0.98  Score=34.54  Aligned_cols=37  Identities=30%  Similarity=0.512  Sum_probs=29.0

Q ss_pred             CCccceEECCCCcEEEEECCCC---EEEEECCCCcEEEEe
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG---LYKVNVTTGQTEQLI   48 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g---i~~vd~~~g~~~~~~   48 (120)
                      .+.-||.+..+|.||.+....|   |.++|+++|++..-.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~   84 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV   84 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE
Confidence            4455999988899999977665   999999999875444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.33  E-value=0.83  Score=36.68  Aligned_cols=68  Identities=22%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             CCCCccceEECCC-CcEEEEECCCCEEEEECC--CCcEEEEeccccccCCCCCc-CCCceEEc--CC--CCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDKN-GALHVADAYFGLYKVNVT--TGQTEQLISMDTEIDGAKPQ-IPNSVTVD--SD--GMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~~-G~l~V~d~~~gi~~vd~~--~g~~~~~~~~~~~~~g~~~~-~pndl~v~--~~--G~iy~TDs~~   80 (120)
                      ..+.|.|+++|.. |.|||++...|||+++.+  .+....++.   ...+..|. -.-+|++-  .+  |.|.+|+...
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~---~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~  281 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVA---SADGDGLVADVEGLALYYGSDGKGYLIVSSQGD  281 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEE---EBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred             CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeee---cccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence            3467899999987 799999999999999743  444333332   22343442 23477773  33  5677777754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.18  E-value=1.3  Score=23.15  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             CcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEc
Q psy4774          23 GALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD   68 (120)
Q Consensus        23 G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~   68 (120)
                      +.|||++... .|..+|+++++...-.    .. |   ..|.+++++
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i----~v-g---~~P~~i~~~   42 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATI----PV-G---GYPFGVAVS   42 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEE----EC-C---CCCceEEeC
Confidence            3699998764 4888998776543222    12 2   246777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=91.14  E-value=1.4  Score=34.90  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             cCCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEE
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTE   45 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~   45 (120)
                      ..+..|.|+++.++|+ +||++.. ..+..+|.++.++.
T Consensus        75 ~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   75 KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            4577899999999996 5666554 55888898776543

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.08  E-value=3.9  Score=31.94  Aligned_cols=65  Identities=20%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             CCCCccceEECCCCcEEEE-ECCCC--EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVA-DAYFG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~-d~~~g--i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...|..|++..|.....|+ --.-|  .+.+|+.+|+......   ..++.-|+  ---+|++||+ ||.|+.-
T Consensus         3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~---a~~gRHFy--GHg~fs~dG~~LytTEnd   71 (305)
T PF07433_consen    3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW---APPGRHFY--GHGVFSPDGRLLYTTEND   71 (305)
T ss_pred             CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc---CCCCCEEe--cCEEEcCCCCEEEEeccc
Confidence            3468889999996544443 22223  8899999988765543   33444443  3567889984 7777664

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.78  E-value=3.2  Score=32.16  Aligned_cols=70  Identities=21%  Similarity=0.303  Sum_probs=38.9

Q ss_pred             CCCccceEECC-CCcEEEE-ECCC-----CEEEEECCC-----CcEEEEec-cccccCCCCCc----CCCceEEcCCCCE
Q psy4774          11 CGRPLGMKFDK-NGALHVA-DAYF-----GLYKVNVTT-----GQTEQLIS-MDTEIDGAKPQ----IPNSVTVDSDGMV   73 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~-d~~~-----gi~~vd~~~-----g~~~~~~~-~~~~~~g~~~~----~pndl~v~~~G~i   73 (120)
                      .|.=.||.+++ +|.+|+. |.+.     .++.+....     +.++..-. .....+|.++.    -+-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            34457999994 5566554 5433     255543321     12211100 00123455553    4569999889999


Q ss_pred             EEEeCCC
Q psy4774          74 YWSDSST   80 (120)
Q Consensus        74 y~TDs~~   80 (120)
                      |+++-..
T Consensus        99 ~is~E~~  105 (326)
T PF13449_consen   99 WISSEGG  105 (326)
T ss_pred             EEEeCCc
Confidence            9999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=89.14  E-value=6.3  Score=31.83  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             cceEECCCCc-EE-EEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          15 LGMKFDKNGA-LH-VADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        15 ~Gl~~d~~G~-l~-V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      ...++.|||+ |+ +.+..  ..|+.+|.++|+.+.+..    ..+.    ....+++|||. |+++
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~----~~g~----~~~~~wSPDG~~La~~  279 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS----FPGI----NGAPRFSPDGKKLALV  279 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC----CCCC----cCCeeECCCCCEEEEE
Confidence            4689999995 43 33322  249999998888776643    2221    12567777774 6555

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=89.11  E-value=3.3  Score=32.66  Aligned_cols=70  Identities=21%  Similarity=0.338  Sum_probs=41.2

Q ss_pred             CccceEECCCCcE-EEEECC-------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          13 RPLGMKFDKNGAL-HVADAY-------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        13 ~P~Gl~~d~~G~l-~V~d~~-------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      +-||||+. +|+. ||+-..             .|=+.+|..+++  ++++      |  |.+|+.--.- +|.|||+|+
T Consensus       153 HLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~e--vl~~------G--LsmPhSPRWh-dgrLwvlds  220 (335)
T TIGR03032       153 HLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGE--VVAS------G--LSMPHSPRWY-QGKLWLLNS  220 (335)
T ss_pred             eecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCC--EEEc------C--ccCCcCCcEe-CCeEEEEEC
Confidence            36899997 4544 775311             122335655553  4443      2  3344433332 489999999


Q ss_pred             CCCcccccceecceecCCceEEEEcCCC--ceEe
Q psy4774          79 STKYKLYDGLFDGLTSGSGSFIKIGPNT--QEVL  110 (120)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~G~l~~~d~~~--~~~l  110 (120)
                      .                +|.|+++|+++  .+++
T Consensus       221 g----------------tGev~~vD~~~G~~e~V  238 (335)
T TIGR03032       221 G----------------RGELGYVDPQAGKFQPV  238 (335)
T ss_pred             C----------------CCEEEEEcCCCCcEEEE
Confidence            6                57888888873  4444

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=89.09  E-value=3.8  Score=29.15  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             EECCCCcEEEEECCCCEEEEECCCCcE
Q psy4774          18 KFDKNGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        18 ~~d~~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      .+..++.+|+++....|+.+|+++|++
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~   58 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKV   58 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCE
Confidence            554578999998777799999988974

...

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.82  E-value=0.63  Score=29.60  Aligned_cols=52  Identities=12%  Similarity=0.029  Sum_probs=35.2

Q ss_pred             CceEEcCCCCEEEEeCCCCccccccee---cceecCCceEEEEcCCCceEecCcccc
Q psy4774          63 NSVTVDSDGMVYWSDSSTKYKLYDGLF---DGLTSGSGSFIKIGPNTQEVLQKQTDK  116 (120)
Q Consensus        63 ndl~v~~~G~iy~TDs~~~~~~~~~~~---~~~~~~~G~l~~~d~~~~~~l~~~L~~  116 (120)
                      |||+.-.....|+|.-.. | .+.|+.   ..+..+.|.|+.||+++++++++++..
T Consensus         1 NDIvavG~~sFy~TNDhy-f-~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~g~~~   55 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHY-F-TDPFLRLLETYLGLPWGNVVYYDGKEVKVVASGFSF   55 (86)
T ss_pred             CCEEEECcCcEEEECchh-h-CcHHHHHHHHHhcCCCceEEEEeCCEeEEeeccCCC
Confidence            677777667899988752 2 222322   223568899999998778888888653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=88.70  E-value=5.2  Score=28.40  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             ECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccceecceecCCce
Q psy4774          19 FDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGS   98 (120)
Q Consensus        19 ~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~~~~~~~~~G~   98 (120)
                      +-.+|.+|++.....++.+|.++|+.. + ..  .     +..+..+....++.||+++.                 .|+
T Consensus       170 ~~~~~~v~~~~~~g~~~~~d~~tg~~~-w-~~--~-----~~~~~~~~~~~~~~l~~~~~-----------------~~~  223 (238)
T PF13360_consen  170 VISDGRVYVSSGDGRVVAVDLATGEKL-W-SK--P-----ISGIYSLPSVDGGTLYVTSS-----------------DGR  223 (238)
T ss_dssp             ECCTTEEEEECCTSSEEEEETTTTEEE-E-EE--C-----SS-ECECEECCCTEEEEEET-----------------TTE
T ss_pred             EEECCEEEEEcCCCeEEEEECCCCCEE-E-Ee--c-----CCCccCCceeeCCEEEEEeC-----------------CCE
Confidence            334568999876655888899888743 3 21  1     22233444556678888884                 267


Q ss_pred             EEEEcCCC
Q psy4774          99 FIKIGPNT  106 (120)
Q Consensus        99 l~~~d~~~  106 (120)
                      |+.+|+.+
T Consensus       224 l~~~d~~t  231 (238)
T PF13360_consen  224 LYALDLKT  231 (238)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            77777665

...

>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat

Probab=88.70  E-value=1.3  Score=23.27  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CCCEEEEeCCCCcccccceecceecCCceEEEEcCCC-ceEe
Q psy4774          70 DGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT-QEVL  110 (120)
Q Consensus        70 ~G~iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~-~~~l  110 (120)
                      +|++|.|-+...           ....|-|+|+++.+ +++|
T Consensus         1 dg~lYGTT~~GG-----------~~~~GTvf~~~~~g~~t~L   31 (34)
T TIGR03803         1 GGTLYGTTSGGG-----------ASGFGTLYRLSTAGGTTVL   31 (34)
T ss_pred             CCcEEEEcccCC-----------CCCceeEEEEcCCCCeEEE
Confidence            578999888432           23568999999998 7554

This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.

>KOG1446|consensus

Probab=88.66  E-value=8.8  Score=30.01  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CCccceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+=..|.|.++| .|+++....-++.+|.=+|.+-.=..   . .....+.|-+-.+.|||...++-+.
T Consensus       188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs---~-~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS---G-YPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe---e-ccCCCCcceeEEECCCCcEEEEecC
Confidence            345689999999 55667665558888866776322111   1 2224556778899999998888775

>PRK02888 nitrous-oxide reductase; Validated

Probab=88.60  E-value=1.9  Score=36.84  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             cCCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcE---------E-EEeccccccCCCCCcCCCceEEcCCCCEEEE
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQT---------E-QLISMDTEIDGAKPQIPNSVTVDSDGMVYWS   76 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~---------~-~~~~~~~~~~g~~~~~pndl~v~~~G~iy~T   76 (120)
                      +.+.+|-|+++.|||+ +||+... .-+..||.+..+.         . +++..  +. |   ..|-..+||++|+.|.|
T Consensus       318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev--ev-G---lGPLHTaFDg~G~ayts  391 (635)
T PRK02888        318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP--EL-G---LGPLHTAFDGRGNAYTT  391 (635)
T ss_pred             ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee--cc-C---CCcceEEECCCCCEEEe
Confidence            5678899999999995 5555443 4477788654331         1 22211  11 2   24668999999999954

>PRK01029 tolB translocation protein TolB; Provisional

Probab=88.59  E-value=8.5  Score=30.98  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             cceEECCCCcEEE-EECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCCCccccccee
Q psy4774          15 LGMKFDKNGALHV-ADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKLYDGLF   89 (120)
Q Consensus        15 ~Gl~~d~~G~l~V-~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~~~~~~~~~~   89 (120)
                      ...++.|+|+.++ +...   ..|+.+|.++|+.+.+..      + + .......+++||. |+|+-...         
T Consensus       330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~------~-~-~~~~~p~wSpDG~~L~f~~~~~---------  392 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT------S-P-ENKESPSWAIDSLHLVYSAGNS---------  392 (428)
T ss_pred             cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC------C-C-CCccceEECCCCCEEEEEECCC---------
Confidence            4578899996433 3322   248889998888877742      1 1 1235678899984 77665431         


Q ss_pred             cceecCCceEEEEcCCC--ceEec
Q psy4774          90 DGLTSGSGSFIKIGPNT--QEVLQ  111 (120)
Q Consensus        90 ~~~~~~~G~l~~~d~~~--~~~l~  111 (120)
                           ....||.+|.++  .+.|.
T Consensus       393 -----g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        393 -----NESELYLISLITKKTRKIV  411 (428)
T ss_pred             -----CCceEEEEECCCCCEEEee
Confidence                 235777777665  44443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=88.38  E-value=7.9  Score=31.29  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=34.3

Q ss_pred             ccceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeC
Q psy4774          14 PLGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs   78 (120)
                      ....++.++|+ |+++...   ..|++++.++|+.+.+..     .+..   ....++++|| .|||+..
T Consensus       308 ~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-----~g~~---~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        308 DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-----EGEQ---NLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-----CCCC---CcCeeECCCCCEEEEEEe
Confidence            34578899985 4333222   349999988888776631     2211   1245778887 4666544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=87.92  E-value=7  Score=31.21  Aligned_cols=54  Identities=22%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             cceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          15 LGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        15 ~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      ...++.++|+ |+.+...   ..|+.++.++|+.+.+..    ..+.    .....+++||. |+|+
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g~----~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRGI----NGAPSFSPDGRRLALT  265 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCCC----ccCceECCCCCEEEEE
Confidence            4678899995 4434322   238999988888777753    1221    12456777764 5554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.56  E-value=0.68  Score=36.08  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVT   40 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~   40 (120)
                      -+|.|+++|.+|+|||+...+..+++.++
T Consensus       284 pqaEGiamDd~g~lYIvSEPnlfy~F~~~  312 (316)
T COG3204         284 PQAEGIAMDDDGNLYIVSEPNLFYRFTPQ  312 (316)
T ss_pred             CCcceeEECCCCCEEEEecCCcceecccC
Confidence            46889999999999999988888888763

>smart00284 OLF Olfactomedin-like domains

Probab=87.46  E-value=5.3  Score=30.43  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             ceEECCCCcEEEE---ECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          16 GMKFDKNGALHVA---DAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        16 Gl~~d~~G~l~V~---d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      -+|+|..| |||.   ....|   |-|+||++-+++.....  ...  +-...|.+.+-  |.||+|+|.
T Consensus       132 DlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~--k~sa~naFmvC--GvLY~~~s~  194 (255)
T smart00284      132 DLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYN--KRSASNAFMIC--GILYVTRSL  194 (255)
T ss_pred             EEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC--cccccccEEEe--eEEEEEccC
Confidence            58888877 6554   33334   45899987666555542  222  23345777777  899999973

>PRK05137 tolB translocation protein TolB; Provisional

Probab=87.11  E-value=12  Score=29.84  Aligned_cols=55  Identities=18%  Similarity=0.395  Sum_probs=32.8

Q ss_pred             ccceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          14 PLGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        14 P~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      -...++.|+|+ |+++-..   ..|+.+|.++++...+..    ..+    ......+++||. |+|+
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~----~~~----~~~~~~~spDG~~i~f~  307 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD----SPA----IDTSPSYSPDGSQIVFE  307 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC----CCC----ccCceeEcCCCCEEEEE
Confidence            35678999995 4444222   349999998888776642    111    123456677764 4443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=86.97  E-value=7.1  Score=32.68  Aligned_cols=57  Identities=14%  Similarity=0.277  Sum_probs=39.6

Q ss_pred             cCCCCccceEECCCCc-EEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM   72 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~   72 (120)
                      ...|+-..++++++|. +.|++...-|+.+|.++|+++.+-.       .+-...-++++.++++
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-------S~~~lItdf~~~~nsr  456 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-------SEYGLITDFDWHPNSR  456 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-------cccceeEEEEEcCCce
Confidence            3446666789999997 5555554559999999999887732       1223456888888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=86.96  E-value=10  Score=30.51  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             cceEECCCCc--EEEEECC---CCEEEEECCCCcEEEEec
Q psy4774          15 LGMKFDKNGA--LHVADAY---FGLYKVNVTTGQTEQLIS   49 (120)
Q Consensus        15 ~Gl~~d~~G~--l~V~d~~---~gi~~vd~~~g~~~~~~~   49 (120)
                      ....+.|+|+  +|+....   ..|+.+|..+|+.+.+..
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~  230 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS  230 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec
Confidence            3678899985  5554433   239999999999888863

>KOG0266|consensus

Probab=86.85  E-value=7.1  Score=31.64  Aligned_cols=61  Identities=20%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+.++|.++|+++++-...+ |...|.++|+......    .+..   ..+.+++.++|++.++-+.
T Consensus       247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----~hs~---~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----GHSD---GISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----ccCC---ceEEEEECCCCCEEEEcCC
Confidence            3457899999998888866655 5555777776554442    1222   3578999999998888864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=86.68  E-value=14  Score=29.55  Aligned_cols=53  Identities=21%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             cceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEE
Q psy4774          15 LGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYW   75 (120)
Q Consensus        15 ~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~   75 (120)
                      ..+++.|||+ |+++...   ..|+.+|.++++.+.+...    ..    ......++|||. |+|
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----~~----~~~~~~wSPDG~~I~f  303 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----RS----NNTEPTWFPDSQNLAY  303 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----CC----CcCceEECCCCCEEEE
Confidence            3579999995 5444222   2499999988887777431    11    234677888875 433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=86.36  E-value=14  Score=28.81  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             ceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          16 GMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        16 Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ..++.++|+ |+++...   ..|+.++.++++...+..     .+   .....++++++|. |+++..
T Consensus       282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-----~~---~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-----RG---GYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-----CC---CCccCeEECCCCCEEEEEEc
Confidence            457888885 4444322   249999988777766642     12   1234667788774 555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=86.32  E-value=11  Score=30.03  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             ccceEECCCCc-E-EEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          14 PLGMKFDKNGA-L-HVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        14 P~Gl~~d~~G~-l-~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      -...++.+||+ | |+....  ..|+.+|.++|+.+.+..    ..+.    ....+++|||. |+|+
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~----~~g~----~~~~~~SPDG~~la~~  263 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN----FPGM----TFAPRFSPDGRKVVMS  263 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec----CCCc----ccCcEECCCCCEEEEE
Confidence            34678899995 3 333322  349999998888777653    2221    13556777764 4444

>KOG3567|consensus

Probab=85.90  E-value=1.2  Score=36.63  Aligned_cols=26  Identities=19%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             CCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          55 DGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        55 ~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      .+..|..|++|.+|+||..|+||..+
T Consensus       462 g~~~fylphgl~~dkdgf~~~tdvas  487 (501)
T KOG3567|consen  462 GKNLFYLPHGLSIDKDGFYWVTDVAS  487 (501)
T ss_pred             cCCceecCCcceecCCCcEEeecccc
Confidence            34479999999999999999999974

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=85.57  E-value=0.96  Score=21.60  Aligned_cols=18  Identities=28%  Similarity=0.296  Sum_probs=13.6

Q ss_pred             cCCCceEEcCCCCEEEEe
Q psy4774          60 QIPNSVTVDSDGMVYWSD   77 (120)
Q Consensus        60 ~~pndl~v~~~G~iy~TD   77 (120)
                      +....|..|++|+|||.-
T Consensus         5 n~I~~i~~D~~G~lWigT   22 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGT   22 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEE
T ss_pred             CeEEEEEEcCCcCEEEEe
Confidence            455789999999999863

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.53  E-value=1.3  Score=33.17  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             ceEECCCCcEEEEECCCCEEEEECCCCcEEEEec-cccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          16 GMKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS-MDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        16 Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~-~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      -|.+++.|-||..+....|+|..+-+.....+.. ....+.+..-+..+-|-++++|.||.-++..
T Consensus        85 ~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg  150 (229)
T PF14517_consen   85 FIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDG  150 (229)
T ss_dssp             EEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE
T ss_pred             EEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCC
Confidence            5889999999988765447777532222122221 1111212233445678888889888777764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=85.43  E-value=4.8  Score=32.90  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.+|+.+....|+.+|.++|++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~   83 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKV   83 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChh
Confidence            67899987766699999988874

The alignment model contains an 8-bladed beta-propeller.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=85.31  E-value=16  Score=29.20  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             cceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEe
Q psy4774          15 LGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLI   48 (120)
Q Consensus        15 ~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~   48 (120)
                      ...++.|+|+ |+.+...   ..|+.+|..+|+...+.
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~  236 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA  236 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee
Confidence            3678999995 4333322   23999999888877775

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=85.28  E-value=15  Score=28.67  Aligned_cols=56  Identities=23%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             cceEECCCCcEEE-EECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          15 LGMKFDKNGALHV-ADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        15 ~Gl~~d~~G~l~V-~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...++.++|+.++ +...   ..|+.++.++|+...+..    ..+.    ....++++||. |+++.+
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~~----~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPGM----NGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCCC----ccceEECCCCCEEEEEEC
Confidence            3567888986543 3322   238888988887666642    2221    22467788874 666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=85.10  E-value=17  Score=28.74  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             cceEECCCCc-EEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          15 LGMKFDKNGA-LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        15 ~Gl~~d~~G~-l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      ...++.++|+ |+++-..   ..|+.+|.++++.+.+..    ..+    ......+++||. |||+
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~----~~~~~~~spDg~~i~f~  304 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN----HPA----IDTEPFWGKDGRTLYFT  304 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc----CCC----CcCCeEECCCCCEEEEE
Confidence            3578999995 4433222   249999998888776642    111    123456777764 5554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=84.88  E-value=6.8  Score=30.76  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=18.5

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      ++.+|++.....++.+|+++|+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCE
Confidence            57899887666699999999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=84.81  E-value=18  Score=28.90  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             cceEECCCCc-EEEE-ECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeC
Q psy4774          15 LGMKFDKNGA-LHVA-DAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS   78 (120)
Q Consensus        15 ~Gl~~d~~G~-l~V~-d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs   78 (120)
                      ...++.++|+ |+++ +..  ..|+.++.++++.+.+..     .+.   .....+++++| .|+++..
T Consensus       295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-----~g~---~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-----QGN---YNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-----CCC---CccCEEECCCCCEEEEEEC
Confidence            4578999996 4433 322  239999987777766632     221   22357888887 4666543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=84.67  E-value=19  Score=28.80  Aligned_cols=54  Identities=20%  Similarity=0.285  Sum_probs=33.4

Q ss_pred             cceEECCCCcE-EEEECCC---CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          15 LGMKFDKNGAL-HVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        15 ~Gl~~d~~G~l-~V~d~~~---gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      ..+++.|||+. +++....   .|+.+|.++++...+..    ..+    ......+++||. |+|+
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~----~~~~~~wSpDG~~i~f~  309 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS----GAG----NNTEPSWSPDGQSILFT  309 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc----CCC----CcCCEEECCCCCEEEEE
Confidence            46899999964 4443222   38889987787766642    111    234677788875 5554

>KOG0272|consensus

Probab=84.48  E-value=5.6  Score=32.47  Aligned_cols=60  Identities=22%  Similarity=0.315  Sum_probs=42.7

Q ss_pred             ccceEECCCCcEEEEECCCCEEEE-ECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          14 PLGMKFDKNGALHVADAYFGLYKV-NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~gi~~v-d~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      -.+|+|.+||.|..+.....+-|| |..+|+...+..      | -....-+|+++|+|....|-++-
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------g-H~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------G-HIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEec------c-cccceeeEeECCCceEEeecCCC
Confidence            457999999999876443333333 556787776653      2 34456799999999999998874

>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed

Probab=84.41  E-value=9.5  Score=28.56  Aligned_cols=64  Identities=23%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             CCCccceEECCCCcEEEEECC------CCEEEEECCCCcEEEEecc-ccccCCCCCcCC---CceEEcCCCCEEE
Q psy4774          11 CGRPLGMKFDKNGALHVADAY------FGLYKVNVTTGQTEQLISM-DTEIDGAKPQIP---NSVTVDSDGMVYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~------~gi~~vd~~~g~~~~~~~~-~~~~~g~~~~~p---ndl~v~~~G~iy~   75 (120)
                      .++|+-+|++.+|=+-|-+..      .|-+++|. +|.+..-.+. .....|.|+..|   ..+.|++||+|+.
T Consensus        75 Tg~~lDlAI~G~GFF~V~~~~G~~yTR~G~F~~d~-~G~Lvt~~G~~vlg~~g~pI~lp~~~~~~~I~~dG~i~~  148 (238)
T PRK12690         75 TGGQFDFAIEGEGFFMVETPQGERLTRAGSFTPNA-EGELVDPDGNRLLDAGGAPIFIPPDARSVAVGADGTLSA  148 (238)
T ss_pred             cCCceeEEECCCcEEEEEcCCCCEEeeCCCeEECC-CCCEEcCCCCEeECCCCCccccCCCCceEEECCCCeEEE
Confidence            478999999888744443311      35667776 4654321110 001234477777   3799999999965

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.99  E-value=7.4  Score=32.37  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=19.3

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.||+++....|+.+|.++|+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~   91 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKE   91 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCce
Confidence            57999988766799999999974

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=83.84  E-value=18  Score=28.60  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=23.4

Q ss_pred             cceEECCCCc-E-EEEECC--CCEEEEECCCCcEEEEe
Q psy4774          15 LGMKFDKNGA-L-HVADAY--FGLYKVNVTTGQTEQLI   48 (120)
Q Consensus        15 ~Gl~~d~~G~-l-~V~d~~--~gi~~vd~~~g~~~~~~   48 (120)
                      ...++.|+|+ | |++...  ..|+.++.++|+.+.+.
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~  239 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT  239 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc
Confidence            5678899995 4 333322  24999999888877764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=83.60  E-value=6.8  Score=30.78  Aligned_cols=28  Identities=18%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             ceEECCCCcEEEEECCCCEEEEECCCCcE
Q psy4774          16 GMKFDKNGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        16 Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      .++.+ +|.||+++....++.+|+++|+.
T Consensus       289 ~~~~~-~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        289 DFAVD-GGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             CcEEE-CCEEEEEcCCCeEEEEECCCCcE
Confidence            34443 56888887666699999888863

>PRK03629 tolB translocation protein TolB; Provisional

Probab=83.60  E-value=21  Score=28.59  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             ccceEECCCCcEE--EEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          14 PLGMKFDKNGALH--VADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        14 P~Gl~~d~~G~l~--V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      .....+.++|+.+  +++..  ..|++++.++++.+.+..     .+.   .....++++||. |+++.
T Consensus       289 ~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-----~~~---~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        289 NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-----EGS---QNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-----CCC---CccCEEECCCCCEEEEEE
Confidence            4568899999633  33322  359999988887776632     121   124577788874 54543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=83.59  E-value=18  Score=29.15  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             ceEECCCC-cEEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          16 GMKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        16 Gl~~d~~G-~l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      ..++.||| .|++....   ..|+.++.++++.+.+..    ..+.    -..-.++||| .|||+-..
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~----~~~~----d~~p~~SPDG~~I~F~Sdr  297 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN----YPGI----DVNGNFVEDDKRIVFVSDR  297 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc----CCCc----cCccEECCCCCEEEEEECC
Confidence            35688998 45544332   249999988888777743    1221    1123688888 47777653

>KOG0319|consensus

Probab=83.22  E-value=5.2  Score=34.71  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      |.|  ++++++|.++.|-....|..+|.+++++. + .   ....+.+-...++++++|+.+.++-+.+
T Consensus        22 GG~--~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l-~---s~~~ed~d~ita~~l~~d~~~L~~a~rs   83 (775)
T KOG0319|consen   22 GGP--VAWSSNGQHLYTACGDRVIIIDVATGSIA-L-P---SGSNEDEDEITALALTPDEEVLVTASRS   83 (775)
T ss_pred             CCc--eeECCCCCEEEEecCceEEEEEccCCcee-c-c---cCCccchhhhheeeecCCccEEEEeecc
Confidence            445  99999999999988778999998888764 2 1   1222344456899999998877777754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.19  E-value=3.6  Score=33.18  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=47.4

Q ss_pred             ceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCC--ccc-c--ccee
Q psy4774          16 GMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK--YKL-Y--DGLF   89 (120)
Q Consensus        16 Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~--~~~-~--~~~~   89 (120)
                      |..+.+++ .||-......|+++|.++++.+++...    + ..++.--..+++.+++.++..-..+  +.. .  .++.
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~----p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~  159 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV----P-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR  159 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC----C-cccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence            55555665 554344556799999999888777642    1 1222112333466787775543211  111 1  1233


Q ss_pred             cce-ecCCceEEEEcCCC--ceEecCc
Q psy4774          90 DGL-TSGSGSFIKIGPNT--QEVLQKQ  113 (120)
Q Consensus        90 ~~~-~~~~G~l~~~d~~~--~~~l~~~  113 (120)
                      +.+ ++|..+|+++|.++  .++|.+.
T Consensus       160 e~~~a~p~~~i~~idl~tG~~~~v~~~  186 (386)
T PF14583_consen  160 EFYEARPHCRIFTIDLKTGERKVVFED  186 (386)
T ss_dssp             HHHHC---EEEEEEETTT--EEEEEEE
T ss_pred             HHHhhCCCceEEEEECCCCceeEEEec
Confidence            444 78999999999888  7666543

>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed

Probab=83.03  E-value=12  Score=28.19  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             CCCccceEECCCCcEEEEEC----C--CCEEEEECCCCcEEEEecc-ccccCCCCCcCCC---ceEEcCCCCEEEEe
Q psy4774          11 CGRPLGMKFDKNGALHVADA----Y--FGLYKVNVTTGQTEQLISM-DTEIDGAKPQIPN---SVTVDSDGMVYWSD   77 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~----~--~gi~~vd~~~g~~~~~~~~-~~~~~g~~~~~pn---dl~v~~~G~iy~TD   77 (120)
                      -++|+-+|+..+|=+-|-+.    +  .|-+++|. +|.+..--+. .....| |+..|.   ++.|++||+|+..+
T Consensus        81 Tg~~lDlAI~G~GFF~V~~~~G~~yTR~G~F~~d~-~G~Lvt~~G~~vlg~~g-pI~lp~~~~~i~I~~dG~I~~~~  155 (253)
T PRK12689         81 TKNPLDVAIDGDAFLAVQTPQGERYTRDGALEINA-QGQLVTSDGYPVLGTGG-PITFQPTDTGIAISPDGTVSVNE  155 (253)
T ss_pred             CCCceeEEECCCcEEEEEeCCCcEEEeCCceEECC-CCCEEcCCCCEeecCCC-CeEeCCCCCcEEECCCCeEEEec
Confidence            47899999988874434321    1  35667776 4654322110 001123 666663   79999999997643

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.00  E-value=18  Score=27.90  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             CCCcEEEEECC----------CC-EEEEECCCCcEEEEeccccccCCCCCc--CCCceEEcCCCCEEEEeCCCCcccccc
Q psy4774          21 KNGALHVADAY----------FG-LYKVNVTTGQTEQLISMDTEIDGAKPQ--IPNSVTVDSDGMVYWSDSSTKYKLYDG   87 (120)
Q Consensus        21 ~~G~l~V~d~~----------~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~--~pndl~v~~~G~iy~TDs~~~~~~~~~   87 (120)
                      .++.|.|-|..          .+ ++++|+++.+++.+.....  ...++.  ..-.+-.-++|+++++...        
T Consensus       210 ~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~--~~~~~~s~~~G~~Q~L~nGn~li~~g~--------  279 (299)
T PF14269_consen  210 DDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSD--HPDGFYSPSQGSAQRLPNGNVLIGWGN--------  279 (299)
T ss_pred             CCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeec--CCCcccccCCCcceECCCCCEEEecCC--------
Confidence            56677777662          22 8999998666655543210  122232  2336666778999999986        


Q ss_pred             eecceecCCceEEEEcCCC
Q psy4774          88 LFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        88 ~~~~~~~~~G~l~~~d~~~  106 (120)
                              .|++..|++++
T Consensus       280 --------~g~~~E~~~~G  290 (299)
T PF14269_consen  280 --------NGRISEFTPDG  290 (299)
T ss_pred             --------CceEEEECCCC
Confidence                    36777777766

>smart00564 PQQ beta-propeller repeat

Probab=82.90  E-value=2.7  Score=20.78  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=18.2

Q ss_pred             CCCcEEEEECCCCEEEEECCCCcE
Q psy4774          21 KNGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        21 ~~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      .+|.+|++.....++.+|.++|+.
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~   28 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEI   28 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcE
Confidence            356788887656699999888874

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.84  E-value=6.5  Score=33.70  Aligned_cols=21  Identities=14%  Similarity=-0.005  Sum_probs=16.4

Q ss_pred             cCCCCccceEECCCC-cEEEEE
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVAD   29 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d   29 (120)
                      ...++|.+++++++| .+|++.
T Consensus       232 ~Vdgnpd~v~~spdGk~afvTs  253 (635)
T PRK02888        232 MVDGNLDNVDTDYDGKYAFSTC  253 (635)
T ss_pred             EeCCCcccceECCCCCEEEEec
Confidence            456899999999998 556763

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=82.71  E-value=8.7  Score=29.92  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=35.6

Q ss_pred             EECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          18 KFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        18 ~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      .++.+|++|+......|+.+|++++++. +..   ...+ .....+.=.+..+|+|||++...
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~-W~~---~~~~-~~~~~~~~~~~~~G~i~~g~~~g  121 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTGLVK-WSY---PLLG-AVAQLSGPILGSDGKIYVGSWDG  121 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCCcEE-ecc---cCcC-cceeccCceEEeCCeEEEecccc
Confidence            3777899999833334999999888632 211   1111 12234444444488999988864

>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional

Probab=81.78  E-value=12  Score=28.34  Aligned_cols=67  Identities=27%  Similarity=0.505  Sum_probs=40.7

Q ss_pred             CCCccceEECCCCcEEEEEC------CCCEEEEECCCCcEEEEecc-ccccCCCCCcCC---CceEEcCCCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGALHVADA------YFGLYKVNVTTGQTEQLISM-DTEIDGAKPQIP---NSVTVDSDGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~------~~gi~~vd~~~g~~~~~~~~-~~~~~g~~~~~p---ndl~v~~~G~iy~TDs   78 (120)
                      -++|+-+|+..+|-+-|-..      ..|-+++|. +|.+..--+. .....+.|+..|   ..+.|+++|.|+.+..
T Consensus        88 Tg~~lDlAI~G~GfF~V~~~~g~~YTR~G~F~~d~-~G~Lvt~~G~~vlg~~g~pI~~p~~~~~~~i~~dG~I~~~~~  164 (263)
T PRK12636         88 TGRPLDLAISGDGFFRVGDGDNTAYTRAGNFYLDN-EGNIVNADGLYLLGMNGGRIQIPTDAQSFSIGADGTVSYVDA  164 (263)
T ss_pred             CCCceeEEEcCCcEEEEEeCCCCEEEeCCCeEECC-CCCEEcCCCCEeecCCCCceEeCCCCceEEECCCCeEEEEec
Confidence            47899999988875544331      135777776 4664321110 001222467676   3799999999987643

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.36  E-value=8.5  Score=32.80  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=42.7

Q ss_pred             cceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCC
Q psy4774          15 LGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK   81 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~   81 (120)
                      +-+.-|++|++||... +|+++...+...+..-.    .....++...|.+..|.+|++|+++...+
T Consensus       250 ~ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~----~~~~l~~S~vnsL~~D~dGsLWv~t~~gi  311 (671)
T COG3292         250 LLLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPL----SKMHLGVSTVNSLWLDTDGSLWVGTYGGI  311 (671)
T ss_pred             eeeecccCCCEEEeec-ccceeEecCCCCccccc----cccCCccccccceeeccCCCEeeeccCce
Confidence            3467788899998743 56666554433333221    22345677789999999999999999765

>KOG4649|consensus

Probab=81.05  E-value=15  Score=28.59  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             ECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774          19 FDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus        19 ~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      .|.++-|.-|..+ ...+.+|+++ +--++-.   +..|.-|..|   ++++ +|.||++-..
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~-~~cVyks---kcgG~~f~sP---~i~~g~~sly~a~t~  156 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKT-YGCVYKS---KCGGGTFVSP---VIAPGDGSLYAAITA  156 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccc-cceEEec---ccCCceeccc---eecCCCceEEEEecc
Confidence            4455444334443 4477777763 3344432   4555555433   5666 6788887765

>smart00284 OLF Olfactomedin-like domains

Probab=80.76  E-value=19  Score=27.41  Aligned_cols=57  Identities=16%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             CCcEEEEECC-CCEEEEECCCCcEEEEeccc-cccCCCCCcC----C--CceEEcCCC--CEEEEeCC
Q psy4774          22 NGALHVADAY-FGLYKVNVTTGQTEQLISMD-TEIDGAKPQI----P--NSVTVDSDG--MVYWSDSS   79 (120)
Q Consensus        22 ~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~-~~~~g~~~~~----p--ndl~v~~~G--~iy~TDs~   79 (120)
                      +|.||.--.. ..|+|+|..++.+....... ..++. ++..    .  =|+++|++|  -||-|...
T Consensus        83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~-~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~  149 (255)
T smart00284       83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNN-RFPYAWGGFSDIDLAVDENGLWVIYATEQN  149 (255)
T ss_pred             CceEEEEecCCccEEEEECCCCcEEEEEecCcccccc-ccccccCCCccEEEEEcCCceEEEEeccCC
Confidence            4778774333 56999999887764332110 01111 2211    1  288888888  57777543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.59  E-value=12  Score=32.77  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=19.9

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.||+|.....|+.+|.++|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~  216 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE  216 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE
Confidence            57999998877799999999973

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	2e-21
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	9e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	8e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 5   FKYEQQCGRPLGMKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
            +    CGR   + ++ +N  L++ D Y+ L  V    G   QL    T +DG   +   
Sbjct: 73  AEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLY 129

Query: 64  SVTVD-SDGMVYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
           +VTVD   G+VY++D ST Y          T   +G  IK  P+T+E 
Sbjct: 130 AVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 2   FDGFKYEQQCGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ 60
               +     G P G + D++   L VAD   GL  V       E       + +G + Q
Sbjct: 61  ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA---KKDSEGRRMQ 117

Query: 61  IPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ 107
             N    D +G ++ +  + +          +    GS      + Q
Sbjct: 118 GCNDCAFDYEGNLWITAPAGEVA-PADYTRSMQEKFGSIYCFTTDGQ 163

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
          Q   P G+     G + +       +  +N+    TE    + T            +T+ 
Sbjct: 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITE--YPLPTPDAK-----VMCLTIS 65

Query: 69 SDGMVYWSDSS 79
          SDG V++++++
Sbjct: 66 SDGEVWFTENA 76

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
             P  +    + AL   +     + ++  +   TE    + T   G     P  +T  +D
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITE--FKIPTPASG-----PVGITKGND 193

Query: 71  GMVYWSDSST 80
             +++ +   
Sbjct: 194 DALWFVEIIG 203

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 10  QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
               P G+    NG +   +     + ++       E  +         K   P+ +T+ 
Sbjct: 97  PDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP-------NKGSYPSFITLG 149

Query: 69  SDGMVYWSDSST 80
           SD  ++++++  
Sbjct: 150 SDNALWFTENQN 161

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
             P+G+    + AL   +     + ++  +   TE    + T         P+++T  + 
Sbjct: 183 SGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE--FKIPTPNAR-----PHAITAGAG 235

Query: 71  GMVYWSDSST 80
             +++++   
Sbjct: 236 IDLWFTEWGA 245

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 7/71 (9%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
              P G+   ++G +         +  ++ +    E  +                + V 
Sbjct: 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV-------PTPDAKVMCLIVS 70

Query: 69 SDGMVYWSDSS 79
          S G ++++++ 
Sbjct: 71 SLGDIWFTENG 81

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
             P  +    + AL   +     + ++   TG+ E    + T         P  +T  +D
Sbjct: 146 SYPAFITLGSDNALWFTENQNNSIGRIT-NTGKLE-EYPLPTNAAA-----PVGITSGND 198

Query: 71  GMVYWSDSST 80
           G +++ +   
Sbjct: 199 GALWFVEIMG 208

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
             P G+    NG +         + K+       E    +  +        P  +T+ SD
Sbjct: 104 SGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYE--YDLPNKGSY-----PAFITLGSD 156

Query: 71  GMVYWSDSST 80
             ++++++  
Sbjct: 157 NALWFTENQN 166

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
            RP  +   KN  +   +     + ++       E    + TE        P+ +T   D
Sbjct: 230 ARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQE--YQLQTENAE-----PHGITFGKD 282

Query: 71  GMVYWSDSSTKYKL 84
           G V+++      KL
Sbjct: 283 GSVWFALKCKIGKL 296

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 12  GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
           G+  G+ F  NG L         +  V++        +     +  A     N +T  SD
Sbjct: 72  GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--VETLLTLPDAIF--LNGITPLSD 127

Query: 71  GMVYWSDSST 80
                +DS  
Sbjct: 128 TQYLTADSYR 137

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 10  QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
              +P G+  D  G ++V D    +  +   +          T +       P  + VD+
Sbjct: 65  GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDT 117

Query: 70  DGMVYWSDSS 79
            G VY +D  
Sbjct: 118 QGAVYVADRG 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.27
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.14
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.05
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.98
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.98
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.96
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.91
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.86
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.73
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.56
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.34
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.31
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.21
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.15
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.09
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.88
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.7
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.69
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.65
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.52
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.44
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.38
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.34
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.34
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.24
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.24
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.2
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.18
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.02
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.62
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.56
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.55
3ott_A	758	Two-component system sensor histidine kinase; beta	96.47
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.47
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.43
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.37
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.33
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.3
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.18
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.1
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.03
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.97
3ott_A	758	Two-component system sensor histidine kinase; beta	95.83
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.23
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.99
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.62
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.47
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.13
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.06
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	93.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.6
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.52
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.51
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	92.38
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	92.32
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.29
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	92.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	92.06
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	92.05
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	91.75
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.6
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	91.49
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	91.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	91.14
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	90.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.4
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.22
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	90.18
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	90.18
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	90.11
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.08
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	90.06
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	89.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	89.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	89.32
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	89.08
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	88.66
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.36
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	88.35
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	87.85
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	87.71
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	87.35
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	87.3
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	87.2
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	86.48
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	86.36
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	86.34
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	86.16
3ow8_A	321	WD repeat-containing protein 61; structural genomi	86.08
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	85.31
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	85.07
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	84.8
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	84.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	84.46
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	84.43
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	84.43
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	84.41
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	84.33
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	84.24
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	84.07
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	84.03
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	83.78
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	83.66
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	83.54
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	83.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	83.36
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	83.25
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	83.01
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	82.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	82.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	82.8
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	82.74
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	82.34
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	82.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	81.92
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	81.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	81.72
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	81.66
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	81.35
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	81.23
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	80.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	80.24

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.58  E-value=1.2e-15  Score=114.05  Aligned_cols=101  Identities=32%  Similarity=0.486  Sum_probs=78.1

Q ss_pred             CCCCccceEECC-CCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCCCcccccc
Q psy4774          10 QCGRPLGMKFDK-NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKLYDG   87 (120)
Q Consensus        10 ~~g~P~Gl~~d~-~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~~~~~~~~   87 (120)
                      .+++|.||++++ +|+|||||...+|++++++++++++++.   ...+.+++.||++++++ +|+|||||+...|.+.++
T Consensus        78 ~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           78 LCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLAT---SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             HHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEES---EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             cCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecc---cCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            457899999997 8999999998889999998777777764   34566788999999999 999999999865554433


Q ss_pred             eecce-ecCCceEEEEcCCC--ceEecCc
Q psy4774          88 LFDGL-TSGSGSFIKIGPNT--QEVLQKQ  113 (120)
Q Consensus        88 ~~~~~-~~~~G~l~~~d~~~--~~~l~~~  113 (120)
                      ..... ..+.|+|+++|+++  ++++.++
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  183 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLLKE  183 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEEEE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEeccC
Confidence            33322 35678999999875  5555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=8.5e-12  Score=92.32  Aligned_cols=95  Identities=18%  Similarity=0.298  Sum_probs=71.1

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCccccc---
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYD---   86 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~---   86 (120)
                      .+.|+|++++++|+||||+.. .+|.+++++ |+.++++.   ...+.+++.||+++++++|+|||||+.  |....   
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~---~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~  158 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG---RYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQ  158 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC---EETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGG
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe---ccCCCccCCCCCEEECCCCCEEEeCcC--CCcccccc
Confidence            567999999999999999876 579999985 88888875   446678899999999999999999985  22110   


Q ss_pred             ceecceecCCceEEEEcCCC--ceEec
Q psy4774          87 GLFDGLTSGSGSFIKIGPNT--QEVLQ  111 (120)
Q Consensus        87 ~~~~~~~~~~G~l~~~d~~~--~~~l~  111 (120)
                      ........+.+.||++|+++  ++.+.
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             ccccccccCCCeEEEEcCCCCcEEEEe
Confidence            00011134567899999854  55554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.27  E-value=3.2e-11  Score=88.12  Aligned_cols=100  Identities=19%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCc-ccccce
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-KLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~-~~~~~~   88 (120)
                      .+.|.+|+++++|+|||++.. .+|.++++++|+.+.+..   ...+.+++.||+++++++|++||||+.... ...+..
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~  144 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD---SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY  144 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC---EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee---ccCCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence            467999999999999999976 679999998899887764   334567888999999999999999984110 000000


Q ss_pred             ecceecCCceEEEEcCCC-ceEecCc
Q psy4774          89 FDGLTSGSGSFIKIGPNT-QEVLQKQ  113 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~-~~~l~~~  113 (120)
                      ........++||++++++ ++.+..+
T Consensus       145 ~~~~~~~~~~l~~~~~~g~~~~~~~~  170 (296)
T 3e5z_A          145 GGEMELPGRWVFRLAPDGTLSAPIRD  170 (296)
T ss_dssp             CCCCCSSSCEEEEECTTSCEEEEECC
T ss_pred             cccccCCCcEEEEECCCCCEEEeecC
Confidence            001123456788887766 5555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.20  E-value=2.8e-11  Score=93.84  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=73.4

Q ss_pred             CCCccceEECC--CC--cEEEEECCCC-----EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCC
Q psy4774          11 CGRPLGMKFDK--NG--ALHVADAYFG-----LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK   81 (120)
Q Consensus        11 ~g~P~Gl~~d~--~G--~l~V~d~~~g-----i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~   81 (120)
                      ..+|.||.+.+  +|  +||||+...+     |+++++++ +..+++.   .+.+.+++.|||++++++|++|+|+..+ 
T Consensus       111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~-~~~~~~~---~~~g~~~~~pND~~v~~~G~fyvt~~~~-  185 (355)
T 3sre_A          111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE-KSLLHLK---TIRHKLLPSVNDIVAVGPEHFYATNDHY-  185 (355)
T ss_dssp             GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT-TEEEEEE---EECCTTCSSEEEEEEEETTEEEEEESCS-
T ss_pred             ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC-CEEEEEe---ccccCCCCCCceEEEeCCCCEEecCCcE-
Confidence            36999999955  45  6999998743     99999864 4455554   5788899999999999999999998853 


Q ss_pred             ccccc--ceecceecCCceEEEEcCCCceEecCccc
Q psy4774          82 YKLYD--GLFDGLTSGSGSFIKIGPNTQEVLQKQTD  115 (120)
Q Consensus        82 ~~~~~--~~~~~~~~~~G~l~~~d~~~~~~l~~~L~  115 (120)
                      |....  ........+.|+||+|+|..++++++++.
T Consensus       186 ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~  221 (355)
T 3sre_A          186 FIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFD  221 (355)
T ss_dssp             CSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEES
T ss_pred             eCCcccccchhhccCCccEEEEEECCeEEEeecCCc
Confidence            22210  01111246889999999966888888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.14  E-value=1.9e-10  Score=89.51  Aligned_cols=72  Identities=22%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             cCCCCccceEECCCCcEEEEEC-CC-CEEEEECCCCcEEEEeccccc---cCC----CCCcCCCceEEcCCCCEEEEeCC
Q psy4774           9 QQCGRPLGMKFDKNGALHVADA-YF-GLYKVNVTTGQTEQLISMDTE---IDG----AKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~-~~-gi~~vd~~~g~~~~~~~~~~~---~~g----~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....|.||+++++|+|||||. .+ .|.++++.+|+++.++.....   .+|    ..|+.|++|+++++|+|||+|+.
T Consensus       320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            4467899999999999999998 74 499999667998888753100   111    24899999999999999999996


Q ss_pred             C
Q psy4774          80 T   80 (120)
Q Consensus        80 ~   80 (120)
                      +
T Consensus       400 n  400 (409)
T 3hrp_A          400 G  400 (409)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.14  E-value=2.3e-10  Score=84.42  Aligned_cols=93  Identities=12%  Similarity=0.045  Sum_probs=67.8

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccceec
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFD   90 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~~~   90 (120)
                      .+.|.+++++++|+|||+. ..+|+++|+++++.+.+..   ...+.+++.||+++++++|++||++......     ..
T Consensus        53 ~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-----~~  123 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLAT---VDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-----PA  123 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEE---CCTTCSSEEEEEEEECTTSCEEEEEEECCSB-----TT
T ss_pred             CCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEe---cCCCCCCCCCCCEEECCCCCEEEecCCcccc-----cc
Confidence            4679999999999999997 4689999998899888864   2345578889999999999999998642110     00


Q ss_pred             ceecCCceEEEEcCCC-ceEecC
Q psy4774          91 GLTSGSGSFIKIGPNT-QEVLQK  112 (120)
Q Consensus        91 ~~~~~~G~l~~~d~~~-~~~l~~  112 (120)
                      ....+.|+||++++++ ++.+.+
T Consensus       124 ~~~~~~~~l~~~d~~g~~~~~~~  146 (297)
T 3g4e_A          124 VLERHQGALYSLFPDHHVKKYFD  146 (297)
T ss_dssp             BCCTTCEEEEEECTTSCEEEEEE
T ss_pred             cccCCCcEEEEEECCCCEEEEee
Confidence            1123556777777765 444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=7.2e-10  Score=82.82  Aligned_cols=67  Identities=15%  Similarity=0.187  Sum_probs=55.3

Q ss_pred             ccCCCCccceEECCCCcEEEEECCC-------------------------CEEEEECCCCcEEEEeccccccCCCCCcCC
Q psy4774           8 EQQCGRPLGMKFDKNGALHVADAYF-------------------------GLYKVNVTTGQTEQLISMDTEIDGAKPQIP   62 (120)
Q Consensus         8 ~~~~g~P~Gl~~d~~G~l~V~d~~~-------------------------gi~~vd~~~g~~~~~~~~~~~~~g~~~~~p   62 (120)
                      ....+.|.||+++++|+|||++...                         .|+++|+++|++....      ....+..|
T Consensus        20 ~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------~~~~~~~p   93 (329)
T 3fvz_A           20 YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS------GKNLFYLP   93 (329)
T ss_dssp             GCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE------CTTTCSSE
T ss_pred             ceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc------CCCccCCc
Confidence            4457889999999999999998765                         3899999888865433      23468889


Q ss_pred             CceEEcCCCCEEEEeCCC
Q psy4774          63 NSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        63 ndl~v~~~G~iy~TDs~~   80 (120)
                      ++|+++++|+||++|+..
T Consensus        94 ~gia~d~~g~l~v~d~~~  111 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVAL  111 (329)
T ss_dssp             EEEEECTTSCEEEEETTT
T ss_pred             eEEEECCCCCEEEEECCC
Confidence            999999999999999964

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.05  E-value=3.8e-10  Score=88.80  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             cccCCCCccceEE---------CCCCcEEEEECCCC-EEEEECCCCcEEEEecccc----c-cCC-----CCCcCCCceE
Q psy4774           7 YEQQCGRPLGMKF---------DKNGALHVADAYFG-LYKVNVTTGQTEQLISMDT----E-IDG-----AKPQIPNSVT   66 (120)
Q Consensus         7 ~~~~~g~P~Gl~~---------d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~----~-~~g-----~~~~~pndl~   66 (120)
                      .......|.||++         +++|+|||||..++ |.++++ +|+++.++....    . .+|     .+|+.|.+|+
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia  408 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA  408 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEE
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEE
Confidence            3345678999999         99999999998854 889998 689988886321    0 112     2689999999


Q ss_pred             Ec-CCCCEEEEeCC
Q psy4774          67 VD-SDGMVYWSDSS   79 (120)
Q Consensus        67 v~-~~G~iy~TDs~   79 (120)
                      ++ ++|+|||+|+.
T Consensus       409 vd~~~g~lyVaD~~  422 (433)
T 4hw6_A          409 YDMKRKCFYIGDCD  422 (433)
T ss_dssp             EETTTTEEEEEEGG
T ss_pred             EECCCCEEEEEeCC
Confidence            99 78999999996

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.99  E-value=2.3e-09  Score=83.34  Aligned_cols=66  Identities=24%  Similarity=0.338  Sum_probs=51.2

Q ss_pred             Ccc-ceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCC--------CCCcCCCceEEcCCCCEEEEeC-CC
Q psy4774          13 RPL-GMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDG--------AKPQIPNSVTVDSDGMVYWSDS-ST   80 (120)
Q Consensus        13 ~P~-Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g--------~~~~~pndl~v~~~G~iy~TDs-~~   80 (120)
                      .|. ||++++ +|+|||+|...+ |++++++ |++..++... ...|        .+|+.|++|+++++|+|||+|+ ..
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~  344 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG  344 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEecC-CCEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence            367 999999 589999998755 9999985 6777776521 0011        2488999999999999999999 63

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=1.2e-09  Score=88.07  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             CCcccccCCCCcc-ceEEC-------CCCcEEEEECCCC-EEEEECCCCcEEEEeccccc-----------cCC-----C
Q psy4774           3 DGFKYEQQCGRPL-GMKFD-------KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTE-----------IDG-----A   57 (120)
Q Consensus         3 ~~~~~~~~~g~P~-Gl~~d-------~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~-----------~~g-----~   57 (120)
                      ||.....+...|. |++++       ++|+|||||..++ |.++++ +|.++++++....           .+|     .
T Consensus       363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a  441 (496)
T 3kya_A          363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVA  441 (496)
T ss_dssp             CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred             CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhh
Confidence            4555566778999 88887       6899999998854 999997 6899999874211           122     2


Q ss_pred             CCcCCCceEEcCC-CCEEEEeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          58 KPQIPNSVTVDSD-GMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        58 ~~~~pndl~v~~~-G~iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      +|+.|.+|+++++ |+|||+|+.+                .||.++++++
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N----------------~rIrki~~~~  475 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVG----------------HTIRTISMEQ  475 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTT----------------TEEEEEEECC
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCC----------------CEEEEEECCC
Confidence            6999999999996 9999999974                4777777766

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.98  E-value=1.3e-09  Score=85.71  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             CCCccccc-CCCCccceEECCC---CcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEe
Q psy4774           2 FDGFKYEQ-QCGRPLGMKFDKN---GALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSD   77 (120)
Q Consensus         2 ~~~~~~~~-~~g~P~Gl~~d~~---G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TD   77 (120)
                      |||...+. ...+|.||++|++   |+|||+|....|.++++++++++.++.        ++..|++|+++++|+|||+|
T Consensus       128 ~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--------~~~~P~giavd~dG~lyVad  199 (433)
T 4hw6_A          128 LAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--------NIGQCADVNFTLNGDMVVVD  199 (433)
T ss_dssp             CCEETTSCCCCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--------CCSCEEEEEECTTCCEEEEE
T ss_pred             cCCchHHhcccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--------CCCCccEEEECCCCCEEEEc
Confidence            56777665 6789999999984   899999987669999998898887752        56789999999999999999


Q ss_pred             CC
Q psy4774          78 SS   79 (120)
Q Consensus        78 s~   79 (120)
                      +.
T Consensus       200 ~~  201 (433)
T 4hw6_A          200 DQ  201 (433)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.96  E-value=4.2e-09  Score=78.61  Aligned_cols=68  Identities=24%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCC--cEEEEecccc-ccCCCCCcCCCceEEcC-CCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTG--QTEQLISMDT-EIDGAKPQIPNSVTVDS-DGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g--~~~~~~~~~~-~~~g~~~~~pndl~v~~-~G~iy~TDs   78 (120)
                      ...|.||+++++|+|||+|...+ |.++++++.  .+..+..... ......+..|++|++++ +|+||++|+
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence            45899999999999999998754 999998533  2333422100 01124688999999999 899999997

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.94  E-value=5e-09  Score=76.13  Aligned_cols=95  Identities=22%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             CCCccceEECCC-CcEEEEECCCCEEEEECCCCcEEEE-eccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKN-GALHVADAYFGLYKVNVTTGQTEQL-ISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~-G~l~V~d~~~gi~~vd~~~g~~~~~-~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|.+++++++ |+|||++...+|++++++ |+...+ ..   ...+.++..|++++++++|++|++++.......++.
T Consensus        70 ~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  145 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKK---DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSB---CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             CCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEec---cCCCccccCCcCEEECCCCCEEEEecCccccccccc
Confidence            367999999999 999999987789999997 887766 43   223446678999999999999999985311000110


Q ss_pred             ecceecCCceEEEEcCCC-ceEe
Q psy4774          89 FDGLTSGSGSFIKIGPNT-QEVL  110 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~-~~~l  110 (120)
                       .....+.++|+++++++ ++.+
T Consensus       146 -~~~~~~~~~l~~~~~~g~~~~~  167 (314)
T 1pjx_A          146 -RSMQEKFGSIYCFTTDGQMIQV  167 (314)
T ss_dssp             -BTTSSSCEEEEEECTTSCEEEE
T ss_pred             -ccccCCCCeEEEECCCCCEEEe
Confidence             00123457788887765 4433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.94  E-value=4.7e-09  Score=79.00  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             CCccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCccccc-cee
Q psy4774          12 GRPLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYD-GLF   89 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~-~~~   89 (120)
                      +.|.||++|++|+|||++... .|.++++++|++..++.      ...+.+|.+++++++|.+|+|++..  .+-. +..
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------~~~~~~p~~va~~~~g~l~v~~~~~--~~~~~f~~  319 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------DEKLSWTDSFNFGSDGYLYFDCNQL--HHSAPLNA  319 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE------CGGGSCEEEEEECTTSCEEEEECCG--GGSGGGBT
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE------CCceecCCeeEECCCCcEEEEeCcc--cccccccc
Confidence            589999999999999999874 59999985688777653      1247789999999999999999963  2111 111


Q ss_pred             c-ceecCCceEEEEcCC
Q psy4774          90 D-GLTSGSGSFIKIGPN  105 (120)
Q Consensus        90 ~-~~~~~~G~l~~~d~~  105 (120)
                      . ......++||++++.
T Consensus       320 ~~~~~~~~~~i~~~~~~  336 (343)
T 2qe8_A          320 GENISAPPYYIFRLKPL  336 (343)
T ss_dssp             TCCCCCSCEEEEEECCS
T ss_pred             CCCcCcCCeEEEEEECC
Confidence            1 123345899999754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=8.8e-09  Score=77.49  Aligned_cols=68  Identities=25%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             CCCccceEECCCCcEEEEECC------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      ...|.||++|++|+|||+|..      ..|+++|+++|++....... .....+..+||++++++ +|.+|+||++
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~-~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP-PPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC-TTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC-hhhcccccccceEEEecCCCEEEEEcCc
Confidence            478999999999999999975      46999999888844333211 11133556889999997 4799999985

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.91  E-value=4.7e-09  Score=78.03  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CCCccceEECC-CCcEEEEECC------------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAY------------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG   71 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~------------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G   71 (120)
                      ..+|++|++++ +|+|||+|..                  .+|+++++++++++.+..        .+..||+|+++++|
T Consensus       125 ~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~~~~p~gia~~~dg  196 (322)
T 2fp8_A          125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--------ELHVPGGAEVSADS  196 (322)
T ss_dssp             CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--------EESCCCEEEECTTS
T ss_pred             ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--------CCccCcceEECCCC
Confidence            35799999999 9999999864                  239999998788776642        35679999999998


Q ss_pred             C-EEEEeCC
Q psy4774          72 M-VYWSDSS   79 (120)
Q Consensus        72 ~-iy~TDs~   79 (120)
                      + |||+|+.
T Consensus       197 ~~lyv~d~~  205 (322)
T 2fp8_A          197 SFVLVAEFL  205 (322)
T ss_dssp             SEEEEEEGG
T ss_pred             CEEEEEeCC
Confidence            6 9999986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.88  E-value=1.1e-08  Score=76.72  Aligned_cols=84  Identities=20%  Similarity=0.334  Sum_probs=63.4

Q ss_pred             CCCCccceEECCC-CcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccc
Q psy4774          10 QCGRPLGMKFDKN-GALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDG   87 (120)
Q Consensus        10 ~~g~P~Gl~~d~~-G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~   87 (120)
                      ....|+||++|++ ++||++|... .|.+++.++...++++.     .+..+..|.+|+++. |.||+||..        
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-----~~~~~~~P~giav~~-~~ly~~d~~--------  227 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVFE-DKVFWTDII--------  227 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEET-TEEEEEETT--------
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-----cCCccCCcEEEEEEC-CEEEEEECC--------
Confidence            3578999999975 6999999875 49999997666667753     223567899999974 899999975        


Q ss_pred             eecceecCCceEEEEcCCC---ceEecCccc
Q psy4774          88 LFDGLTSGSGSFIKIGPNT---QEVLQKQTD  115 (120)
Q Consensus        88 ~~~~~~~~~G~l~~~d~~~---~~~l~~~L~  115 (120)
                              +++|+++++.+   ++++..+|.
T Consensus       228 --------~~~V~~~~~~~g~~~~~i~~~~~  250 (316)
T 1ijq_A          228 --------NEAIFSANRLTGSDVNLLAENLL  250 (316)
T ss_dssp             --------TTEEEEEETTTCCCCEEEECSCS
T ss_pred             --------CCeEEEEeCCCCcceEEEecCCC
Confidence                    46888888743   666665543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.87  E-value=8.9e-09  Score=77.89  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             cCCCCccceEECCC-CcEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCC
Q psy4774           9 QQCGRPLGMKFDKN-GALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST   80 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~-G~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~   80 (120)
                      .....|.||++|+. |.||++|..  ..|+++++++...++++.       ..+..||+|++|+ +++|||+|+..
T Consensus       119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-------~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-------SEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-------SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-------CCCCCccEEEEeccCCEEEEEECCC
Confidence            34578999999974 799999964  459999986445555542       2478899999997 58999999964

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=8.5e-09  Score=78.61  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=49.8

Q ss_pred             CCCccceEECC-CCcEEEEECCC-C-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYF-G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~-g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~   80 (120)
                      ...|.||++|+ +|.||++|... + |.++++++...++++.       ..+..||+|++|+ +++|||+|+..
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-------~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-------SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-------CCCCCcceEEEeCCCCEEEEEECCC
Confidence            47899999997 57999999864 4 9999986544455432       3477899999996 68999999975

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.86  E-value=1.3e-08  Score=77.95  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCCccceEECCC----CcEEEEECC--------CCEEEEECCCC-----cEEEEeccccccCCCCCcCCCceEEcCCCCE
Q psy4774          11 CGRPLGMKFDKN----GALHVADAY--------FGLYKVNVTTG-----QTEQLISMDTEIDGAKPQIPNSVTVDSDGMV   73 (120)
Q Consensus        11 ~g~P~Gl~~d~~----G~l~V~d~~--------~gi~~vd~~~g-----~~~~~~~~~~~~~g~~~~~pndl~v~~~G~i   73 (120)
                      .+.|+||+++++    |.|||++..        ..|++++.+++     +.++++.   ..+....+.+++|++++||.|
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~---~~~~~~~h~~~~l~~~pDG~L  148 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLID---GIPGAYIHNGGRIRFGPDGML  148 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEE---EEECCSSCCCCCEEECTTSCE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEE---cCCCCCCcCCceEEECCCCcE
Confidence            367999999997    899999864        45999987644     2444443   223445778999999999999


Q ss_pred             EEEeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          74 YWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        74 y~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      |||+......  ... .......|+|+|+++++
T Consensus       149 yvt~G~~~~~--~~~-~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          149 YITTGDAADP--RLA-QDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             EEECCCTTCG--GGG-TCTTCCSSEEEEECTTS
T ss_pred             EEEECCCCCC--ccc-cCCCCCCeEEEEEcCCC
Confidence            9997642110  000 00123568888888876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=1.9e-08  Score=75.42  Aligned_cols=64  Identities=25%  Similarity=0.346  Sum_probs=50.1

Q ss_pred             CCCCccceEECC-CCcEEEEECCC--CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDK-NGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~-~G~l~V~d~~~--gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ...+|.||++|+ +|.||++|...  .|.++++++...++++.       ..+..||+|++|++ ++|||+|+..
T Consensus       118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~-------~~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-------ENIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-------SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE-------CCCCCceEEEEeccCCEEEEEECCC
Confidence            357899999997 57999999763  49999986444445542       25789999999974 7999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=6e-09  Score=81.74  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             ccCCCCcc-ceEE--------CCCCcEEEEECCC-CEEEEECCCCcEEEEecccc-cc----CC-----CCCcCCCceEE
Q psy4774           8 EQQCGRPL-GMKF--------DKNGALHVADAYF-GLYKVNVTTGQTEQLISMDT-EI----DG-----AKPQIPNSVTV   67 (120)
Q Consensus         8 ~~~~g~P~-Gl~~--------d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~-~~----~g-----~~~~~pndl~v   67 (120)
                      ......|. |+++        |++|+|||||..+ .|.++++ +|+++.++.... ..    +|     .+|+.|.+|++
T Consensus       328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav  406 (430)
T 3tc9_A          328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY  406 (430)
T ss_dssp             GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred             ceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence            34567899 8998        5679999999874 4999997 589888886311 01    22     25899999999


Q ss_pred             cC-CCCEEEEeCCCCcccccceecceecCCceEEEEcCC
Q psy4774          68 DS-DGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPN  105 (120)
Q Consensus        68 ~~-~G~iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~  105 (120)
                      ++ +|+|||+|+.                +.||.+++++
T Consensus       407 d~~~g~lyVaD~~----------------n~rIr~i~~e  429 (430)
T 3tc9_A          407 DEERECFFIGDRE----------------NRRIRKIGYE  429 (430)
T ss_dssp             ETTTTEEEEEEGG----------------GTEEEEEEEC
T ss_pred             ECCCCEEEEEECC----------------CCeEEEEccC
Confidence            99 6999999996                3577777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.80  E-value=2.9e-08  Score=71.69  Aligned_cols=63  Identities=19%  Similarity=0.342  Sum_probs=48.8

Q ss_pred             CCCccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+|+++++|+|||++... .|++++++ |+......     ....+..|++|+++++|+||++|+.
T Consensus       120 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-----~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          120 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG-----CSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-----CTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC-----CCCccCCcEEEEECCCCCEEEEECC
Confidence            3579999999999999999764 59999985 55333221     1134667999999999999999975

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.80  E-value=2.7e-08  Score=77.29  Aligned_cols=63  Identities=21%  Similarity=0.436  Sum_probs=50.7

Q ss_pred             CCCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      ....|.||++|. .++||++|...+ |.++++++...++++.       ..+..|++|++|+ .|.|||||..
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-------~~~~~P~~iavdp~~g~ly~td~~  222 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWG  222 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-------CSSCCEEEEEEETTTTEEEEEECS
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-------CCCCCcceEEEecccCeEEEEeCC
Confidence            346799999997 679999998754 8889987666666653       2467799999998 5899999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=2.3e-08  Score=77.16  Aligned_cols=63  Identities=16%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             CCCccceEECC-CCcEEEEECCC--CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~--gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~   80 (120)
                      ...|.||++|+ +|.||++|...  .|+++++++...++++.       ..+..||+|++|+ +++|||+|+..
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-------~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-------SSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-------CCCCCeeeEEEeCCCCEEEEEECCC
Confidence            46899999997 56999999764  49999986545555542       2477899999996 58999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.79  E-value=2.9e-08  Score=81.54  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=49.1

Q ss_pred             CCccceEECCC-CcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774          12 GRPLGMKFDKN-GALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~-G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      +.|.|||+|.. ++||++|...+ |.++++++...+++..       ..+..|++|++|| +|.|||||..
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-------~~l~~P~~iavdp~~G~lY~tD~g  143 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-------KDLDSPRALALDPAEGFMYWTEWG  143 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-------SSCCCEEEEEEETTTTEEEEEECS
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-------CCCCCcccEEEccCCCeEEEeCCC
Confidence            67999999965 69999998754 8899987555556642       3567899999997 6999999964

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=4e-08  Score=77.00  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      ..+|.|+++++ +|.|||+|...+ |+++++++++...+..    ..  ...+|++|+++++|+ ||++|...
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~--~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQ--DSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CS--SSSCCEEEEECTTSSEEEEEETTT
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cC--CCCcceeEEEcCCCCEEEEEECCC
Confidence            57899999999 899999998754 9999998776645542    11  235799999999998 99999963

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.78  E-value=3.3e-08  Score=74.78  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|+||++|+ +++||++|...+ |.+++.++...++++.       ..+..|++|+++ .+.+|+||..         
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~~P~glav~-~~~lywtd~~---------  227 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GSLPHPFALTLF-EDILYWTDWS---------  227 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SCCSCEEEEEEE-TTEEEEEETT---------
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------CCCCCceEEEEe-CCEEEEEecC---------
Confidence            46899999997 579999998855 9999987656666652       246789999998 4699999986         


Q ss_pred             ecceecCCceEEEEcCCC---ceEecCcc
Q psy4774          89 FDGLTSGSGSFIKIGPNT---QEVLQKQT  114 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~---~~~l~~~L  114 (120)
                             +++|+++++.+   ++++..++
T Consensus       228 -------~~~V~~~~~~~G~~~~~i~~~~  249 (318)
T 3sov_A          228 -------THSILACNKYTGEGLREIHSDI  249 (318)
T ss_dssp             -------TTEEEEEETTTCCSCEEEECCC
T ss_pred             -------CCeEEEEECCCCCceEEEeCCC
Confidence                   35777777633   45554443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.78  E-value=3.7e-08  Score=70.17  Aligned_cols=62  Identities=24%  Similarity=0.346  Sum_probs=48.9

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ..|.+|+++++|+|||++.. ..|.+++++++......       ...+..|++|+++++|+||+++...
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-------FTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-------CSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-------ccCCCCceEEEECCCCCEEEEECCC
Confidence            57999999999999999976 46999998755533221       1235678999999999999999753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.78  E-value=3.8e-08  Score=70.10  Aligned_cols=61  Identities=23%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..|.+|+++++|+|||++...+|++++++++....+.       ...+..|++++++++|+||++|..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~-------~~~~~~p~~i~~~~~g~l~v~~~~  127 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP-------FDGLNYPEGLAVDTQGAVYVADRG  127 (270)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-------CCSCSSEEEEEECTTCCEEEEEGG
T ss_pred             CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeee-------cCCcCCCcceEECCCCCEEEEECC
Confidence            5799999999999999998456999998755443331       123567899999999999999975

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.77  E-value=4.6e-08  Score=74.68  Aligned_cols=90  Identities=12%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             CCCccceEECCC----CcEEEEECC------CCEEEEECCCCc---EEEEeccccccC--CCCCcCCCceEEcCCCCEEE
Q psy4774          11 CGRPLGMKFDKN----GALHVADAY------FGLYKVNVTTGQ---TEQLISMDTEID--GAKPQIPNSVTVDSDGMVYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~----G~l~V~d~~------~gi~~vd~~~g~---~~~~~~~~~~~~--g~~~~~pndl~v~~~G~iy~   75 (120)
                      .+.|+||+++++    +.|||++..      ..|++++.++++   .++++.   ..+  ....+.|++|++++||.|||
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~---~~p~~~~~~h~~~~l~~~pdG~Lyv  150 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLD---GIPARPHGLHSGGRIAFGPDGMLYV  150 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEE---EECCCTTCCCCCCCEEECTTSCEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEE---eCCCCCCCCcCCceEEECCCCCEEE
Confidence            468999999998    799999864      459999876543   334443   222  34577899999999999999


Q ss_pred             EeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          76 SDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        76 TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      |+......  ... .......|+|+|+++++
T Consensus       151 ~~G~~~~~--~~~-~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          151 TTGEVYER--ELA-QDLASLGGKILRLTPEG  178 (352)
T ss_dssp             ECCCTTCG--GGG-GCTTCSSSEEEEECTTS
T ss_pred             EECCCCCC--ccc-cCCCCCceEEEEEcCCC
Confidence            98653210  000 00124568999998875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.75  E-value=6.1e-08  Score=69.97  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ...|.+|+++++|+|||++.. ..|.++++++..+..+.     ..+ .+..|++|+++++|+||+++...
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~-----~~g-~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG-----GEG-ITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEES-----CTT-TSCSEEEEEECTTCCEEEEECSS
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEc-----cCC-ccCCCcEEEECCCCCEEEEeCCC
Confidence            357999999999999999976 56999998533333332     122 36789999999999999999764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.75  E-value=3.5e-08  Score=71.31  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             CCCccceEECC-CCcEEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ...|.||++|+ +|+||+++..   ..|+++++++...+++..       ..+..|++++++++ +.||++|+..
T Consensus       121 ~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~-------~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-------DNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-------TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE-------CCCCCCcEEEEcCCCCEEEEEECCC
Confidence            36899999999 5799999975   248889986444444432       24678999999996 6899999975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.75  E-value=4.3e-08  Score=74.71  Aligned_cols=61  Identities=23%  Similarity=0.327  Sum_probs=48.3

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|+||++|+ +++||++|...+ |.+++.++...++++.       ..+..|++|+++ +|.||+||..
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-------~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-------QGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-------CCCCCceEEEEE-CCEEEEecCC
Confidence            46799999996 579999998855 9999987555555542       136789999994 6899999986

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.74  E-value=4.5e-08  Score=72.49  Aligned_cols=75  Identities=23%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             CCCCccceEECCCCcEEEEECC-CC--EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCccccc
Q psy4774          10 QCGRPLGMKFDKNGALHVADAY-FG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYD   86 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~-~g--i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~   86 (120)
                      ..++|.||+++++|+||||+.. .+  |+++++++|+++.++..    .  ...++|++++.+++++|++|+.       
T Consensus        70 ~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~----~--~~~~~~g~~~~~~~~~~v~d~~-------  136 (306)
T 2p4o_A           70 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----P--DAIFLNGITPLSDTQYLTADSY-------  136 (306)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC----T--TCSCEEEEEESSSSEEEEEETT-------
T ss_pred             CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC----C--CccccCcccccCCCcEEEEECC-------
Confidence            3468999999999999999965 23  99999888998887642    2  2456799998888899999974       


Q ss_pred             ceecceecCCceEEEEcCCC
Q psy4774          87 GLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        87 ~~~~~~~~~~G~l~~~d~~~  106 (120)
                               .|+||++|+.+
T Consensus       137 ---------~g~i~~~d~~~  147 (306)
T 2p4o_A          137 ---------RGAIWLIDVVQ  147 (306)
T ss_dssp             ---------TTEEEEEETTT
T ss_pred             ---------CCeEEEEeCCC
Confidence                     36777777653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.73  E-value=6.7e-08  Score=71.55  Aligned_cols=60  Identities=8%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             CCCccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.|++++++|+|||+|... .|+++|++ ++...++.    ..    ..|++|+++++|++|++|..
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~-g~~~~~~~----~~----~~p~gia~~~dG~l~vad~~   91 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT----VE----GKVSGLAFTSNGDLVATGWN   91 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE----CS----SEEEEEEECTTSCEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCC-CceEEEEe----CC----CCceeEEEcCCCcEEEEecc
Confidence            4789999999999999999764 49999986 55555543    12    25899999999999999964

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.73  E-value=7.1e-08  Score=69.68  Aligned_cols=61  Identities=21%  Similarity=0.418  Sum_probs=48.0

Q ss_pred             CCccceEECCC-CcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCC
Q psy4774          12 GRPLGMKFDKN-GALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~-G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~   79 (120)
                      ..|.||+++++ ++||++|... .|.++++++...+++..       ..+..|+++++++ +|.|||+|..
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-------~~~~~P~~i~vd~~~g~lyv~~~~  142 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-------TGLVNPRGIVTDPVRGNLYWTDWN  142 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEEEEEEETTTTEEEEEECC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-------CCCCCccEEEEeeCCCEEEEEECC
Confidence            68999999985 6999999874 49999986444445542       1356899999999 5899999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.72  E-value=7.6e-08  Score=81.16  Aligned_cols=64  Identities=22%  Similarity=0.395  Sum_probs=51.3

Q ss_pred             CCCCccceEECCCC-cEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ....|.|||+|..+ +||++|...+ |.++++++..+++++.       ..+..|++|+|++. |.|||||...
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-------~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------CTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------CCCCCcceEEEecCCCCEEEecCCC
Confidence            35789999999765 9999998854 9999987666666653       24667999999985 8999999754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.72  E-value=8e-08  Score=78.78  Aligned_cols=61  Identities=21%  Similarity=0.348  Sum_probs=49.2

Q ss_pred             CCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCC
Q psy4774          12 GRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~   79 (120)
                      ..|.|||+|. .++||++|...+ |.++++++..+++++.       ..+..|++|++|+. |.|||||..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-------~~l~~P~~Iavdp~~g~ly~tD~g  147 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-------QELDQPRAIALDPSSGFMYWTDWG  147 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSCCCCEEEETTTTEEEEEECS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe-------CCCCCCceEEEecCCCeEEEeccC
Confidence            6899999998 568999998755 8888986555556642       35778999999985 899999964

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.72  E-value=5e-08  Score=75.75  Aligned_cols=82  Identities=21%  Similarity=0.374  Sum_probs=59.9

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|+||++|+ +++||++|...+ |.+++.++..+++++.     ....+..|.+|+++ .+.||+||..         
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-----~~~~l~~P~gl~v~-~~~lywtd~~---------  309 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVF-EDKVFWTDII---------  309 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-----CSSTTSSEEEEEEE-TTEEEEEESS---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-----CCCCCCCCEEEEEe-CCEEEEecCC---------
Confidence            47899999996 469999998754 9999987666666653     22357788999995 4699999975         


Q ss_pred             ecceecCCceEEEEcCCC---ceEecCcc
Q psy4774          89 FDGLTSGSGSFIKIGPNT---QEVLQKQT  114 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~---~~~l~~~L  114 (120)
                             +++|+++|+.+   ++++..++
T Consensus       310 -------~~~V~~~~~~~G~~~~~i~~~~  331 (400)
T 3p5b_L          310 -------NEAIFSANRLTGSDVNLLAENL  331 (400)
T ss_dssp             -------SCSEEEEESSSCCCCEEEECSC
T ss_pred             -------CCeEEEEEcCCCCceEEEecCC
Confidence                   35677776433   55555444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.70  E-value=8.6e-09  Score=79.42  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             CccceEE---CCCCcEEEE-EC-------------CCCEEEEECC---CCcEEEEeccccc------cCCCCCcCCCceE
Q psy4774          13 RPLGMKF---DKNGALHVA-DA-------------YFGLYKVNVT---TGQTEQLISMDTE------IDGAKPQIPNSVT   66 (120)
Q Consensus        13 ~P~Gl~~---d~~G~l~V~-d~-------------~~gi~~vd~~---~g~~~~~~~~~~~------~~g~~~~~pndl~   66 (120)
                      +|.||.+   |++|+|||+ +.             ...|+++|++   +++....++....      ..|.++..+||++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            5789999   799999995 52             2449999987   6776666553111      1133556799999


Q ss_pred             EcCCCCEEEEeCCC
Q psy4774          67 VDSDGMVYWSDSST   80 (120)
Q Consensus        67 v~~~G~iy~TDs~~   80 (120)
                      +|++||+|+||+..
T Consensus       144 vD~~GnaYVt~s~~  157 (334)
T 2p9w_A          144 QDRDGNSYVAFALG  157 (334)
T ss_dssp             ECTTSCEEEEEEES
T ss_pred             ECCCCCEEEeCCCC
Confidence            99999999999964

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.70  E-value=9.2e-08  Score=70.32  Aligned_cols=64  Identities=20%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             CCCccceEECCCCcEEEEECCC-----CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYF-----GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~-----gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+|+++++|+|||+....     +|+++|+++++.+.+..   .  ..+...|++++++++|++|++++.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~---~--~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE---D--LSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC---S--SSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc---c--CccCCcccceEECCCCCEEEEecc
Confidence            4679999999999999998654     79999998877664432   1  123457899999999999999974

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.69  E-value=1.6e-07  Score=72.41  Aligned_cols=64  Identities=20%  Similarity=0.460  Sum_probs=51.4

Q ss_pred             CCCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~   80 (120)
                      ...+|.||++|+ ++.||++|...+ |++++++++.++.++.       ..+..|++|++|+ .|+|||||+..
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------~~~~~p~glavd~~~g~lY~~d~~~  180 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGGLAVDWVHDKLYWTDSGT  180 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-------SSCSCCCCEEEETTTTEEEEEETTT
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-------CCCCCccEEEEEeCCCeEEEEcCCC
Confidence            457899999995 579999998754 9999998766666653       2356799999997 68999999964

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.68  E-value=1e-07  Score=78.10  Aligned_cols=63  Identities=22%  Similarity=0.343  Sum_probs=50.1

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      .+.|.|||+|. .++||++|...+ |.+++.++...+++..       ..|+.|++|+++|. |.|||||...
T Consensus       391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~-------~~l~~P~~iavdp~~G~ly~tD~g~  456 (619)
T 3s94_A          391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS-------EDLEEPRAIVLDPMVGYMYWTDWGE  456 (619)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------TTCCSEEEEEEETTTTEEEEEECSS
T ss_pred             CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE-------CCCCCeeeEEEEcCCCcEEEecCCC
Confidence            47899999996 579999998755 8888886555555642       25888999999985 9999999753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.67  E-value=1.8e-07  Score=66.90  Aligned_cols=62  Identities=11%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+|+++++|+|||++.. .+|.++++ +++...+..     . .....|.+|+++++|+||+++..
T Consensus       182 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-----~-~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          182 ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI-----P-TPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-----S-STTCCEEEEEECSTTCEEEEETT
T ss_pred             CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC-----C-CCCCCceeEEECCCCCEEEeccC
Confidence            457899999999999999875 56999999 787665531     1 24567899999999999999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.67  E-value=2.3e-07  Score=66.44  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ...|.+|+++++|+|||++.. .+|+++++ +++...+..      ...+..|++++++++|+||+++...
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~  208 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPL------PTNAAAPVGITSGNDGALWFVEIMG  208 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC------SSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeC------CCCCCCcceEEECCCCCEEEEccCC
Confidence            467999999999999999975 45999998 677766531      1245678999999999999999753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=1.1e-07  Score=76.58  Aligned_cols=86  Identities=12%  Similarity=0.083  Sum_probs=63.4

Q ss_pred             CCCccceEECCCCc-EEEEECCCC-EEEEECC--CCcE---EEEecc-ccc--cCC----CCCcCCC-ceEEc-------
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG-LYKVNVT--TGQT---EQLISM-DTE--IDG----AKPQIPN-SVTVD-------   68 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~--~g~~---~~~~~~-~~~--~~g----~~~~~pn-dl~v~-------   68 (120)
                      .+.|.+|+++++|+ |||+|..++ |++++.+  ++.+   ++++.. ...  .+|    .+|+.|. +++++       
T Consensus       309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            46799999999998 899998754 8887653  3333   466652 110  112    3789999 88887       


Q ss_pred             CCCCEEEEeCCCCcccccceecceecCCceEEEEcCCC-ceEecC
Q psy4774          69 SDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT-QEVLQK  112 (120)
Q Consensus        69 ~~G~iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~-~~~l~~  112 (120)
                      ++|+|||+|+.                +.||.++++++ +++++.
T Consensus       389 ~~g~lyVaD~~----------------N~rIr~i~~~G~v~TiaG  417 (496)
T 3kya_A          389 EEYDFYFVDRL----------------NFCVRKVTPEGIVSTYAG  417 (496)
T ss_dssp             CCEEEEEEEGG----------------GTEEEEECTTCBEEEEEE
T ss_pred             CCCeEEEEECC----------------CCEEEEEeCCCCEEEEec
Confidence            67999999996                46999999888 777764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.66  E-value=2.4e-07  Score=66.35  Aligned_cols=62  Identities=11%  Similarity=0.244  Sum_probs=50.8

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+|+++++|+|||++.. .+|.+++++ ++...+..     . ..+..|.+++++++|++|+++..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~-----~-~~~~~~~~i~~~~~g~l~v~~~~   81 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEV-----P-TPDAKVMCLIVSSLGDIWFTENG   81 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC-----S-STTCCEEEEEECTTSCEEEEETT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEEC-----C-CCCCcceeEEECCCCCEEEEecC
Confidence            468999999999999999975 569999987 77766531     1 23567899999999999999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.64  E-value=3.2e-07  Score=65.66  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+|++|++|+|||++.. .+|.+++++ ++...+..     . .....|.+++++++|++|+++..
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-----~-~~~~~~~~i~~~~~g~l~v~~~~   76 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-----P-TPDAKVMCLTISSDGEVWFTENA   76 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-----S-STTCCEEEEEECTTSCEEEEETT
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-----C-cccCceeeEEECCCCCEEEeCCC
Confidence            468999999999999999875 569999997 77766642     1 12357899999999999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.61  E-value=1.8e-07  Score=77.53  Aligned_cols=81  Identities=22%  Similarity=0.377  Sum_probs=60.0

Q ss_pred             CCCccceEECCC-CcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKN-GALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~-G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|+||++|++ ++||++|...+ |.++++++..+++++.     ....+..|.+|+++.+ .|||||..         
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~-----~~~~~~~P~glavd~~-~lywtd~~---------  603 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVFED-KVFWTDII---------  603 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC-----CSSSCSSCCCCEEETT-EEEEECST---------
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe-----cCCcCCCceEeEEECC-EEEEEeCC---------
Confidence            568999999976 69999998754 9999987555666653     2235778999999875 89999975         


Q ss_pred             ecceecCCceEEEEcCCC---ceEecCc
Q psy4774          89 FDGLTSGSGSFIKIGPNT---QEVLQKQ  113 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~---~~~l~~~  113 (120)
                             +++|+++++.+   +++|..+
T Consensus       604 -------~~~V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          604 -------NEAIFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             -------TTCEEEEETTTEEEEECCCTT
T ss_pred             -------CCeEEEEEccCCCceEEeecC
Confidence                   35777777654   4444433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.61  E-value=1.6e-07  Score=77.11  Aligned_cols=63  Identities=17%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             CCCCccceEECC-CCcEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDK-NGALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~-~G~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ....|.||++|| +|.||++|..  ..|.++++++..+++++.        .+..||+|++|++ ++||++|+..
T Consensus       121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--------~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--------NVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--------SCSSEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--------CCCCcceEEEccccCEEEEEECCC
Confidence            357899999997 6899999964  359999997666666652        4678999999985 7999999964

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.59  E-value=2.1e-07  Score=68.42  Aligned_cols=64  Identities=16%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             CCCccceEECCCCc-EEEEECC-CCEEEEEC--CCCcEE---EEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAY-FGLYKVNV--TTGQTE---QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~--~~g~~~---~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|+||+++++|+ ||+++.. ..|++++.  ++|++.   ++...    .. ....|+++++|++|+||+++..
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~----~~-~~~~p~g~~~d~~G~lwva~~~  218 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL----EK-EEQIPDGMCIDAEGKLWVACYN  218 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC----CG-GGCEEEEEEEBTTSCEEEEEET
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC----CC-CCCCCCeeEECCCCCEEEEEcC
Confidence            35799999999995 8999986 45888864  567653   34321    11 1246899999999999999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.59  E-value=1.5e-07  Score=70.28  Aligned_cols=64  Identities=11%  Similarity=0.017  Sum_probs=52.0

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..|.+++++++|++||+. ..+|+++|+++|+.+.+..   ...+.+.+.+|+++++++|++|+++..
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~---~~~~~~~~~~~~i~~d~~G~l~v~~~~  153 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAE---LESDLPGNRSNDGRMHPSGALWIGTMG  153 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEEC---SSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEee---CCCCCCCCCCCCEEECCCCCEEEEeCC
Confidence            568899999999999986 4679999998898887764   122345677999999999999999863

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.59  E-value=1.2e-07  Score=78.68  Aligned_cols=63  Identities=25%  Similarity=0.330  Sum_probs=48.5

Q ss_pred             CCCccceEECCC-CcEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKN-GALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~-G~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ...|.||++|+. |.||++|..  ..|.++++++...++++.       ..+.+||+|+++++ ++|||+|+..
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-------~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-------ENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-------SSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-------CCCCCccEEEEeccCCEEEEEecCC
Confidence            467999999985 799999865  359999885433344432       25789999999985 7999999874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.56  E-value=2.7e-07  Score=77.78  Aligned_cols=82  Identities=21%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|+||++|+ +++||++|...+ |.+++.++..+.+++.     .+..+..|.+|+++. ++|||||..         
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~-----~~~~l~~P~glav~~-~~lYwtD~~---------  621 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVFE-DKVFWTDII---------  621 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEET-TEEEEEETT---------
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-----CCCccCCCCEEEEeC-CEEEEEECC---------
Confidence            46899999994 579999998754 9999997666666653     233566778888865 599999986         


Q ss_pred             ecceecCCceEEEEcCCC---ceEecCcc
Q psy4774          89 FDGLTSGSGSFIKIGPNT---QEVLQKQT  114 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~---~~~l~~~L  114 (120)
                             +++|+++|+.+   +++|..+|
T Consensus       622 -------~~~I~~~dk~tG~~~~~l~~~l  643 (791)
T 3m0c_C          622 -------NEAIFSANRLTGSDVNLLAENL  643 (791)
T ss_dssp             -------TTEEEEEETTTCCCCEEEECSC
T ss_pred             -------CCEEEEEeCCCCcceEEeecCC
Confidence                   35777776433   55555554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.51  E-value=6.9e-07  Score=73.19  Aligned_cols=98  Identities=11%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             CCCccceEECC-CCcEEEEECC---------------------CC-EEEEECCCC-------cEEEEeccccc-------
Q psy4774          11 CGRPLGMKFDK-NGALHVADAY---------------------FG-LYKVNVTTG-------QTEQLISMDTE-------   53 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~---------------------~g-i~~vd~~~g-------~~~~~~~~~~~-------   53 (120)
                      ..||.++++++ +|++|++-..                     .| |+++.++.+       ++++++..+..       
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            36899999998 5799998321                     13 999976432       25555421110       


Q ss_pred             -------cCCCCCcCCCceEEcCCCCEEE-EeCCCCcccccceecceecCCceEEEEcCCC--ceEecCc
Q psy4774          54 -------IDGAKPQIPNSVTVDSDGMVYW-SDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT--QEVLQKQ  113 (120)
Q Consensus        54 -------~~g~~~~~pndl~v~~~G~iy~-TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~--~~~l~~~  113 (120)
                             ..+.+|+.||+|+|+++|+||| ||+..  .... .  .....+.+||+++|.+  ++.++.+
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~--~~~g-~--~~~~gnn~v~~~dp~tGel~~fl~~  527 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDS--SNAG-D--FAGMGNNQMLCADPATGEIRRFMVG  527 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCC--CCSG-G--GTTCCSCEEEEECTTTCCEEEEEEC
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCc--Cccc-c--ccccCCceEEEEeCCCCeEEEEEeC
Confidence                   1235799999999999999999 99873  2110 0  0123445899999965  7777654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.49  E-value=4.7e-07  Score=69.07  Aligned_cols=65  Identities=11%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC----CCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD----GMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~----G~iy~TDs~   79 (120)
                      ...|.+|+++++|+|||++....|++++  +|+.+.++..  .........|++|+++++    |.||++++.
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~--~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAEL--SVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecc--eEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            5689999999999999999876699998  4777776642  111223567999999997    899999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.44  E-value=1.1e-06  Score=63.88  Aligned_cols=61  Identities=7%  Similarity=-0.002  Sum_probs=49.2

Q ss_pred             CCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+..|.|++++++|+ ||+++.. .+|++++++++ .+.+..        +...|++++++++|++|+++..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~   88 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH--------PSHHQNGHCLNKQGHLIACSHG   88 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEES--------SCSSEEEEEECTTCCEEEEETT
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC--------CCCCcceeeECCCCcEEEEecC
Confidence            456799999999997 8888876 56999999876 665542        2346889999999999999975

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.43  E-value=5.2e-07  Score=65.36  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCCCccccccee
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKLYDGLF   89 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~~~~~~~~~~   89 (120)
                      +.|.+|++|++|+|||++.. .+|.++++++|+......       .+...|.+++++++|+ ||+++..          
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~----------  288 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-------CPFEKPSNLHFKPQTKTIFVTEHE----------  288 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-------CSSSCEEEEEECTTSSEEEEEETT----------
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-------CCCCCceeEEECCCCCEEEEEeCC----------
Confidence            56999999999999999865 569999997565432221       1235688999999998 9999985          


Q ss_pred             cceecCCceEEEEcCCC
Q psy4774          90 DGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        90 ~~~~~~~G~l~~~d~~~  106 (120)
                            .|.|++++++.
T Consensus       289 ------~~~l~~~~~~~  299 (314)
T 1pjx_A          289 ------NNAVWKFEWQR  299 (314)
T ss_dssp             ------TTEEEEEECSS
T ss_pred             ------CCeEEEEeCCC
Confidence                  36788887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.39  E-value=1.7e-06  Score=66.57  Aligned_cols=65  Identities=14%  Similarity=0.014  Sum_probs=47.3

Q ss_pred             CCccceEECCCCcEEEEECCC-C-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYF-G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~-g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      +.|++|++|++|+.||++... + |+||++++.+++++...  .........+|+|++.|+|+ |++.++
T Consensus       137 ~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~--~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          137 FGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWE--SGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEEC--CCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             cCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeec--CCCcccccCcceEEEeCCCCEEEEEcC
Confidence            458899999999999987644 4 99999964445555421  22233456799999999985 666666

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.37  E-value=4.6e-07  Score=70.10  Aligned_cols=62  Identities=8%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             cCCCCccceEECCCCcEEEEECC-----------------C-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAY-----------------F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD   70 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~-----------------~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~   70 (120)
                      ....+||.++++++|++||.+..                 . .|+++++  +++++++.        .+..||+|++++|
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~--------~l~~pNGia~spD  231 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE--------GFDFANGINISPD  231 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEE--------EESSEEEEEECTT
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeec--------CCcccCcceECCC
Confidence            34688999999999999998751                 2 3999998  36666653        3678999999999


Q ss_pred             C-CEEEEeCCC
Q psy4774          71 G-MVYWSDSST   80 (120)
Q Consensus        71 G-~iy~TDs~~   80 (120)
                      | .+||+|+..
T Consensus       232 g~~lYvadt~~  242 (355)
T 3sre_A          232 GKYVYIAELLA  242 (355)
T ss_dssp             SSEEEEEEGGG
T ss_pred             CCEEEEEeCCC
Confidence            8 799999964

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.36  E-value=4.4e-06  Score=61.25  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=49.8

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.+++++++|+||+++.. .+|+++|+++++...+..   .    .-..|++++++++|++|+++..
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~---~----~~~~~~~i~~~~dg~l~v~~~~  106 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---S----HKANPAAIKIHKDGRLFVCYLG  106 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---C----SSSSEEEEEECTTSCEEEEECT
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee---C----CCCCcceEEECCCCcEEEEeCC
Confidence            356889999999999999876 459999998888776642   1    1245789999999999999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.36  E-value=9.6e-07  Score=65.95  Aligned_cols=77  Identities=16%  Similarity=0.265  Sum_probs=55.0

Q ss_pred             CCCccceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC-CCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~-~G~iy~TDs~~~~~~~~~~   88 (120)
                      +..|.+|+++++| .|||++.  .|+++|++++++....    -... ....|.++++++ +|+||+++... |      
T Consensus       224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~~-~~~~p~gi~vdp~~g~lyva~~~~-y------  289 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLEF-RDTKYYGLTVNPNNGEVYVADAID-Y------  289 (328)
T ss_dssp             TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBCC-CSSCEEEEEECTTTCCEEEEECTT-S------
T ss_pred             CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eecC-CCCceEEEEEcCCCCeEEEEcccc-c------
Confidence            3579999999976 7888876  7999999888752110    0111 146799999998 68999999431 1      


Q ss_pred             ecceecCCceEEEEcCCC
Q psy4774          89 FDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~  106 (120)
                           ...|+|++||+++
T Consensus       290 -----~~~~~V~v~d~~g  302 (328)
T 3dsm_A          290 -----QQQGIVYRYSPQG  302 (328)
T ss_dssp             -----SSEEEEEEECTTC
T ss_pred             -----ccCCEEEEECCCC
Confidence                 1257888888776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.34  E-value=3.1e-06  Score=62.17  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=48.4

Q ss_pred             CCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+.|++++++|+ ||+++.. .+|+++++ +|+.+++..        +-..|++++++++|++|+++..
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~--------~~~~~~gl~~d~dG~l~v~~~~  105 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD--------ATAFTNGNAVDAQQRLVHCEHG  105 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEE--------SCSCEEEEEECTTSCEEEEETT
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC--------CCCccceeeECCCCCEEEEECC
Confidence            45688999999997 8889876 45999998 577776652        2245899999999999999875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.31  E-value=3.7e-06  Score=64.86  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CCCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC----CCEEEEeC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD----GMVYWSDS   78 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~----G~iy~TDs   78 (120)
                      -...|.+|+++++|+|||++.. ..|+++++++|+.+.+.... .+.......+++|+++|+    |.||++.+
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-GVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC-ceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            3578999999999999999984 44999998778877664321 122223557899999984    89999865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.29  E-value=8.3e-06  Score=59.97  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      .+.|.+..+.++|+++|++...+ |+.+|+++|++.--... .+.++.++..|.++.+.++|++|++++..
T Consensus       164 ~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          164 SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA-NDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG-GGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC-CCCCCccccccccceEcCCCCEEEEeccC
Confidence            36799999999999999987654 99999987875322221 12345578889999999999999999854

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.21  E-value=6.2e-06  Score=62.90  Aligned_cols=89  Identities=7%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CCccceEECC----CCcEEEEECC--------CCEEEEECCCC-----cEEEEeccccccC--CCCCcCCCceEEcCCCC
Q psy4774          12 GRPLGMKFDK----NGALHVADAY--------FGLYKVNVTTG-----QTEQLISMDTEID--GAKPQIPNSVTVDSDGM   72 (120)
Q Consensus        12 g~P~Gl~~d~----~G~l~V~d~~--------~gi~~vd~~~g-----~~~~~~~~~~~~~--g~~~~~pndl~v~~~G~   72 (120)
                      +.|+||++++    ++.|||++..        ..|++++.+.+     ..++++.   ...  ....+.+++|++++||.
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~---~~p~~~~~~h~~~~l~~~pdG~  142 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFR---QMPKLSTGNHFGGRLVFDGKGY  142 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEE---CSSCCBSSSCCCCCEEECSSSE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEE---ECCCCCCCcccCccEEECCCCc
Confidence            5689999999    5899999753        24888876432     2344442   122  12456789999999999


Q ss_pred             EEEEeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          73 VYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        73 iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      ||||........  . ........|+|+|+++++
T Consensus       143 Lyv~~Gd~~~~~--~-~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A          143 LFIALGENNQRP--T-AQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEECCTTCGG--G-GGCTTSCTTEEEEEETTS
T ss_pred             EEEEECCCCCCC--c-cCCCCCCCeEEEEECCCC
Confidence            999975432100  0 001124568888888875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.15  E-value=9.4e-06  Score=64.23  Aligned_cols=92  Identities=10%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             CCccceEECC----CCcEEEEECC-------------CCEEEEECCC--Cc---EEEEeccccccCCCCCcCCCceEEcC
Q psy4774          12 GRPLGMKFDK----NGALHVADAY-------------FGLYKVNVTT--GQ---TEQLISMDTEIDGAKPQIPNSVTVDS   69 (120)
Q Consensus        12 g~P~Gl~~d~----~G~l~V~d~~-------------~gi~~vd~~~--g~---~~~~~~~~~~~~g~~~~~pndl~v~~   69 (120)
                      +.++||++++    ++.|||+...             ..|+|++.+.  ++   .++++.   .......+.+++|+|++
T Consensus        77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~---~~p~~~~H~~~~l~f~p  153 (454)
T 1cru_A           77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLA---GLPSSKDHQSGRLVIGP  153 (454)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEE---EECCCSSCCEEEEEECT
T ss_pred             CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEE---cCCCCCCCCCCeEeECC
Confidence            5577999999    6899999752             3488886532  22   344543   22333567899999999


Q ss_pred             CCCEEEEeCCCCcc-------ccc--ce-------ecceecCCceEEEEcCCC
Q psy4774          70 DGMVYWSDSSTKYK-------LYD--GL-------FDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        70 ~G~iy~TDs~~~~~-------~~~--~~-------~~~~~~~~G~l~~~d~~~  106 (120)
                      ||.||||-......       ..+  ..       ........|+|+|+++++
T Consensus       154 DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG  206 (454)
T 1cru_A          154 DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDG  206 (454)
T ss_dssp             TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTS
T ss_pred             CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCC
Confidence            99999995432110       000  00       001123579999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.13  E-value=1.5e-05  Score=59.40  Aligned_cols=65  Identities=12%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      ...|.+|+++++|+|||++.. ..|.++|++++++......  .....+...|+++++ .++.||+++.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDMDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCccccCCCcceEEE-ECCEEEEEcC
Confidence            578999999888999999944 5699999998876543321  111224567999999 5789999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.13  E-value=1.5e-05  Score=61.44  Aligned_cols=90  Identities=12%  Similarity=0.137  Sum_probs=58.5

Q ss_pred             CCCccceEECCC----CcEEEEEC---CCCEEEEECCCC--------cEEEEeccccccCCCCCcCCCceEEcCCCCEEE
Q psy4774          11 CGRPLGMKFDKN----GALHVADA---YFGLYKVNVTTG--------QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~----G~l~V~d~---~~gi~~vd~~~g--------~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~   75 (120)
                      .+.|+||+++|+    |.|||+..   ...|+|+....+        +.++++.   .......+..+.|++++||.|||
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~---~~p~~~~H~g~~l~fgpDG~Lyv  155 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFR---GIPKGVIHNGGRIAFGPDKMLYA  155 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEE---EECCCSSCCCCCEEECTTSCEEE
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEE---cCCCCCCccCccccCCCCCCEEE
Confidence            467899999984    89999853   245999976542        2455543   22333567789999999999999


Q ss_pred             EeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          76 SDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        76 TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      |-.......   .........|+|+|+++++
T Consensus       156 t~Gd~~~~~---~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          156 GTGESGDTG---LSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             ECBCTTCGG---GTTCTTCSTTCEEEECTTS
T ss_pred             EECCCCCCc---cccCCCCCCCEEEEEeCCC
Confidence            954321100   0000123568888888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.13  E-value=1.9e-05  Score=58.76  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             CCccceEECCCC-cEEEEECC-CCEEEEECC--CC-cE---EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAY-FGLYKVNVT--TG-QT---EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~-~gi~~vd~~--~g-~~---~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..|+|++++++| .||+++.. ..|++++.+  +| ++   .++..    ..+ ....|+++++|++|+||+++..
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~----~~~-~~~~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID----STG-IKGGMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE----CTT-SSSEEEEEEECTTSCEEEEEET
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE----CCC-CCCCCCeeEECCCCCEEEEEeC
Confidence            568999999999 48999876 459999864  56 42   23332    111 2246799999999999999853

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.12  E-value=3.8e-06  Score=64.26  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC----CCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD----GMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~----G~iy~TDs~   79 (120)
                      ....|.+|+++++|+|||++....|+++++ +|+ +++...  .........|++|+++++    |.||++++.
T Consensus        27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             SCSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence            357899999999999999998766999986 577 666532  111123456899999996    899999873

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.09  E-value=1.2e-05  Score=63.59  Aligned_cols=70  Identities=10%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CCCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCC-CCCcCCCceEEcC----CCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDG-AKPQIPNSVTVDS----DGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g-~~~~~pndl~v~~----~G~iy~TDs~   79 (120)
                      ....|.+|+++++|+|||++...+ |+++++++|+.+++......... .....+.+|+++|    +|.||++++.
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            357899999999999999998754 99999877888777642111100 0123456999999    7899999973

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.08  E-value=2e-05  Score=58.38  Aligned_cols=67  Identities=19%  Similarity=0.302  Sum_probs=48.9

Q ss_pred             CCccceEECCC-CcEEEEECC-CCEEEEECCCCcEEEEeccccccCC--CCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKN-GALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDG--AKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~-G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g--~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..+.||++|+. |+|||.... +-|+.+|.+ |++...........|  ..+..|.||++|++|+||++.-.
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence            45889999998 689998665 559999985 665555443212222  24778999999999999999543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.90  E-value=8.5e-05  Score=55.27  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             CCccceEECCCCcEEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+|.||+++++|.||++...   ..|.++|+++|++..-..    .+..+  ++-+++++. +.||+++..
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~~~--fgeGi~~~g-~~lyv~t~~   84 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK----MDDSY--FGEGLTLLN-EKLYQVVWL   84 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----CCTTC--CEEEEEEET-TEEEEEETT
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----cCCCc--ceEEEEEeC-CEEEEEEec
Confidence            35789999998999999753   349999999998654432    22223  345777773 588888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.88  E-value=0.00013  Score=53.01  Aligned_cols=68  Identities=18%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             CCCccceEECCCCc-EEEEECCC-CEEEEECCCCcEEEEeccccccC--CCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISMDTEID--GAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~--g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...|.+++++++|+ +||++... .|..+|++++++...........  ......|++++++++|+ +|+++.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  160 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI  160 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec
Confidence            46799999999996 89998764 48999998887644432110000  01122478999999985 899884

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.88  E-value=2.6e-05  Score=63.99  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             cCCCCccceEECCCCcEEE-EECC------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEE
Q psy4774           9 QQCGRPLGMKFDKNGALHV-ADAY------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVY   74 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V-~d~~------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy   74 (120)
                      .....|.+|+||++|+||+ .|..            ++++++++++|++..++.      +..+..||+++++||+ .||
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~------~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV------GPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE------CCTTCEEEEEEECTTSSEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe------CCCCccccCCEECCCCCEEE
Confidence            3568899999999999999 5653            259999998899998873      2234568999999998 577


Q ss_pred             EEeC
Q psy4774          75 WSDS   78 (120)
Q Consensus        75 ~TDs   78 (120)
                      |+-.
T Consensus       547 V~vQ  550 (592)
T 4a9v_A          547 VGIQ  550 (592)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.84  E-value=0.0003  Score=50.92  Aligned_cols=70  Identities=14%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             CCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccc--cCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTE--IDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~--~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ....|.+++++++|+ ||++... ..|..+|.++++++.+......  ....+....+.++++++|. ||++...
T Consensus       219 ~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          219 TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence            346789999999997 7887664 3488899988887555332111  2233444458899999985 8888875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.79  E-value=0.00018  Score=52.81  Aligned_cols=65  Identities=17%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECC-CCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~-~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      ..|.+++++++|++|+++...+ |..++.+ +|++..+...    ....-..|+.++++++|. +|+++...
T Consensus       141 ~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~----~~~~g~~p~~~~~spdg~~l~v~~~~~  208 (347)
T 3hfq_A          141 SHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL----TMEAGFGPRHLVFSPDGQYAFLAGELS  208 (347)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE----EcCCCCCCceEEECCCCCEEEEEeCCC
Confidence            4577899999999999988755 6666655 6776655321    111223578999999997 99988754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.79  E-value=0.00017  Score=52.41  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=47.8

Q ss_pred             CCCccceEECCCCc-EEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...|.+++++++|+ ||+++....|+.+|.++++.......   ....+...+++++++++|+ +|+++..
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL---LDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC---CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc---CCCCCCcccceEEECCCCCEEEEEeCC
Confidence            34599999999985 77776655699999988876544321   1112445678999999986 8999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.78  E-value=8e-05  Score=55.41  Aligned_cols=63  Identities=17%  Similarity=0.119  Sum_probs=44.2

Q ss_pred             CccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+.||+.| .++|||++....|..+|+++.++..-...  ...+.++..||.+.+. +|.||++...
T Consensus       108 ~g~glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~V--g~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          108 DGWGLATD-GKILYGSDGTSILYEIDPHTFKLIKKHNV--KYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             SCCEEEEC-SSSEEEECSSSEEEEECTTTCCEEEEEEC--EETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CeEEEEEC-CCEEEEECCCCeEEEEECCCCcEEEEEEE--CCCCcccccceeEEEE-CCEEEEecCC
Confidence            34445554 24899998656699999988765433321  2245678889999988 7899999864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.78  E-value=2.6e-05  Score=59.39  Aligned_cols=67  Identities=10%  Similarity=0.019  Sum_probs=47.4

Q ss_pred             CCCccceEECCCCc-EEEEECCCCEEEEECCCCcEE-EEeccccccCCCCCcCCCceEEcC----CCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTE-QLISMDTEIDGAKPQIPNSVTVDS----DGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~-~~~~~~~~~~g~~~~~pndl~v~~----~G~iy~TDs~   79 (120)
                      ...|.+|+++++|+ |||++....|++++++ |+.. ++.... ...-.....+++|+++|    +|.||++++.
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~   89 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE   89 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence            57899999999999 9999986569999974 6543 233210 11111234578999999    5899999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.71  E-value=0.00016  Score=57.00  Aligned_cols=65  Identities=11%  Similarity=-0.054  Sum_probs=46.9

Q ss_pred             cCCCCccceEECCCC-cEEEEECC----------CCEEEEECCCCcEEEEeccccccC-CCC---CcCCCceEEcCCC-C
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEID-GAK---PQIPNSVTVDSDG-M   72 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~~----------~gi~~vd~~~g~~~~~~~~~~~~~-g~~---~~~pndl~v~~~G-~   72 (120)
                      +.+..| ||++++|| .|||++..          ..|..||..++++..-.    ... ..+   ...|.++++++|| .
T Consensus       116 ~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I----~v~g~~r~~~g~~P~~~~~spDGk~  190 (426)
T 3c75_H          116 DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADI----ELPDAPRFLVGTYQWMNALTPDNKN  190 (426)
T ss_dssp             EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE----EETTCCCCCBSCCGGGSEECTTSSE
T ss_pred             ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEE----ECCCccccccCCCcceEEEcCCCCE
Confidence            345679 99999999 79999752          34999999888754322    122 112   2568999999998 6


Q ss_pred             EEEEeC
Q psy4774          73 VYWSDS   78 (120)
Q Consensus        73 iy~TDs   78 (120)
                      +|+++.
T Consensus       191 lyV~n~  196 (426)
T 3c75_H          191 LLFYQF  196 (426)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.70  E-value=0.00042  Score=51.17  Aligned_cols=62  Identities=13%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CCccceEECCCCc-EEEEECC-CC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          12 GRPLGMKFDKNGA-LHVADAY-FG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~-l~V~d~~-~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ..|.+++++++|+ ||+++.. .+   |+.+++++|+.+.+...    ..  -..|.+++++++|. ||+++..
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----~~--g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ----LT--GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE----EC--SSCCCEEEECTTSCEEEEEETT
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe----cC--CCCCceEEECCCCCEEEEEECC
Confidence            3467999999996 7788765 44   55566667887766532    11  24688999999996 8888864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.69  E-value=0.00017  Score=53.70  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.+.|++.|. +.||++|....|..+|+++.++..-...  ..+|.++..+|.+... +|.||+....
T Consensus       127 ~eG~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V--~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          127 GEGWGLTHND-QYLIMSDGTPVLRFLDPESLTPVRTITV--TAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             SCCCCEEECS-SCEEECCSSSEEEEECTTTCSEEEEEEC--EETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CCceEEecCC-CEEEEECCCCeEEEEcCCCCeEEEEEEe--ccCCccccccceeEEE-CCEEEEEEcc
Confidence            4556777763 5899998656699999988765433321  2356788888888877 7899988764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.69  E-value=0.00042  Score=50.18  Aligned_cols=63  Identities=22%  Similarity=0.372  Sum_probs=45.7

Q ss_pred             CCCccceEECCCCc-EEEEECCCC-EEEEECCCCcE-EEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~~g~~-~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...|.+++++++|+ ||++....+ |..+|.++++. ..+..    ...  -..|.+++++++|. ||++...
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~----~~~--~~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA----VGT--NNLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE----EEC--SSCCCCEEECTTSSEEEEECSS
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee----ccC--CCCCceEEECCCCCEEEEEEcC
Confidence            46799999999996 889887644 88889887774 11211    111  14678999999997 8888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.68  E-value=0.00039  Score=51.37  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=48.0

Q ss_pred             CCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ....|.+++|+++|+ ||+++.. ..|..++.++|+++.+...  ......+..|+++++++||. ||+++..
T Consensus       209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~--~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV--AADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE--ESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE--ecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            356788999999996 7888855 4477777667776655432  11122345678999999996 8898876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.65  E-value=0.00017  Score=52.97  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             CCCCccceEECCCCcEEEEECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ....|.+++++++|+||+++..   ..|+.++.++|+.+.+...  ..   ....|+.++++++|. ||+++..
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~--~~---~~~~p~~~a~spdg~~l~~~~~~  106 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTV--VA---PGTPPAYVAVDEARQLVYSANYH  106 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEE--EE---ESCCCSEEEEETTTTEEEEEETT
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeee--ec---CCCCCEEEEECCCCCEEEEEeCC
Confidence            3578999999999999988753   3487888777776666431  11   234589999999997 8888753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.65  E-value=0.00022  Score=53.33  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=47.8

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+.+.||+.|. +.||++|....|..+|+++.++..-...  ...+.++..+|.|... +|.||++...
T Consensus       135 ~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V--~~~g~~v~~lNeLe~~-dG~lyanvw~  199 (268)
T 3nok_A          135 SGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQV--KLRGQPVELINELECA-NGVIYANIWH  199 (268)
T ss_dssp             SSCCCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEEC--EETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CCceeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEe--CCCCcccccccccEEe-CCEEEEEECC
Confidence            34567888774 4899998656699999998775433321  2356788888999988 7899998865

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.62  E-value=0.0004  Score=54.18  Aligned_cols=80  Identities=14%  Similarity=0.203  Sum_probs=57.7

Q ss_pred             CccceEEC-CCCcEEEEECC-CCEEEEECCC-----CcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccc
Q psy4774          13 RPLGMKFD-KNGALHVADAY-FGLYKVNVTT-----GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLY   85 (120)
Q Consensus        13 ~P~Gl~~d-~~G~l~V~d~~-~gi~~vd~~~-----g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~   85 (120)
                      ...|+++| .+|.||+++.. +.|.+.++++     +..++++.     +. ++.+|+++.++.+|.|||+-++  ++. 
T Consensus       276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-----d~-~l~~pd~~~i~~~g~Lwv~sn~--l~~-  346 (381)
T 3q6k_A          276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-----SS-RFVFGTDISVDSKGGLWFMSNG--FPP-  346 (381)
T ss_dssp             CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-----CT-TCCSEEEEEECTTSCEEEEECS--CCS-
T ss_pred             CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-----CC-CccccCeEEECCCCeEEEEECc--chH-
Confidence            34578897 78999999987 5699999864     35577763     33 8999999999999999999886  221 


Q ss_pred             cceec---ceecCCceEEEE
Q psy4774          86 DGLFD---GLTSGSGSFIKI  102 (120)
Q Consensus        86 ~~~~~---~~~~~~G~l~~~  102 (120)
                       ++..   .....+=||+|.
T Consensus       347 -~~~g~l~d~~~~nfrI~r~  365 (381)
T 3q6k_A          347 -IRKSEKFKYDFPRYRLMRI  365 (381)
T ss_dssp             -STTGGGCCCSSCSEEEEEE
T ss_pred             -hhcCCcCCCCcCCEEEEEe
Confidence             2221   123455677776

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.52  E-value=9e-05  Score=54.40  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=39.7

Q ss_pred             CccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEE
Q psy4774          13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS   76 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~T   76 (120)
                      .-.-|+|+|+|.||++ ....++++++.+++-..++...+.+...-.+.-..+.+|++|.||..
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe
Confidence            3457999999999999 32349999986633222222111111001222468999999999988

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.49  E-value=0.00061  Score=50.11  Aligned_cols=65  Identities=17%  Similarity=0.078  Sum_probs=47.5

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+.+.||+.| .++||++|....|..+|+++.++..-...  ..++.++..+|.+... +|.||+....
T Consensus       104 ~~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V--~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X          104 PGEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV--TAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             SSCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC--EETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CCCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE--ccCCcccccceeeEEe-CCEEEEEECC
Confidence            3566788776 35899999766699999988765433321  2356788888988877 7899988864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.00068  Score=55.88  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....|+.|++|+|||+....||+++++++++.+.+..    ..+.+-+..+.|..|++|+||++-..
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~----~~~l~~~~i~~i~~d~~g~lWi~T~~  558 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQ----YEGFCSNTINQIYRSSKGQMWLATGE  558 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECT----TTTCSCSCEEEEEECTTSCEEEEETT
T ss_pred             ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccC----CCCCCCCeeEEEEECCCCCEEEEECC
Confidence            45678999999999999877899999998777766642    23444455678999999999998654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.42  E-value=0.00088  Score=52.27  Aligned_cols=69  Identities=16%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             CCCccceEECCCCcEEEEECC-------------CC---EEEEECCCC--cEEEEeccccccCCCCCcCCCceEEc-C--
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-------------FG---LYKVNVTTG--QTEQLISMDTEIDGAKPQIPNSVTVD-S--   69 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-------------~g---i~~vd~~~g--~~~~~~~~~~~~~g~~~~~pndl~v~-~--   69 (120)
                      .-...++.+|+.|+|||.|.+             .+   |+.+|.+++  ++........+.- .+-.+.|+|+|| .  
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~-~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLV-EKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGC-CCGGGEEEEEEEESCT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhc-ccCCccceEEEecccC
Confidence            345779999999999999965             12   889999988  6543332211111 133567999999 2  


Q ss_pred             -----CCCEEEEeCCC
Q psy4774          70 -----DGMVYWSDSST   80 (120)
Q Consensus        70 -----~G~iy~TDs~~   80 (120)
                           ++.+|+||+..
T Consensus       165 ~~~c~~~~aYItD~~~  180 (381)
T 3q6k_A          165 KGDCSETFVYITNFLR  180 (381)
T ss_dssp             TTTSCSEEEEEEETTT
T ss_pred             CCCCCccEEEEEcCCC
Confidence                 46899999963

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.40  E-value=0.0017  Score=46.94  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....++++++|+||++....+|++++++ |+...-..     .+.  ..++.++++++|+||++...
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~~~~~~-----~~~--~~~~~~~~~~~g~l~v~t~~  274 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINPD-GTEKWRFK-----TGK--RIESSPVIGNTDTIYFGSYD  274 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECTT-SCEEEEEE-----CSS--CCCSCCEECTTSCEEEECTT
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECCC-CCEeEEee-----CCC--CccccceEcCCCeEEEecCC
Confidence            44678999999999999877789999874 54322211     111  23456788888999988775

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.38  E-value=0.00054  Score=52.87  Aligned_cols=65  Identities=8%  Similarity=-0.137  Sum_probs=47.3

Q ss_pred             cCCCCccceEECCCC-cEEEEECC----------CCEEEEECCCCcEEEEeccccccC-CCC---CcCCCceEEcCCC-C
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEID-GAK---PQIPNSVTVDSDG-M   72 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~~----------~gi~~vd~~~g~~~~~~~~~~~~~-g~~---~~~pndl~v~~~G-~   72 (120)
                      +.+..| |++++++| .+|||+..          .-|..||+.++++..-.    ... +.+   ...|..+++++|| .
T Consensus        63 ~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I----~v~~~~~~~~g~~P~~ia~SpDGk~  137 (368)
T 1mda_H           63 LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI----ELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE----EETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE----ECCCccccccCCCcceEEEcCCCCE
Confidence            345679 99999998 89999741          23999999888754332    122 112   2579999999998 7


Q ss_pred             EEEEeC
Q psy4774          73 VYWSDS   78 (120)
Q Consensus        73 iy~TDs   78 (120)
                      +|+++.
T Consensus       138 lyVan~  143 (368)
T 1mda_H          138 LLFFLF  143 (368)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            999975

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.35  E-value=0.00053  Score=51.01  Aligned_cols=67  Identities=9%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             CccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEecccccc-----CCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          13 RPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEI-----DGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~-----~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      .++.|.+. +|+||+.... ..|.+||+++|++.-..+...-.     .......||+||++++ .++|+|.-.+
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            34567776 7899988754 56999999999987666531100     1123457899999997 5899998874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.34  E-value=0.0023  Score=46.78  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=45.3

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ..|.+++++++|+++|++...+ |+.+|++ |+..--..    ..    ..|.++.+.++|+++++++..
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~----~~----~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK----LS----GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE----CS----SCCCEEEECTTSCEEEECBTT
T ss_pred             ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE----CC----CCccceeEcCCCCEEEEeCCC
Confidence            3578899999999999988755 8889997 76432221    11    346789999999999998863

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.34  E-value=0.0014  Score=54.09  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             CccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....|..|++|+|||+... ||+++++++++.+.+.    ..+|-+-+..+.++.|++|+|||+-..
T Consensus       544 ~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~----~~~gl~~~~i~~i~~d~~g~lWi~t~~  605 (795)
T 4a2l_A          544 FTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYN----TTNGLPNNVVYGILEDSFGRLWLSTNR  605 (795)
T ss_dssp             CEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEEC----GGGTCSCSCEEEEEECTTSCEEEEETT
T ss_pred             eeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeC----CCCCCchhheEEEEECCCCCEEEEcCC
Confidence            4457899999999999775 9999999877766653    334545455678999999999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.29  E-value=0.0019  Score=46.64  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=42.4

Q ss_pred             ccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      +.|+++.+++.+||+.... .|..+|.++++......    . + ....|+.++++++|. +|++...
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----~-~-~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----M-P-DKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE----C-S-SCCSSCEEEECTTSSEEEEEETT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEe----c-C-CCCCCceeEECCCCCEEEEEeCC
Confidence            3578889999999987664 49999998887543332    1 1 112478999999996 8888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.28  E-value=0.0029  Score=48.28  Aligned_cols=64  Identities=8%  Similarity=-0.094  Sum_probs=43.9

Q ss_pred             CCCCccceEECCCC-cEEEEECC----------CCEEEEECCCCcEEEEeccccccC-CCC---CcCCCceEEcCCC-CE
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEID-GAK---PQIPNSVTVDSDG-MV   73 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~----------~gi~~vd~~~g~~~~~~~~~~~~~-g~~---~~~pndl~v~~~G-~i   73 (120)
                      .+..| +|++.+|| .|||++..          ..|..+|++++++..-..    .. ..+   ...|.++++++|| .|
T Consensus        65 ~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~----~~~~~~~~~g~~p~~~~~spDG~~l  139 (373)
T 2mad_H           65 GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE----LPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             CCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE----CCCccccccCCCccceEECCCCCEE
Confidence            34568 99999999 68999742          237889987765432221    11 111   2468999999998 69


Q ss_pred             EEEeC
Q psy4774          74 YWSDS   78 (120)
Q Consensus        74 y~TDs   78 (120)
                      |++..
T Consensus       140 ~v~n~  144 (373)
T 2mad_H          140 LFFQF  144 (373)
T ss_pred             EEEec
Confidence            99874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.25  E-value=0.0039  Score=44.69  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=44.5

Q ss_pred             CCCCccceEECCCCc-EEEEECC-CCEEE--EECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAY-FGLYK--VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~--vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ..+.|.+++++++|+ ||++... ..|..  +++++++.+.+...    ....  .|..++++++|. ||+++..
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~s~dg~~l~~~~~~  104 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----ALPG--SLTHISTDHQGQFVFVGSYN  104 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----ECSS--CCSEEEECTTSSEEEEEETT
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc----ccCC--CCcEEEEcCCCCEEEEEecC
Confidence            346799999999996 7877765 33444  45447777666432    1111  689999999997 8888763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.24  E-value=0.0034  Score=44.87  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=44.2

Q ss_pred             CccceEECCCC-cEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEe
Q psy4774          13 RPLGMKFDKNG-ALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSD   77 (120)
Q Consensus        13 ~P~Gl~~d~~G-~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TD   77 (120)
                      .|.+++++++| .+|++.... .|..+|.++++.......  ...+..-..|.+++++++| .||+++
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL--STPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC--CBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc--CCcccccccccceEECCCCCEEEEEe
Confidence            69999999999 578887764 499999888876443321  1111011257899999998 688886

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.24  E-value=0.0007  Score=50.55  Aligned_cols=67  Identities=12%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             CccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccc---c---CCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          13 RPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTE---I---DGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~---~---~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      .++.|.+. +|+||+.... ..|.+||+++|++.-..+...-   .   ...+..-+|+||.+++ +++|+|.-.+
T Consensus       182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W  256 (268)
T 3nok_A          182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW  256 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred             cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence            45677777 7899988754 5599999999998766653210   0   1113457899999996 6899998874

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.20  E-value=0.00079  Score=53.49  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             CCccceEECCC----CcEEEEECC-------------CCEEEEECCCC--------cEEEEeccccccCCCCCcCCCceE
Q psy4774          12 GRPLGMKFDKN----GALHVADAY-------------FGLYKVNVTTG--------QTEQLISMDTEIDGAKPQIPNSVT   66 (120)
Q Consensus        12 g~P~Gl~~d~~----G~l~V~d~~-------------~gi~~vd~~~g--------~~~~~~~~~~~~~g~~~~~pndl~   66 (120)
                      +.++||+++|+    +.|||+-..             ..|+|+....+        +.++|+..  . ....-+....|+
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~--~-~~~~~H~g~~l~  145 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEV--A-ELHRKHLGGQLL  145 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEE--E-ESSSSSCEEEEE
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEc--C-CCCCcccCCcEe
Confidence            56789999996    899998431             24777654321        23555542  1 122446678999


Q ss_pred             EcCCCCEEEEeCCCCcccccce-ecceecCCceEEEEcCCC
Q psy4774          67 VDSDGMVYWSDSSTKYKLYDGL-FDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        67 v~~~G~iy~TDs~~~~~~~~~~-~~~~~~~~G~l~~~d~~~  106 (120)
                      |++||.||||-........... ...+....|.|+|+|+++
T Consensus       146 fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          146 FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDT  186 (463)
T ss_dssp             ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCC
T ss_pred             ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCC
Confidence            9999999999654321100000 011245679999999886

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.18  E-value=0.0023  Score=47.74  Aligned_cols=66  Identities=23%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             CCCccceEECCCCc-EEEEECC-CCEEEEECC-CCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAY-FGLYKVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~-~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      ...|.+++++++|+ ||+++.. ..|..++.+ +|+++.+...  ... ..-..|..++++++| .||+++..
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~--~~~-~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV--DAP-DPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE--ECS-STTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE--ecC-CCCCCCCEeEECCCCCEEEEEECC
Confidence            46799999999995 7888865 447777776 7877654321  111 012458899999999 58888763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.0018  Score=53.38  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=49.6

Q ss_pred             CccceEECCCCcEEEEECCCCE-EEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFGL-YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~gi-~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ....|..|++|+||++.. .|+ .++|+++++.+.+.    ..+|-+-+..+.++.|++|+|||+-...
T Consensus       540 ~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~----~~~gl~~~~i~~i~~d~~g~lW~~t~~G  603 (781)
T 3v9f_A          540 TINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQ----RKEGLPNTHIRAISEDKNGNIWASTNTG  603 (781)
T ss_dssp             CEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEEC----GGGTCSCCCCCEEEECSSSCEEEECSSC
T ss_pred             eeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEcc----ccCCCCCceEEEEEECCCCCEEEEcCCc
Confidence            345789999999999977 788 99999888766663    3355555567899999999999997643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.07  E-value=0.0014  Score=48.15  Aligned_cols=67  Identities=10%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             CccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccC------CCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          13 RPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEID------GAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~------g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      .++.|... +|+||+.... ..|.+||+++|++.-......-.+      .....-+|+||.+++ +++|+|.-.+
T Consensus       151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          151 NLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             cceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            44566665 7899988754 569999999999876665321111      113457899999996 6899998874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.04  E-value=0.0042  Score=48.41  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=45.3

Q ss_pred             cCCCCccceEECCCC-cEEEEECC----------CCEEEEECCCCcEEEEeccccccCCCC---CcCCCceEEcCCC-CE
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEIDGAK---PQIPNSVTVDSDG-MV   73 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~~----------~gi~~vd~~~g~~~~~~~~~~~~~g~~---~~~pndl~v~~~G-~i   73 (120)
                      +.+..| +++++++| .|||++..          ..|..+|.+++++.--...   ..|.+   -..|..+++++|| .+
T Consensus        76 ~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v---~~g~r~~~g~~P~~~a~spDGk~l  151 (386)
T 3sjl_D           76 DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL---PDAPRFLVGTYPWMTSLTPDGKTL  151 (386)
T ss_dssp             EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE---TTCCCCCBSCCGGGEEECTTSSEE
T ss_pred             ECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC---CCccccccCCCCceEEEcCCCCEE
Confidence            345668 49999999 68999741          2388899988775322211   11122   2468999999998 59


Q ss_pred             EEEeC
Q psy4774          74 YWSDS   78 (120)
Q Consensus        74 y~TDs   78 (120)
                      |+++.
T Consensus       152 yVan~  156 (386)
T 3sjl_D          152 LFYQF  156 (386)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99975

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.02  E-value=0.0021  Score=48.44  Aligned_cols=63  Identities=11%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             CCCccceEECCCC-cEEEEECC----------CCEEEEECCCCcEEEEeccccccCCCC---CcCCCceEEcCCC-CEEE
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAY----------FGLYKVNVTTGQTEQLISMDTEIDGAK---PQIPNSVTVDSDG-MVYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~----------~gi~~vd~~~g~~~~~~~~~~~~~g~~---~~~pndl~v~~~G-~iy~   75 (120)
                      +..| +++++++| .|||++..          ..|..+|.+++++..-..    .....   -..|.+++++++| .||+
T Consensus        50 g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~----~~~~~~~~g~~p~~i~~spdg~~l~v  124 (361)
T 2oiz_A           50 AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS----LPPKRVQGLNYDGLFRQTTDGKFIVL  124 (361)
T ss_dssp             CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE----ECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred             CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE----cCccccccCCCcceEEECCCCCEEEE
Confidence            4568 99999999 68998741          128889987776532221    11111   2568999999998 5998


Q ss_pred             EeC
Q psy4774          76 SDS   78 (120)
Q Consensus        76 TDs   78 (120)
                      ++.
T Consensus       125 ~n~  127 (361)
T 2oiz_A          125 QNA  127 (361)
T ss_dssp             EEE
T ss_pred             ECC
Confidence            874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.95  E-value=0.0085  Score=45.69  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             Cccc---eEECCCC-cEEEEEC----------CCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC--EEEE
Q psy4774          13 RPLG---MKFDKNG-ALHVADA----------YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM--VYWS   76 (120)
Q Consensus        13 ~P~G---l~~d~~G-~l~V~d~----------~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~--iy~T   76 (120)
                      +|.|   ++++++| +|||+..          ...|+.||.+++++..-..    ..+    .|+++++++||.  +|++
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~----~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGH----DVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCC----CcCeEEECCCCCeEEEEE
Confidence            5777   8999986 8899743          1349999998876532221    122    489999999997  5554


Q ss_pred             eCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          77 DSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        77 Ds~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      ...                .+.|..||..+
T Consensus       337 ~~~----------------~~~V~ViD~~t  350 (373)
T 2mad_H          337 SAG----------------TEVLHIYDAGA  350 (373)
T ss_pred             cCC----------------CCeEEEEECCC
Confidence            432                35677777665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.93  E-value=0.0096  Score=42.60  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=40.6

Q ss_pred             CccceEECCCC-cEEEEECCCC-EEEEECC--CCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          13 RPLGMKFDKNG-ALHVADAYFG-LYKVNVT--TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~--~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      .|.+++++++| .||++....+ |..++.+  +++.+.+...    ...  ..|.+++++++|+ ||+++..
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~--~~~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ----PTE--TQPRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE----ECS--SSCCCEEECTTSSEEEEECTT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee----cCC--CccceEEECCCCCEEEEecCC
Confidence            45579999999 5677775544 6666654  5566555421    111  1288999999996 8888754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.80  E-value=0.013  Score=42.06  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             ccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          14 PLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      ...+.+|++|+|||+.  .+|+++|+ +|+...-..    .   +-.....++++++|+||++..
T Consensus       179 ~~~~~~d~~g~l~v~t--~~l~~~d~-~g~~~~~~~----~---~~~~~~~~~~~~~g~l~v~t~  233 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS--DKVYAINP-DGTEKWNFY----A---GYWTVTRPAISEDGTIYVTSL  233 (330)
T ss_dssp             CSCCEECTTCCEEEES--SSEEEECT-TSCEEEEEC----C---SSCCCSCCEECTTSCEEEEET
T ss_pred             eeeeEEcCCCEEEEEe--CEEEEECC-CCcEEEEEc----c---CCcceeceEECCCCeEEEEcC
Confidence            3445566666666655  55666663 443221111    0   112345666666666666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.72  E-value=0.018  Score=41.04  Aligned_cols=57  Identities=12%  Similarity=0.129  Sum_probs=42.1

Q ss_pred             CccceEECCCC-cEEEEE------------CCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          13 RPLGMKFDKNG-ALHVAD------------AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        13 ~P~Gl~~d~~G-~l~V~d------------~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      .|.+++++++| .||+++            ....|..+|.++++......    . +   ..|++++++++|. ||+++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~-~---~~~~~~~~s~dg~~l~~~~  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----A-P---RQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----C-C---SSCCCEEECTTSSCEEEES
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----C-C---CCcceeEECCCCCEEEEeC
Confidence            78999999999 678885            23558999988776544332    1 2   2478999999986 88884

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.62  E-value=0.0098  Score=49.04  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             CccceEECCCCc-EEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....|+.|++|+ |||+....||.++++++++.+.+..   .....+-+....+..|++|+||+.-..
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~---~~~~l~~~~v~~i~~d~~g~lwigt~~  471 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ---RNSQLVNENVYAILPDGEGNLWLGTLS  471 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT---TTSCCSCSCEEEEEECSSSCEEEEESS
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec---CCCCcCCCeeEEEEECCCCCEEEEecC
Confidence            345788899999 9999877899999998888777642   111122344568889999999998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.56  E-value=0.024  Score=41.67  Aligned_cols=61  Identities=18%  Similarity=0.377  Sum_probs=44.4

Q ss_pred             CCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...+.++++.++|+ ||++... ..|..+|.++++......     .+   ..++.++++++|. ||++.+.
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----~~---~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----TG---KSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----CS---SSEEEEEECTTSSEEEEEETT
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----CC---CCcceEEECCCCCEEEEEeCC
Confidence            34788999999996 6777765 448889998887654432     11   1368999999986 7788774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.55  E-value=0.017  Score=42.50  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=43.7

Q ss_pred             CCccceEECCCCc-EEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          12 GRPLGMKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~-l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ..|.++++.++|+ ||++.... .|..+|.++++......    ...    .++.++++++|. ||++.+.
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----~~~----~v~~~~~spdg~~l~~~~~~   94 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----AGS----SPQGVAVSPDGKQVYVTNMA   94 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----CSS----SEEEEEECTTSSEEEEEETT
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----CCC----CccceEECCCCCEEEEEECC
Confidence            4588999999996 56776554 48888988887654432    111    578999999986 8888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.47  E-value=0.011  Score=48.45  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             ccceEECCCCcEEEE-ECCCCEEEEECCCCcEEEEeccccccCCC-CCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVA-DAYFGLYKVNVTTGQTEQLISMDTEIDGA-KPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~-d~~~gi~~vd~~~g~~~~~~~~~~~~~g~-~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|..|++|+|||+ -...||+++|+++++.+.+..     ++. .-..++.+..|++|+||++-..
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~-----~~~~~~~~~~~i~~d~~g~lWigt~~  536 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFA-----DELTGEKSPNYLLCDEDGLLWVGFHG  536 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECT-----TTSCGGGCEEEEEECTTSCEEEEETT
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecC-----CCcCCCcccceEEECCCCCEEEEecC
Confidence            456899999999993 334789999998887776632     111 1235678999999999998653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.47  E-value=0.021  Score=40.99  Aligned_cols=64  Identities=16%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             CccceEECCCCc-EEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEe
Q psy4774          13 RPLGMKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSD   77 (120)
Q Consensus        13 ~P~Gl~~d~~G~-l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TD   77 (120)
                      .|.++++.++|+ +|++.... .|..+|.++++........ ...+..-..|++++++++| .||++.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~  110 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-SVPGEVGRSMYSFAISPDGKEVYATV  110 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc-cccccccccccceEECCCCCEEEEEc
Confidence            689999999996 78887654 4899999888765433210 0000113458999999998 477777

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.43  E-value=0.0068  Score=45.30  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...|.++++.+++.++++....+ |..+|.++++.......  .........++.++++++|.+|++.+.
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~s~~~  189 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP--EKYKKKLGFVETISIPEHNELWVSQMQ  189 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC--HHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc--ccccccCCceeEEEEcCCCEEEEEECC
Confidence            45688999999888888866544 99999988876654321  000113345678999999999999875

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.37  E-value=0.031  Score=45.87  Aligned_cols=71  Identities=11%  Similarity=0.207  Sum_probs=46.8

Q ss_pred             cCCCCccceEECC-CCcEEEEECC---------------------CC-EEEEECCCC-------cEEEEecccc------
Q psy4774           9 QQCGRPLGMKFDK-NGALHVADAY---------------------FG-LYKVNVTTG-------QTEQLISMDT------   52 (120)
Q Consensus         9 ~~~g~P~Gl~~d~-~G~l~V~d~~---------------------~g-i~~vd~~~g-------~~~~~~~~~~------   52 (120)
                      ....||.|+.+++ +|.+|++-..                     .| |+++.++.+       +++.++....      
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            3457899999997 6899998431                     13 999976533       2333332110      


Q ss_pred             --------ccCCCCCcCCCceEEcCCCCEEEE-eCC
Q psy4774          53 --------EIDGAKPQIPNSVTVDSDGMVYWS-DSS   79 (120)
Q Consensus        53 --------~~~g~~~~~pndl~v~~~G~iy~T-Ds~   79 (120)
                              ..+...|..|+.|+|+++|+|||. |..
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~  496 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGD  496 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCC
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCC
Confidence                    011235889999999999999975 543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.33  E-value=0.0099  Score=48.77  Aligned_cols=62  Identities=19%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             cCCCCccceEECCCCcEEEE-ECC------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EE
Q psy4774           9 QQCGRPLGMKFDKNGALHVA-DAY------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY   74 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~-d~~------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy   74 (120)
                      .....|-+|+|++.|+|||| |..            +.++.+++++|++..|+.   ...+.+   .-+++|++||. ||
T Consensus       473 ~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~---~P~gaE---~TG~~fspDg~tlf  546 (592)
T 3zwu_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCE---VTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE---CCTTCE---EEEEEECTTSSEEE
T ss_pred             CCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe---CCCCcc---CcCeeECCCCCEEE
Confidence            34567999999999999999 432            237888998999998875   223333   35899999985 55


Q ss_pred             EE
Q psy4774          75 WS   76 (120)
Q Consensus        75 ~T   76 (120)
                      |.
T Consensus       547 vn  548 (592)
T 3zwu_A          547 VG  548 (592)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.30  E-value=0.02  Score=45.44  Aligned_cols=85  Identities=19%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             CCccceEECC-------CCcEEEEECCCCEEEEECCCCc----EEEEe-ccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDK-------NGALHVADAYFGLYKVNVTTGQ----TEQLI-SMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~-------~G~l~V~d~~~gi~~vd~~~g~----~~~~~-~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .-|.|++|-.       +|.+++++....|+++..+.+.    .+.+. .............|-+|++++||.|||+|..
T Consensus       276 ~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~  355 (463)
T 2wg3_C          276 GPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSS  355 (463)
T ss_dssp             -CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEES
T ss_pred             ccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEecc
Confidence            4578888843       4678999987558888754321    22221 1000001112335789999999999999975


Q ss_pred             CCcccccceecceecCCceEEEEc-CC
Q psy4774          80 TKYKLYDGLFDGLTSGSGSFIKIG-PN  105 (120)
Q Consensus        80 ~~~~~~~~~~~~~~~~~G~l~~~d-~~  105 (120)
                      ...         .....|+|||+. |.
T Consensus       356 ~~~---------~~~~~G~I~Ri~~p~  373 (463)
T 2wg3_C          356 KSM---------TQTHNGKLYKIVDPK  373 (463)
T ss_dssp             SCG---------GGCSSEEEEEEECTT
T ss_pred             CCc---------ccCCCCcEEEecCcc
Confidence            211         123578999986 44

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.21  E-value=0.025  Score=41.55  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=43.6

Q ss_pred             CCccceEECCCC-cEEEE-ECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNG-ALHVA-DAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~-d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..+.||++++++ .||++ |....|+++|++ |++..-..    ..|  +.-+.+|++.++|.+|+++-.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~----l~g--~~D~EGIa~~~~g~~~vs~E~   89 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP----LDF--VKDLETIEYIGDNQFVISDER   89 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE----CSS--CSSEEEEEECSTTEEEEEETT
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe----cCC--CCChHHeEEeCCCEEEEEECC
Confidence            568899999874 79986 444459999996 76543331    122  345679999999998898754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.19  E-value=0.023  Score=45.42  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             CCCccceEECCCC-cEEEEECCCC-EEEEECC-CCcEEEEeccccccCC----------CC-CcCCCceEEcCCC-CEEE
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYFG-LYKVNVT-TGQTEQLISMDTEIDG----------AK-PQIPNSVTVDSDG-MVYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~-~g~~~~~~~~~~~~~g----------~~-~~~pndl~v~~~G-~iy~   75 (120)
                      .+.|.+|++.+|| .|||++...+ |..+|.. .++.+.+...  ...|          .+ -..|.++++++|| .||+
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I--~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV  397 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV--KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV  397 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE--EeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence            3679999999999 6899987755 6666642 2333333221  1221          11 1369999999998 6999


Q ss_pred             EeCC
Q psy4774          76 SDSS   79 (120)
Q Consensus        76 TDs~   79 (120)
                      |++-
T Consensus       398 aNsl  401 (462)
T 2ece_A          398 TNSL  401 (462)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9974

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.18  E-value=0.011  Score=45.39  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=42.6

Q ss_pred             CCccc---eEECCCC-cEEEEEC---C------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          12 GRPLG---MKFDKNG-ALHVADA---Y------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        12 g~P~G---l~~d~~G-~l~V~d~---~------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      -+|.|   ++++++| ++||+..   .      .++..||.+++++..-..    . |.   .|++|++++||. +|++.
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----v-g~---~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----N-GH---DSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----E-EE---EECEEEECCSSSCEEEEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----C-CC---CcceEEECCCCCEEEEEc
Confidence            46777   8899986 7899754   2      468899998876432221    1 11   489999999995 99988


Q ss_pred             C
Q psy4774          78 S   78 (120)
Q Consensus        78 s   78 (120)
                      .
T Consensus       333 ~  333 (368)
T 1mda_H          333 S  333 (368)
T ss_dssp             E
T ss_pred             c
Confidence            7

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.18  E-value=0.07  Score=36.79  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCC-CcEEEEeccccccCCCCCcCCCceEEcCCCCEEEE
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTT-GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS   76 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~-g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~T   76 (120)
                      +....+++.++|+.+++.....|+.+|.++ ++...+..      +.....++.++++++|...++
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~  101 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT------GFATICNNDHGISPDGALYAI  101 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC------TTCCCBCSCCEECTTSSEEEE
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc------ccccccccceEECCCCCEEEE
Confidence            456789999999877765545699999887 77655532      222235678999999864443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.13  E-value=0.017  Score=44.64  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             cCCCCccceEECCC-CcEEEEECCCCEEEEE--CCCCc-EEEEeccccccCCCCCc-CCCceEEc--CC--CCEEEEeCC
Q psy4774           9 QQCGRPLGMKFDKN-GALHVADAYFGLYKVN--VTTGQ-TEQLISMDTEIDGAKPQ-IPNSVTVD--SD--GMVYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~-G~l~V~d~~~gi~~vd--~~~g~-~~~~~~~~~~~~g~~~~-~pndl~v~--~~--G~iy~TDs~   79 (120)
                      ...+.|.|+++|+. |.|||++...||++++  |+++. .+.+.    ...+..+. -+.+|++.  ++  |.|++|+..
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~----~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVID----RADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEE----EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEE----EecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            34678999999975 7999999989999999  54322 23333    22334444 67899995  44  458888865


Q ss_pred             C
Q psy4774          80 T   80 (120)
Q Consensus        80 ~   80 (120)
                      .
T Consensus       253 ~  253 (355)
T 3amr_A          253 N  253 (355)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.10  E-value=0.01  Score=44.63  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=38.0

Q ss_pred             ccceEECCCC-cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC
Q psy4774          14 PLGMKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM   72 (120)
Q Consensus        14 P~Gl~~d~~G-~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~   72 (120)
                      |.+|+++++| .||++.. ..|..+|.++++++++...  ...|   ..|+.++++|+|+
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~G---~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGAA---EASLQVQFHPVGG  360 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTSC---SSEEEEEECCCSC
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccCC---CCcEEEEecCCCC
Confidence            9999999999 5676665 5699999988844444321  1123   3589999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.03  E-value=0.02  Score=42.54  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=42.0

Q ss_pred             CCCccceEECCCC-cEEEEECCCC---EEEEECCCCcEEE----EeccccccCCCC-----CcCCCceE-EcCCCC-EEE
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQ----LISMDTEIDGAK-----PQIPNSVT-VDSDGM-VYW   75 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~g---i~~vd~~~g~~~~----~~~~~~~~~g~~-----~~~pndl~-v~~~G~-iy~   75 (120)
                      ...|.+++++++| .||+++...+   ++.++.++|+...    +........+..     ...|.+++ +++||. ||+
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            4569999999999 5788876433   4455665677542    221100000100     11578999 999995 888


Q ss_pred             EeCC
Q psy4774          76 SDSS   79 (120)
Q Consensus        76 TDs~   79 (120)
                      ++..
T Consensus       272 ~~~~  275 (365)
T 1jof_A          272 SSRA  275 (365)
T ss_dssp             EEEE
T ss_pred             ECCC
Confidence            8753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.97  E-value=0.065  Score=39.88  Aligned_cols=60  Identities=17%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             CCccceEECCCC-cEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      +.|.+++++++| .||++....+ |..+|.++++......     .   ...++.++++++|. ||++...
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----~---~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-----V---FDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-----C---SSSEEEEEECTTSSEEEEEECC
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-----C---CCCCCeEEEcCCCCEEEEEecC
Confidence            468899999999 5788866644 8888988776544332     1   12467999999986 7777764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.83  E-value=0.011  Score=48.37  Aligned_cols=62  Identities=16%  Similarity=0.161  Sum_probs=41.3

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ..+..+..|++|+||++-. .||.++++++++.+.+.     .++-+-+.+..+..+ +|+|||+-...
T Consensus       517 ~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~-----~~gl~~~~i~~i~~~-~g~lWi~t~~G  578 (758)
T 3ott_A          517 KSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSIS-----FGSFSNNEILSMTCV-KNSIWVSTTNG  578 (758)
T ss_dssp             GCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCC-----CCC---CCEEEEEEE-TTEEEEEESSC
T ss_pred             cccceEEECCCCCEEEEec-CceEEEecCCCceEEec-----ccCCCccceEEEEEC-CCCEEEECCCC
Confidence            3467899999999999864 68999999876654431     134343445667665 79999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.81  E-value=0.023  Score=44.62  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=42.8

Q ss_pred             CCCccceEECCCC-cEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCc----eEEcCCCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pnd----l~v~~~G~iy~TDs   78 (120)
                      +..|.++++++|| .|||++..  ..|..||.+++++.--.    ...+.....|.+    +++.++|.+.+.|.
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I----~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML----DVPDCYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE----ECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE----EcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence            4679999999999 78999753  45999999887753222    122222233444    77778887665555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.38  E-value=0.042  Score=42.70  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             CCCccceEECCCC-cEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCc----eEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pnd----l~v~~~G~iy~TDs~   79 (120)
                      +..|.++++++|| .|||++..  ..|..||.+++++..-.    ...|....+|.+    +++.+||.+.+.+..
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI----~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML----DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE----ECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE----ECCCcceeecCCCceeEEECCCCCEEEEECC
Confidence            4579999999999 68999753  45999999888753222    122322233444    478888877666664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.24  E-value=0.24  Score=39.31  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             CCccceEECCCCcEEEEECCC---CEEEEECCCCcEEEEeccccccCCCCCcC--CCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQI--PNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~---gi~~vd~~~g~~~~~~~~~~~~~g~~~~~--pndl~v~~~G~iy~TDs~   79 (120)
                      ..+..+++.++|+||++....   .|++++.++++.+.+....... ..+.-.  ...+++.++|.++++-+.
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc-cCccccccCceEeEeCCCEEEEEEEc
Confidence            456678999999987764433   4999998788877665311011 111111  357889899988887653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.23  E-value=0.018  Score=42.19  Aligned_cols=61  Identities=21%  Similarity=0.190  Sum_probs=38.1

Q ss_pred             cceEECCCCcEEEEECCCCEEEEECCC-CcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEe
Q psy4774          15 LGMKFDKNGALHVADAYFGLYKVNVTT-GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSD   77 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~gi~~vd~~~-g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TD   77 (120)
                      ..+.||++|.||++.. ..|+|+++.+ +.- .++.....+...-.+...-|.++|+|+||...
T Consensus        91 ~a~~fD~~G~LYav~d-G~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           91 QFLFFDPNGYLYAVSK-DKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SEEEECTTSCEEEEET-TEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eEEEECCCCCEEEeCC-CEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            4689999999999933 3499998743 221 22211111111122334789999999999766

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.99  E-value=0.047  Score=43.57  Aligned_cols=62  Identities=11%  Similarity=0.025  Sum_probs=45.1

Q ss_pred             CCccceEECCCCcEEEEECC-------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .+|.+++..++| |||+..+       .+|+.+|.+++++.--.    +.++.+-.++.|+++.+++++.+|-.
T Consensus       138 s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~----~~~~~~~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          138 SRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW----EIDRGDQYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             EEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC----CSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred             CcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE----ccCCCCccccceEEECCCCCEEEEcc
Confidence            379999999999 9997543       25999999888754333    22344556678999999987666553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.70  E-value=0.28  Score=39.00  Aligned_cols=62  Identities=11%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             CCCccceEECCCCc-EEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCC-CceE-EcCC-CCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIP-NSVT-VDSD-GMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~p-ndl~-v~~~-G~iy~TDs   78 (120)
                      ...|.+++|+++|+ +|++... +.|..+|.++|++.....    ....|  .| .+.. ++++ |.+|+|..
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~----~g~~p--h~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD----VGKTP--HPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSB--CCTTCEEEEETTTEEEEEEEB
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec----cCCCC--CCCCCcccCCCCCccEEEecc
Confidence            46799999999997 6777664 558889999898655442    11111  11 1333 4666 78999875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.62  E-value=0.16  Score=41.01  Aligned_cols=62  Identities=10%  Similarity=-0.021  Sum_probs=43.3

Q ss_pred             CCCCccceEECCCC-cEEEEECCCCEEEEECC--CCcEEEEeccccccCCCCCcCCCceEEc----CCC-CEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAYFGLYKVNVT--TGQTEQLISMDTEIDGAKPQIPNSVTVD----SDG-MVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~~gi~~vd~~--~g~~~~~~~~~~~~~g~~~~~pndl~v~----~~G-~iy~TDs~   79 (120)
                      .+..|.++++.++| .+||++....|..+|..  ++++  +...  . .|   ..|.+++++    +|| .+|+++..
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--v~~i--~-~G---~~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEI--K-IG---SEARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEE--E-CC---SEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--eEEE--e-cC---CCCceeEEccccCCCCCEEEEEEcc
Confidence            34578899999999 57888754569999984  5543  2221  1 12   247899999    588 68888764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.47  E-value=0.96  Score=33.41  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.|+|+.+++-...+ |...|..+++.....................++++++|.+.++-+.
T Consensus       250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence            4567899999999888766655 6667887776544332110111123345678999999988877664

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.13  E-value=0.27  Score=36.52  Aligned_cols=60  Identities=18%  Similarity=0.145  Sum_probs=41.8

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      -..++|.|+|+++++-...+ |...|.++++...-..   +.+.   ...+.|+|+|||...+|-|.
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---~gH~---~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---QAHS---FAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---TSSS---SCEEEEEECTTSCEEEEEET
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---Cccc---CCEEEEEECCCCCEEEEEeC
Confidence            35789999999888755544 7777887776432111   1122   23579999999999999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.06  E-value=0.53  Score=37.54  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=38.7

Q ss_pred             ccceEECCCCc-EEEEECCC-----CEEEEECCCC-cEEEEeccccccCCCCCcCCCceEEcC--CCCEEEEeC
Q psy4774          14 PLGMKFDKNGA-LHVADAYF-----GLYKVNVTTG-QTEQLISMDTEIDGAKPQIPNSVTVDS--DGMVYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~-l~V~d~~~-----gi~~vd~~~g-~~~~~~~~~~~~~g~~~~~pndl~v~~--~G~iy~TDs   78 (120)
                      +..+++.++|+ |+++....     .|+.+|.++| +...+..   ..........+.+++++  +|.++++-+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~sp~~dg~~l~~~~  330 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV---ETDKHYVEPLHPLTFLPGSNNQFIWQSR  330 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE---EECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE---ccCCCeECccCCceeecCCCCEEEEEEc
Confidence            45799999997 55543222     4888999888 6665543   11221222347889999  887555443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=93.97  E-value=0.24  Score=39.43  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=41.4

Q ss_pred             CccceEECCCC-cEEEEECCCCEEEEEC--CCCcEEEEeccccccCCCCCcCCCceEEcC----CCC-EEEEeC
Q psy4774          13 RPLGMKFDKNG-ALHVADAYFGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDS----DGM-VYWSDS   78 (120)
Q Consensus        13 ~P~Gl~~d~~G-~l~V~d~~~gi~~vd~--~~g~~~~~~~~~~~~~g~~~~~pndl~v~~----~G~-iy~TDs   78 (120)
                      .|.+++++++| .||+++....|..+|.  +++++..-+    . .|   ..|..+++++    +|. +|+++.
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----~-~g---~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----K-IG---IEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE----E-CC---SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE----e-cC---CCcceEEeCCCcCCCCCEEEEEEc
Confidence            47899999999 5688876655888998  666543222    1 12   2478999999    984 788764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.60  E-value=0.81  Score=34.61  Aligned_cols=59  Identities=14%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             CCccceEECCCCcEEE-EECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          12 GRPLGMKFDKNGALHV-ADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V-~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      +....+++.|+|+.++ +...   ..|+.+|.++|+...+..    ..+    ..+.++++|||. |+|+-+
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~----~~~----~~~~~~~spdg~~la~~~~  242 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPR----HNGAPAFSPDGSKLAFALS  242 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----CSS----CEEEEEECTTSSEEEEEEC
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec----CCC----cccCEEEcCCCCEEEEEEe
Confidence            3456799999996544 3332   248889998888776643    111    346788888886 666654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.52  E-value=0.15  Score=37.93  Aligned_cols=53  Identities=13%  Similarity=0.141  Sum_probs=34.3

Q ss_pred             eEECCCC-cEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          17 MKFDKNG-ALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        17 l~~d~~G-~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ++++++| .||.++.. ..|++++.+++..+++..      + +..    ..+.|+ +.||+||...
T Consensus       150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~------~-~~~----~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD------C-NCY----KPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC------S-CEE----EEEEEETTEEEEEEGGG
T ss_pred             eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC------C-Ccc----ceeeecCCEEEEEEcCC
Confidence            4556665 78888764 459999987776666642      2 111    235564 6899998753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.96  E-value=1.2  Score=33.69  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CCccceEECCCCcEEE-EECC---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          12 GRPLGMKFDKNGALHV-ADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V-~d~~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      +....+++.|+|+.++ +...   ..|+.+|.++++...+..     ..   .....++++|+|. |+++-
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----~~---~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----GR---SNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-----CS---SCEEEEEECTTSSEEEEEE
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-----CC---CcccceEECCCCCEEEEEE
Confidence            3456899999997444 4332   239999998888765532     11   2345788888886 55554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.79  E-value=0.076  Score=43.64  Aligned_cols=65  Identities=20%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             cCCCCccceEECCCCc-EEEEECC-CCEEEEECCCCcE----------EEEeccccccCCCCCcCCCceEEcCCCCEEEE
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAY-FGLYKVNVTTGQT----------EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS   76 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~-~gi~~vd~~~g~~----------~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~T   76 (120)
                      +.+..|.|+.+.|||+ +||++.. ..|..+|.++.+.          .+++..   .-|   ..|..++|+++|++|+|
T Consensus       274 pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v---~vG---~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          274 PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP---ELG---LGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC---BCC---SCEEEEEECTTSEEEEE
T ss_pred             ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc---CCC---CCcceEEECCCCeEEEE
Confidence            3456899999999995 6777765 4588888753310          122211   112   34789999999999998


Q ss_pred             eCC
Q psy4774          77 DSS   79 (120)
Q Consensus        77 Ds~   79 (120)
                      ...
T Consensus       348 ~~l  350 (595)
T 1fwx_A          348 LFL  350 (595)
T ss_dssp             ETT
T ss_pred             Eec
Confidence            764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.75  E-value=0.25  Score=38.68  Aligned_cols=53  Identities=21%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             cceEECCCCcEEEE---ECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEE
Q psy4774          15 LGMKFDKNGALHVA---DAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYW   75 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~---d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~   75 (120)
                      ..++++|||+.+++   +..  ..|+.+|.++|+...+..    ..+    ..+.++++|||...+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~----~~~----~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS----GEG----SFSSASISPGMKVTA  210 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC----SSC----EEEEEEECTTSCEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec----CCC----ccccceECCCCCEEE
Confidence            67889999987663   211  238999988888776642    111    237899999997544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.51  E-value=1.2  Score=30.36  Aligned_cols=57  Identities=14%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             ccceEECCCCcEEE-EECCC---CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          14 PLGMKFDKNGALHV-ADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V-~d~~~---gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...+++.++|+.++ +....   .|+.++.++++...+..     .   ...++.++++++|. |+++-.
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~---~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-----G---EGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-----S---SSCEEEEEECTTSSEEEEEEC
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-----C---CCccccceECCCCCEEEEEec
Confidence            56789999996443 33222   48888887777655532     1   12357899999986 565543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=92.38  E-value=0.59  Score=37.27  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             CCccceEECCCCcEEE-EEC--------------------------------C-CCEEEEECCCCcEEEEeccccccCCC
Q psy4774          12 GRPLGMKFDKNGALHV-ADA--------------------------------Y-FGLYKVNVTTGQTEQLISMDTEIDGA   57 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V-~d~--------------------------------~-~gi~~vd~~~g~~~~~~~~~~~~~g~   57 (120)
                      +++.++++.|||+.++ +..                                . ..|+.+|.++++...+..     ...
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-----~~~  255 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-----GEP  255 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-----CSC
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-----CCC
Confidence            4578999999996544 330                                1 238888887777554431     111


Q ss_pred             CCcCCCceEEcCCCC-EEEEe
Q psy4774          58 KPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        58 ~~~~pndl~v~~~G~-iy~TD   77 (120)
                      .-..+..+++++||. |+++.
T Consensus       256 ~~~~~~~~~~spdg~~l~~~~  276 (706)
T 2z3z_A          256 KEKFLTNLSWSPDENILYVAE  276 (706)
T ss_dssp             TTCEEEEEEECTTSSEEEEEE
T ss_pred             CceeEeeEEEECCCCEEEEEE
Confidence            123456899999996 66643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=92.32  E-value=2.3  Score=31.34  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=43.1

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...++|.++|+++++-...| |...|..+++...-..   .....--...+.++++++|...+|-+.
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG---TLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC---CSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe---cccCCCCCceEEEEECCCCCEEEEeeC
Confidence            46899999999988876655 7777876666433221   111112235689999999999888775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.29  E-value=0.62  Score=37.55  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             CCccceE--ECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          12 GRPLGMK--FDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~--~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      .+|.+..  .|+.+.+||+....+ |..||.+++++..-..     .|.   .|+++++++||+ +|++...
T Consensus       154 ~~P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-----~g~---~p~~v~~SpDGr~lyv~~~d  217 (567)
T 1qks_A          154 DRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-----TGY---AVHISRLSASGRYLFVIGRD  217 (567)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEE-----CSS---CEEEEEECTTSCEEEEEETT
T ss_pred             ccccccccccCCCceEEEEeCCCCeEEEEECCCCeEEEEEe-----CCC---CccceEECCCCCEEEEEcCC
Confidence            3454443  445567899987644 9999998887543322     121   467999999985 7887643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=92.12  E-value=0.83  Score=36.57  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             ccceEECCCCcEEE-EEC--C---CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHV-ADA--Y---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V-~d~--~---~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+++ ++|+.++ +..  .   ..|+.+|.++|+...+...   ....-+...+.+++++||.++++-+.
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~spdg~~~~~~~~  356 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE---TSPTWVPLHNSLRFLDDGSILWSSER  356 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE---ECSSCCCCCSCCEECTTSCEEEEECT
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc---CCCCcCCcCCceEECCCCeEEEEecC
Confidence            457889 9996544 322  2   2388899988887776531   11111223468899999987777554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.06  E-value=1.1  Score=32.33  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             eEECC-CCcEEEEEC-----------------CCCEEEEECCCCcEEEEecccccc---CCCCCcCCCceEEcCCCC-EE
Q psy4774          17 MKFDK-NGALHVADA-----------------YFGLYKVNVTTGQTEQLISMDTEI---DGAKPQIPNSVTVDSDGM-VY   74 (120)
Q Consensus        17 l~~d~-~G~l~V~d~-----------------~~gi~~vd~~~g~~~~~~~~~~~~---~g~~~~~pndl~v~~~G~-iy   74 (120)
                      +++.+ +|+++++..                 ...|+.+|.++++...+.......   ..........++++++|. |+
T Consensus       287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  366 (396)
T 3c5m_A          287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVL  366 (396)
T ss_dssp             EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred             CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEE
Confidence            77888 998777532                 134999998888766664310000   000111245688999984 66


Q ss_pred             EEeCCCCcccccceecceecCCceEEEEcCCC
Q psy4774          75 WSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        75 ~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                      |+....              ....||.++..+
T Consensus       367 ~~s~~~--------------~~~~l~~~~~~~  384 (396)
T 3c5m_A          367 FTSDFE--------------GVPAIYIADVPE  384 (396)
T ss_dssp             EEECTT--------------SSCEEEEEECCT
T ss_pred             EEecCC--------------CCceEEEEEEcc
Confidence            665431              134789988766

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=92.05  E-value=0.9  Score=35.92  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             CCccceEECCCCcEE-EEE-CC-------CCEEEEECC-CC---cEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALH-VAD-AY-------FGLYKVNVT-TG---QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~-V~d-~~-------~gi~~vd~~-~g---~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .....+++.+||+.+ ++. ..       ..|+.++.+ +|   +...+..   . .   -..+..+++++||.+||+-.
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~-~---~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG---G-P---EEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---E-T---TBCEEEEEECTTSCEEEEEC
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---C-C---CceEcceEECCCCeEEEEEC
Confidence            345678999999643 333 22       248888887 57   5555542   1 1   12346789999999888765


Q ss_pred             C
Q psy4774          79 S   79 (120)
Q Consensus        79 ~   79 (120)
                      .
T Consensus       261 ~  261 (662)
T 3azo_A          261 R  261 (662)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=91.75  E-value=1.3  Score=32.16  Aligned_cols=55  Identities=20%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             eEECCCCc-EEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          17 MKFDKNGA-LHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        17 l~~d~~G~-l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      .++.|||+ |+.+....+   |+.+|.++|+...+..    ..+..   ...++++|||. |+|+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~----~~~~~---~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE----GRGDN---TFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC----SSCBC---SSSCEECTTSSEEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee----CCCCC---ccceEEcCCCCEEEEEeC
Confidence            67899996 444433233   9999998888776642    11111   22567888884 666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.60  E-value=2.8  Score=30.25  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.++|+++++-...+ |...|.++++......    ...   ...+.++++++|.+.+|-+.
T Consensus       165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~----~h~---~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE----GHA---MPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----CCS---SCCCEEEECTTSCEEEEECT
T ss_pred             ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----ccC---CceeEEEEcCCCCEEEEEcC
Confidence            3456899999998887755555 6667887776433221    111   23578999999988877664

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.56  E-value=0.33  Score=36.03  Aligned_cols=51  Identities=10%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             ceEECCCC-cEEEEE---CC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeC
Q psy4774          16 GMKFDKNG-ALHVAD---AY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDS   78 (120)
Q Consensus        16 Gl~~d~~G-~l~V~d---~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs   78 (120)
                      +.++.++| .||.++   .. ..|++++.++.+.+.+...     ..       .+++++ +.||||+.
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-----~~-------~~~~~~g~~iy~t~~  164 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-----YL-------FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-----CC-------CCSEEETTEEEEECT
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-----Cc-------eEeeEECCEEEEEeC
Confidence            44555554 888888   22 3499999976667777531     11       123443 47888887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=91.49  E-value=1.5  Score=32.15  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=12.5

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      ++.+|++....+|+.+|+++|+.
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~  261 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQI  261 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCE
T ss_pred             CCEEEEEecCcEEEEEECCCCcE
Confidence            45566554444466666655553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=91.18  E-value=1.9  Score=33.15  Aligned_cols=62  Identities=11%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             CCccceEE--CCC-Cc--EEEEECCCCEEE--E-ECCCCcE--EEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCC
Q psy4774          12 GRPLGMKF--DKN-GA--LHVADAYFGLYK--V-NVTTGQT--EQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~--d~~-G~--l~V~d~~~gi~~--v-d~~~g~~--~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~   79 (120)
                      ..|+||++  ++. |.  +||.+....+.+  + +..+|++  +.+...  +..+    .|-++++|+. |.||+++-.
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f--~lgs----q~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF--KMNS----QTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE--ECSS----CEEEEEEETTTTEEEEEETT
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe--cCCC----CcceEEEcCCCCeEEEeccc
Confidence            67999999  775 55  455554323444  3 2234433  222221  1222    4679999974 899999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=91.14  E-value=1.9  Score=30.19  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=40.7

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+++++... ..|..++.++++...+..     ..   ..+..++++++|.+.++-+.
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~---~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-----HE---SCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC-----CS---SCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC-----Cc---cceeEEEECCCCCEEEEecC
Confidence            45678999999977766444 447788887776544421     11   23578999999887776654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=90.94  E-value=1.6  Score=34.91  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=41.3

Q ss_pred             CCCccceEECCCCcEEE-EEC-CC-----CEEEEECCCCcEEEEecccccc-CC-------CCC---------cCCCceE
Q psy4774          11 CGRPLGMKFDKNGALHV-ADA-YF-----GLYKVNVTTGQTEQLISMDTEI-DG-------AKP---------QIPNSVT   66 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V-~d~-~~-----gi~~vd~~~g~~~~~~~~~~~~-~g-------~~~---------~~pndl~   66 (120)
                      ...+..+++.+||+.++ +.. ..     .|+.+|.++|+...+....... ++       ...         .....++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            34578999999997544 443 22     4888999888877776421000 00       000         1257889


Q ss_pred             EcCCCC-EEEEeC
Q psy4774          67 VDSDGM-VYWSDS   78 (120)
Q Consensus        67 v~~~G~-iy~TDs   78 (120)
                      ++|||. |+++..
T Consensus       116 ~SpDg~~l~~~~~  128 (741)
T 2ecf_A          116 WSPDAQRLLFPLG  128 (741)
T ss_dssp             ECTTSSEEEEEET
T ss_pred             ECCCCCEEEEEeC
Confidence            999986 555443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.40  E-value=1.1  Score=32.85  Aligned_cols=11  Identities=9%  Similarity=0.232  Sum_probs=6.0

Q ss_pred             CceEEEEcCCC
Q psy4774          96 SGSFIKIGPNT  106 (120)
Q Consensus        96 ~G~l~~~d~~~  106 (120)
                      .|+||.-+.++
T Consensus       318 ~~~l~v~~~~g  328 (376)
T 3q7m_A          318 NGNLVVGDSEG  328 (376)
T ss_dssp             TTEEEEECTTS
T ss_pred             CCEEEEEeCCC
Confidence            35566655544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.22  E-value=3.5  Score=29.72  Aligned_cols=63  Identities=13%  Similarity=-0.001  Sum_probs=40.5

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.|+|+++++-...+ |...|..+++......     ..........++++++|.+.++-+.
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~~g~~  290 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-----HDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-----cCCcccceEEEEECCCCCEEEEECC
Confidence            4467899999998887765555 6667876665322221     1112223567899999988877654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.18  E-value=2.4  Score=30.57  Aligned_cols=58  Identities=19%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             ccceEECCCCcEEE--EEC-C-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          14 PLGMKFDKNGALHV--ADA-Y-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V--~d~-~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      +..+++.|+|+.++  ++. + ..|+.++.++++...+..    ...   .....+.+++||. |+|+..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~----~~~---~~~~~~~~spdg~~l~~~~~  100 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE----GKG---DNTFGGFISTDERAFFYVKN  100 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC----SSC---BCTTTCEECTTSSEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec----CCC---CccccceECCCCCEEEEEEc
Confidence            56788999996533  332 1 248889988887665532    111   1123467888885 555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=90.18  E-value=2.6  Score=29.10  Aligned_cols=60  Identities=18%  Similarity=0.101  Sum_probs=38.9

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      +....+++.++|.|+++.....|...|.++++......    .+.   .....++++++|.+..+..
T Consensus       226 ~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~---~~i~~~~~~~~~~~~~~~~  285 (313)
T 3odt_A          226 SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT----LPA---ISIWSVDCMSNGDIIVGSS  285 (313)
T ss_dssp             SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEE----CSS---SCEEEEEECTTSCEEEEET
T ss_pred             ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEe----ccC---ceEEEEEEccCCCEEEEeC
Confidence            45678999999976666554447777877776544332    111   2356899999998554433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=90.11  E-value=3.3  Score=29.17  Aligned_cols=61  Identities=15%  Similarity=0.007  Sum_probs=39.7

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..+++.++|+++++-...| |...|..+++......    .+.   .....++++++|+..++-+.
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~h~---~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD----GHT---GTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh----hcC---CcEEEEEEcCCCCEEEEEeC
Confidence            4456899999998777654444 7777877776543331    111   23568888888877766554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.08  E-value=3.9  Score=29.43  Aligned_cols=62  Identities=11%  Similarity=-0.062  Sum_probs=40.6

Q ss_pred             CCccceEECC--CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDK--NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~--~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.+  +|+++++-...+ |...|.++++...+..      ...-...+.++++++|.+.++-+.
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~~i~~~~~~pdg~~lasg~~  190 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS------AKSDVEYSSGVLHKDSLLLALYSP  190 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC------CCSSCCCCEEEECTTSCEEEEECT
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------cCCCCceEEEEECCCCCEEEEEcC
Confidence            3467899999  898888654444 7777887777644331      111123678999999988887443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=90.06  E-value=2.2  Score=29.81  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=36.3

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .....+++.++|+++++-...+ |..++.++++.......  ....   .....++++++|...++-+
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~---~~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL--TSSA---PACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE--ECSS---SCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec--ccCC---CceEEEEECCCCCEEEEEe
Confidence            4567899999998766644444 77778776653333211  1111   2346788888876655544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=89.92  E-value=0.91  Score=33.00  Aligned_cols=65  Identities=17%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             ccceEECCCCcEEEEE---------C-CCCEEEEECCCCcEEEEecccccc---CCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          14 PLGMKFDKNGALHVAD---------A-YFGLYKVNVTTGQTEQLISMDTEI---DGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d---------~-~~gi~~vd~~~g~~~~~~~~~~~~---~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      |.|+++.++|+.+++.         . ...|+.+|.++++...+.......   .+.+......+++++||. |+|+-.
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            6677888888543321         1 234999999888887775310000   001111357889999994 666644

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=89.33  E-value=4.4  Score=29.58  Aligned_cols=63  Identities=10%  Similarity=0.036  Sum_probs=42.2

Q ss_pred             CCccceEECCCCcEEEEECCCC--EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g--i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+++++-...+  |...|.++++......     .|.--...+.++++++|...+|-+.
T Consensus       196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-----~g~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-----RGLDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE-----CTTCCSCEEEEEECTTSCEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-----cCCCCCcEEEEEECCCCCEEEEEEC
Confidence            4456899999998888755555  5556887776433221     1111134579999999998887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=89.32  E-value=0.36  Score=39.68  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=46.8

Q ss_pred             cCCCCccceEECCCCcEEEEECC-CCEEEEECCCCc--------EEEEeccccccCCCC--CcCCCceEEcCCC-CEEEE
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQ--------TEQLISMDTEIDGAK--PQIPNSVTVDSDG-MVYWS   76 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~--------~~~~~~~~~~~~g~~--~~~pndl~v~~~G-~iy~T   76 (120)
                      +.+.+|.+++|+++|++|++..- ..|.+++.+++.        ..++...  ..+-+|  .+...++++++|| .||.+
T Consensus       328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki--dV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL--DVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE--ECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe--ecccccccceeccceEeCCCCCEEEEc
Confidence            55678999999999999998765 448888765411        2233221  122122  5566789999999 58887


Q ss_pred             eCCC
Q psy4774          77 DSST   80 (120)
Q Consensus        77 Ds~~   80 (120)
                      +-.+
T Consensus       406 Nk~s  409 (595)
T 1fwx_A          406 SKFS  409 (595)
T ss_dssp             ESCC
T ss_pred             CCCC
Confidence            7754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=89.08  E-value=2.2  Score=34.62  Aligned_cols=55  Identities=9%  Similarity=0.084  Sum_probs=38.2

Q ss_pred             ccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCc-CCCceEEcCCCC
Q psy4774          14 PLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ-IPNSVTVDSDGM   72 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~-~pndl~v~~~G~   72 (120)
                      -..+++.++|.+++++ ...|...+.++|+..++...   .....+. ..++++++|||.
T Consensus        19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLEN---STFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECT---TTTTTCCSCCCEEEECTTSS
T ss_pred             ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEec---hhhhhhcccccceEECCCCC
Confidence            4578999999887776 44589999999988777642   1111221 235789999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=88.66  E-value=6.1  Score=29.50  Aligned_cols=63  Identities=17%  Similarity=0.123  Sum_probs=38.8

Q ss_pred             CCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-.+|+|.| +++++++-...+ |...|.+++....+...    +. .-.....++++++|.+.++-+.
T Consensus       165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~g~~  229 (435)
T 4e54_B          165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS----DT-INIWFCSLDVSASSRMVVTGDN  229 (435)
T ss_dssp             CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC----SS-CSCCCCCEEEETTTTEEEEECS
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc----CC-CCccEEEEEECCCCCEEEEEeC
Confidence            3456899997 577777655555 66668876666655431    11 2223456788888776666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.36  E-value=5.1  Score=28.22  Aligned_cols=65  Identities=17%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             CCCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+....+++.+ +++++++-...| |...|.++++......   ...+ .-..+..++++++|...++-+.
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---GVEG-HRDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---STTS-CSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---cccc-ccCceeEEEECCCCCEEEEecC
Confidence            34567899999 788777655444 7777887776544331   0011 1224578999999887776654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=88.35  E-value=5  Score=28.88  Aligned_cols=61  Identities=16%  Similarity=0.167  Sum_probs=41.5

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++++++++-...+ |...|..+++......    .+.   ...+.++++|+|+.++|-+.
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~----~h~---~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHE---SDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc----CCc---CCEEEEEEcCCCCEEEEEcC
Confidence            4456899999999888765544 6667877776433321    111   23578999999988887664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=87.85  E-value=5.7  Score=29.10  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=39.4

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEe
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSD   77 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TD   77 (120)
                      +....+++.++|+++++-...+ |..+|.++++......     .+..-..+..+++.++|.++++-
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-----RPHEGTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----CSSCSSSCCEEEECSTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-----cCCCCCcceEEEEcCCCcEEEEe
Confidence            4567899999997766654444 7777887776433321     11111235788899988877765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=87.71  E-value=5.5  Score=29.39  Aligned_cols=68  Identities=18%  Similarity=0.149  Sum_probs=40.5

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEecccccc--CCC---------CCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEI--DGA---------KPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~--~g~---------~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..++|.++|+++++.....+...+.++|+...........  +..         .-...+.++++++|...+|-+.
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  143 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence            4456899999999888755455666777677654332210000  000         0012568899999988777654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=87.35  E-value=4.4  Score=28.77  Aligned_cols=63  Identities=6%  Similarity=-0.106  Sum_probs=39.7

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..+++.++|+++++-...+ |..++.++++.+.+...  ..+.   ...+.++++++|...++-+.
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~h~---~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL--KEHN---GQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE--ECCS---SCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee--cCCC---CcccEEEEeCCCCEEEEEcC
Confidence            4567899999998887765544 66667766653333221  1111   23568888888877766543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=87.30  E-value=1.8  Score=34.38  Aligned_cols=61  Identities=13%  Similarity=0.012  Sum_probs=40.6

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      ..+..+++.++|++++++....|+.+|.++|+...+...    ....-..+..++++|||. |.++
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~----~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEG----KKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECT----TTTTTTTCSEEEECTTSSEEEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecc----ccccccccceEEECCCCCEEEEE
Confidence            458899999999865553223488889888887666531    111101367999999997 4444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=87.20  E-value=2.3  Score=33.14  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             eEECCCC--cEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEE
Q psy4774          17 MKFDKNG--ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYW   75 (120)
Q Consensus        17 l~~d~~G--~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~   75 (120)
                      .++.++|  .+|++....++..+|.++|+...+..    ..+      ++++++|||...+
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~------~~~~~spDG~~la  165 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG------FGFVSDIRGDLIA  165 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS------CEEEEEEETTEEE
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC------ceEEECCCCCEEE
Confidence            3445554  45666555566666877888777753    111      7888999986444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=86.48  E-value=5.2  Score=29.13  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=38.1

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      .....+++.++|+++++-...| |..+|..+++......      ...-.....++++++|. +.++-+.
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP------SKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC------CTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc------cccCCCceeEEEeCCCCCEEEEEeC
Confidence            4456788899997777655544 7777877665433321      11112356788888876 5555443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=86.36  E-value=2.4  Score=31.30  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=41.6

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      +....++|.|+|+++++-...++.+++..+++......    ..+ .-...+.++++++|...++-+
T Consensus       177 ~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~----~~~-~~~~v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          177 GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT----DFD-KNWSLSKINFIADDTVLIAAS  238 (365)
T ss_dssp             SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC----CCC-TTEEEEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEccCCceEEeccceeEEEEEeccCcceeeee----cCC-CCCCEEEEEEcCCCCEEEEEe
Confidence            45678999999998887666778888877776433321    111 112346788999987776644

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=86.34  E-value=3.6  Score=32.47  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=41.6

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .+.|..++++|+|+++++-....|...+.++++......    .+.   ...+.++++|+|.+..|-+.
T Consensus        18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~----~h~---~~v~~~~~spdg~~lasg~~   79 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT----EHS---HQTTVAKTSPSGYYCASGDV   79 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec----CCC---CceEEEEECCCCcEEEEEeC
Confidence            478999999999987776444456667776555333321    121   13568999999988877664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.32  E-value=5.9  Score=29.20  Aligned_cols=59  Identities=14%  Similarity=0.020  Sum_probs=39.4

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      -..++|.++|+++++-...+ |...|.++++......    .+.   ...+.+++.++|...+|-+.
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~----~h~---~~v~~~~~~p~~~~l~s~s~  185 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ----GHE---QDIYSLDYFPSGDKLVSGSG  185 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----cCC---CCEEEEEEcCCCCEEEEecC
Confidence            34789999998877655555 6666887776543331    121   23568899999887777664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=86.16  E-value=6.9  Score=27.41  Aligned_cols=61  Identities=21%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..+++.++|+++++-...+ |...+..+++......    .+.   ...+.++++++|++.+|-+.
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----~h~---~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----GHK---LGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc----cCC---CceEEEEEcCCCCEEEEECC
Confidence            3456799999998777655544 6566776776554432    111   23568999999987777654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=86.08  E-value=7.6  Score=27.86  Aligned_cols=61  Identities=18%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.++|+++++-...+ |...|.++++.....      .+ .-.....++++++|...+|-+.
T Consensus       207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~-h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL------SG-HASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE------CC-CSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE------cC-CCCceEEEEECCCCCEEEEEeC
Confidence            3457899999998888766655 666787766543332      11 1123568999999987777664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=85.31  E-value=5.2  Score=28.79  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             CCCccceEECCCCcEEEEECCC---C-EEEEECCCCcEEEEeccccccCCC-------CCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYF---G-LYKVNVTTGQTEQLISMDTEIDGA-------KPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~---g-i~~vd~~~g~~~~~~~~~~~~~g~-------~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ......+++.++++++++-...   + |..+|..+++........ .....       .-.....++++++|.+.++-+.
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC-cccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            3556789999999887764444   4 677787766643332100 00000       1123568999999988777664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=85.07  E-value=4.4  Score=32.13  Aligned_cols=59  Identities=5%  Similarity=-0.026  Sum_probs=35.9

Q ss_pred             ccceEECCCCcEEEEE-CC---------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          14 PLGMKFDKNGALHVAD-AY---------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d-~~---------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      ...+++.|||+.+++. ..         ..|+.+|.++++...+..    ..+ .-..+..++++|||. |.|+.
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~-~~~~~~~~~~SPdG~~la~~~  132 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP----PEV-SNAKLQYAGWGPKGQQLIFIF  132 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC----TTC-CSCCCSBCCBCSSTTCEEEEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC----Ccc-ccccccccEECCCCCEEEEEE
Confidence            6789999999755542 21         237788888887655532    111 112356788888884 44443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=84.80  E-value=7.5  Score=29.65  Aligned_cols=60  Identities=20%  Similarity=0.152  Sum_probs=38.3

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.++|+++++-...+ |...+. +++......    .+.   ...+.|+++++|.+.+|-+.
T Consensus       468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~----~h~---~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT----GHS---SSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE----CCS---SCEEEEEECTTSSCEEEEET
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe----CCC---CCEEEEEEcCCCCEEEEEEC
Confidence            4456899999998888755555 555575 455332221    122   23578999999987776553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=84.46  E-value=7.6  Score=28.39  Aligned_cols=62  Identities=16%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             CCccceEECCCC-cEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .....+++.++| +++++-...+ |...|.++++......    ..+ .-.....++++++|..++|-+
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~-~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----PDV-HPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC----TTT-CCSCEEEEEECTTSSCEEEEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe----cCC-CCCceEEEEECCCCCEEEEEe
Confidence            456789999998 5776644444 7777887776443321    011 112356788888887665554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=84.46  E-value=2.8  Score=35.46  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             CccceEECCCCcEEEE--EC----C-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVA--DA----Y-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~--d~----~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....+++.|||+.++.  ..    . ..|+.++.++|+...+....... .........+++++||.++|+-+.
T Consensus        54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~-~~~~~~~~~~~~SpDg~ll~~~~~  126 (1045)
T 1k32_A           54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS-TGRRMFTDVAGFDPDGNLIISTDA  126 (1045)
T ss_dssp             EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE-ETTEECSEEEEECTTCCEEEEECT
T ss_pred             cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcc-cccccccccccCCCCCEEEEEECC
Confidence            3457899999975543  21    2 24888998888766653210000 001223468999999998887663

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=84.43  E-value=9.3  Score=27.43  Aligned_cols=65  Identities=11%  Similarity=0.010  Sum_probs=40.6

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEecccccc--CCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEI--DGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~--~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ......+++.++| ++++-...+ |..+|..+++......   ..  +...-..+..++++++|.++++-+.
T Consensus       186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~h~~~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          186 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE---SQHSMINNSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE---CCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe---ccccccccCCccceEEECCCCCEEEEEec
Confidence            4667899999999 766655555 7777877665433321   10  1000223578999999887766553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=84.43  E-value=7.3  Score=29.74  Aligned_cols=63  Identities=8%  Similarity=0.072  Sum_probs=41.2

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcC----------CCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS----------DGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~----------~G~iy~TDs~   79 (120)
                      .+....+++.++|+++++-...+ |...+.++++.....      .+..-...+.+++++          +|.+.+|-+.
T Consensus       488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~  561 (615)
T 1pgu_A          488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  561 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC------SCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe------ecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence            35567899999998887755444 777788777543221      221123457889988          8877776654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=84.41  E-value=7.4  Score=29.69  Aligned_cols=60  Identities=20%  Similarity=0.127  Sum_probs=38.0

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..|+|.|+|+++++-...+ |...|. +++.....    ..+..   ....|+++|+|.+.+|-+.
T Consensus        17 ~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l----~gh~~---~V~~l~fspdg~~las~~~   77 (577)
T 2ymu_A           17 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSS---SVWGVAFSPDGQTIASASD   77 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSS---CEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE----eCCCC---CEEEEEECCCCCEEEEEeC
Confidence            4456899999998877655556 444575 45533222    11221   3468899999988777554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=84.33  E-value=3.5  Score=29.36  Aligned_cols=54  Identities=7%  Similarity=0.077  Sum_probs=36.5

Q ss_pred             ccceEECCCCc-EEEEEC---------------------------CCCEEEEECCCCcE-EEEeccccccCCCCCcCCCc
Q psy4774          14 PLGMKFDKNGA-LHVADA---------------------------YFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNS   64 (120)
Q Consensus        14 P~Gl~~d~~G~-l~V~d~---------------------------~~gi~~vd~~~g~~-~~~~~~~~~~~g~~~~~pnd   64 (120)
                      ...+++.++|+ |+++..                           ...|+.++.++|+. ..+.    .    +  ....
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~----~----~--~~~~  175 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE----K----P--RFSS  175 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE----E----E--TTCE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec----C----C--Cccc
Confidence            56789999995 544431                           13488899888876 5553    1    1  4568


Q ss_pred             eEEcCCCCEEEEeC
Q psy4774          65 VTVDSDGMVYWSDS   78 (120)
Q Consensus        65 l~v~~~G~iy~TDs   78 (120)
                      ++++++| ++|+-+
T Consensus       176 ~~~spdg-~~~~~~  188 (347)
T 2gop_A          176 GIWHRDK-IVVNVP  188 (347)
T ss_dssp             EEEETTE-EEEEEE
T ss_pred             ccCCCCe-EEEEEe
Confidence            8899999 777654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=84.24  E-value=3.4  Score=29.12  Aligned_cols=62  Identities=11%  Similarity=0.026  Sum_probs=41.8

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK   81 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~   81 (120)
                      ....+++.++|+++++-...| |...|.++++.....      .+ .-...+.++++++|...++-+...
T Consensus       275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS------EQ-LDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CC-CSSCEEEEEECTTSSCEEEEECCC
T ss_pred             ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe------cC-CCCCceEEEECCCCCeEEEEeccc
Confidence            466899999997766654444 777788777543322      11 122467999999998777776543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=84.07  E-value=9.9  Score=27.42  Aligned_cols=61  Identities=8%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             CCccceEECC-CCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          12 GRPLGMKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~-~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      .....+++.+ +++++++-...+ |...|.++++......    .+.   .....++++++| .+++|-+.
T Consensus       263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~----~~~---~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP----ARG---NWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE----CSS---SCCCCEEECTTCTTEEEECCS
T ss_pred             CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec----CCC---CceEEEEECCCCCCEEEEEec
Confidence            4467899998 787777655444 6667877665432221    111   246799999998 78888764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=84.03  E-value=8.4  Score=26.58  Aligned_cols=59  Identities=15%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             cceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          15 LGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +-|++.+++ ++++-....|...|.++|+.......    ++ .-...+.++++++|+..+|-+.
T Consensus        29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~----~~-~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQM----EQ-PGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             BCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEEC----CS-TTCCEEEEEECTTSSEEEEEET
T ss_pred             eEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEe----cC-CCCeEEEEEECCCCCEEEEEEC
Confidence            457888776 54443334477779888887655431    11 2223578999999998887664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=83.78  E-value=9.9  Score=27.23  Aligned_cols=65  Identities=6%  Similarity=0.025  Sum_probs=35.2

Q ss_pred             CCccceEECCCCc-EEEEECCCC-EEEEEC----CCCc-------EEEEeccccccCCC-----CCcCCCceEEcCCCCE
Q psy4774          12 GRPLGMKFDKNGA-LHVADAYFG-LYKVNV----TTGQ-------TEQLISMDTEIDGA-----KPQIPNSVTVDSDGMV   73 (120)
Q Consensus        12 g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~----~~g~-------~~~~~~~~~~~~g~-----~~~~pndl~v~~~G~i   73 (120)
                      +....+++.++|. ++++-...+ |...+.    ++++       ...+..   ...+.     .-.....++++++|.+
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH---PFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC---CCCCC------CBCEEEEEECTTSSE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc---cccccccccCCCCceEEEEEcCCCCE
Confidence            5567899999998 777655444 555555    5565       122211   11111     1224568888888876


Q ss_pred             EEEeCC
Q psy4774          74 YWSDSS   79 (120)
Q Consensus        74 y~TDs~   79 (120)
                      .++-+.
T Consensus       123 l~~~~~  128 (425)
T 1r5m_A          123 IVTGVE  128 (425)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            665443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=83.66  E-value=8.5  Score=26.39  Aligned_cols=61  Identities=8%  Similarity=-0.008  Sum_probs=37.9

Q ss_pred             CCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      ......+++.+++.++++.....|..+|.++++......    .+.   ...+.++++++|.++....
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----~~~---~~i~~~~~~~~~~l~~~~~  244 (313)
T 3odt_A          184 NDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYE----GHE---SFVYCIKLLPNGDIVSCGE  244 (313)
T ss_dssp             SSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE----CCS---SCEEEEEECTTSCEEEEET
T ss_pred             cccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhh----cCC---ceEEEEEEecCCCEEEEec
Confidence            455678999999986555544447778887776443321    111   2356788888876555444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=83.54  E-value=7  Score=29.85  Aligned_cols=62  Identities=11%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             CCCCccceEECCCCcEEEEECCCCEEEEECCCC----c-EEEEeccccccCCCCCcC-CCceEEcC--CCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTG----Q-TEQLISMDTEIDGAKPQI-PNSVTVDS--DGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g----~-~~~~~~~~~~~~g~~~~~-pndl~v~~--~G~iy~TDs~   79 (120)
                      ..+.+..+++.++|+++++-....|...+.+++    + ...+.       +.. .. .+.+++++  +|.+.+|-+.
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-------~h~-~~~v~~~~~sp~~~~~~l~s~~~   86 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-------GHG-SSVVTTVKFSPIKGSQYLCSGDE   86 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-------TTT-TSCEEEEEECSSTTCCEEEEEET
T ss_pred             ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe-------cCC-CceEEEEEECcCCCCCEEEEecC
Confidence            347788999999998777644444777777766    3 33331       111 13 57899999  9987776554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=83.46  E-value=5  Score=28.46  Aligned_cols=62  Identities=10%  Similarity=0.027  Sum_probs=37.5

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      +....+++.++|+++++-...+ |...|.++++.......  ...   -..+..++++++|...++-+
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~l~~~~  115 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--LRI---NRAARCVRWAPNEKKFAVGS  115 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--CCC---SSCEEEEEECTTSSEEEEEE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--ecC---CCceeEEEECCCCCEEEEEe
Confidence            4567899999998777644444 66666666664333211  111   12356888888886665544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=83.36  E-value=7.4  Score=28.08  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=37.7

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .-..+++.++|+++++-...+ |...+..+++.+.+..    ..+. -...+.++++++|++.+|-+.
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~----~~~h-~~~v~~v~~sp~~~~l~s~s~  125 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT----LEGH-ENEVKSVAWAPSGNLLATCSR  125 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE----ECCC-SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE----ccCC-CCCceEEEEeCCCCEEEEEEC
Confidence            346799999998877655444 4444544454433322    1221 123578999999988887664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=83.25  E-value=6.9  Score=28.43  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=39.5

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+++++-...+ |...|.++++......    .+.   .....++++++|...+|-+.
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~h~---~~v~~~~~~~~~~~l~s~~~  201 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----GHR---ATVTDIAIIDRGRNVLSASL  201 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE----CCS---SCEEEEEEETTTTEEEEEET
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc----CCC---CcEEEEEEcCCCCEEEEEcC
Confidence            4567899999998777655544 6667876665322221    111   23568999999987776654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=83.01  E-value=9.9  Score=26.63  Aligned_cols=59  Identities=12%  Similarity=0.103  Sum_probs=36.8

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEE--cCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV--DSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v--~~~G~iy~TDs   78 (120)
                      +....+++.++|+++++-...| |...|.++++...+..     ...   ..+.+.+  +++|.++++-+
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~---~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-----HDA---PVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CSS---CEEEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc-----ccC---ceEEEEEEeCCCCCEEEEcc
Confidence            4567899999998777655555 6667887776554432     222   2356666  66666555544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=82.88  E-value=7.2  Score=27.53  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-.+++|.|+|.++++-...| |...|.++++......    ....+   .+.+.+.++|+..+|-+.
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----~~~~~---v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----VTETP---VRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----CCSSC---EEEEEEEGGGTEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----ccCCc---EEEEEEeCCCCEEEEECC
Confidence            4567899999998887755555 5556877665332221    12212   356777777776666554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=82.85  E-value=3.9  Score=30.03  Aligned_cols=62  Identities=16%  Similarity=0.042  Sum_probs=36.0

Q ss_pred             cceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          15 LGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..++|.+++.|+++....-|...|.++++.......  ...+- -...+.|+++++|+..+|-+.
T Consensus        86 ~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~--~~~~H-~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           86 ADLTWVGERGILVASDSGAVELWELDENETLIVSKF--CKYEH-DDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             EEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEE--EEECC-SSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeec--cccCC-CCCEEEEEECCCCCEEEEEeC
Confidence            468899998877665433355557666653222110  00111 123568999999988887664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=82.80  E-value=4.3  Score=29.40  Aligned_cols=63  Identities=13%  Similarity=-0.059  Sum_probs=36.8

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .-..+++.|+|+++++-...+ |...+.++++......   ...+ --...+.++++|+|+..+|-+.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~---~~~~-h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV---LSEG-HQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE---ECSS-CSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee---eccc-cCCcEEEEEECCCCCEEEEEEC
Confidence            455799999998887655544 4444555554321110   0011 1123568889998887776553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=82.74  E-value=9  Score=26.86  Aligned_cols=60  Identities=13%  Similarity=0.137  Sum_probs=37.4

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCC-CcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTT-GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~-g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....+++.++|+++++-...| |..+|..+ ++......    ...   .....++++++|...++-+.
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~---~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID----LHE---KSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe----cCC---CceeEEEECCCCCEEEEecC
Confidence            567889999997776644444 77788765 33322221    111   23568888888876666543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=82.34  E-value=2.5  Score=31.00  Aligned_cols=63  Identities=13%  Similarity=0.035  Sum_probs=32.3

Q ss_pred             ccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      -..++|.+++.++++.....|...|..+++.......  ...+ --...+.|+++++|+..+|-+.
T Consensus        97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~--~~~~-h~~~V~~v~~spdg~~l~sgs~  159 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKF--AKYE-HDDIVKTLSVFSDGTQAVSGGK  159 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEC--------CCCCE--EECC-CSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEee--ccCC-CCCCEEEEEECCCCCEEEEEeC
Confidence            3568999999888875533355556655543222110  0111 1123568889999887777554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=82.19  E-value=12  Score=27.41  Aligned_cols=63  Identities=6%  Similarity=0.030  Sum_probs=40.0

Q ss_pred             CCccceEECCCCcEEEEEC--CCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADA--YFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~--~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+.+++-.  ..| |..++..+++.......    .+ .-.....++++++|...+|-+.
T Consensus       304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----~~-h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----PA-HDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----EC-CSSCCCEEEECTTSSEEEEECT
T ss_pred             CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe----cC-CCCCEEEEEECCCCCEEEEEeC
Confidence            4567899999997776632  344 55556555655544321    11 1124678999999988887664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.98  E-value=6.4  Score=31.49  Aligned_cols=61  Identities=15%  Similarity=0.072  Sum_probs=38.6

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .++..++++.|+|.++++-...| |...|.++++......    .+..   ....++++++|...++-+
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~----~~~~---~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ----VTET---PVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----CCSS---CEEEEEEEGGGTEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe----cCCC---cEEEEEEeCCCCEEEEEe
Confidence            46678999999998777655555 6667876775433321    1222   246788888876554443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=81.92  E-value=9.1  Score=26.85  Aligned_cols=63  Identities=10%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             CccceEECCC--CcEEEEECCCC-EEEEECCCCcEE--EEeccccccCCC-CCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKN--GALHVADAYFG-LYKVNVTTGQTE--QLISMDTEIDGA-KPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~--G~l~V~d~~~g-i~~vd~~~g~~~--~~~~~~~~~~g~-~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....+++.++  |+++++-...| |...|.++++..  .+..    ..+. .-...+.++++++|.+.+|-+.
T Consensus       287 ~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~~  355 (366)
T 3k26_A          287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT----LTHHKCGAAIRQTSFSRDSSILIAVCD  355 (366)
T ss_dssp             CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE----ECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE----EcccccCCceEEEEeCCCCCeEEEEeC
Confidence            4556778777  88888766555 666677665321  1111    1111 1234679999999988887664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=81.86  E-value=11  Score=26.33  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....+++.++|+++++-...+ |...|..+++......   ....   ...+.++++++|...++-+.
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI---DDDN---PPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CSSC---CCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe---ccCC---CceEEEEECCCCCEEEEEcC
Confidence            346789999998777655544 6667877665432221   1111   12356888888876665443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=81.72  E-value=10  Score=27.15  Aligned_cols=60  Identities=10%  Similarity=0.006  Sum_probs=38.5

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.++| ++++... ..|..+|.++++......    ...   ..+..++++++|.++++-+.
T Consensus       290 ~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~---~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          290 QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI----VDG---VPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE----CTT---CCEEEEEECTTSSEEEEEET
T ss_pred             ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc----cCC---ccEEEEEEcCCCCEEEEEEC
Confidence            456789999999 5444344 447777887776443331    112   23568999999987777654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=81.66  E-value=13  Score=27.00  Aligned_cols=63  Identities=8%  Similarity=0.056  Sum_probs=39.1

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.|+|+++++-...+ |...|..+++......     ..........++++++|.+.++-+.
T Consensus       241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~s~~g~~l~~g~~  304 (354)
T 2pbi_B          241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS-----KESIIFGASSVDFSLSGRLLFAGYN  304 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCcccceeEEEEeCCCCEEEEEEC
Confidence            4456899999998877755555 6666776554333321     1111223467889998887776553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=81.35  E-value=4.5  Score=32.54  Aligned_cols=62  Identities=11%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             CccceEECC-CCcEEEEECC------------CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          13 RPLGMKFDK-NGALHVADAY------------FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        13 ~P~Gl~~d~-~G~l~V~d~~------------~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      .+...++.+ +|+|||.-..            ..+..+|+.+++++.+...    ...+-.++..+++..+|.||+.-.
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----~~~~~~~~~~~~~~~~g~lyv~GG  261 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----VTKHDMFCPGISMDGNGQIVVTGG  261 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----ECSCCCSSCEEEECTTSCEEEECS
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----CCCCCCccccccCCCCCCEEEeCC
Confidence            456778877 8899998421            1278889988887666432    122234566788889999998865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=81.23  E-value=14  Score=29.11  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEecccc-ccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDT-EIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~-~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....++|.|+|+++++-...+ |...|..+++......... ...+ --.....++++|+|...+|-+.
T Consensus       191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS-SSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc-cCCCEEEEEECCCCCEEEEEeC
Confidence            3456899999999888755555 6666877776543321000 0001 1124578999999998888765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=80.87  E-value=3.7  Score=33.32  Aligned_cols=54  Identities=9%  Similarity=0.014  Sum_probs=29.7

Q ss_pred             ceEECCCCcEEEEEC--CC---CEEEEECCCCc-------EEEEeccccccCCCCCc--CCCceEEcCCCC
Q psy4774          16 GMKFDKNGALHVADA--YF---GLYKVNVTTGQ-------TEQLISMDTEIDGAKPQ--IPNSVTVDSDGM   72 (120)
Q Consensus        16 Gl~~d~~G~l~V~d~--~~---gi~~vd~~~g~-------~~~~~~~~~~~~g~~~~--~pndl~v~~~G~   72 (120)
                      .+++.+||++++.-.  ..   .|+.+|.++|+       +..+..   +.+..-..  .+...++++||.
T Consensus       264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~---~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          264 DVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE---MSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             EEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE---ECSSSCSSSSSCCCCEECTTSS
T ss_pred             EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee---ccCCceEccCcCCCceEcCCCC
Confidence            467889998655432  21   27778887776       222211   11111111  145788999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=80.24  E-value=5.4  Score=29.69  Aligned_cols=60  Identities=15%  Similarity=0.084  Sum_probs=40.8

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....++|.+++.++++-...+ |...|.++++......    .+.   ...+.++++++|.+.+|-+.
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~----~h~---~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----GHT---DSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----ccC---CcEEEEEEcCCCCEEEEEeC
Confidence            345789999998888755544 6677877776433321    111   23578999999998887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.99
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.69
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.41
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.53
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.46
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.37
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.25
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.16
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.12
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.99
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.95
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.81
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.61
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.18
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.15
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.71
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.24
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.99
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	93.24
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	92.19
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	92.11
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.07
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.83
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	90.32
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	89.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.84
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	89.41
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.4
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	88.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	88.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	87.6
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	87.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	86.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	86.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	85.52
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	84.58
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	84.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	83.9
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.68
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	83.39
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	80.09

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.64  E-value=4.7e-16  Score=115.72  Aligned_cols=101  Identities=20%  Similarity=0.248  Sum_probs=76.0

Q ss_pred             CCCCccceEECCCCc-EEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ..++|+||+++++|+ |||++..++|+++++++ ....++..  ..++.+++.|||++++++|+|||||+...+......
T Consensus        69 ~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g-~~~~~~~~--~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG-TFEEIAKK--DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETTS-CEEECCSB--CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             CCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC-cEEEEEec--cccccccCCCcEEEECCCCCEEEecCccCccccccc
Confidence            356899999999985 78899888999999964 44444432  567889999999999999999999997543322111


Q ss_pred             ecceecCCceEEEEcCCC-ceEecCcc
Q psy4774          89 FDGLTSGSGSFIKIGPNT-QEVLQKQT  114 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~-~~~l~~~L  114 (120)
                       .....+.|+||++++++ +..+++++
T Consensus       146 -~~~~~~~G~v~~~~~dg~~~~~~~~~  171 (314)
T d1pjxa_         146 -RSMQEKFGSIYCFTTDGQMIQVDTAF  171 (314)
T ss_dssp             -BTTSSSCEEEEEECTTSCEEEEEEEE
T ss_pred             -ceeccCCceEEEEeecCceeEeeCCc
Confidence             11256889999999988 66666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.24  E-value=2.2e-11  Score=89.94  Aligned_cols=91  Identities=19%  Similarity=0.279  Sum_probs=68.1

Q ss_pred             cCCCCccceEECCCCcEEEEECC-----CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcc
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK   83 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~-----~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~   83 (120)
                      ...+.|+||+++++|+||||+..     .+++.++..++++..+..     ...+...|||++++++|++||||..... 
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~nd~~~d~~G~l~vtd~~~~~-  152 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-----DLSTAYCIDDMVFDSKGGFYFTDFRGYS-  152 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-----SSSSCCCEEEEEECTTSCEEEEECCCBT-
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc-----CCCcccCCcceeEEeccceeeccccccc-
Confidence            44678999999999999999753     248899987777766653     3345678999999999999999986321 


Q ss_pred             cccceecceecCCceEEEEcCCC--ceEecCcc
Q psy4774          84 LYDGLFDGLTSGSGSFIKIGPNT--QEVLQKQT  114 (120)
Q Consensus        84 ~~~~~~~~~~~~~G~l~~~d~~~--~~~l~~~L  114 (120)
                               ..+.|.++++++++  ++.+.+++
T Consensus       153 ---------~~~~g~v~~~~~dg~~~~~~~~~~  176 (319)
T d2dg1a1         153 ---------TNPLGGVYYVSPDFRTVTPIIQNI  176 (319)
T ss_dssp             ---------TBCCEEEEEECTTSCCEEEEEEEE
T ss_pred             ---------ccCcceeEEEecccceeEEEeecc
Confidence                     23567777777766  56555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.2e-10  Score=83.24  Aligned_cols=64  Identities=23%  Similarity=0.339  Sum_probs=51.6

Q ss_pred             cCCCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+.|.||++|++|+|||+|...+ |+++++.+.. ..+.      ....+..|.+|+++++|+||++|..
T Consensus       179 ~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~------~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVL------PFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEEC------CCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEE------ccCCCCCeEEEEEeCCCCEEEEECC
Confidence            3467899999999999999998755 9999986443 3332      2335788999999999999999996

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=4.9e-10  Score=79.86  Aligned_cols=63  Identities=24%  Similarity=0.340  Sum_probs=50.9

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ...|.||+++++|++||++...+ |.++++++.....+.       ...+..|++|++|++|+||++|...
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-------FTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-------CSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccceeeeee-------ccccCCCccceeeeeeeeeeeecCC
Confidence            46799999999999999998754 999998654443332       2357789999999999999999964

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=5.4e-10  Score=81.70  Aligned_cols=66  Identities=11%  Similarity=0.005  Sum_probs=56.9

Q ss_pred             CCCCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....|.+++++++|+|||+.. .||+++|+++|+.+.++.   ...+.+.+.+||+++|++|++||++..
T Consensus        57 ~~~~~~~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~---~~~~~~~~~~nd~~vd~~G~iw~~~~~  122 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAE---LESDLPGNRSNDGRMHPSGALWIGTMG  122 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEEC---SSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCcEEEEEecCCCEEEEEe-CccEEeecccceeeEEee---eecCCCcccceeeEECCCCCEEEEecc
Confidence            346788999999999999864 689999999999999875   345667888999999999999999975

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=1.8e-09  Score=79.48  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             CCCccceEECCCCcEEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~~~~~~~~~~   88 (120)
                      .+.|-||++|++|+||||+... .|+++||++++......       .|...|..++|++++ +||||++.         
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~-------~p~~~~t~~afg~d~~~lyVt~~~---------  288 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-------CPFEKPSNLHFKPQTKTIFVTEHE---------  288 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-------CSSSCEEEEEECTTSSEEEEEETT---------
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE-------CCCCCEEEEEEeCCCCEEEEEECC---------
Confidence            3568999999999999998764 49999998776433321       133467899999998 59999996         


Q ss_pred             ecceecCCceEEEEcCC
Q psy4774          89 FDGLTSGSGSFIKIGPN  105 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~  105 (120)
                             +|+||+++..
T Consensus       289 -------~g~i~~~~~~  298 (314)
T d1pjxa_         289 -------NNAVWKFEWQ  298 (314)
T ss_dssp             -------TTEEEEEECS
T ss_pred             -------CCcEEEEECC
Confidence                   4788888744

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=1.3e-08  Score=74.70  Aligned_cols=58  Identities=22%  Similarity=0.491  Sum_probs=46.2

Q ss_pred             cceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          15 LGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .|+++|++|+||++|...+ |+++++++++...+..   ...    ..|++|+++++|++|+++..
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~---~~~----~~p~gla~~~dG~l~va~~~  101 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SHK----ANPAAIKIHKDGRLFVCYLG  101 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CSS----SSEEEEEECTTSCEEEEECT
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe---CCC----CCeeEEEECCCCCEEEEecC
Confidence            5999999999999998755 9999998766544432   112    25899999999999999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=9.1e-09  Score=73.80  Aligned_cols=64  Identities=19%  Similarity=0.270  Sum_probs=50.4

Q ss_pred             CCCCccceEECCCCcEEEEECCCC-EEEEECCCCcE-EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~-~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ....|.+++++++|+|||++...+ |.+++++ |+. ..+.     .. ..+..|.+|++|++|+|||+|+..
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g-----~~-g~~~~P~giavD~~G~i~Vad~~~  220 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG-----GE-GITNYPIGVGINSNGEILIADNHN  220 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES-----CT-TTSCSEEEEEECTTCCEEEEECSS
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecC-Cceeeeec-----cc-ccccCCcccccccCCeEEEEECCC
Confidence            457799999999999999998744 8888985 553 3332     12 268889999999999999999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.78  E-value=1.7e-08  Score=73.06  Aligned_cols=65  Identities=25%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             cCCCCccceEECCCCcEEEEECCCC-EEEEE--CCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAYFG-LYKVN--VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd--~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+.|+||+++++|+|||++...+ +.+++  ...+..+.+...      .....||+++++++|++|++|+.
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL------PDAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC------TTCSCEEEEEESSSSEEEEEETT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc------CCccccceeEEccCCCEEeeccc
Confidence            4457899999999999999986643 55544  445667776641      23456899999999999999996

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=1.8e-08  Score=72.23  Aligned_cols=63  Identities=25%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             CCCCccceEECCCCcEEEEECC-CC-EEEEECCCCcE-EEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          10 QCGRPLGMKFDKNGALHVADAY-FG-LYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~l~V~d~~-~g-i~~vd~~~g~~-~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+|.||++|++|+|||+|.. ++ |.++++ +|+. ..+..      +.....|.+|+++++|+||++|..
T Consensus       198 ~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~------~~~~~~p~~vav~~dG~l~V~~~n  263 (279)
T d1q7fa_         198 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES------KVKHAQCFDVALMDDGSVVLASKD  263 (279)
T ss_dssp             TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE------SSCCSCEEEEEEETTTEEEEEETT
T ss_pred             cccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC------CCCCCCEeEEEEeCCCcEEEEeCC
Confidence            4568999999999999999976 44 666676 5774 34432      223456899999999999999864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.69  E-value=2.1e-08  Score=72.48  Aligned_cols=61  Identities=10%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~   80 (120)
                      ...|.|+++++||+|||++...+ |++++++ |+.+.++.    ..    ..|++++++++|++|+++...
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~----~~----~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT----VE----GKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE----CS----SEEEEEEECTTSCEEEEEECT
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc----CC----CCcceEEEcCCCCeEEEecCC
Confidence            35677999999999999999765 9999985 77777764    22    257999999999999998754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.65  E-value=3e-08  Score=74.24  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             CCccceEE--CCCC--cEEEEECC-CC----EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCc
Q psy4774          12 GRPLGMKF--DKNG--ALHVADAY-FG----LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY   82 (120)
Q Consensus        12 g~P~Gl~~--d~~G--~l~V~d~~-~g----i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~   82 (120)
                      -+|.||.+  +.+|  .|||++.. .+    |++++.++.++ +++.   .+.+..+..||||++.++|.+|||+.....
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l-~~~~---~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~  172 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLK---TIRHKLLPSVNDIVAVGPEHFYATNDHYFI  172 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-EEEE---EECCTTCSSEEEEEEEETTEEEEEESCSCC
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeE-EEEe---ecCCccccCccceEEecCCCEEEecCccCc
Confidence            36899876  5566  68888874 22    77788754443 4443   456778899999999999999999864321


Q ss_pred             ccc-cceecceecCCceEEEEcCCCceEecCccc
Q psy4774          83 KLY-DGLFDGLTSGSGSFIKIGPNTQEVLQKQTD  115 (120)
Q Consensus        83 ~~~-~~~~~~~~~~~G~l~~~d~~~~~~l~~~L~  115 (120)
                      ... ......+..+.|+|+++|++..++++++|.
T Consensus       173 ~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~  206 (340)
T d1v04a_         173 DPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFD  206 (340)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEES
T ss_pred             ChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCC
Confidence            110 111122367999999999877888888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-07  Score=68.48  Aligned_cols=84  Identities=20%  Similarity=0.334  Sum_probs=63.3

Q ss_pred             CCCccceEECCC-CcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKN-GALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~-G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|.||++|+. ++||++|...+ |.+++.++..++.+..     ....+..|-+|+++ ++.||+||..         
T Consensus       163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-----~~~~~~~p~~lav~-~~~ly~td~~---------  227 (266)
T d1ijqa1         163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVF-EDKVFWTDII---------  227 (266)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEE-TTEEEEEETT---------
T ss_pred             cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-----CCCcccccEEEEEE-CCEEEEEECC---------
Confidence            477999999976 47999998854 8999997656666653     22346678899999 5899999986         


Q ss_pred             ecceecCCceEEEEcCCC---ceEecCcccc
Q psy4774          89 FDGLTSGSGSFIKIGPNT---QEVLQKQTDK  116 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~---~~~l~~~L~~  116 (120)
                             .++|+++++.+   ++++..++..
T Consensus       228 -------~~~I~~~~~~~g~~~~~~~~~~~~  251 (266)
T d1ijqa1         228 -------NEAIFSANRLTGSDVNLLAENLLS  251 (266)
T ss_dssp             -------TTEEEEEETTTCCCCEEEECSCSC
T ss_pred             -------CCeEEEEECCCCcceEEEEcCCCC
Confidence                   36888887655   6777766654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2.3e-07  Score=66.69  Aligned_cols=71  Identities=25%  Similarity=0.290  Sum_probs=54.7

Q ss_pred             CCCccceEECCCC-cEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCcccccce
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGL   88 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~~~~~~~   88 (120)
                      ...|.||++|+.+ +||++|...+ |.+++.+++.++.++.      +  +..|.+|+++ ++.||+||..         
T Consensus       166 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~------~--~~~P~~lav~-~~~lYwtd~~---------  227 (263)
T d1npea_         166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------G--LQYPFAVTSY-GKNLYYTDWK---------  227 (263)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------C--CCSEEEEEEE-TTEEEEEETT---------
T ss_pred             ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC------C--CCCcEEEEEE-CCEEEEEECC---------
Confidence            4689999999764 7999998755 9999997666666653      2  4457799998 5899999986         


Q ss_pred             ecceecCCceEEEEcCCC
Q psy4774          89 FDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        89 ~~~~~~~~G~l~~~d~~~  106 (120)
                             .++|+++|+.+
T Consensus       228 -------~~~I~~~~~~~  238 (263)
T d1npea_         228 -------TNSVIAMDLAI  238 (263)
T ss_dssp             -------TTEEEEEETTT
T ss_pred             -------CCEEEEEECCC
Confidence                   35777777765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=4.1e-07  Score=65.93  Aligned_cols=75  Identities=19%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CCCccceEECCCC-cEEEEECCC-CEEEEECC--C----CcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCCCCc
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAYF-GLYKVNVT--T----GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY   82 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~~-gi~~vd~~--~----g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~~~~   82 (120)
                      ...|+|+++++++ .||++|... .|++++.+  .    ++...++.    ..+ ....|+++++|++|+||++...   
T Consensus       147 ~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~----~~~-~~g~pdG~~vD~~GnlWva~~~---  218 (295)
T d2ghsa1         147 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID----STG-IKGGMDGSVCDAEGHIWNARWG---  218 (295)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE----CTT-SSSEEEEEEECTTSCEEEEEET---
T ss_pred             cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec----cCc-ccccccceEEcCCCCEEeeeeC---
Confidence            4679999999998 589999874 48887642  2    22344432    122 2346899999999999999875   


Q ss_pred             ccccceecceecCCceEEEEcCCC
Q psy4774          83 KLYDGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        83 ~~~~~~~~~~~~~~G~l~~~d~~~  106 (120)
                                   .|+|++|||++
T Consensus       219 -------------~g~V~~~dp~G  229 (295)
T d2ghsa1         219 -------------EGAVDRYDTDG  229 (295)
T ss_dssp             -------------TTEEEEECTTC
T ss_pred             -------------CCceEEecCCC
Confidence                         35777777766

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.5e-07  Score=63.36  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=50.3

Q ss_pred             CCCccceEECC-CCcEEEEECCC--CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          11 CGRPLGMKFDK-NGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~-~G~l~V~d~~~--gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ..+|.+|++|+ .|.||+++...  .|.+.++++...++++.       ..+..|++|++|+. +.||++|+..
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-------~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-------ENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-------SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-------cccceeeEEEeeccccEEEEecCCc
Confidence            46899999998 57999998763  49999997666777763       23667999999985 6799999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=7.6e-07  Score=63.91  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             CCCccceEECCC-CcEEEEECCC---CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC-CCEEEEeCCC
Q psy4774          11 CGRPLGMKFDKN-GALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSST   80 (120)
Q Consensus        11 ~g~P~Gl~~d~~-G~l~V~d~~~---gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~-G~iy~TDs~~   80 (120)
                      ...|.+|++||. |.||+++...   .|+++++++...++++.       ..+..|++|++|+. +.||++|+..
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-------~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-------DNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-------TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-------ecccccceEEEeecCcEEEEEeCCC
Confidence            367999999986 6889998653   29999987555566653       24668999999975 6899999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.53  E-value=0.00039  Score=47.15  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             CCCccceEECCCC-cEEEEECC--C-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCCCcccc
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAY--F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKLY   85 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~--~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~~~~~~   85 (120)
                      ...|.+++++++| .+|++...  . .|..+|..++++.....     .+   ..|.+++++|||. ||++.+.      
T Consensus       199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-----~~---~~~~~va~spdg~~l~va~~~------  264 (301)
T d1l0qa2         199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-----VG---PDPAGIAVTPDGKKVYVALSF------  264 (301)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-----CC---SSEEEEEECTTSSEEEEEETT------
T ss_pred             cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-----CC---CCEEEEEEeCCCCEEEEEECC------
Confidence            4668999999998 55666432  2 38888988776543322     12   2478999999996 8999885      


Q ss_pred             cceecceecCCceEEEEcCCC
Q psy4774          86 DGLFDGLTSGSGSFIKIGPNT  106 (120)
Q Consensus        86 ~~~~~~~~~~~G~l~~~d~~~  106 (120)
                                .|.|..+|.++
T Consensus       265 ----------~~~i~v~D~~t  275 (301)
T d1l0qa2         265 ----------CNTVSVIDTAT  275 (301)
T ss_dssp             ----------TTEEEEEETTT
T ss_pred             ----------CCeEEEEECCC
Confidence                      35677777655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.46  E-value=0.00038  Score=47.98  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             ceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774          16 GMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus        16 Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      |+++.++|+.+++... ..|..+|.+++++..-.    +.++  -..|.+|+++|||. +|++.+..
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~----~~~~--~~~p~~l~~spDG~~l~v~~~~~   61 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC----VMPD--KFGPGTAMMAPDNRTAYVLNNHY   61 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE----ECSS--CCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE----EcCC--CCCcceEEECCCCCEEEEEECCC
Confidence            7899999988776444 56999999988753322    1221  12478999999985 78998753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.37  E-value=0.00043  Score=47.71  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=47.1

Q ss_pred             CCCccceEECCCCc-EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs   78 (120)
                      ...|.++++.|||+ |||+....+ |..+|.++++...-.... .........|.++++++|| .+|++..
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~-~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-SVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-CSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc-ccccccCCceEEEEEecCCCEEEEEec
Confidence            45799999999995 688887644 999999888754333211 1112234568999999998 4887764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.25  E-value=0.00033  Score=51.65  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=46.6

Q ss_pred             cCCCCccceEECCCCcEEEEECC-C-----------------CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCC
Q psy4774           9 QQCGRPLGMKFDKNGALHVADAY-F-----------------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD   70 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~l~V~d~~-~-----------------gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~   70 (120)
                      +....|+.+++.++|.+|+++.+ .                 .++.+++  ++.+++++        .+.+||||++++|
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~--------~l~~pNGI~~s~d  216 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE--------GFDFANGINISPD  216 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEE--------EESSEEEEEECTT
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcC--------CCCccceeEECCC
Confidence            44567999999999999999632 1                 1556664  45666653        3668999999999


Q ss_pred             C-CEEEEeCCC
Q psy4774          71 G-MVYWSDSST   80 (120)
Q Consensus        71 G-~iy~TDs~~   80 (120)
                      + .|||+++..
T Consensus       217 ~~~lyVa~t~~  227 (340)
T d1v04a_         217 GKYVYIAELLA  227 (340)
T ss_dssp             SSEEEEEEGGG
T ss_pred             CCEEEEEeCCC
Confidence            7 699999974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00098  Score=45.85  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             cCCCCccceEECCCCc-EEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774           9 QQCGRPLGMKFDKNGA-LHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G~-l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...+.|.+|+|.|||+ |||+....+   ++.++..+...+.....    .  .-..|..+++++||+ ||+++..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~----~--~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----A--LPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----E--CSSCCSEEEECTTSSEEEEEETT
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec----c--cCCCceEEEEcCCCCEEeecccC
Confidence            4468899999999995 778876543   44566555555544321    1  123478999999996 7777653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.12  E-value=0.0008  Score=51.13  Aligned_cols=65  Identities=15%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             CCCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccc---cCCCCCcCCCceEEcCC----CCEEEEe
Q psy4774          11 CGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTE---IDGAKPQIPNSVTVDSD----GMVYWSD   77 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~---~~g~~~~~pndl~v~~~----G~iy~TD   77 (120)
                      ...|-+|++.++|+|||++-..| |+++++++++.+.+......   ..++  ...-||+++|+    +.||++-
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge--~GLLgia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQ--NGLLGFAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSS--CSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCC--CceeeEEeCCCCccCCEEEEEE
Confidence            57899999999999999996545 99999888888877653211   1111  12347999874    7899864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.99  E-value=0.0022  Score=43.73  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             CCCCccceEECCCCc-EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS   78 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs   78 (120)
                      .+..|.+|++.|||+ |||+....+ |..+|.++++...-...  .........+.+++++++| .+|++..
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL--STPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC--CBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--CCCcccccceeeEEEcCCCcEEEEeec
Confidence            356799999999996 678876655 88899988876543321  1112234568899999997 4776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.95  E-value=0.0029  Score=42.57  Aligned_cols=63  Identities=22%  Similarity=0.380  Sum_probs=44.8

Q ss_pred             CCCCccceEECCCCc-EEEEECCC-CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCCC
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST   80 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~~-gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~~   80 (120)
                      .+..|.|++++++|+ |||+.... .|..+|.++++......      .  ...|.+++++++|. +|++....
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------A--GSSPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------C--SSSEEEEEECTTSSEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee------c--ccccccccccccccccccccccc
Confidence            356799999999996 78888764 48889988776433221      1  12478999999986 66666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0067  Score=41.41  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=41.0

Q ss_pred             CCCccceEECCCCc-EEEEECCCC---EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g---i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...|.++++.++|+ +|++....+   ++.++..++.......   ...   -..|.+++++|||. ||++++.
T Consensus       229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF---QPT---ETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE---EEC---SSSCCCEEECTTSSEEEEECTT
T ss_pred             cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE---eCC---CCCeeEEEEeCCCCEEEEEECC
Confidence            45678899999995 566655543   5666665444443321   111   13578999999997 8888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.61  E-value=0.0062  Score=44.21  Aligned_cols=66  Identities=23%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             CCCccceEECCCCc-EEEEECCCC-EEEEE-CCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFG-LYKVN-VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd-~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      ...|.+++++|+|+ |||+|.... |+.++ ..+|++......   ....+-..|..++++++|. +|++...
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eecCCCCceEEEEECCCCceEEEeccC
Confidence            35688999999995 899997744 55554 235666544321   1112335688999999986 7788764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.25  E-value=0.0023  Score=47.48  Aligned_cols=63  Identities=10%  Similarity=0.007  Sum_probs=40.1

Q ss_pred             CCCccceEECCCCc-EEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceE----EcCCCC-EEEEeCC
Q psy4774          11 CGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVT----VDSDGM-VYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~-l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~----v~~~G~-iy~TDs~   79 (120)
                      +..|.+++|.|||+ ||++.....|..+|.++++.......  +. +   ..|.+++    +++||. ||+|.+.
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i--~~-~---~~~~~~~~s~~~SpDG~~l~vs~~~  129 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--KI-G---SEARSIETSKMEGWEDKYAIAGAYW  129 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE--EC-C---SEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE--ec-C---CCCCCeEEecccCCCCCEEEEEcCC
Confidence            45699999999995 56676545588889877765444321  11 1   1234444    456885 7887764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.18  E-value=0.025  Score=39.92  Aligned_cols=66  Identities=6%  Similarity=-0.182  Sum_probs=42.7

Q ss_pred             ccceEECCCC-cEEEEECC-----C-----CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          14 PLGMKFDKNG-ALHVADAY-----F-----GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G-~l~V~d~~-----~-----gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      ..++++.+|| .||++...     .     .|..+|+.+++..................|+.+++++|| .|||++..
T Consensus        67 ~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~  144 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC
Confidence            3479999999 57877531     1     188899888876544321000001123458899999999 69998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.93  E-value=0.038  Score=37.17  Aligned_cols=49  Identities=14%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             EEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeCC
Q psy4774          26 HVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSS   79 (120)
Q Consensus        26 ~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs~   79 (120)
                      +++.....|..+|.+++++.....    .. .....|.+++++|||+ +|++.+.
T Consensus         5 vt~~~d~~v~v~D~~s~~~~~~i~----~~-~~~~~~~~i~~spDg~~l~v~~~~   54 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEKMAVDKVIT----IA-DAGPTPMVPMVAPGGRIAYATVNK   54 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEE----CT-TCTTCCCCEEECTTSSEEEEEETT
T ss_pred             EEEcCCCEEEEEECCCCeEEEEEE----CC-CCCCCccEEEECCCCCEEEEEECC
Confidence            333434568889988876543332    11 1234588999999996 7888764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.86  E-value=0.0059  Score=44.50  Aligned_cols=66  Identities=6%  Similarity=-0.044  Sum_probs=39.3

Q ss_pred             CCCccceEECCCCcE-EEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          11 CGRPLGMKFDKNGAL-HVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l-~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      +..|.+++|.|||+. |++.....|..+|.++++....+..  .....+.+.+..+++++||. +|++..
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i--~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--KIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE--eCCCCCcceEEeeeecCCCCEEEEeec
Confidence            456999999999965 5555444588889888876555431  11111222223344456775 677654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.76  E-value=0.013  Score=44.24  Aligned_cols=63  Identities=13%  Similarity=0.122  Sum_probs=37.1

Q ss_pred             CccceEEC---------CCCcEEEEECCC-CEEEEECCC-CcE--EEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          13 RPLGMKFD---------KNGALHVADAYF-GLYKVNVTT-GQT--EQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        13 ~P~Gl~~d---------~~G~l~V~d~~~-gi~~vd~~~-g~~--~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      -|.||.|=         =+|+|+|++-.. .|+++..+. +..  +....     ......-|-||++.|||. +|++|.
T Consensus       350 apsg~~fY~g~~~~fp~~~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~-----~~~~~~R~rdv~~gpDGs~lyv~~d  424 (450)
T d1crua_         350 APSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVP-----MFKSNNRYRDVIASPDGNVLYVLTD  424 (450)
T ss_dssp             CBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEE-----ESCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             cCccceEecCCcccCcccCCCEEEEECcCCEEEEEEEcCCCceeeEEEEe-----ccCCCCCceEEEECCCCCEEEEEEC
Confidence            46777761         157899987664 477765432 221  11111     011112356999999997 789887


Q ss_pred             CC
Q psy4774          79 ST   80 (120)
Q Consensus        79 ~~   80 (120)
                      ..
T Consensus       425 ~~  426 (450)
T d1crua_         425 TA  426 (450)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.35  E-value=0.083  Score=36.09  Aligned_cols=68  Identities=13%  Similarity=0.033  Sum_probs=42.3

Q ss_pred             CCccceEECCCC-cEEEEECC---------CC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          12 GRPLGMKFDKNG-ALHVADAY---------FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G-~l~V~d~~---------~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      +...++++.||| .|||++..         .+ |..+|.++++..............-...|+.++++++| .+|+.+..
T Consensus        47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence            334479999999 57887532         12 77789888876543321101111123457899999997 47777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.15  E-value=0.092  Score=36.26  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             CCCccceEECCCC-cEEEEECC-----CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          11 CGRPLGMKFDKNG-ALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G-~l~V~d~~-----~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      .+-...+++.|+| ++||+...     ..|+.+|.++|++..-..     .+    .+..++++||| .||++...
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-----~~----~~~~~a~SpDG~~l~va~~~   86 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-----GG----FLPNPVAAHSGSEFALASTS   86 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-----CC----CCccEEEcCCCCEEEEEeec
Confidence            4556789999999 77887543     238999998887543321     12    22379999998 57776553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.71  E-value=0.047  Score=38.40  Aligned_cols=65  Identities=11%  Similarity=-0.142  Sum_probs=43.0

Q ss_pred             CCCCccceEECCCC-cEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCc----CCCceEEcCCCCEEEEeC
Q psy4774          10 QCGRPLGMKFDKNG-ALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQ----IPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~----~pndl~v~~~G~iy~TDs   78 (120)
                      .+..|.++++.+|| .|||++.. ..+..+|.++++......    ..+....    ...-+++++||.+.+.+.
T Consensus       122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK----SASCFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE----CSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee----ccCcceEccCCCceEEEEcCCCCEEEEEe
Confidence            35678999999999 68888865 458889988887655543    2222211    223466677887666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.24  E-value=0.098  Score=37.50  Aligned_cols=69  Identities=10%  Similarity=0.037  Sum_probs=41.0

Q ss_pred             CCCCccceEECCCCc-EEEEECCCC-EEEEECCCCcEE---EEecccc---------ccCCCCCcCCCceEEcCCCC-EE
Q psy4774          10 QCGRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQTE---QLISMDT---------EIDGAKPQIPNSVTVDSDGM-VY   74 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~-l~V~d~~~g-i~~vd~~~g~~~---~~~~~~~---------~~~g~~~~~pndl~v~~~G~-iy   74 (120)
                      .+..|.+++|+++|+ +||+....+ |..++.++++..   .+.....         .........+.+++++++|. ||
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            357899999999995 678776543 555554333211   1111000         01112334567899999994 89


Q ss_pred             EEeC
Q psy4774          75 WSDS   78 (120)
Q Consensus        75 ~TDs   78 (120)
                      ++..
T Consensus       271 vsnr  274 (365)
T d1jofa_         271 ASSR  274 (365)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            8865

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.99  E-value=0.19  Score=33.91  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=40.5

Q ss_pred             CCCccceEECCCCcEEE-EECCCC--EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          11 CGRPLGMKFDKNGALHV-ADAYFG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V-~d~~~g--i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .++...++|.|||+.++ +....+  |+..|.+++++..+..     +   ....+.++++|+|...++-+.
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-----~---~~~v~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-----N---LGNVFAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC-----C---CCSEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-----C---CceEEeeeecccccccceecc
Confidence            45678899999996544 433333  6777888888766532     1   123568999999976655443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.60  E-value=0.065  Score=40.53  Aligned_cols=62  Identities=15%  Similarity=0.138  Sum_probs=44.1

Q ss_pred             CCccceEEC--CCC-cEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCC
Q psy4774          12 GRPLGMKFD--KNG-ALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d--~~G-~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~   79 (120)
                      .+|.....+  +|| .|||+|.. ..|.+||.++++...+..    ++  ....|++++++++| .+|++...
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~----iP--~g~gphgi~~spdg~t~YV~~~~  136 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH----IP--NVQAIHGLRLQKVPKTNYVFCNA  136 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE----CT--TCCCEEEEEECCSSBCCEEEEEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe----cC--CCCCccceEEeccCCEEEEEecc
Confidence            345544443  578 68999977 459999999998877653    22  13468999999998 57887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=93.24  E-value=0.2  Score=34.46  Aligned_cols=55  Identities=16%  Similarity=0.120  Sum_probs=38.0

Q ss_pred             CCCCccceEECCCCc--EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC
Q psy4774          10 QCGRPLGMKFDKNGA--LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG   71 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G~--l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G   71 (120)
                      ....|.+++|.+||+  ||++....+ |..+|.++|+...-+.    ..|   ..|+.|++.+++
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~----~~g---~~P~~l~~~~~~  373 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV----ELG---SGPQVLSVMNEA  373 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC----CCC---CCCcEEEEecCC
Confidence            346688999999996  677766655 8888998887543331    122   358899887753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.11  E-value=0.3  Score=34.89  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=40.2

Q ss_pred             CCCCccceEECCCC-c-EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          10 QCGRPLGMKFDKNG-A-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~-l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...+|..+.++.+. + ++|+....| |..+|.+++++..-..     .+   ..|++++++|||. ||++..
T Consensus        17 ~~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~-----~g---~~~~~vafSPDGk~l~~~~~   81 (426)
T d1hzua2          17 PEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-----TG---YAVHISRMSASGRYLLVIGR   81 (426)
T ss_dssp             GGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE-----CC---SSEEEEEECTTSCEEEEEET
T ss_pred             cccCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe-----CC---CCeeEEEECCCCCEEEEEeC
Confidence            34567777776663 4 457666655 8888998887543332     12   2478999999996 566554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.19  E-value=0.44  Score=32.62  Aligned_cols=61  Identities=11%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.|.-|+++++|+.++.-....|+..+.++++...+..    .+.   .....++++|+|++.+|-+.
T Consensus        18 ~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~----~H~---~~v~~~~~sp~g~~latg~~   78 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT----EHS---HQTTVAKTSPSGYYCASGDV   78 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc----CCC---CCEEEEEEeCCCCeEecccc
Confidence            57788999999977665455568888877665443331    111   23578889999988777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.11  E-value=0.21  Score=33.92  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=35.0

Q ss_pred             CCCccceEECCCCc--EEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC
Q psy4774          11 CGRPLGMKFDKNGA--LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG   71 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~--l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G   71 (120)
                      .+.|.++++.++|+  ||++....+ |..+|.++|+...-+.    ..|   ..|.-|++.++|
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~----~~G---~~p~~i~~~d~~  355 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN----QLG---HGPQVITTADMG  355 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC----CCC---SSCCEEECCCCC
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe----CcC---CCccEEEeCCCC
Confidence            35688999999996  566665544 8889998887533221    112   235666666554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.07  E-value=0.43  Score=34.61  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             CCCCccceEECCCC-cE-EEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEeC
Q psy4774          10 QCGRPLGMKFDKNG-AL-HVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDS   78 (120)
Q Consensus        10 ~~g~P~Gl~~d~~G-~l-~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TDs   78 (120)
                      ...+|.....+.+. ++ +|+....| |..+|.+++++..-+.     .|   ..|++++++|||+ +|++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~-----~g---~~~~~v~fSpDG~~l~~~s~   81 (432)
T d1qksa2          17 PEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-----TG---YAVHISRLSASGRYLFVIGR   81 (432)
T ss_dssp             GGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEE-----CS---SCEEEEEECTTSCEEEEEET
T ss_pred             cccCCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEe-----CC---CCeeEEEECCCCCEEEEEcC
Confidence            34566666555553 55 57766655 8889999888654442     23   2489999999996 666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.83  E-value=1.4  Score=28.90  Aligned_cols=63  Identities=13%  Similarity=-0.001  Sum_probs=38.1

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+++++-...+ |...+....+......     ..........++++++|++.++-+.
T Consensus       227 ~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
T d1tbga_         227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-----HDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CTTCCSCEEEEEECSSSCEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc-----cccccCceEEEEECCCCCEEEEEEC
Confidence            3456899999998877655544 6666766554333221     1112223467888888877776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.32  E-value=1.2  Score=31.84  Aligned_cols=64  Identities=9%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC--EEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM--VYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~--iy~TDs   78 (120)
                      -++..+.+-++++++..+ ...|+.+|.++|+.++++... ...+ -.....++.|+|||.  +|.++.
T Consensus        17 ~~~~~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~-~~~~-~~~~i~~~~~SpDg~~i~~~~~~   82 (470)
T d2bgra1          17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENS-TFDE-FGHSINDYSISPDGQFILLEYNY   82 (470)
T ss_dssp             CCCCCCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTT-TTTT-SSSCCCEEEECTTSSEEEEEEEE
T ss_pred             ccccCCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchh-hhhh-ccCccceeEECCCCCEEEEEECC
Confidence            345567888888765443 456999999999988776421 1111 123467999999996  555553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.98  E-value=0.4  Score=31.36  Aligned_cols=50  Identities=18%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             ECCC--CcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEE
Q psy4774          19 FDKN--GALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWS   76 (120)
Q Consensus        19 ~d~~--G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~T   76 (120)
                      +.|+  |+-++-.....|+.+|.++|+.+.|..    ..+    .....+++|||. |+|+
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~----~~~----~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVS----NLG----VINNARFFPDGRKIAIR   58 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEEEEEC----SSS----EEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEEEEec----CCC----cccCEEECCCCCEEEEE
Confidence            3455  644333222348888888888887753    122    124678899984 6555

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.84  E-value=0.62  Score=32.31  Aligned_cols=60  Identities=7%  Similarity=-0.079  Sum_probs=39.0

Q ss_pred             cceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          15 LGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        15 ~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..++|+++|+++++-...+ |...+.++++.+.+...  +.+..   ..+.|+++|+|+..+|-+.
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l--~gH~~---~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL--KEHNG---QVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE--ECCSS---CEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe--cCCCC---CEEEEEECCCCCEEEEEEC
Confidence            5789999998887655555 55566656665555421  11222   2478899999887777554

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=89.41  E-value=0.081  Score=36.45  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             ceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEe
Q psy4774          16 GMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSD   77 (120)
Q Consensus        16 Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TD   77 (120)
                      -|-|||+|.||..... .+++-.|..+.-+.++...+.+...--..++.+.|.++|+||-.-
T Consensus       138 ~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         138 FLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             EEEECCCceEEEEECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            4789999999988443 588877655543333332222222222345799999999999763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.40  E-value=1.2  Score=29.25  Aligned_cols=59  Identities=17%  Similarity=0.098  Sum_probs=38.2

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ...+++.++|+++++-...| |...|..+++......    .+.   ...+.|+++++|.+.+|-+.
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~H~---~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA----GHD---NRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC----CCS---SCEEEEEECTTSSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc----CCC---CCEEEEEEeCCCCEEEEEcc
Confidence            35688999998877755544 6667877666433221    121   23578899999887777553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.97  E-value=2.3  Score=28.74  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=39.3

Q ss_pred             CccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCC----cCCCceEEcCCCCEEEEeCC
Q psy4774          13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKP----QIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        13 ~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~----~~pndl~v~~~G~iy~TDs~   79 (120)
                      ....++++++|+++++-...+ |...+..+++......    .....+    .....++++++|...+|-+.
T Consensus       191 ~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE----DDSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB----CTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccCcccccccccccccccccccccccccccccc----ccccccccccccccccccCCCCCEEEEEeC
Confidence            346899999998877644444 6667876665433322    111111    23468899999988887553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.80  E-value=0.81  Score=30.08  Aligned_cols=59  Identities=10%  Similarity=0.225  Sum_probs=38.2

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      -..|++.++|+++++-...| |...|.++++......   ..+   -.....+++.++|.++.+-.
T Consensus        15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~h---~~~v~~v~~~~~g~~~~~~~   74 (299)
T d1nr0a2          15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---DVH---ATMITGIKTTSKGDLFTVSW   74 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---CSC---SSCEEEEEECTTSCEEEEET
T ss_pred             cEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---CCC---CCcEEEEEeeccceeecccc
Confidence            45789999998877654445 6666887776543321   111   12346788888888776654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.73  E-value=1.8  Score=28.61  Aligned_cols=60  Identities=18%  Similarity=0.351  Sum_probs=41.1

Q ss_pred             CCCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCC-EEEEe
Q psy4774          11 CGRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD   77 (120)
Q Consensus        11 ~g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~-iy~TD   77 (120)
                      .+....+++.++|+.+++-.. ..++.++.++++...+..    .   ......+++++++|. |.++.
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER----S---REAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----C---SSSCCCCEEECTTSCEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeee----c---ccccccchhhccceeeeeeec
Confidence            345678999999987776544 458888988887665542    1   123457899999986 44443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.68  E-value=3  Score=28.54  Aligned_cols=60  Identities=20%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             ccceEECCCCcEEEEECC--CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~--~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      ..+.++..+|.|||.-..  ..+..+|+++.+.+.+...    ..  -..-+..++..||.||+.-..
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~----~~--~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM----QV--ARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC----SS--CCSSCEEEECTTSCEEEECCC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccc----cc--cccccceeeecCCceeeeccc
Confidence            457889999999998533  4588899988887766431    11  123467888899999988554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.60  E-value=1.2  Score=29.24  Aligned_cols=64  Identities=16%  Similarity=0.069  Sum_probs=38.1

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      .....+++.++++.+++-.. ..|...+..+++......   ...+ .-...+.++++++|...+|-+.
T Consensus       180 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~---~~~~-h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---SWTF-HTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---CCCC-CSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccc---cccc-cccccccccccccccceEEEcC
Confidence            45678999999977665443 447777766554322111   1111 1123467888998887776553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.52  E-value=2.1  Score=28.84  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=38.5

Q ss_pred             CCccceEECCCCcEEEEECCCCEEEEECCCCcEEEEeccccccC-----------CCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEID-----------GAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~gi~~vd~~~g~~~~~~~~~~~~~-----------g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +.-..|+|+++|+++++-....|...+..+++...-........           ...-...+.|+++++|++.+|-+.
T Consensus        63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~  141 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  141 (388)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence            44568999999998877543346666766666432221000000           001112457888998887777554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=86.97  E-value=1.2  Score=33.30  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             cCCCCccceEECCCC-cEEEEECC-CC------------------EEEEECCCCcEEEEeccccccCCCCCcCCCceEEc
Q psy4774           9 QQCGRPLGMKFDKNG-ALHVADAY-FG------------------LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD   68 (120)
Q Consensus         9 ~~~g~P~Gl~~d~~G-~l~V~d~~-~g------------------i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~   68 (120)
                      +.+..|.|+++.++| .+||+... ..                  +..+|.++.++.--.    ..++    .|.+++++
T Consensus       113 P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI----~v~~----~p~~v~~s  184 (441)
T d1qnia2         113 PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV----IVDG----NLDNTDAD  184 (441)
T ss_dssp             TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE----EESS----CCCCEEEC
T ss_pred             CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE----ecCC----CccceEEC
Confidence            446789999999998 56887533 22                  244777665543211    1222    47899999


Q ss_pred             CCC-CEEEEeCC
Q psy4774          69 SDG-MVYWSDSS   79 (120)
Q Consensus        69 ~~G-~iy~TDs~   79 (120)
                      ++| .+|+|...
T Consensus       185 pdGk~a~vt~~n  196 (441)
T d1qnia2         185 YTGKYATSTCYN  196 (441)
T ss_dssp             SSSSEEEEEESC
T ss_pred             CCCCEEEEEecC
Confidence            998 58888654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.67  E-value=2.9  Score=28.85  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             ccceEECCCCcEEEEECC---CCEEE-EECCCCcEEEEeccccccCCC---CC----cCCCceEEcCCCCEEEEeCC
Q psy4774          14 PLGMKFDKNGALHVADAY---FGLYK-VNVTTGQTEQLISMDTEIDGA---KP----QIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~---~gi~~-vd~~~g~~~~~~~~~~~~~g~---~~----~~pndl~v~~~G~iy~TDs~   79 (120)
                      -..++|.|+|+++++-..   .++++ .|.++|+...-.... .....   .+    ...+.|+++|+|++.+|-+.
T Consensus       234 V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~-~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc-cccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            457899999988876432   23444 587777643332210 00000   11    23567999999999888775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.52  E-value=1.8  Score=28.01  Aligned_cols=51  Identities=20%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             CEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCC-CEEEEeCCCCcccccceecceecCCceEEEEcCCC--ceE
Q psy4774          33 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNT--QEV  109 (120)
Q Consensus        33 gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G-~iy~TDs~~~~~~~~~~~~~~~~~~G~l~~~d~~~--~~~  109 (120)
                      .|+.+|+++++.+.+..      +...   +-..+++|| .|+|+-                  .|.||.+|.++  ++.
T Consensus       215 ~l~~~d~~g~~~~~lt~------~~~~---~~~~~SpDG~~I~f~~------------------~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         215 QIYSTDLDGKDLRKHTS------FTDY---YPRHLNTDGRRILFSK------------------GGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEEEETTSCSCEECCC------CCSS---CEEEEEESSSCEEEEE------------------TTEEEEECTTTCCEEE
T ss_pred             ceEEEeCCCCceEEeec------CCCc---ccccCcCCCCEEEEEe------------------CCEEEEEECCCCCEEE
Confidence            49999998777776642      1111   123567776 577643                  25789998877  544


Q ss_pred             e
Q psy4774         110 L  110 (120)
Q Consensus       110 l  110 (120)
                      |
T Consensus       268 i  268 (281)
T d1k32a2         268 I  268 (281)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=3.8  Score=27.40  Aligned_cols=60  Identities=12%  Similarity=0.072  Sum_probs=39.0

Q ss_pred             CCccceEECCCCcEEEEECC-CCEEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~-~gi~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....++++++++++++-.. ..|...+.++++.....     .+.   ...+.++++++|...+|-+.
T Consensus       225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~---~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-----LHE---SCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-----CCS---SCEEEEEECTTSSEEEEEET
T ss_pred             cceEEEEEcccccccceecccccccccccccccccccc-----ccc---cccceEEECCCCCEEEEEeC
Confidence            45568899999987776444 44777787666543332     111   23568899999887777553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.28  E-value=1.3  Score=28.28  Aligned_cols=58  Identities=12%  Similarity=0.074  Sum_probs=32.8

Q ss_pred             ccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          14 PLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        14 P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      -..+++.++|+++++-...| |...|.++++.....    ..+.   ...+.++++++|.+.+|-+
T Consensus       250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~---~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHE---HFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCS---SCEEEEEECSSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE----cCCC---CCEEEEEEcCCCCEEEEEe
Confidence            35678888887666544444 555566555432221    1111   1246788888887666644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.17  E-value=2.2  Score=32.21  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.||+++....|+.+|+++|++
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~   90 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKR   90 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCe
Confidence            48999999877799999999985

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.97  E-value=1  Score=34.15  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=19.8

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.|||++....|+.+|.++|+.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~   99 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNR   99 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCe
Confidence            58999998777799999999974

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.90  E-value=2.1  Score=32.41  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=17.7

Q ss_pred             CCcEEEEECC-CCEEEEEC-CCCcE
Q psy4774          22 NGALHVADAY-FGLYKVNV-TTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~-~gi~~vd~-~~g~~   44 (120)
                      +|.|||++.. ..|+.+|. ++|+.
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~   86 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKI   86 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCce
Confidence            5899999864 56999996 46873

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.68  E-value=1.1  Score=33.91  Aligned_cols=23  Identities=13%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             CCcEEEEECCCCEEEEECCCCcE
Q psy4774          22 NGALHVADAYFGLYKVNVTTGQT   44 (120)
Q Consensus        22 ~G~l~V~d~~~gi~~vd~~~g~~   44 (120)
                      +|.|||+.....|+.+|.++|++
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~   88 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKE   88 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCE
Confidence            58999998777799999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.39  E-value=4.5  Score=27.01  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeCC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS   79 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs~   79 (120)
                      +....+++.++|+++++-...+ |...|.++++.....    . +.   ..+..++++++|...+|-+.
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----~-~~---~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----K-ES---SSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----E-CS---SCEEEEEECTTSCEEEEEET
T ss_pred             cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc----c-CC---CCEEEEEEeCCCCEEEEEeC
Confidence            4457899999998887755555 555677767643222    1 11   23468899999987777553

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.09  E-value=4.3  Score=27.88  Aligned_cols=65  Identities=9%  Similarity=0.047  Sum_probs=37.6

Q ss_pred             CCccceEECCCCcEEEEECCCC-EEEEECCCCcEEEEeccccccCCCCCcCCCceEEcCCCCEEEEeC
Q psy4774          12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS   78 (120)
Q Consensus        12 g~P~Gl~~d~~G~l~V~d~~~g-i~~vd~~~g~~~~~~~~~~~~~g~~~~~pndl~v~~~G~iy~TDs   78 (120)
                      ...+.+++.++|.| ++-...+ |...|.++++............+ --...+.|+++|+|++.+|-+
T Consensus       185 ~~~~~v~~s~dg~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs  250 (393)
T d1sq9a_         185 QFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAH  250 (393)
T ss_dssp             CCCCEEEECTTSEE-EEECTTSEEEEEETTTTEEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEE
T ss_pred             CcEEEEEECCCCEE-EEEeCCCcEEEEeeccccccccccccccccc-ccceEEEcccccccceeeeec
Confidence            44667999999844 4444455 66668877764322211001111 112457899999998887754