Psyllid ID: psy4828

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MSKSNVNNVNMKEMIPNLPDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW

ccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHcHHHHHHHcHHHHHHHHHHHccccccccHHHHHcHHHHHHHHcccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccc

ccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHEEEEEHHHHHHHHHHcccccHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHccc

msksnvnnvnmkemipnlpddktdMIAATSVLQQQATEVrnqrpnwntyqqsqmiskedydfiTVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEysqtkrepvCSQFLnllngsdgfIINMTAKIIAKIACWsvdllnpsdlNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLtfnpkladrmnkfnviptlADILSDSvkeknliekptepalakENCIAMVQSKVLKQLSILeqrkfddedIVEDVQFLNEKLQASVQDLSSFDEYKTEVKsgrlewspvhrsaQFWRENAPRLHEKNYELLKSLIHLLEtsrdplvlsvasydigeyvrhcprgkhvIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW

msksnvnnvnMKEMIPNLPDDKTDMIAATSVLQQQAtevrnqrpnwntyQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFkeysqtkrepvcSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEkptepalakeNCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKsgrlewspvhrSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW

*****************************************************MISKEDYDFITVFDTA*************GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLI******ALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV***

******************PDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVF****************GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV*****SDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW

*****VNNVNMKEMIPNLPDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		448	2.2.26 [Sep-21-2011]
Q9U5N0		475	V-type proton ATPase subu	N/A	N/A	0.977	0.922	0.671	1e-179
Q9V3J1		468	V-type proton ATPase subu	yes	N/A	0.953	0.912	0.678	1e-178
Q8BVE3		483	V-type proton ATPase subu	yes	N/A	0.950	0.881	0.527	1e-137
O46563		483	V-type proton ATPase subu	yes	N/A	0.948	0.879	0.528	1e-137
Q9TVC1		483	V-type proton ATPase subu	yes	N/A	0.948	0.879	0.526	1e-137
Q9UI12		483	V-type proton ATPase subu	yes	N/A	0.950	0.881	0.523	1e-136
Q619W9		470	Probable V-type proton AT	N/A	N/A	0.959	0.914	0.511	1e-132
Q22494		470	Probable V-type proton AT	yes	N/A	0.959	0.914	0.515	1e-130
Q20666		451	Probable V-type proton AT	no	N/A	0.928	0.922	0.423	2e-97
A8XDF8		451	Probable V-type proton AT	N/A	N/A	0.928	0.922	0.421	6e-95

>sp\|Q9U5N0\|VATH_MANSE V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1	Back alignment and function desciption

 Score =  626 bits (1615), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/457 (67%), Positives = 370/457 (80%), Gaps = 19/457 (4%)

Query: 4   SNVNNVNMKEMIPNLPDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFI 63
           +N+ +  + ++IP L DDK DMIAATSVLQ +A+E+R  + NW +Y Q QMI++ D+DFI
Sbjct: 2   ANIGDEKVSQLIPTLGDDKIDMIAATSVLQIRASEIRQTQINWQSYLQGQMITQRDHDFI 61

Query: 64  TVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIF 123
              D      + ++ ++     A  FLNLL HISKD TIQYILVLIDDIL ED+SRV+IF
Sbjct: 62  VNLDQRG---QKDLPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIF 118

Query: 124 KE--YSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLK 181
           +E  YS    +P    FLNLLN  D F+ +MTA+IIAK+ACW   L++ SDL+FYL+WLK
Sbjct: 119 RETKYSGNIWQP----FLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK 174

Query: 182 DQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCL 241
           DQLK+ NNDY+QSVARCLQMMLR+DEYR AF++VDGI TLLS+L+ RVNFQ+QYQL+FCL
Sbjct: 175 DQLKMNNNDYIQSVARCLQMMLRVDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCL 234

Query: 242 WVLTFNPKLADRMNKFNVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCI 291
           WVLTFNP LA++MNKFN IP LADILSDSVKEK          NLIEKP +  +AKE+CI
Sbjct: 235 WVLTFNPLLAEKMNKFNAIPILADILSDSVKEKVTRIVLAVFRNLIEKPQDQQVAKEHCI 294

Query: 292 AMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWS 351
           AMVQ KVLKQLSILEQ++ DDEDI+ DV+FLNE+LQASVQDLSSFD+Y TEVKSGRLEWS
Sbjct: 295 AMVQCKVLKQLSILEQKRSDDEDIMNDVEFLNERLQASVQDLSSFDQYATEVKSGRLEWS 354

Query: 352 PVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHV 411
           PVH+SA+FWRENA RL+E+  ELL++L+HLLE S DP+VL+VA YD+GEYVRH PRGKH+
Sbjct: 355 PVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHI 414

Query: 412 IEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
           IEQLGGKQ VM LLSH+DPNVRYEALLAVQKLMVHNW
Sbjct: 415 IEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNW 451

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Manduca sexta (taxid: 7130)

>sp\|Q9V3J1\|VATH_DROME V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=2 SV=2	Back alignment and function description

>sp\|Q8BVE3\|VATH_MOUSE V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1	Back alignment and function description

>sp\|O46563\|VATH_BOVIN V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2	Back alignment and function description

>sp\|Q9TVC1\|VATH_PIG V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1	Back alignment and function description

>sp\|Q9UI12\|VATH_HUMAN V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1	Back alignment and function description

>sp\|Q619W9\|VATH2_CAEBR Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis briggsae GN=vha-15 PE=3 SV=1	Back alignment and function description

>sp\|Q22494\|VATH2_CAEEL Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis elegans GN=vha-15 PE=3 SV=1	Back alignment and function description

>sp\|Q20666\|VATH1_CAEEL Probable V-type proton ATPase subunit H 1 OS=Caenorhabditis elegans GN=vha-18 PE=3 SV=1	Back alignment and function description

>sp\|A8XDF8\|VATH1_CAEBR Probable V-type proton ATPase subunit H 1 OS=Caenorhabditis briggsae GN=vha-18 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
328723847		452	PREDICTED: v-type proton ATPase subunit	0.975	0.966	0.746	0.0
340712519		483	PREDICTED: v-type proton ATPase subunit	0.988	0.917	0.752	0.0
156547735		484	PREDICTED: V-type proton ATPase subunit	0.988	0.915	0.746	0.0
393692793		515	vacuolar ATPase subunit H [Locusta migra	0.968	0.842	0.707	0.0
383852404		484	PREDICTED: V-type proton ATPase subunit	0.988	0.915	0.750	0.0
242015342		455	vacuolar ATP synthase subunit H, putativ	0.977	0.962	0.738	0.0
328792071		484	PREDICTED: v-type proton ATPase subunit	0.988	0.915	0.748	0.0
332374276		486	unknown [Dendroctonus ponderosae]	0.975	0.899	0.738	0.0
307168562		519	Vacuolar proton pump subunit H [Camponot	0.988	0.853	0.702	0.0
340712521		515	PREDICTED: v-type proton ATPase subunit	0.988	0.860	0.703	0.0

>gi\|328723847\|ref\|XP_001949116.2\| PREDICTED: v-type proton ATPase subunit H-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/449 (74%), Positives = 386/449 (85%), Gaps = 12/449 (2%)

Query: 10  NMKEMIPNLPDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTA 69
           NMKE++P  P++  DM AATSVLQQQA E+RN  PNW++Y QSQMIS++ +DFI+ +D  
Sbjct: 6   NMKEILPAFPEENIDMFAATSVLQQQAAEIRNLNPNWSSYLQSQMISQDVFDFISAYDVT 65

Query: 70  SSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQT 129
            +  + + LN+ R  +AK F +LLEHISK+STIQY+LVLIDD+L EDRSRVEIF EY+  
Sbjct: 66  DT--KGQFLNDNRQQSAKAFFSLLEHISKESTIQYVLVLIDDLLTEDRSRVEIFHEYALK 123

Query: 130 KREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANN 189
           K EPVC  FLNLLN +DGFI NM+A+IIAK AC+S DL+N +DL FYL W+K+QL  ANN
Sbjct: 124 KNEPVCGNFLNLLNAADGFINNMSARIIAKFACYSTDLINQTDLQFYLNWIKEQLLSANN 183

Query: 190 DYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPK 249
           +YMQSVARCLQM+LR DEYR AFI+VDGI TLLS+LSGRVNFQIQYQLIFC+WV+TFNP+
Sbjct: 184 EYMQSVARCLQMLLRRDEYRTAFISVDGISTLLSILSGRVNFQIQYQLIFCVWVMTFNPR 243

Query: 250 LADRMNKFNVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVL 299
           LA+RMNKFNVIP LADILSDSVKEK          NLIEKP +   +KE+CIAMVQSKVL
Sbjct: 244 LAERMNKFNVIPILADILSDSVKEKVTRIILAVFRNLIEKPEDNTTSKEHCIAMVQSKVL 303

Query: 300 KQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQF 359
           KQLSI EQRKFDDEDIVED+QFLNE+LQASVQDLSSFDEY TEVKSGRLEWSPVHRSAQF
Sbjct: 304 KQLSIFEQRKFDDEDIVEDIQFLNERLQASVQDLSSFDEYATEVKSGRLEWSPVHRSAQF 363

Query: 360 WRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ 419
           WRENA RL+E+NYELL+ L+HLLETSRDPLVLSVAS+D+GEYVRH PRGKH+IEQLGGKQ
Sbjct: 364 WRENASRLNERNYELLRILVHLLETSRDPLVLSVASFDVGEYVRHYPRGKHIIEQLGGKQ 423

Query: 420 LVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
           LVMQLLSH+D NVRYEALLAVQKLMVHNW
Sbjct: 424 LVMQLLSHDDANVRYEALLAVQKLMVHNW 452

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|340712519\|ref\|XP_003394806.1\| PREDICTED: v-type proton ATPase subunit H-like isoform 1 [Bombus terrestris] gi\|350399853\|ref\|XP_003485660.1\| PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Bombus impatiens]	Back alignment and taxonomy information

>gi\|156547735\|ref\|XP_001605466.1\| PREDICTED: V-type proton ATPase subunit H isoform 1 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|393692793\|gb\|AFN11665.1\| vacuolar ATPase subunit H [Locusta migratoria manilensis]	Back alignment and taxonomy information

>gi\|383852404\|ref\|XP_003701718.1\| PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|242015342\|ref\|XP_002428318.1\| vacuolar ATP synthase subunit H, putative [Pediculus humanus corporis] gi\|212512914\|gb\|EEB15580.1\| vacuolar ATP synthase subunit H, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|328792071\|ref\|XP_003251675.1\| PREDICTED: v-type proton ATPase subunit H isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|332374276\|gb\|AEE62279.1\| unknown [Dendroctonus ponderosae]	Back alignment and taxonomy information

>gi\|307168562\|gb\|EFN61620.1\| Vacuolar proton pump subunit H [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|340712521\|ref\|XP_003394807.1\| PREDICTED: v-type proton ATPase subunit H-like isoform 2 [Bombus terrestris] gi\|350399856\|ref\|XP_003485661.1\| PREDICTED: V-type proton ATPase subunit H-like isoform 2 [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
FB\|FBgn0027779		468	VhaSFD "Vacuolar H[+]-ATPase S	0.953	0.912	0.678	2.3e-158
UNIPROTKB\|F1MZL6		465	ATP6V1H "V-type proton ATPase	0.948	0.913	0.548	8.7e-127
ZFIN\|ZDB-GENE-021219-2		481	atp6v1h "ATPase, H+ transporti	0.582	0.542	0.605	2.1e-126
MGI\|MGI:1914864		483	Atp6v1h "ATPase, H+ transporti	0.582	0.540	0.612	2.4e-125
UNIPROTKB\|Q9TVC1		483	ATP6V1H "V-type proton ATPase	0.582	0.540	0.608	6.4e-125
UNIPROTKB\|F1MZL8		483	ATP6V1H "V-type proton ATPase	0.582	0.540	0.608	6.4e-125
UNIPROTKB\|O46563		483	ATP6V1H "V-type proton ATPase	0.582	0.540	0.608	8.1e-125
UNIPROTKB\|E2RHZ8		483	ATP6V1H "Uncharacterized prote	0.582	0.540	0.612	1.3e-124
UNIPROTKB\|Q9UI12		483	ATP6V1H "V-type proton ATPase	0.582	0.540	0.612	1.7e-124
UNIPROTKB\|I3LQB3		465	ATP6V1H "V-type proton ATPase	0.948	0.913	0.534	3.5e-123

FB\|FBgn0027779 VhaSFD "Vacuolar H[+]-ATPase SFD subunit" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1543 (548.2 bits), Expect = 2.3e-158, P = 2.3e-158
 Identities = 299/441 (67%), Positives = 358/441 (81%)

Query:    18 LPDDKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEM 77
             LP++  DMIAATSVLQQQA ++R +  NW +Y QSQMIS+EDY  I+  D +    RA  
Sbjct:     7 LPEENIDMIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYKAISALDKS----RASF 62

Query:    78 LNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQ 137
             L +      KT LNL+ H+SKDSTIQYILVL+DD+LQEDRSRV++F + +   ++ +   
Sbjct:    63 LAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQEDRSRVDLFHDTAGKLKQCIWGP 122

Query:   138 FLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVAR 197
             FLNLLN  DGFI+NM+++I+AK ACW  + +  SDLNFYL +LKDQL   NN+Y+QSVAR
Sbjct:   123 FLNLLNRQDGFIVNMSSRILAKFACWGHETMPKSDLNFYLQFLKDQLASNNNEYIQSVAR 182

Query:   198 CLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKF 257
             CLQMMLR+DEYR AF+ VDGI TL+ +LS RVNFQ+QYQLIFCLWVLTFNP LA +MNKF
Sbjct:   183 CLQMMLRVDEYRFAFVGVDGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKF 242

Query:   258 NVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQ 307
             +VIP LADILSD  KEK          NLIEKP + ++AK++CIAMVQ KVLKQLSILEQ
Sbjct:   243 SVIPILADILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSILEQ 302

Query:   308 RKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367
             R+FDDEDI  DV++L+EKLQ SVQDLSSFDEY TEV+SGRLEWSPVH+SA+FWRENA RL
Sbjct:   303 RRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRL 362

Query:   368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH 427
             +EKNYELL+ L+HLLETS+D ++LSVA +DIGEYVRH PRGKHV+EQLGGKQ+VMQ L H
Sbjct:   363 NEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGH 422

Query:   428 EDPNVRYEALLAVQKLMVHNW 448
             EDPNVRYEALLAVQKLMVHNW
Sbjct:   423 EDPNVRYEALLAVQKLMVHNW 443

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=NAS

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB\|F1MZL6 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021219-2 atp6v1h "ATPase, H+ transporting, lysosomal, V1 subunit H" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1914864 Atp6v1h "ATPase, H+ transporting, lysosomal V1 subunit H" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9TVC1 ATP6V1H "V-type proton ATPase subunit H" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MZL8 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O46563 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHZ8 ATP6V1H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UI12 ATP6V1H "V-type proton ATPase subunit H" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LQB3 ATP6V1H "V-type proton ATPase subunit H" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9U5N0	VATH_MANSE	No assigned EC number	0.6717	0.9776	0.9221	N/A	N/A
O46563	VATH_BOVIN	No assigned EC number	0.5286	0.9486	0.8799	yes	N/A
Q9TVC1	VATH_PIG	No assigned EC number	0.5264	0.9486	0.8799	yes	N/A
Q9LX65	VATH_ARATH	No assigned EC number	0.2819	0.875	0.8888	yes	N/A
Q9UI12	VATH_HUMAN	No assigned EC number	0.5230	0.9508	0.8819	yes	N/A
Q84ZC0	VATH_ORYSJ	No assigned EC number	0.2910	0.8906	0.8827	yes	N/A
O14265	VATH_SCHPO	No assigned EC number	0.2987	0.8660	0.8622	yes	N/A
Q8MML6	VATH_DICDI	No assigned EC number	0.3199	0.8705	0.8764	yes	N/A
Q9V3J1	VATH_DROME	No assigned EC number	0.6780	0.9531	0.9123	yes	N/A
Q22494	VATH2_CAEEL	No assigned EC number	0.5156	0.9598	0.9148	yes	N/A
Q8BVE3	VATH_MOUSE	No assigned EC number	0.5274	0.9508	0.8819	yes	N/A
Q619W9	VATH2_CAEBR	No assigned EC number	0.5112	0.9598	0.9148	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		448
cd00256		429	cd00256, VATPase_H, VATPase_H, regulatory vacuolar	0.0
pfam03224		312	pfam03224, V-ATPase_H_N, V-ATPase subunit H	7e-93
pfam11698		119	pfam11698, V-ATPase_H_C, V-ATPase subunit H	1e-63
COG5231		432	COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subu	3e-51

>gnl\|CDD\|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

 Score =  549 bits (1417), Expect = 0.0
 Identities = 243/431 (56%), Positives = 318/431 (73%), Gaps = 15/431 (3%)

Query: 30  SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTF 89
           S  Q+ A EVR ++ NW +Y +SQMIS+EDY FI   +      + E+L+   G   KTF
Sbjct: 1   SQFQEIAAEVRARKINWQSYMRSQMISEEDYQFIKALEKKRV--KEEILDVLSGQYVKTF 58

Query: 90  LNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFI 149
           +NLL  I KD T++Y+L LIDD+LQED +RV++F + +  K++     F NLLN  D FI
Sbjct: 59  VNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKK-TWEPFFNLLNRQDQFI 117

Query: 150 INMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLK-LANNDYMQSVARCLQMMLRIDEY 208
           ++M+  I+AK+AC+ +  +  SDL++Y  WLK+QL  + NNDY+Q+ ARCLQM+LR+DEY
Sbjct: 118 VHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY 177

Query: 209 RIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL 267
           R AF+  DG+ TL+ +LS     FQ+QYQ IFC+W+LTFNP  A+ + + ++I  L+DIL
Sbjct: 178 RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL 237

Query: 268 SDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317
            +S KEK          NLI K  +  + K   + MVQ KVLK L  LEQRK+DDED+ +
Sbjct: 238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTD 297

Query: 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKS 377
           D++FL E+L+ SVQDLSSFDEYK+E++SGRL WSPVH+S +FWRENA RL+EKNYELLK 
Sbjct: 298 DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKI 357

Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
           LIHLLETS DP++L+VA +DIGEYVRH PRGK V+EQLGGKQ VM+LL+HEDPNVRYEAL
Sbjct: 358 LIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417

Query: 438 LAVQKLMVHNW 448
           LAVQKLMVHNW
Sbjct: 418 LAVQKLMVHNW 428

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. Length = 429

>gnl\|CDD\|217434 pfam03224, V-ATPase_H_N, V-ATPase subunit H	Back alignment and domain information

>gnl\|CDD\|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H	Back alignment and domain information

>gnl\|CDD\|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		448
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	100.0
KOG2759\|consensus		442		100.0
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	100.0
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	100.0
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	100.0
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.28
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.23
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.8
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.74
KOG0166\|consensus		514		98.73
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.56
KOG4224\|consensus		550		98.52
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.47
KOG4224\|consensus		550		98.38
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.36
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.02
KOG4199\|consensus		461		97.95
KOG0166\|consensus		514		97.83
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.69
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.64
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.61
KOG2160\|consensus		342		97.57
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.16
PTZ00429		746	beta-adaptin; Provisional	97.04
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.95
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.95
KOG4500\|consensus		604		96.85
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	96.38
KOG2171\|consensus		1075		96.08
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.99
KOG1060\|consensus		968		95.81
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	95.69
PRK09687		280	putative lyase; Provisional	95.68
KOG2734\|consensus		536		95.19
KOG4199\|consensus		461		95.18
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.04
KOG0946\|consensus		970		94.99
KOG1062\|consensus		866		94.57
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	94.4
KOG1789\|consensus		2235		94.35
KOG2160\|consensus		342		94.32
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.88
KOG2122\|consensus		2195		93.65
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	93.04
PF05536		543	Neurochondrin: Neurochondrin	92.91
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.91
KOG0946\|consensus		970		92.81
KOG1293\|consensus		678		92.74
KOG1048\|consensus		717		92.17
KOG1222\|consensus		791		90.0
PF05536		543	Neurochondrin: Neurochondrin	89.99
KOG2734\|consensus		536		89.7
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.34
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	88.92
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.49
KOG3036\|consensus		293		86.67
cd08323		86	CARD_APAF1 Caspase activation and recruitment doma	86.63
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	86.09
KOG1240\|consensus		1431		85.65
KOG1059\|consensus		877		84.83
PF07539		141	DRIM: Down-regulated in metastasis; InterPro: IPR0	84.78
PRK09687		280	putative lyase; Provisional	83.72
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	83.53
cd08330		82	CARD_ASC_NALP1 Caspase activation and recruitment	83.45
PTZ00429		746	beta-adaptin; Provisional	83.13
KOG4646\|consensus		173		83.09
KOG1048\|consensus		717		82.87
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	82.83
PF09324		86	DUF1981: Domain of unknown function (DUF1981); Int	80.62
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	80.58
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	80.11

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

Probab=100.00  E-value=1.5e-119  Score=932.29  Aligned_cols=416  Identities=58%  Similarity=0.985  Sum_probs=397.9

Q ss_pred             cHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHH
Q psy4828          30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLI  109 (448)
Q Consensus        30 ~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li  109 (448)
                      +|+++++++||+|+|||++|+|||+||++|+++||+||++  ..|.++++.+|+.|+++|+++|++++++|++||+|++|
T Consensus         1 ~~~~~~~~~Ir~r~ipWe~y~ra~~Is~~d~~~ik~~d~~--~~~~~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li   78 (429)
T cd00256           1 SQFQEIAAEVRARKINWQSYMRSQMISEEDYQFIKALEKK--RVKEEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLI   78 (429)
T ss_pred             ChHHHHHHHHHCCCCChHHHHHhCCCCHHHHHHHHHHHhH--HHHHHHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999987  56888889999999999999999999999999999999


Q ss_pred             HHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhc-C
Q psy4828         110 DDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA-N  188 (448)
Q Consensus       110 ~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~-~  188 (448)
                      +||++++|+|+++|++.+. .+++||.||+++|+++|+||+++|+++||.|+++|+...+..+++.|++||+++++++ +
T Consensus        79 ~dll~~~~~~~~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  157 (429)
T cd00256          79 DDMLQEDDTRVKLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITN  157 (429)
T ss_pred             HHHHHhchHHHHHHHHHhh-ccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCC
Confidence            9999999999999999765 4569999999999999999999999999999999988778888999999999999864 4


Q ss_pred             ChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc-chHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHh
Q psy4828         189 NDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL  267 (448)
Q Consensus       189 ~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~il  267 (448)
                      ++++.++++||+.||+.++||..||+++|+++|+++|++.. ++|+||+++||+|+|||++++++.+.++++||.|++++
T Consensus       158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~  237 (429)
T cd00256         158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL  237 (429)
T ss_pred             cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHH
Confidence            77888999999999999999999999999999999997655 99999999999999999999999888899999999999


Q ss_pred             hhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHH
Q psy4828         268 SDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFD  337 (448)
Q Consensus       268 k~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfD  337 (448)
                      +.++|||          |+++++.+.+..+.++..||++|+++++++|++|||+||||.+|+++|.++|++++++|||||
T Consensus       238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD  317 (429)
T cd00256         238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFD  317 (429)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999          999988766555567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCc
Q psy4828         338 EYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG  417 (448)
Q Consensus       338 eY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~  417 (448)
                      ||++||+||+|+|||+|+||+||+||++||+||||+++|+|+++|++|+||+++|||||||||||||||+||.+++++||
T Consensus       318 ~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~  397 (429)
T cd00256         318 EYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG  397 (429)
T ss_pred             HHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828         418 KQLVMQLLSHEDPNVRYEALLAVQKLMVHNW  448 (448)
Q Consensus       418 K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W  448 (448)
                      |++||+||+|+|++||||||+||||||+|||
T Consensus       398 K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w  428 (429)
T cd00256         398 KQRVMRLLNHEDPNVRYEALLAVQKLMVHNW  428 (429)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2759\|consensus	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG4224\|consensus	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG4224\|consensus	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG4199\|consensus	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2160\|consensus	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG4500\|consensus	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1060\|consensus	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2734\|consensus	Back alignment and domain information

>KOG4199\|consensus	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>KOG1062\|consensus	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1789\|consensus	Back alignment and domain information

>KOG2160\|consensus	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>KOG2122\|consensus	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>KOG1293\|consensus	Back alignment and domain information

>KOG1048\|consensus	Back alignment and domain information

>KOG1222\|consensus	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG2734\|consensus	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG3036\|consensus	Back alignment and domain information

>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1240\|consensus	Back alignment and domain information

>KOG1059\|consensus	Back alignment and domain information

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG4646\|consensus	Back alignment and domain information

>KOG1048\|consensus	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		448
1ho8_A		480	Crystal Structure Of The Regulatory Subunit H Of Th		3e-27

>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The V-Type Atpase Of Saccharomyces Cerevisiae Length = 480

Back alignment and structure

Iteration: 1

Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 38/252 (15%) Query: 226 SGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPAL 285 S + Q+QY + +W+LTFNP A+ + V L+D L D +K + K T Sbjct: 237 SNHLGIQLQYHSLLLIWLLTFNPVFANEL----VQKYLSDFL-DLLK----LVKITIKEK 287 Query: 286 AKENCIAMV----------QSKVLKQLSIL----------EQRKFDDEDIVEDVQFLNEK 325 CI+++ KV+KQL +L +RK+ DE++ +D+ L E Sbjct: 288 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEI 347 Query: 326 LQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE-- 383 L+ Q+L+SFDEY E+ S L WSP H FW +N + NY++ + LI LL+ Sbjct: 348 LENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 Query: 384 -------TSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEA 436 ++ +++ VA DI V P V+++ GGK +M+LL+H D V+YEA Sbjct: 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEA 467 Query: 437 LLAVQKLMVHNW 448 L A Q ++ + + Sbjct: 468 LKATQAIIGYTF 479

PyMOL of 1ho8

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		448
1ho8_A		480	Vacuolar ATP synthase subunit H; heat repeat, hydr	1e-141
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-07
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-04
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	3e-05
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-05
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	8e-05
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-04
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	6e-04
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	5e-04
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	6e-04
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	7e-04

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480	Back alignment and structure

 Score =  411 bits (1056), Expect = e-141
 Identities = 98/477 (20%), Positives = 193/477 (40%), Gaps = 52/477 (10%)

Query: 22  KTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNER 81
            T ++  ++   +  + +R++   W+   +S+ +S+ D       ++    K        
Sbjct: 5   ATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSS 64

Query: 82  RGH----------AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKR 131
             +               ++LL     +   + +  LI ++L  D+   +  K + Q   
Sbjct: 65  SNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVK-FFQEDP 123

Query: 132 EPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDY 191
           + +   F   L G    ++     +++ +    +  +   +       L + L+      
Sbjct: 124 KQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMD 183

Query: 192 MQSVA-RCLQMMLRIDEYRIAF------------------INVDGIRTLLSVLSGRVNFQ 232
              V  R LQ +  I EYR                      +      +++  S  +  Q
Sbjct: 184 TCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQ 243

Query: 233 IQYQLIFCLWVLTFNPKLADRMNK--FNVIPTLADILSDSVKEK----------NLIEKP 280
           +QY  +  +W+LTFNP  A+ + +   +    L  ++  ++KEK                
Sbjct: 244 LQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303

Query: 281 TEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYK 340
            +        + ++    L  +  L +RK+ DE++ +D+  L E L+   Q+L+SFDEY 
Sbjct: 304 VKQHKKVIKQLLLLG-NALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 362

Query: 341 TEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE---------TSRDPLVL 391
            E+ S  L WSP H    FW +N     + NY++ + LI LL+           ++ +++
Sbjct: 363 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 422

Query: 392 SVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
            VA  DI   V   P    V+++ GGK  +M+LL+H D  V+YEAL A Q ++ + +
Sbjct: 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 479

PyMOL of 1ho8

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		448
1ho8_A		480	Vacuolar ATP synthase subunit H; heat repeat, hydr	100.0
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.71
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.65
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.61
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.6
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.6
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.59
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.59
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.59
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.54
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.52
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.5
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.49
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.48
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	99.47
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.47
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.46
3nmz_A		458	APC variant protein; protein-protein complex, arma	99.44
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	99.44
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.44
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.43
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.43
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.42
3nmz_A		458	APC variant protein; protein-protein complex, arma	99.33
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.3
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	99.28
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.26
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.23
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	99.18
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	99.12
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	99.08
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	99.0
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.94
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	98.77
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	98.58
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	98.5
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.41
3grl_A		651	General vesicular transport factor P115; vesicle t	98.41
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	98.29
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.15
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.12
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.0
3grl_A		651	General vesicular transport factor P115; vesicle t	97.69
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.63
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.59
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.58
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.47
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.42
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.39
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.22
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	97.14
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.1
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.1
1qgr_A		876	Protein (importin beta subunit); transport recepto	96.97
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.59
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	96.47
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.36
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	95.89
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.88
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.61
1qgr_A		876	Protein (importin beta subunit); transport recepto	95.42
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.28
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.36
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	92.79
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.36
2fv2_A		268	RCD1 required for cell differentiation1 homolog; a	92.27
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	92.05
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	91.51
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	90.45
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	90.18
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	90.03
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	89.9
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	89.35
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	89.33
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	89.0
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.63
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.42
3dad_A		339	FH1/FH2 domain-containing protein 1; formin, FHOD1	82.76
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	80.83

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9	Back alignment and structure

Probab=100.00  E-value=2.8e-107  Score=847.60  Aligned_cols=417  Identities=25%  Similarity=0.422  Sum_probs=365.3

Q ss_pred             ccccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH-HHHHH----------HhhchhHHHHHHHH
Q psy4828          23 TDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA-KRAEM----------LNERRGHAAKTFLN   91 (448)
Q Consensus        23 ~~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~~~----------~~~~~~~~~~~~l~   91 (448)
                      .-..++++||++.+++||+|+|||++|+|||+||++|+++||+||+.+.+ .+.+.          +..+ +.|+++|++
T Consensus         6 ~~~~ld~t~l~~~~~~Ir~R~IpWd~~~ra~~Is~~d~~~ik~~dk~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~   84 (480)
T 1ho8_A            6 TKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVN-GKTLIPLIH   84 (480)
T ss_dssp             CCCSCSCHHHHHHHHHHHHSCCCHHHHHHTTSSCHHHHHHHHHHHHHHHCC-----------------CS-STTHHHHHH
T ss_pred             ceeeecchHHHHHHHHHhcCCCChHHHHHhCCCCHHHHHHHHHHhcccHHHHHhhhhccchhhhhhhhcC-chHHHHHHH
Confidence            34578999999999999999999999999999999999999999998733 44443          5666 589999999


Q ss_pred             HhcccChhhHHHHHHHHHHHHHhhch---hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC
Q psy4828          92 LLEHISKDSTIQYILVLIDDILQEDR---SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL  168 (448)
Q Consensus        92 lL~~~~~~d~vqyvL~li~dll~~~~---~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~  168 (448)
                      +|++++++|++||+|++|+||++++|   +++++|++.    +..+..||..+++++|+++++.|+.+++.+++.++.  
T Consensus        85 lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~----~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~--  158 (480)
T 1ho8_A           85 LLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED----PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH--  158 (480)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHC----TTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC--
T ss_pred             HHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhC----cccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc--
Confidence            99999999999999999999999999   999999885    334444677777889999999999999999876643  


Q ss_pred             ChhhHHHHHH--HHHHHhhhcC-ChhHHHHHHHHHHhhccchhhHHHHhhcc--hhhHHHhh----------------cc
Q psy4828         169 NPSDLNFYLT--WLKDQLKLAN-NDYMQSVARCLQMMLRIDEYRIAFINVDG--IRTLLSVL----------------SG  227 (448)
Q Consensus       169 ~~~~l~~~l~--~l~~~L~~~~-~~~~~~~~~~l~~lL~~~~~R~~f~~~~g--v~~L~~lL----------------~~  227 (448)
                      +++.++.+++  |+..+|+..+ .+...++++||+.||+.++||..||+++|  +++++.++                ++
T Consensus       159 ~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~  238 (480)
T 1ho8_A          159 NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSN  238 (480)
T ss_dssp             CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------
T ss_pred             cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCC
Confidence            7888999999  9999987532 23334699999999999999999999876  34443322                34


Q ss_pred             CcchHHHHHHHHHHHHhhcChhHHHhhhcCCCH--HHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHH-HH
Q psy4828         228 RVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVI--PTLADILSDSVKEK----------NLIEKPTEPALAKENCIA-MV  294 (448)
Q Consensus       228 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI--~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~-mv  294 (448)
                      ++|+|+||+++||+|+|||++++++.|.+.+++  +.|+++++.++|||          |++++.++..  ...+.+ |+
T Consensus       239 ~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~--~~~~~~~~~  316 (480)
T 1ho8_A          239 HLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH--KKVIKQLLL  316 (480)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH--HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh--hhHHHHHHH
Confidence            568999999999999999999999999776654  88999999999999          9999876432  123444 55


Q ss_pred             hcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHH
Q psy4828         295 QSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYEL  374 (448)
Q Consensus       295 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~l  374 (448)
                      .+++++++++|++|||+||||.+||++|.++|++++++|||||||++||+||+|+|||||+||+||+||++||+||||++
T Consensus       317 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~l  396 (480)
T 1ho8_A          317 LGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI  396 (480)
T ss_dssp             HHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHH
T ss_pred             HccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc---------CCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828         375 LKSLIHLLET---------SRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV  445 (448)
Q Consensus       375 lk~L~~lL~~---------S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  445 (448)
                      +|+|+++|++         |+||+++|||||||||||||||+||.+++++|||++||+||+|+|++||||||+||||+|+
T Consensus       397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999974         5799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy4828         446 HNW  448 (448)
Q Consensus       446 ~~W  448 (448)
                      |||
T Consensus       477 ~~~  479 (480)
T 1ho8_A          477 YTF  479 (480)
T ss_dssp             HSC
T ss_pred             hcC
Confidence            999

PyMOL of 1ho8

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		448
d1ho8a_		477	a.118.1.9 (A:) Regulatory subunit H of the V-type	1e-147
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-06
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-04

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 477	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  425 bits (1093), Expect = e-147
 Identities = 100/476 (21%), Positives = 194/476 (40%), Gaps = 52/476 (10%)

Query: 23  TDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAK--------- 73
           T ++  ++   +  + +R++   W+   +S+ +S+ D       ++    K         
Sbjct: 3   TKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSS 62

Query: 74  -RAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKRE 132
             A    +  G      ++LL     +   + +  LI ++L  D+   +   ++ Q   +
Sbjct: 63  NNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYG-DDTVKFFQEDPK 121

Query: 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL-KLANNDY 191
            +   F   L G    ++     +++ +    +  +   +       L + L  +   D 
Sbjct: 122 QLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDT 181

Query: 192 MQSVARCLQMMLRIDEYRIAFIN------------------VDGIRTLLSVLSGRVNFQI 233
                R LQ +  I EYR                             +++  S  +  Q+
Sbjct: 182 CYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQL 241

Query: 234 QYQLIFCLWVLTFNPKLADRMNK--FNVIPTLADILSDSVKEK----------NLIEKPT 281
           QY  +  +W+LTFNP  A+ + +   +    L  ++  ++KEK                 
Sbjct: 242 QYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRV 301

Query: 282 EPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKT 341
           +    K     ++    L  +  L +RK+ DE++ +D+  L E L+   Q+L+SFDEY  
Sbjct: 302 KQH-KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA 360

Query: 342 EVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE---------TSRDPLVLS 392
           E+ S  L WSP H    FW +N     + NY++ + LI LL+           ++ +++ 
Sbjct: 361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQ 420

Query: 393 VASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
           VA  DI   V   P    V+++ GGK  +M+LL+H D  V+YEAL A Q ++ + +
Sbjct: 421 VALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 476

PyMOL of d1ho8a_

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		448
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.57
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.47
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.4
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.34
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.86
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.48
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.59
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.3
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.11
d1b3ua_		588	Constant regulatory domain of protein phosphatase	96.87
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.64
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.91
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.79
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.75
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	94.02
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.9
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.88
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	92.9
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	91.3
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	89.28
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.57
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	80.21

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-113  Score=887.39  Aligned_cols=426  Identities=24%  Similarity=0.393  Sum_probs=375.0

Q ss_pred             CcccccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCCh-HHHHHHHhhc---------hhHHHHHHH
Q psy4828          21 DKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASS-AKRAEMLNER---------RGHAAKTFL   90 (448)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~-~~r~~~~~~~---------~~~~~~~~l   90 (448)
                      |+..++++||||++.+++||+|+|||+||+|||+||++|+++||+||+++. ++|.+.++.+         |++|+++|+
T Consensus         1 g~~~~~~dst~l~~~~~~IR~R~IpWe~~~Rs~~Ite~dl~~Ik~~dk~~~~~~r~~~l~~~~~~~~~~~~g~~~~~~~l   80 (477)
T d1ho8a_           1 GATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLI   80 (477)
T ss_dssp             CCCCCSCSCHHHHHHHHHHHHSCCCHHHHHHTTSSCHHHHHHHHHHHHHHHCC-----------------CSSTTHHHHH
T ss_pred             CCCceeeccHHHHHHHHHHhCCCCCcHHHHHhCCCCHHHHHHHHHHhccchHHHHHHHhhccchhhhhhccccHHHHHHH
Confidence            566788999999999999999999999999999999999999999998753 3676666654         678999999


Q ss_pred             HHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCC-
Q psy4828          91 NLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLN-  169 (448)
Q Consensus        91 ~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~-  169 (448)
                      ++|++++++|++||+|++|+||++++|.+..+| +....++..||.||.++|+++|+|+.+.|+++++.+++++....+ 
T Consensus        81 ~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~-~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~  159 (477)
T d1ho8a_          81 HLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTV-KFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKL  159 (477)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHH-HHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHH
T ss_pred             HHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHH-HHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccccccch
Confidence            999999999999999999999999999777744 444557789999999999999999999999999999998865444 


Q ss_pred             hhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcc--hhhHHHhh----------------ccCcch
Q psy4828         170 PSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDG--IRTLLSVL----------------SGRVNF  231 (448)
Q Consensus       170 ~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~g--v~~L~~lL----------------~~~~~~  231 (448)
                      .+.+.++++++.....+++.++..++++|+|++|+.++||..||++++  +.+++++|                ++++|+
T Consensus       160 ~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~  239 (477)
T d1ho8a_         160 VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI  239 (477)
T ss_dssp             HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHH
T ss_pred             HHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccH
Confidence            344566666666655555667777899999999999999999998764  45555544                246799


Q ss_pred             HHHHHHHHHHHHhhcChhHHHhhhcC--CCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchH
Q psy4828         232 QIQYQLIFCLWVLTFNPKLADRMNKF--NVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVL  299 (448)
Q Consensus       232 Ql~Y~~ll~lWlLSF~~~~~~~l~~~--~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l  299 (448)
                      |+||+++||+|+|||++++++.|.+.  ++|+.|+++++.++|||          |++++..+.. +...+..|+.++++
T Consensus       240 Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~-~~~~~~~~v~~~~l  318 (477)
T d1ho8a_         240 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH-KKVIKQLLLLGNAL  318 (477)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH-HHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHcchh
Confidence            99999999999999999999999653  67999999999999999          9998766544 23355679999999


Q ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHH
Q psy4828         300 KQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLI  379 (448)
Q Consensus       300 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~  379 (448)
                      |++++|++|||+||||.+||++|.++|++++++|||||||++||+||+|+|||||+||+||+||++||+||||+++|+|+
T Consensus       319 ~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~  398 (477)
T d1ho8a_         319 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI  398 (477)
T ss_dssp             HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc---------cCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828         380 HLLE---------TSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW  448 (448)
Q Consensus       380 ~lL~---------~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W  448 (448)
                      ++|+         +|+||+|+|||||||||||||||+||.+++++|||++||+||+|+||+||||||+||||+|+|||
T Consensus       399 ~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~nw  476 (477)
T d1ho8a_         399 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF  476 (477)
T ss_dssp             HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            9995         36799999999999999999999999999999999999999999999999999999999999999

PyMOL of d1ho8a_

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure