Psyllid ID: psy480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
ESHGASTSSATSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSGKLEGAGLNFSGDV
cccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccEEEEEEHHHccccccEEEEEEEccccc
ccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEHHHccHHHHHHHHHHcccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHcccHHHHcHHHHHHHHHHcccccccccHHHHHHcHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccEEEEEccccccccccccccEEEEcccc
eshgastssatsweeechqlhpssgsehedlssdvdsesnnpvanwdrdhkigDVFVASFSKSIVLEiysepwpigtGIIRLVMCFKSIVLEIYSEFINNFSAAMDVargeskkkpALAEFFKsrqnssmdrLSFFglmvkpvqrfpQFILFLQSRQNSSMDRLSFfglmvkpvqrfPQFILFLQDLLnhtghghpdrMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISgklstrplaDVHRVLLRQDDVTQLVSALVARSsgklegaglnfsgdv
eshgastssatsweeECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFfksrqnssmDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVarssgklegaglnfsgdv
ESHGastssatsWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSGKLEGAGLNFSGDV
********************************************NWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDV************************RLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLE********************DILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVA*****************
****************CHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ**********SFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE******QTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQ**************GAGLNFSGD*
****************************************NPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMD********KPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSGKLEGAGLNFSGDV
***********SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARS**K*EG*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ESHGASTSSATSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLVSALVARSSGKLEGAGLNFSGDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
Q8C033 1345 Rho guanine nucleotide ex yes N/A 0.575 0.121 0.401 2e-36
A2AWP8 1280 Rho guanine nucleotide ex no N/A 0.575 0.127 0.409 2e-36
Q5R5M3 1233 Rho guanine nucleotide ex yes N/A 0.575 0.132 0.404 2e-36
Q9HCE6 1279 Rho guanine nucleotide ex yes N/A 0.575 0.127 0.404 2e-36
O15013 1369 Rho guanine nucleotide ex no N/A 0.575 0.119 0.397 3e-36
Q29RM4 1237 Rho guanine nucleotide ex yes N/A 0.575 0.131 0.404 5e-36
Q1ZXH8 1632 Guanine exchange factor f yes N/A 0.371 0.064 0.394 7e-15
Q80U35 2057 Rho guanine nucleotide ex no N/A 0.565 0.077 0.253 7e-13
Q96PE2 2063 Rho guanine nucleotide ex no N/A 0.558 0.076 0.251 1e-12
Q07139 913 Protein ECT2 OS=Mus muscu no N/A 0.561 0.174 0.243 9e-11
>sp|Q8C033|ARHGA_MOUSE Rho guanine nucleotide exchange factor 10 OS=Mus musculus GN=Arhgef10 PE=1 SV=2 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 119/219 (54%), Gaps = 56/219 (25%)

Query: 43  VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
           V+ WD    IGDVFVASFSKS+VL+ Y                         SE++NNFS
Sbjct: 465 VSEWDVVETIGDVFVASFSKSMVLDAY-------------------------SEYVNNFS 499

Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
            A+ V +     KPA                               F+ FL+  Q+SS D
Sbjct: 500 TAVAVLKKTCATKPA-------------------------------FLEFLKLSQDSSPD 528

Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
           R++   LM++P+QRFPQFIL LQD+L +T  GHPDR+ LQ+ALT+LE+LAE LNERKR+A
Sbjct: 529 RVTLHSLMMRPIQRFPQFILLLQDMLKNTAKGHPDRLPLQMALTELETLAEKLNERKRDA 588

Query: 223 EQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLV 261
           +Q    K I K+I+ +   + L+  +R L+R DDV + V
Sbjct: 589 DQRCEIKQIAKAINERYLNKLLSSGNRYLVRSDDVIETV 627
May play a role in developmental myelination of peripheral nerves.
Mus musculus (taxid: 10090)
>sp|A2AWP8|ARGAL_MOUSE Rho guanine nucleotide exchange factor 10-like protein OS=Mus musculus GN=Arhgef10l PE=1 SV=1 Back     alignment and function description
>sp|Q5R5M3|ARGAL_PONAB Rho guanine nucleotide exchange factor 10-like protein OS=Pongo abelii GN=ARHGEF10L PE=2 SV=1 Back     alignment and function description
>sp|Q9HCE6|ARGAL_HUMAN Rho guanine nucleotide exchange factor 10-like protein OS=Homo sapiens GN=ARHGEF10L PE=1 SV=3 Back     alignment and function description
>sp|O15013|ARHGA_HUMAN Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4 Back     alignment and function description
>sp|Q29RM4|ARGAL_BOVIN Rho guanine nucleotide exchange factor 10-like protein OS=Bos taurus GN=ARHGEF10L PE=2 SV=1 Back     alignment and function description
>sp|Q1ZXH8|GXCDD_DICDI Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum GN=gxcDD PE=4 SV=3 Back     alignment and function description
>sp|Q80U35|ARHGH_MOUSE Rho guanine nucleotide exchange factor 17 OS=Mus musculus GN=Arhgef17 PE=1 SV=2 Back     alignment and function description
>sp|Q96PE2|ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17 PE=1 SV=1 Back     alignment and function description
>sp|Q07139|ECT2_MOUSE Protein ECT2 OS=Mus musculus GN=Ect2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
328716979 1144 PREDICTED: rho guanine nucleotide exchan 0.572 0.141 0.568 7e-60
91090764 1238 PREDICTED: similar to CG8557 CG8557-PB [ 0.572 0.130 0.573 8e-57
270013964 1499 hypothetical protein TcasGA2_TC012652 [T 0.572 0.108 0.573 1e-56
307205482 1294 Rho guanine nucleotide exchange factor 1 0.572 0.125 0.564 2e-56
307169939 1560 Rho guanine nucleotide exchange factor 1 0.572 0.103 0.559 1e-55
340715757 1539 PREDICTED: rho guanine nucleotide exchan 0.572 0.105 0.559 3e-55
383853146 1538 PREDICTED: rho guanine nucleotide exchan 0.572 0.105 0.559 3e-55
350418109 1539 PREDICTED: rho guanine nucleotide exchan 0.572 0.105 0.559 3e-55
380019365 1538 PREDICTED: rho guanine nucleotide exchan 0.572 0.105 0.559 3e-55
328791021 1539 PREDICTED: rho guanine nucleotide exchan 0.572 0.105 0.559 4e-55
>gi|328716979|ref|XP_001947574.2| PREDICTED: rho guanine nucleotide exchange factor 10-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 148/218 (67%), Gaps = 56/218 (25%)

Query: 43  VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
           VANWDRDH+IGDVFV SFSK+IVL+I                         YS FINNF 
Sbjct: 375 VANWDRDHRIGDVFVGSFSKAIVLDI-------------------------YSGFINNFL 409

Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
            AM++A+ E+K+K +LAEFFK+RQ +                               S D
Sbjct: 410 NAMELAKTETKRKASLAEFFKNRQEA-------------------------------SHD 438

Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
           RLSF+ LMVKPVQRFPQFILFLQDLL++TG+GHPDRMSLQLALTQLESLAE+LNERKRE+
Sbjct: 439 RLSFYSLMVKPVQRFPQFILFLQDLLHNTGYGHPDRMSLQLALTQLESLAEMLNERKRES 498

Query: 223 EQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260
           EQ QAFK++LKS+S KL+ RP+AD +R LLRQDDVTQ+
Sbjct: 499 EQAQAFKEMLKSVSSKLAVRPIADSNRCLLRQDDVTQI 536

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91090764|ref|XP_969066.1| PREDICTED: similar to CG8557 CG8557-PB [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270013964|gb|EFA10412.1| hypothetical protein TcasGA2_TC012652 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307205482|gb|EFN83799.1| Rho guanine nucleotide exchange factor 10 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307169939|gb|EFN62448.1| Rho guanine nucleotide exchange factor 10 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340715757|ref|XP_003396375.1| PREDICTED: rho guanine nucleotide exchange factor 10-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383853146|ref|XP_003702084.1| PREDICTED: rho guanine nucleotide exchange factor 10-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350418109|ref|XP_003491739.1| PREDICTED: rho guanine nucleotide exchange factor 10-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380019365|ref|XP_003693579.1| PREDICTED: rho guanine nucleotide exchange factor 10-like [Apis florea] Back     alignment and taxonomy information
>gi|328791021|ref|XP_397118.4| PREDICTED: rho guanine nucleotide exchange factor 10-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
UNIPROTKB|I3LKY7739 ARHGEF10 "Uncharacterized prot 0.406 0.155 0.521 1.8e-36
FB|FBgn0263706 1719 CG43658 [Drosophila melanogast 0.385 0.063 0.636 8.8e-36
UNIPROTKB|B4DTE2 488 ARHGEF10L "cDNA FLJ53189, high 0.406 0.235 0.534 3.9e-35
ZFIN|ZDB-GENE-030131-6210 1239 arhgef10 "Rho guanine nucleoti 0.441 0.100 0.488 4.6e-35
UNIPROTKB|F1PXG8 1156 ARHGEF10 "Uncharacterized prot 0.406 0.099 0.513 1.3e-33
UNIPROTKB|Q5VXI4 1052 ARHGEF10L "Rho guanine nucleot 0.406 0.109 0.534 2e-33
MGI|MGI:1920004 1280 Arhgef10l "Rho guanine nucleot 0.406 0.089 0.543 2.3e-33
UNIPROTKB|H0YAN8 988 ARHGEF10 "Rho guanine nucleoti 0.406 0.116 0.513 2.6e-33
UNIPROTKB|E1BH05 1343 Bt.25593 "Uncharacterized prot 0.406 0.085 0.530 3.2e-33
UNIPROTKB|E2QXL1 1233 ARHGEF10L "Uncharacterized pro 0.406 0.093 0.534 3.3e-33
UNIPROTKB|I3LKY7 ARHGEF10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 303 (111.7 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
 Identities = 60/115 (52%), Positives = 83/115 (72%)

Query:   147 PQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALT 206
             P F+ FL+  Q SS DR++ + LM+KP+QRFPQFIL LQD+L +T  GHPDR+ LQ+ALT
Sbjct:   533 PAFLEFLKQCQESSPDRVTLYSLMMKPIQRFPQFILLLQDMLKNTPRGHPDRLPLQMALT 592

Query:   207 QLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQLV 261
             +LE+LAE LNERKR+A+Q    K I K+I+ +   + L+   R L+R DD+ + V
Sbjct:   593 ELETLAEKLNERKRDADQRCEIKQIAKAINERYLNKLLSSGSRYLVRSDDMIETV 647
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
FB|FBgn0263706 CG43658 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B4DTE2 ARHGEF10L "cDNA FLJ53189, highly similar to Homo sapiens Rho guanine nucleotide exchange factor (GEF) 10-like, transcript variant 1, mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6210 arhgef10 "Rho guanine nucleotide exchange factor (GEF) 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXG8 ARHGEF10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VXI4 ARHGEF10L "Rho guanine nucleotide exchange factor 10-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1920004 Arhgef10l "Rho guanine nucleotide exchange factor (GEF) 10-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|H0YAN8 ARHGEF10 "Rho guanine nucleotide exchange factor 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH05 Bt.25593 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXL1 ARHGEF10L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 8e-22
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 2e-14
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 6e-13
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information 
 Score = 89.6 bits (223), Expect = 8e-22
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 58/175 (33%)

Query: 43  VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
           +  W    +IGD+F+                                  ++YS + +N+ 
Sbjct: 63  LEEWPDIQRIGDIFLKFAPF----------------------------FKVYSTYCSNYP 94

Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
            A+++ +   KK P  A+F K                              +   +    
Sbjct: 95  RALELLKKLRKKNPRFAKFLK------------------------------ECEASPLCR 124

Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNE 217
            L     ++KPVQR P++ L L++LL HT   HPD   L+ AL  ++ +A  +NE
Sbjct: 125 GLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYEDLKKALEAIKEVASQINE 179

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
KOG4424|consensus 623 99.97
KOG3523|consensus 695 99.94
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.92
KOG3520|consensus 1167 99.92
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.91
KOG4305|consensus 1029 99.89
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.89
KOG3522|consensus 925 99.82
KOG2996|consensus 865 99.78
KOG3518|consensus 521 99.75
KOG3521|consensus 846 99.66
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.65
KOG3524|consensus 850 99.56
KOG3519|consensus 756 99.54
KOG3531|consensus 1036 99.41
KOG2070|consensus 661 99.37
KOG0689|consensus 448 98.95
KOG4240|consensus 1025 98.78
KOG4269|consensus 1112 98.21
KOG3524|consensus 850 94.03
KOG0931|consensus 627 91.43
cd01218104 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain 90.5
cd0122896 PH_BCR-related BCR (breakpoint cluster region)-rel 89.89
KOG3522|consensus 925 83.62
>KOG4424|consensus Back     alignment and domain information 
Probab=99.97  E-value=2.6e-31  Score=253.84  Aligned_cols=151  Identities=21%  Similarity=0.352  Sum_probs=141.4

Q ss_pred             HHHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhh
Q psy480           90 VLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGL  169 (283)
Q Consensus        90 ~l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  169 (283)
                      |+++|++|+.||++|+.++..+.++++.|++++.++++++                              .|+++.|+++
T Consensus       144 FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~------------------------------~cg~l~Lqhh  193 (623)
T KOG4424|consen  144 FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQP------------------------------ECGGLKLQHH  193 (623)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhch------------------------------hcCCccchhh
Confidence            6799999999999999999999999999999999998764                              7899999999


Q ss_pred             hhcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCc
Q psy480          170 MVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKLSTRPLADVHR  249 (283)
Q Consensus       170 Li~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~~~~~L~~~~R  249 (283)
                      |+.||||||||.|||+++++++|++.||+.+++.|++.|...+.++|.+++++|+.++|++++.++.+-   +++++|+|
T Consensus       194 MiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e---~dIV~Psr  270 (623)
T KOG4424|consen  194 MIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNE---EDIVSPSR  270 (623)
T ss_pred             eechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccccCcHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999985   67999999


Q ss_pred             eEEEecceeeccccccC---C----ccccee
Q psy480          250 VLLRQDDVTQLVSALVA---R----SSGKLE  273 (283)
Q Consensus       250 ~LI~eG~l~~~~~~~~~---r----~~~~l~  273 (283)
                      +||+||.+.+++.....   |    |||+++
T Consensus       271 eLiKEG~l~Kis~k~~~~qeRylfLFNd~~l  301 (623)
T KOG4424|consen  271 ELIKEGQLQKISAKNGTTQERYLFLFNDILL  301 (623)
T ss_pred             HHhhccceeeeeccCCCcceeEEEEehhHHH
Confidence            99999999999876432   3    777654

>KOG3523|consensus Back     alignment and domain information
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>KOG3520|consensus Back     alignment and domain information
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG0689|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG0931|consensus Back     alignment and domain information
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2pz1_A466 Crystal Structure Of Auto-Inhibited Asef Length = 4 2e-05
3jzy_A 510 Crystal Structure Of Human Intersectin 2 C2 Domain 8e-05
3gf9_A295 Crystal Structure Of Human Intersectin 2 Rhogef Dom 9e-05
2dx1_A482 Crystal Structure Of Rhogef Protein Asef Length = 4 1e-04
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 2e-04
3ky9_A 587 Autoinhibited Vav1 Length = 587 2e-04
1ki1_B352 Guanine Nucleotide Exchange Region Of Intersectin I 2e-04
3qbv_B351 Structure Of Designed Orthogonal Interaction Betwee 3e-04
2vrw_B 406 Critical Structural Role For The Ph And C1 Domains 3e-04
3bji_A 378 Structural Basis Of Promiscuous Guanine Nucleotide 3e-04
2dfk_A 402 Crystal Structure Of The Cdc42-Collybistin Ii Compl 4e-04
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef Length = 466 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 145 RFPQFILFLQS-RQNSSMDRLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQL 203
           +  +++ F ++ R    M  +S  G ++ PVQ+  ++ L L +LL +T   H D   ++ 
Sbjct: 228 KLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEA 287
Query: 204 ALTQLESLAELLNERKREAE 223
           AL  ++++A+L+NERKR  E
Sbjct: 288 ALHAMKNVAQLINERKRRLE 307
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 Back     alignment and structure
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295 Back     alignment and structure
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482 Back     alignment and structure
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure
>pdb|3KY9|A Chain A, Autoinhibited Vav1 Length = 587 Back     alignment and structure
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 406 Back     alignment and structure
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide Exchange By The T-Cell Essential Vav1 Length = 378 Back     alignment and structure
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 2e-30
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 3e-28
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 2e-25
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 2e-24
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 2e-22
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 1e-21
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 2e-21
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 9e-21
2pz1_A466 RHO guanine nucleotide exchange factor 4; helical 5e-20
1xcg_A368 PDZ-rhogef, RHO guanine nucleotide exchange factor 5e-20
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 7e-20
3t06_A418 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-19
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 9e-18
1txd_A385 RHO guanine nucleotide exchange factor 12; helical 8e-17
3odw_A536 RHO guanine nucleotide exchange factor 1; regulati 3e-16
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 4e-15
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 3e-12
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 1e-10
1kz7_A353 Guanine nucleotide exchange factor DBS; guanine nu 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 2e-04
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
 Score =  117 bits (294), Expect = 2e-30
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 61/218 (27%)

Query: 43  VANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFS 102
           ++NW+   K+ DVF+A                                 + ++  I  F 
Sbjct: 97  LSNWESQQKVADVFLAREQG----------------------------FDHHATHILQFD 128

Query: 103 AAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMD 162
             + +        P LA   +  +                              Q+    
Sbjct: 129 RYLGLLSENCLHSPRLAAAVREFE------------------------------QSVQGG 158

Query: 163 RLSFFGLMVKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREA 222
             +    +++ VQR  Q+ + L D LN+      +  + Q AL+ +  + +  N+   + 
Sbjct: 159 SQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQG 218

Query: 223 EQTQAFKDILKSISGKLSTRPLADVHRVLLRQDDVTQL 260
           E  Q    I  S+ G+     L    R  L++  + ++
Sbjct: 219 ENLQKLVHIEHSVRGQ---GDLLQPGREFLKEGTLMKV 253
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
1xcg_A368 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 100.0
3t06_A418 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 100.0
2pz1_A466 RHO guanine nucleotide exchange factor 4; helical 99.98
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 99.98
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 99.98
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 99.97
1txd_A385 RHO guanine nucleotide exchange factor 12; helical 99.97
3odw_A536 RHO guanine nucleotide exchange factor 1; regulati 99.97
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 99.97
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.96
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 99.96
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 99.95
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 99.95
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 99.95
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.93
1kz7_A353 Guanine nucleotide exchange factor DBS; guanine nu 99.93
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 99.92
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 99.91
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 98.48
1zc3_B113 Exocyst complex protein EXO84; exocytosis, small G 89.21
4gou_A518 EHRGS-rhogef; RGS domain, DH domain, PH domain, RH 85.14
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-33  Score=260.55  Aligned_cols=212  Identities=17%  Similarity=0.233  Sum_probs=182.0

Q ss_pred             ChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHHH
Q psy480           12 SWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIVL   91 (283)
Q Consensus        12 ~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l   91 (283)
                      ..++++..+|.++-+++ ++|..|+..|+++..+|+....|||+|++++....                      ...++
T Consensus        57 l~~~~~~~iF~ni~~i~-~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~----------------------~~~~~  113 (368)
T 1xcg_A           57 MPREELARLFPNLPELI-EIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPA----------------------REELQ  113 (368)
T ss_dssp             SCHHHHHHHSSSHHHHH-HHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHH----------------------HHHHH
T ss_pred             CCHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHccchh----------------------HHHHH
Confidence            34678899999987775 89999999999999999888999999999765310                      01256


Q ss_pred             HhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhhh
Q psy480           92 EIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMV  171 (283)
Q Consensus        92 ~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLi  171 (283)
                      ++|..||.||+.|...+.++.++|+.|+.|++.|+..+                              .|++++|.+||+
T Consensus       114 ~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~------------------------------~~~~l~L~~~Li  163 (368)
T 1xcg_A          114 QVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP------------------------------QCRRLQLRDLII  163 (368)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG------------------------------GGTTCCHHHHTT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhCh------------------------------hhccCChHHHhh
Confidence            99999999999999999999889999999999987653                              578999999999


Q ss_pred             cccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CC
Q psy480          172 KPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSISGKL----------ST  241 (283)
Q Consensus       172 ~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~g~~----------~~  241 (283)
                      +|||||+||+|||++|+|+||++||||..|..|++.|+.++..||+.+++.|+..++.+++++|.++.          ..
T Consensus       164 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~pl~~~~  243 (368)
T 1xcg_A          164 SEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEF  243 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGG
T ss_pred             hHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998631          01


Q ss_pred             ccccccCceEEEecceeeccccccCC------cccceeccc
Q psy480          242 RPLADVHRVLLRQDDVTQLVSALVAR------SSGKLEGAG  276 (283)
Q Consensus       242 ~~L~~~~R~LI~eG~l~~~~~~~~~r------~~~~l~~a~  276 (283)
                      ..|..++|+||++|.+++..+....+      |+|.|+.+.
T Consensus       244 ~~l~~~~R~li~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k  284 (368)
T 1xcg_A          244 KSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQ  284 (368)
T ss_dssp             GGCCGGGSCEEEEEEEEECCSSSCCCEEEEEEESSEEEEEE
T ss_pred             hhcccccceEEeecceEeeecCCCeeEEEEEcccccHHHhh
Confidence            24677899999999998654332222      899888775
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Back     alignment and structure
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 4e-19
d1xcga1228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 6e-18
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 7e-18
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 1e-16
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 8e-16
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 1e-15
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 7e-13
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 7e-12
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 7e-11
d1ntya1184 a.87.1.1 (A:1231-1414) Triple functional domain pr 2e-09
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 4e-19
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 34/161 (21%)

Query: 66  LEIYSEPWPIGTGIIRLVMCFKSIVLEIYSEFINNFSAAMDVARGESKKKPALAEFFKSR 125
           LE  ++       +    +     +  +Y  +  N  +A++V                  
Sbjct: 75  LEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLT---------------- 118

Query: 126 QNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQ 185
                             +   +   F++++  SS   L     + KP  R  ++   L+
Sbjct: 119 ------------------EHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLK 160

Query: 186 DLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQ 226
           +L  H    H DR  +Q ++   ++L+    E ++  E   
Sbjct: 161 ELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELEL 201
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.96
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.94
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 99.93
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.93
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 99.91
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.91
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.89
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.87
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.84
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 96.75
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 96.21
d1xcga2140 Rho guanine nucleotide exchange factor 11, PDZ-Rho 89.7
d1ki1b2142 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 88.41
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-28  Score=209.58  Aligned_cols=173  Identities=17%  Similarity=0.281  Sum_probs=155.1

Q ss_pred             CChHHHhhhhccCchhHHHHHhHHHHHHhhhhhhcCCCCCchHHHHHhhhhhhHHHhhhcCCCCchhhHHHHHHHhhhHH
Q psy480           11 TSWEEECHQLHPSSGSEHEDLSSDVDSESNNPVANWDRDHKIGDVFVASFSKSIVLEIYSEPWPIGTGIIRLVMCFKSIV   90 (283)
Q Consensus        11 ~~~~~~~~~l~~~~l~~h~~~~~~ll~~L~~~~~~~~~~~~igdifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~   90 (283)
                      ...+++...+|+++-++ .++|..|+..|+++..+|+....|||+|+.++...                      +...+
T Consensus        56 ~l~~~~~~~lF~~i~~l-~~~h~~fl~~L~~~~~~~~~~~~ig~~~~~~~~~~----------------------~~~~~  112 (228)
T d1xcga1          56 LMPREELARLFPNLPEL-IEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGP----------------------AREEL  112 (228)
T ss_dssp             SSCHHHHHHHSSSHHHH-HHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHH----------------------HHHHH
T ss_pred             cCCHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhcCCccccHHHHHHHHhhHH----------------------HHHHH
Confidence            44567888899887665 48888899999999999999999999999866432                      12235


Q ss_pred             HHhHHHHHHcHHHHHHHHHHHhhcChHHHHHHHHHhcCccccchhhcccccccccchhHHHHHHhhhccccCCCChhhhh
Q psy480           91 LEIYSEFINNFSAAMDVARGESKKKPALAEFFKSRQNSSMDRLSFFGLMVKPVQRFPQFILFLQSRQNSSMDRLSFFGLM  170 (283)
Q Consensus        91 l~~Y~~Y~~n~~~a~~~l~~~~~~n~~f~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lL  170 (283)
                      +++|..||.+++.+..++..+.+.++.|+.|++.++..+                              .|++++|.+||
T Consensus       113 ~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~~~------------------------------~~~~~~l~~~l  162 (228)
T d1xcga1         113 QQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP------------------------------QCRRLQLRDLI  162 (228)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG------------------------------GGTTCCHHHHT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhcCc------------------------------ccccCCHHHHH
Confidence            789999999999999999999999999999999998654                              57889999999


Q ss_pred             hcccchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy480          171 VKPVQRFPQFILFLQDLLNHTGHGHPDRMSLQLALTQLESLAELLNERKREAEQTQAFKDILKSIS  236 (283)
Q Consensus       171 i~PvQRi~RY~LLL~~Llk~Tp~~~pd~~~L~~A~~~i~~v~~~in~~~~~~E~~~~l~~l~~~i~  236 (283)
                      ++|+||++||++||++|+++||++||||..+..|+..+++++..||+.++.+|+..++.+++++|+
T Consensus       163 ~~P~qRl~rY~llL~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~e~~~~l~~l~~~ld  228 (228)
T d1xcga1         163 ISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD  228 (228)
T ss_dssp             THHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             hhHHHHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999874
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure