Psyllid ID: psy4850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHcccccccccEEEcccEEEEcccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHcccHHHHccccHcEEEEccccEccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK
Flexible Loop (DISEMBL)
MVDLVTtefndlekdevniisgalelrrKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK
Low Complexity Region (SEG)
MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK
Disordered region (IsUnstruct)
*******EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVS********
Disordered Region (DISOPRED)
**********DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS***
Disordered Region (DISEMBL)
MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVS********
Disordered Region (DISPRO)
*VDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q6P4Q7	775	Metal transporter CNNM4 O	yes	N/A	0.890	0.073	0.614	3e-13
P0C588	772	Metal transporter CNNM4 O	yes	N/A	0.890	0.073	0.614	4e-13
Q3TWN3	875	Metal transporter CNNM2 O	yes	N/A	0.890	0.065	0.631	4e-13
Q69ZF7	771	Metal transporter CNNM4 O	no	N/A	0.890	0.073	0.614	4e-13
Q5U2P1	875	Metal transporter CNNM2 O	no	N/A	0.890	0.065	0.631	4e-13
Q9H8M5	875	Metal transporter CNNM2 O	no	N/A	0.890	0.065	0.631	5e-13
Q0GA42	951	Metal transporter CNNM1 O	no	N/A	0.828	0.055	0.603	5e-12
Q9NRU3	951	Metal transporter CNNM1 O	no	N/A	0.828	0.055	0.603	5e-12
A0JPA0	769	Metal transporter CNNM4 O	no	N/A	0.890	0.074	0.578	9e-12
Q12296	706	Protein MAM3 OS=Saccharom	yes	N/A	0.781	0.070	0.5	4e-06

>sp|Q6P4Q7|CNNM4_HUMAN Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+N+I GALELR K V D+MT+L+D +M+  DAILDF T+SEIM+S
Sbjct: 347 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMES 403

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.
Homo sapiens (taxid: 9606)

>sp|P0C588|CNNM4_RAT Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+S
Sbjct: 345 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMES 401

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions. May play a role in biomineralization and retinal function.

Rattus norvegicus (taxid: 10116)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

>sp|Q69ZF7|CNNM4_MOUSE Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+S
Sbjct: 344 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMES 400

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.

Mus musculus (taxid: 10090)

>sp|Q5U2P1|CNNM2_RAT Metal transporter CNNM2 OS=Rattus norvegicus GN=Cnnm2 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Rattus norvegicus (taxid: 10116)

>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Homo sapiens (taxid: 9606)

>sp|Q0GA42|CNNM1_MOUSE Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 PE=1 SV=5

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 9   FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           ++DL K+E+NII GALELR K+V +V+T L D +ML  DA+LDF TVSEI++S
Sbjct: 407 YSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRS 459

Probable metal transporter.

Mus musculus (taxid: 10090)

>sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 9   FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           ++DL K+E+NII GALELR K+V +V+T L D +ML  DA+LDF TVSEI++S
Sbjct: 407 YSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRS 459

Probable metal transporter.

Homo sapiens (taxid: 9606)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT  ++ + ++E+NII GALELR K V DVMTK+ED +ML  DA+LDF T+S IM+S
Sbjct: 344 VTEPYSGIVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMES 400

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 12  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           L KDEV IIS  L+L+ K V ++MT +E+V+ +S D ILD +TV +I  S
Sbjct: 236 LTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNS 285

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
328720335	986	PREDICTED: metal transporter CNNM2-like	0.953	0.061	0.836	3e-20
328720337	950	PREDICTED: metal transporter CNNM2-like	0.953	0.064	0.836	3e-20
328720333	931	PREDICTED: metal transporter CNNM2-like	0.953	0.065	0.836	3e-20
307209414	1012	Metal transporter CNNM2 [Harpegnathos sa	0.890	0.056	0.824	5e-20
383860842	944	PREDICTED: metal transporter CNNM2-like	0.890	0.060	0.859	9e-20
307177469	1003	Metal transporter CNNM2 [Camponotus flor	0.890	0.056	0.824	2e-19
332022207	999	Metal transporter CNNM2 [Acromyrmex echi	0.890	0.057	0.842	2e-19
328783660	945	PREDICTED: metal transporter CNNM2-like	0.890	0.060	0.842	3e-19
380016390	985	PREDICTED: LOW QUALITY PROTEIN: metal tr	0.890	0.057	0.842	3e-19
350403868	950	PREDICTED: metal transporter CNNM2-like	0.890	0.06	0.842	5e-19

>gi|328720335|ref|XP_001945496.2| PREDICTED: metal transporter CNNM2-like isoform 1 [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 54/61 (88%)

Query: 1   MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK 60
           +V +   E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMK
Sbjct: 500 LVKMTGDEYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMK 559

Query: 61  S 61
           S
Sbjct: 560 S 560

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720337|ref|XP_003247005.1| PREDICTED: metal transporter CNNM2-like isoform 3 [Acyrthosiphon pisum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 54/61 (88%)

Query: 1   MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK 60
           +V +   E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMK
Sbjct: 500 LVKMTGDEYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMK 559

Query: 61  S 61
           S
Sbjct: 560 S 560

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720333|ref|XP_003247004.1| PREDICTED: metal transporter CNNM2-like isoform 2 [Acyrthosiphon pisum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 54/61 (88%)

Query: 1   MVDLVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK 60
           +V +   E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMK
Sbjct: 500 LVKMTGDEYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMK 559

Query: 61  S 61
           S
Sbjct: 560 S 560

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209414|gb|EFN86431.1| Metal transporter CNNM2 [Harpegnathos saltator]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 55/57 (96%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTTE+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+A+LDFETVSEIMKS
Sbjct: 501 VTTEYNDLEKDEVNIIAGALELRKKTVADVMTRIEDVYMLNYNAVLDFETVSEIMKS 557

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860842|ref|XP_003705897.1| PREDICTED: metal transporter CNNM2-like [Megachile rotundata]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 54/57 (94%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML+YDAILDFETVSEIMKS
Sbjct: 430 VTTGYNDLEKDEVNIIAGALELRKKTVKDVMTKIEDVYMLNYDAILDFETVSEIMKS 486

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177469|gb|EFN66596.1| Metal transporter CNNM2 [Camponotus floridanus]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 54/57 (94%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VT E+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+AILDFETVSEIMKS
Sbjct: 486 VTNEYNDLEKDEVNIIAGALELRKKTVADVMTRIEDVYMLNYNAILDFETVSEIMKS 542

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022207|gb|EGI62522.1| Metal transporter CNNM2 [Acromyrmex echinatior]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 55/57 (96%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTTE+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+AILDFETVSEIMKS
Sbjct: 486 VTTEYNDLEKDEVNIIAGALELRKKTVVDVMTRIEDVYMLNYNAILDFETVSEIMKS 542

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783660|ref|XP_625178.3| PREDICTED: metal transporter CNNM2-like [Apis mellifera]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKS
Sbjct: 430 VTTGYNDLEKDEVNIIAGALELRKKTVADVMTKIEDVYMLDYNAILDFETVSEIMKS 486

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016390|ref|XP_003692168.1| PREDICTED: LOW QUALITY PROTEIN: metal transporter CNNM2-like [Apis florea]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKS
Sbjct: 470 VTTGYNDLEKDEVNIIAGALELRKKTVADVMTKIEDVYMLDYNAILDFETVSEIMKS 526

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403868|ref|XP_003486930.1| PREDICTED: metal transporter CNNM2-like [Bombus impatiens]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 5   VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKS
Sbjct: 432 VTTGYNDLEKDEVNIIAGALELRKKTVKDVMTKIEDVYMLDYNAILDFETVSEIMKS 488

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
FB|FBgn0262124	834	uex "unextended" [Drosophila m	0.890	0.068	0.719	2.3e-15
ZFIN|ZDB-GENE-050208-36	811	cnnm2a "cyclin M2a" [Danio rer	0.890	0.070	0.666	8.3e-13
UNIPROTKB|Q6P4Q7	775	CNNM4 "Metal transporter CNNM4	0.890	0.073	0.614	1.6e-12
UNIPROTKB|F1ND49	598	CNNM2 "Uncharacterized protein	0.890	0.095	0.614	2.3e-12
MGI|MGI:2151060	771	Cnnm4 "cyclin M4" [Mus musculu	0.890	0.073	0.614	2.6e-12
RGD|1305571	772	Cnnm4 "cyclin M4" [Rattus norv	0.890	0.073	0.614	2.6e-12
UNIPROTKB|F1S849	827	CNNM2 "Uncharacterized protein	0.890	0.068	0.631	3.7e-12
UNIPROTKB|E1BIL3	853	CNNM2 "Uncharacterized protein	0.890	0.066	0.631	3.9e-12
UNIPROTKB|E2RJ19	875	CNNM2 "Uncharacterized protein	0.890	0.065	0.631	4e-12
UNIPROTKB|Q9H8M5	875	CNNM2 "Metal transporter CNNM2	0.890	0.065	0.631	4e-12

FB|FBgn0262124 uex "unextended" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT + NDL+K+EVNIISGALELR+K V DVMT + D +MLS DA+LDFETVSEIM S
Sbjct:   350 VTNDVNDLDKNEVNIISGALELRKKTVADVMTHINDAFMLSLDALLDFETVSEIMNS 406

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006873 "cellular ion homeostasis" evidence=ISS

ZFIN|ZDB-GENE-050208-36 cnnm2a "cyclin M2a" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M+S DAILDF T+SEIM+S
Sbjct:   363 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMISGDAILDFATMSEIMES 419

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6P4Q7 CNNM4 "Metal transporter CNNM4" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+N+I GALELR K V D+MT+L+D +M+  DAILDF T+SEIM+S
Sbjct:   347 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMES 403

GO:0006811 "ion transport" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1ND49 CNNM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +A+LDF T+SEIM+S
Sbjct:   143 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMIAAEAVLDFNTMSEIMES 199

GO:0010960 "magnesium ion homeostasis" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

MGI|MGI:2151060 Cnnm4 "cyclin M4" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+S
Sbjct:   344 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMES 400

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

RGD|1305571 Cnnm4 "cyclin M4" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+S
Sbjct:   345 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMES 401

GO:0005886 "plasma membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|F1S849 CNNM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IEA

UNIPROTKB|E1BIL3 CNNM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IEA

UNIPROTKB|E2RJ19 CNNM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IEA

UNIPROTKB|Q9H8M5 CNNM2 "Metal transporter CNNM2" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query:     5 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS 61
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+S
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMES 476

GO:0016021 "integral to membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P4Q7	CNNM4_HUMAN	No assigned EC number	0.6140	0.8906	0.0735	yes	N/A
Q3TWN3	CNNM2_MOUSE	No assigned EC number	0.6315	0.8906	0.0651	yes	N/A
P0C588	CNNM4_RAT	No assigned EC number	0.6140	0.8906	0.0738	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	3e-04

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILD 51
           LE++E  +I+  L+L  + V ++MT   D+  L     ++
Sbjct: 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE 228

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.53
PRK11573	413	hypothetical protein; Provisional	99.52
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.47
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.42
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.35
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.13
KOG2118|consensus	498		98.4
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.07
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	95.91
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.99
COG4109	432	Predicted transcriptional regulator containing CBS	93.04
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	87.98
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	87.3
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	86.44
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	84.51
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	84.5
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	83.31
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	81.68
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	81.58
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	81.39
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	81.21
PLN02274	505	inosine-5'-monophosphate dehydrogenase	80.89

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.53  E-value=1e-14  Score=101.43  Aligned_cols=58  Identities=26%  Similarity=0.413  Sum_probs=55.4

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+.|.++++|++|++|+|+|++++|++|||||++|++++.+.+.+ ++++.+.++|||
T Consensus       183 ~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~S  240 (429)
T COG1253         183 SAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHS  240 (429)
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCC
Confidence            4578999999999999999999999999999999999999999998 799999999998

>PRK11573 hypothetical protein; Provisional

Probab=99.52  E-value=8.2e-15  Score=101.87  Aligned_cols=54  Identities=11%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.++++|++|++|+|+|++++|+||||||.+|++++.+.+++ ++++.+.++|||
T Consensus       168 ~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~S  221 (413)
T PRK11573        168 SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHG  221 (413)
T ss_pred             hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCc
Confidence            369999999999999999999999999999999999999998 799999999998

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.47  E-value=4.9e-14  Score=97.79  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=52.5

Q ss_pred             cccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           7 TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         7 ~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +++| ++++|++|++|+|+|++++|+||||||.++++++.+.+++ ++++.+.++|||
T Consensus       170 ~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~s  225 (408)
T TIGR03520       170 DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYS  225 (408)
T ss_pred             hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCC
Confidence            4445 6899999999999999999999999999999999999998 799999999998

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.42  E-value=1.9e-13  Score=91.59  Aligned_cols=58  Identities=19%  Similarity=0.384  Sum_probs=55.2

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.++|.|+++|++||.|+|+|++++|++||+||.++++++.+.+++ ++++.+.++|||
T Consensus        44 ~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~~~s  101 (292)
T PRK15094         44 SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHS  101 (292)
T ss_pred             HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhcCCc
Confidence            3568999999999999999999999999999999999999999999 799999999987

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.35  E-value=2.6e-13  Score=90.12  Aligned_cols=58  Identities=19%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++.++.++.+.+.||.|++++++++|+|||+||++|++|..+.+++ +++..+.+++||
T Consensus        44 se~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaHS  101 (293)
T COG4535          44 SEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHS  101 (293)
T ss_pred             hhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhccc
Confidence            4778899999999999999999999999999999999999999999 799999999998

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.13  E-value=3.5e-11  Score=83.78  Aligned_cols=57  Identities=19%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             cccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           7 TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         7 ~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+|...+.+++||.|+|+|.+.+|+||||||.+|.+++.+.+++ ++++++..+.|+
T Consensus       178 ~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~Ht  234 (423)
T COG4536         178 GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHT  234 (423)
T ss_pred             hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCC
Confidence            566777777899999999999999999999999999999999999 799999999885

>KOG2118|consensus

Probab=98.40  E-value=1e-07  Score=68.19  Aligned_cols=55  Identities=53%  Similarity=0.745  Sum_probs=52.8

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.+..++..++.|+++|.++.|++||||..++|+++.+..++.+.+..+.++|||
T Consensus       185 g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~s  239 (498)
T KOG2118|consen  185 GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYS  239 (498)
T ss_pred             CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcc
Confidence            6689999999999999999999999999999999999999998899999999997

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.07  E-value=0.00072  Score=47.70  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHh
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK   60 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~   60 (64)
                      +.+++++++.+++++++.+.+|+++|+  .++.+++.+.++. ++++.+.+
T Consensus       112 ~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~-eal~~l~~  159 (449)
T TIGR00400       112 ASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG-KALDYIRR  159 (449)
T ss_pred             HcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH-HHHHHHHh
Confidence            468999999999999999999999998  5799999999999 79998875

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PF00571 CBS: CBS domain CBS domain web page

Probab=95.91  E-value=0.0027  Score=31.97  Aligned_cols=31  Identities=32%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             ecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          31 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        31 v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |+++|+|  +...++.+.++. ++++.+.+.+++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~   31 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGIS   31 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSS
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCc
Confidence            5789999  999999999999 799999998874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=93.99  E-value=0.079  Score=37.63  Aligned_cols=50  Identities=6%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             cccCCCC-----HHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           7 TEFNDLE-----KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         7 ~~~g~l~-----~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +..|.|+     +++.+++++++++.+..++       ++++++.+.++. ++++.+.+++||
T Consensus        58 gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~-------~~vtl~~~~tv~-eal~~m~~~~~s  112 (450)
T TIGR01302        58 GGIGVIHRNMSIEEQAEQVKRVKRAENGIIS-------DPVTISPETTVA-DVLELMERKGIS  112 (450)
T ss_pred             CCCceeecCCCHHHHHHHHhhhccccCceec-------CceEeCCCCCHH-HHHHHHHHcCCC
Confidence            3466777     4899999999988876443       678999999999 799999988875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=93.04  E-value=0.055  Score=38.43  Aligned_cols=46  Identities=26%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             HHHHhhh-----cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          18 NIISGAL-----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        18 ~ml~~~l-----~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .||.+|+     .=.=.+|.|||+|..+-..|..+.+++ ++.+...+.|||
T Consensus       172 tmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~s  222 (432)
T COG4109         172 TMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHS  222 (432)
T ss_pred             HHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCC
Confidence            4555544     334468999999999999999999999 799999999997

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=87.98  E-value=0.29  Score=32.82  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ...+|+++|++..++..++.+.++. ++++.+.++++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~  235 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNL  235 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCC
Confidence            6678999999877999999999999 79998877664

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=87.30  E-value=0.51  Score=26.04  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +.++.++|.|......++.+.++. ++++.+.+++.
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~   90 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGL   90 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCC
Confidence            567999999877778999999998 79999988764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=86.44  E-value=0.68  Score=25.26  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             CCCCHHH-HHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          10 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        10 g~l~~~e-~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      |.++... .+.+.+.......++.++|.|.  +..++.+.++. ++++.+.+++.
T Consensus        39 G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~   90 (114)
T cd04604          39 GIFTDGDLRRALEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENKI   90 (114)
T ss_pred             EEechHHHHHHHhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcCC
Confidence            3455433 4455555555667899999874  56789999999 79999887664

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=84.51  E-value=1.6  Score=31.50  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          11 DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        11 ~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      .++++++..++..+...+-+|.-+|++  +.++++.+.+.. +++..+++.+
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~  162 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERA  162 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhc
Confidence            478899999999999999999999996  789999999999 7999998765

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=84.50  E-value=0.73  Score=33.49  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+.+|+++|+|..++++++.+.++. ++++.+.+++.
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i  194 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKL  194 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCC
Confidence            45678999999988899999999999 79999888764

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=83.31  E-value=1.1  Score=25.40  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             cCCCCHHHHHHHHhhhccc------C--eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850           9 FNDLEKDEVNIISGALELR------R--KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus         9 ~g~l~~~e~~ml~~~l~~~------~--~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .|...++ .+.+..-|.+.      +  .+|+++|.+  ++..++.+.++. ++++.+.+.++
T Consensus        31 ~g~~n~e-~~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~   89 (113)
T cd04597          31 LGEPNPQ-TRYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLR-EALNLMHEHNI   89 (113)
T ss_pred             cCCCCHH-HHHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCC
Confidence            3444444 45555555532      2  679999986  677889999998 79999887765

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=81.68  E-value=1  Score=25.08  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +...++.++|+.-..+..++.++++. ++++.+.++++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~   91 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQV   91 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCC
Confidence            45677889997545688999999998 79999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=81.58  E-value=0.8  Score=31.99  Aligned_cols=39  Identities=8%  Similarity=0.077  Sum_probs=32.4

Q ss_pred             HHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          20 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        20 l~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +.++  |+..+|+++|.|  ++..++.+.++. ++++.+.+.++
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~  366 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGF  366 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            5555  888999999976  588999999999 79998887765

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=81.39  E-value=1  Score=24.37  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.++.++|.+  .+..++.+.++. ++++.+.++++
T Consensus        57 ~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~   90 (113)
T cd04623          57 LDTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRF   90 (113)
T ss_pred             cccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCC
Confidence            35689999966  688899999998 79999988775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=81.21  E-value=0.94  Score=32.79  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+..|+++|+|+.+++.++.+.++. ++++.+.+++.
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i  192 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRK  192 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCC
Confidence            3567999999999999999999998 79998887654

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=80.89  E-value=1  Score=32.72  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+|.++|+|...+..++.+.++. ++++.+.+++.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~  196 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKK  196 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCC
Confidence            4677999999988899999999999 79999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.18
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.18
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.07
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.03
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.74
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.71
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.6
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.24
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.13
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.03
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.82
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.62
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.39
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.33
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.28
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.14
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	96.95
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	96.83
4esy_A	170	CBS domain containing membrane protein; structural	96.82
2oux_A	286	Magnesium transporter; 10001B, structural genomics	96.81
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	96.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	96.63
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	96.33
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	96.28
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	96.16
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	95.89
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	95.8
4fry_A	157	Putative signal-transduction protein with CBS DOM;	95.79
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	95.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	95.67
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	95.36
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	94.92
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	94.89
3ddj_A	296	CBS domain-containing protein; structural genomics	94.85
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	94.47
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	94.47
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	94.4
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	94.04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	93.82
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	93.59
1pbj_A	125	Hypothetical protein; structural genomics, domain,	93.31
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	93.09
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	93.01
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	92.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	92.55
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	92.5
4fry_A	157	Putative signal-transduction protein with CBS DOM;	92.15
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	91.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	91.58
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	90.96
1pvm_A	184	Conserved hypothetical protein TA0289; structural	90.91
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	90.84
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	90.16
1vr9_A	213	CBS domain protein/ACT domain protein; structural	89.84
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	89.7
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	89.65
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	89.52
3ddj_A	296	CBS domain-containing protein; structural genomics	89.29
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	89.22
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	89.16
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	88.91
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	88.59
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	88.47
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	87.82
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	87.67
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	87.13
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	87.11
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	87.02
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	86.88
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	86.88
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	86.85
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	86.79
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	86.77
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	86.57
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	86.52
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	86.42
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	86.33
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	86.29
3oco_A	153	Hemolysin-like protein containing CBS domains; str	86.21
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	86.18
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	85.94
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	85.87
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	85.62
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	85.15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	85.11
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	85.04
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	84.66
4esy_A	170	CBS domain containing membrane protein; structural	83.69
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	82.12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	82.0
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	80.74

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.18  E-value=1e-11  Score=75.70  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=51.4

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++++|.|+++|++++.+++.|.+.+|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~   70 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS   70 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCS
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCC
Confidence            4778999999999999999999999999999999999999999999 799999999886

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.18  E-value=1e-11  Score=73.79  Aligned_cols=58  Identities=12%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++++|.++++|++++.++++|++.+|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus        15 ~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~   72 (156)
T 3oi8_A           15 AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHS   72 (156)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCS
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCC
Confidence            4678999999999999999999999999999999999999999999 799999998875

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.07  E-value=3.5e-11  Score=70.49  Aligned_cols=56  Identities=9%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             ccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           8 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         8 ~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++|.|+++|++++.++++|.+.+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   57 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVT   57 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCS
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCC
Confidence            57889999999999999999999999999999999999999999 799999999875

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.03  E-value=3.9e-11  Score=72.36  Aligned_cols=58  Identities=17%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             ccccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +++.|.++++|++++.+++.|.+.+|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus        19 ~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~   76 (172)
T 3lhh_A           19 GSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHS   76 (172)
T ss_dssp             ------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCS
T ss_pred             HHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCC
Confidence            3678889999999999999999999999999999999999999999 799999998875

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.74  E-value=6.2e-10  Score=65.62  Aligned_cols=53  Identities=15%  Similarity=0.368  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          11 DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        11 ~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .++++|++++.++++|++.+|+++|+||.++++++.+.++. ++++.+.++|++
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   54 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYS   54 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCS
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCC
Confidence            36788999999999999999999999999999999999999 799999998875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.71  E-value=1.3e-09  Score=70.28  Aligned_cols=58  Identities=7%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             ccccCCCCHHHHHHHHhhhcc-cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           6 TTEFNDLEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         6 ~~~~g~l~~~e~~ml~~~l~~-~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..+.+.++++|+++++++++| ++++|.|+|+|+.++++++.+.++. ++++.+.++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~   64 (323)
T 3t4n_C            6 QDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIV   64 (323)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCS
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCc
Confidence            356677889999999999999 9999999999999999999999999 799999999875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.60  E-value=1.2e-08  Score=66.05  Aligned_cols=54  Identities=9%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHhhhcccC-eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          10 NDLEKDEVNIISGALELRR-KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~-~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+++++..+++++++|-+ ++|+|+|+||.++++++.+.++. ++++.+.++|||
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~   56 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIV   56 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCS
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCe
Confidence            4577889999999999655 99999999999999999999999 799999999986

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.24  E-value=1.5e-07  Score=56.16  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             HHHHhhhc-ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          18 NIISGALE-LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        18 ~ml~~~l~-~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .||.+.|+ |-.+.++++|||+.++++++.+.++. ++++.+.++|||
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s   49 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYT   49 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSS
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCc
Confidence            46666663 77789999999999999999999999 799999999987

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.13  E-value=2.5e-07  Score=59.83  Aligned_cols=55  Identities=2%  Similarity=0.108  Sum_probs=42.6

Q ss_pred             cccCCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850           7 TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus         7 ~~~g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...|.+.+.+.+.+.+.  |.+++|+|+|+|+.++++++.+.++. ++++.+.++||+
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~   69 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVR   69 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCS
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCc
Confidence            55666777777778887  57899999999999999999999999 799999999885

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.03  E-value=3.3e-06  Score=52.46  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhc
Q psy4850          11 DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS   61 (64)
Q Consensus        11 ~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~   61 (64)
                      .++++++++++++|.|.+.+|+++|+|  ++++++.+.++. ++++.+.+.
T Consensus        36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~   83 (205)
T 3kxr_A           36 QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRI   83 (205)
T ss_dssp             HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHC
T ss_pred             cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhh
Confidence            368999999999999999999999998  799999999999 799998874

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.86  E-value=1.9e-06  Score=49.09  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=31.9

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +|.+++|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~   40 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFS   40 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCS
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCC
Confidence            478999999999999999999999999 799999988875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.85  E-value=3.7e-06  Score=47.92  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .++.+|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   39 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHS   39 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCS
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCC
Confidence            46889999999999999999999999 799999999875

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.82  E-value=5e-06  Score=47.57  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+|+++|+|+.++++++.+.++. ++++.+.++|||
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~   36 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHG   36 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSS
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCC
Confidence            368999999999999999999999 799999999885

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.81  E-value=3.9e-06  Score=48.31  Aligned_cols=37  Identities=11%  Similarity=0.141  Sum_probs=32.9

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++++|+++|+|+.++++++.+.++. ++++.+.++||+
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~   37 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHS   37 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCS
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCC
Confidence            3688999999999999999999999 799999998875

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.62  E-value=1.1e-05  Score=45.67  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++++|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   37 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHS   37 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCS
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCC
Confidence            4688999999999999999999999 799999998875

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.39  E-value=0.00011  Score=50.94  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      +.+++++++.+.+++++.+.+|+++|+|  ++++++.+.++. ++++.+.++|
T Consensus       136 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~~~~  185 (473)
T 2zy9_A          136 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA  185 (473)
T ss_dssp             TSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHHHHG
T ss_pred             hcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHHhcc
Confidence            6789999999999999999999999998  899999999999 7999998864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.28  E-value=0.00013  Score=46.68  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      +.++..++..+.+++.+.+.+|+++|+|  ++++++.+.++. ++++.+.+++
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~  165 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA  165 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHcc
Confidence            4578899999999999999999999998  899999999999 7999998874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.14  E-value=9.5e-05  Score=42.77  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=33.4

Q ss_pred             HHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          20 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        20 l~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..+...|...+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   45 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYS   45 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSS
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCce
Confidence            35566788999999999999999999999998 799999988864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=96.95  E-value=9.8e-05  Score=42.71  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             CHHHHHHHHhhhcccCe---eecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          13 EKDEVNIISGALELRRK---IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        13 ~~~e~~ml~~~l~~~~~---~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+++....+..-.++..   +|+++|+|+.++.+++.+.++. ++++.+.+++++
T Consensus         9 ~~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~   62 (149)
T 3k2v_A            9 TAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLG   62 (149)
T ss_dssp             -----------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSS
T ss_pred             CHHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCc
Confidence            34445555555445444   9999999999999999999999 799999988764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=96.83  E-value=0.00024  Score=41.39  Aligned_cols=45  Identities=20%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             HHHhh-hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          19 IISGA-LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        19 ml~~~-l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |+.+. ..|...+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         3 ~~~~~~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~   48 (159)
T 1yav_A            3 LISLQSDQLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYT   48 (159)
T ss_dssp             --------CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCS
T ss_pred             hHHHHHHHHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCc
Confidence            34443 3688899999999999999999999999 799999888764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=96.82  E-value=0.00045  Score=40.81  Aligned_cols=46  Identities=20%  Similarity=0.315  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          14 KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        14 ~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +..+..+.++  +++.+|+|||++  ++++++.+.++. ++++.+.+++++
T Consensus         5 ~~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~   50 (170)
T 4esy_A            5 QARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIG   50 (170)
T ss_dssp             HHHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCS
T ss_pred             HHHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCe
Confidence            3445566665  468999999986  789999999999 799999999875

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=96.81  E-value=0.00052  Score=44.29  Aligned_cols=49  Identities=14%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhc
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS   61 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~   61 (64)
                      +.++.+++..+.+++.+.+.+|+++|+|  ++++++.+.++. ++++.+.+.
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~  166 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQ  166 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHc
Confidence            3578888999999999999999999997  799999999999 799999886

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=96.70  E-value=0.00013  Score=41.91  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=36.4

Q ss_pred             hhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          23 ALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        23 ~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .-.|...+|+++|+|..++.+++.+.++. ++++.+.+++++
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~   49 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYS   49 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCc
Confidence            44578899999999999999999999999 799999988864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=96.63  E-value=0.00052  Score=39.04  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +..+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~   39 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRIT   39 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCS
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCc
Confidence            4678999999999999999999999 799999988864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=96.33  E-value=0.00054  Score=48.87  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=33.8

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHH-hcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~-~~g~S   64 (64)
                      .+.+|+|+|+||.++.+++.+.++. ++++.+. +++|+
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~  488 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRL  488 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCC
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcc
Confidence            6789999999999999999999999 7999998 68775

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=96.28  E-value=0.0004  Score=39.20  Aligned_cols=34  Identities=9%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             eecceeeec-ccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          30 IVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        30 ~v~dvM~Pr-~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +|+++|+|+ .++.+++.+.++. ++++.+.+++++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~   41 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIG   41 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCC
Confidence            899999998 8999999999999 799999888764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=96.16  E-value=0.0009  Score=39.17  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      -.+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~   38 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVT   38 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCC
Confidence            368999999999999999999999 799999988864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=95.89  E-value=0.0027  Score=35.49  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.+.+|+++|+|  ++.+++.+.++. ++++.+.++|++
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   36 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIG   36 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCS
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCC
Confidence            467899999998  588899999998 799999888764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=95.80  E-value=0.0011  Score=38.80  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=36.5

Q ss_pred             hhhcccCeeecceeeec-ccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          22 GALELRRKIVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        22 ~~l~~~~~~v~dvM~Pr-~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ....+...+|+++|+|+ .++.+++.+.++. ++++.+.+++++
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~   59 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIG   59 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCS
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCC
Confidence            45578889999999997 8899999999999 799999888764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=95.79  E-value=0.0012  Score=38.14  Aligned_cols=35  Identities=6%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             eeecceeeec----ccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKL----EDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr----~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++|+|+|+|+    .++.+++.+.++. ++++.+.+++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~   45 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIG   45 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCC
Confidence            6899999999    8999999999999 799999988764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=95.76  E-value=0.0019  Score=37.24  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             HHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          19 IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        19 ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +..+.+.+...+|+++|+|  ++++++.+.++. ++++.+.+++++
T Consensus         3 l~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~   45 (164)
T 2pfi_A            3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVT   45 (164)
T ss_dssp             -------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCS
T ss_pred             CccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCC
Confidence            3455677889999999998  788899999999 799999988764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=95.67  E-value=0.0035  Score=35.25  Aligned_cols=38  Identities=13%  Similarity=0.067  Sum_probs=32.5

Q ss_pred             hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          24 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        24 l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.|...+|+++|++  ++.+++.+.++. ++++.+.+++++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   39 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVG   39 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCS
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCC
Confidence            56889999999985  788999999999 799999888764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=95.36  E-value=0.0016  Score=38.28  Aligned_cols=38  Identities=11%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             ccCeeecceeeeccc--EEEE--eCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLED--VYML--SYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~--v~~l--~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +...+|+++|+|..+  ++++  +.+.++. ++++.+.+++++
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~   49 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYS   49 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCS
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCC
Confidence            367899999999866  7778  9999999 799999988874

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=94.92  E-value=0.0045  Score=38.41  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+|+++|+| .++.+++.+.++. ++++.+.+++|+
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~  218 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYS  218 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCS
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCc
Confidence            45789999999 8999999999998 799999998875

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=94.89  E-value=0.013  Score=33.94  Aligned_cols=39  Identities=13%  Similarity=0.238  Sum_probs=34.4

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+.+|+++|+|+.++++++.+.++. ++++.+.+++++
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~  115 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQID  115 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCc
Confidence            457889999999999999999999999 799999887753

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=94.85  E-value=0.0081  Score=37.83  Aligned_cols=42  Identities=7%  Similarity=-0.028  Sum_probs=35.3

Q ss_pred             HHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          20 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        20 l~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..+.+.+.+.+|+++|+|  ++++++.+.++. ++++.+.++|++
T Consensus        84 ~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~  125 (296)
T 3ddj_A           84 QGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFG  125 (296)
T ss_dssp             HHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCS
T ss_pred             chhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCC
Confidence            344566778999999998  688999999998 799999988864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=94.47  E-value=0.0093  Score=34.43  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+...+|+++|++  ++.+++.+.++. ++++.+.+++++
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~   48 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVT   48 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTC
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCC
Confidence            3567889999987  799999999999 799999888764

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=94.47  E-value=0.008  Score=37.19  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          24 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        24 l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +...+.+|+++|+|  ++++++.+.++. ++++.+.++|++
T Consensus        79 ~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~  116 (280)
T 3kh5_A           79 LAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVG  116 (280)
T ss_dssp             HHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCS
T ss_pred             hHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCC
Confidence            44557899999998  889999999999 799999998874

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=94.40  E-value=0.01  Score=33.15  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.+.+|+++|+|  ++.+++.+.++. ++++.+.+++++
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   40 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKIS   40 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCc
Confidence            568899999986  688899999998 799999887764

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=94.04  E-value=0.022  Score=32.09  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+|  ++.+++.+.++. ++++.+.+++++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   37 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVG   37 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCS
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCC
Confidence            689999996  789999999999 799999888764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=93.82  E-value=0.012  Score=32.22  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CCCCHHH-HHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          10 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        10 g~l~~~e-~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.++..+ .+.+.+-..+.+.+|+++|.|  .+..++.+.++. ++++.+.+++++
T Consensus        45 G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~   97 (125)
T 1pbj_A           45 GIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVW   97 (125)
T ss_dssp             EEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCS
T ss_pred             EEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCc
Confidence            4555444 233333345678899999997  678999999999 799999888753

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=93.59  E-value=0.023  Score=32.89  Aligned_cols=35  Identities=9%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |...+|+++|++   .++++.+.++. ++++.+.+++++
T Consensus        14 l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~   48 (159)
T 3fv6_A           14 LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVG   48 (159)
T ss_dssp             HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCS
T ss_pred             HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCC
Confidence            567899999996   34899999999 799999888764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=93.31  E-value=0.018  Score=31.51  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+|  ++.+++.+.++. ++++.+.+++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~   33 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKG   33 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCC
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCC
Confidence            368899987  788999999999 799999887764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=93.09  E-value=0.014  Score=31.99  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++|+++|+|  ++.+++.+.++. ++++.+.+++++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   33 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNIN   33 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCC
Confidence            468999997  588899999999 799999888764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=93.01  E-value=0.024  Score=32.84  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=30.0

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+|+++|+|  ++++++.+.++. ++++.+.+++++
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~   37 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIR   37 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCC
Confidence            45789999997  788899999998 799999888764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=92.71  E-value=0.047  Score=30.37  Aligned_cols=36  Identities=14%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ...+.+|+++|+|  .+.+++.+.++. ++++.+.++++
T Consensus        70 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~  105 (135)
T 2rc3_A           70 PVKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRV  105 (135)
T ss_dssp             CGGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTC
T ss_pred             CcccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCC
Confidence            4678899999997  678899999998 79999988775

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=92.55  E-value=0.022  Score=31.62  Aligned_cols=36  Identities=11%  Similarity=0.138  Sum_probs=28.7

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.-++|+++|++  ++.+++.+.++. ++++.+.+++++
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~   40 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIG   40 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCC
Confidence            445789999997  788899999999 799999887764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=92.50  E-value=0.035  Score=35.54  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .....+|+|||++  +++++..+.++. ++.+.+.+++|+
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~   45 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLK   45 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCS
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCC
Confidence            4567899999986  799999999999 799999988874

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=92.15  E-value=0.041  Score=31.46  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..+.+|+++|+|  ++.+++.+.++. ++++.+.+++++
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~  110 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMR  110 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCC
Confidence            568999999997  688999999999 799999988763

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=91.61  E-value=0.048  Score=30.23  Aligned_cols=35  Identities=3%  Similarity=-0.034  Sum_probs=29.7

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+|+++|++.  +..++.+.++. ++++.+.+++++
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~~   37 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGCA   37 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCCc
Confidence            467899999876  77889999999 799999988764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=91.58  E-value=0.11  Score=30.58  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=34.3

Q ss_pred             HHHHHhhh----cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          17 VNIISGAL----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        17 ~~ml~~~l----~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+++....    ...+.+|+++|.|  .+.+++.+.++. ++++.+.++++
T Consensus        59 ~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~  106 (184)
T 1pvm_A           59 RSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGL  106 (184)
T ss_dssp             HHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             HHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCC
Confidence            34454444    3567899999987  678999999999 79999988775

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=90.96  E-value=0.16  Score=28.11  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+.+|+++|.|  ...+++.+.++. ++++.+.++++
T Consensus        69 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~  103 (138)
T 2yzi_A           69 PYDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRI  103 (138)
T ss_dssp             CTTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTC
T ss_pred             cccCCHHHHhhC--CCeEECCCCcHH-HHHHHHHhcCC
Confidence            457899999987  678999999999 79999988775

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=90.91  E-value=0.067  Score=31.59  Aligned_cols=33  Identities=9%  Similarity=0.163  Sum_probs=29.1

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|++  ++++++.+.++. ++++.+.+++++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~   41 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLY   41 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCC
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCC
Confidence            789999984  799999999999 799999888764

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=90.84  E-value=0.049  Score=37.37  Aligned_cols=43  Identities=7%  Similarity=0.101  Sum_probs=36.8

Q ss_pred             HHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          14 KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        14 ~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +++++++.+++++     +++|+|  ++++++.+.++. ++++.+.+++++
T Consensus        80 e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~  122 (491)
T 1zfj_A           80 TEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRIS  122 (491)
T ss_dssp             HHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCCC
Confidence            6778899988876     679997  889999999998 799999988774

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=90.16  E-value=0.076  Score=29.86  Aligned_cols=34  Identities=9%  Similarity=0.048  Sum_probs=29.0

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+.+++++|.|   +.+++.+.++. ++++.+.+++.
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~  100 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHN  100 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTC
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCC
Confidence            457789999976   78999999998 79999988764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=89.84  E-value=0.057  Score=33.01  Aligned_cols=34  Identities=3%  Similarity=0.062  Sum_probs=29.0

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+|+++|+|  ++++++.+.++. ++++.+.+++++
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~  104 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEP  104 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCS
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCC
Confidence            3469999998  788999999999 799999988764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=89.70  E-value=0.11  Score=28.17  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+++++|.|  .+..++.+.++. ++++.+.+++++
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~   94 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNIS   94 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCC
Confidence            45589999987  678899999999 799999887753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=89.65  E-value=0.082  Score=36.90  Aligned_cols=44  Identities=5%  Similarity=-0.007  Sum_probs=36.2

Q ss_pred             CHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          13 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        13 ~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+++.+++.++     ++++++|+  .++++++.+.++. ++++.+.+++||
T Consensus        78 ~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~-ea~~~m~~~~~s  121 (496)
T 4fxs_A           78 IEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA-DVMELTHYHGFA  121 (496)
T ss_dssp             HHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH-HHHHHHTSSCCC
T ss_pred             HHHHHHHHHhc-----cccccccc--cCceEECCCCCHH-HHHHHHHHcCCc
Confidence            46778899998     66788998  6889999999999 799999999886

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=89.52  E-value=0.11  Score=29.75  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ...+.+|+++|+|   +.+++.+.++. ++++.+.++++
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~  126 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNI  126 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCC
Confidence            3567899999998   78999999999 79999988775

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=89.29  E-value=0.085  Score=33.06  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          24 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        24 l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ......+|+|+|++  ++.+++.+.++. ++++.+.+.++
T Consensus        15 ~~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~   51 (296)
T 3ddj_A           15 LYFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGI   51 (296)
T ss_dssp             CTTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGC
T ss_pred             hhhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCC
Confidence            35667899999998  789999999999 79999888765

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=89.22  E-value=0.087  Score=29.94  Aligned_cols=52  Identities=10%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             CCCCHHH-HHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          10 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        10 g~l~~~e-~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.++..+ .+.+..-..+.+.+|+++|.|.  +..++.+.++. ++++.+.+++++
T Consensus        75 Givt~~dl~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~  127 (149)
T 3k2v_A           75 GIFTDGDLRRVFDTGVDMRDASIADVMTRG--GIRIRPGTLAV-DALNLMQSRHIT  127 (149)
T ss_dssp             EEEEHHHHHHHHCSSSCCTTCBHHHHSEES--CCEECTTCBHH-HHHHHHHHHTCS
T ss_pred             EEecHHHHHHHHhcCCCcccCcHHHHcCCC--CeEECCCCCHH-HHHHHHHHcCCC
Confidence            4454433 2223333345788999999875  57899999998 799999988763

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=89.16  E-value=0.093  Score=29.37  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .....+|+++|.|  .+++++.+.++. ++++.+.+++++
T Consensus        81 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~  117 (152)
T 4gqw_A           81 KTNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYR  117 (152)
T ss_dssp             ---CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCC
T ss_pred             HhccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCC
Confidence            3456889999998  567899999999 799999988763

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=88.91  E-value=0.52  Score=27.44  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=32.3

Q ss_pred             HHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          17 VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        17 ~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ++++.....-.+.+|+++|   ..+.+++.+.++. ++++.+.+++.
T Consensus        95 ~dl~~~~~~~~~~~v~~im---~~~~~v~~~~~l~-~a~~~m~~~~~  137 (172)
T 3lhh_A           95 KQLLSESIAGERLELVDLV---KNCNFVPNSLSGM-ELLEHFRTTGS  137 (172)
T ss_dssp             HHHHHHHHTTCCCCGGGGC---BCCEEEETTCCHH-HHHHHHHHHTC
T ss_pred             HHHHHHHhhcCcccHHHHh---cCCeEeCCCCCHH-HHHHHHHHcCC
Confidence            3444444433578999999   4678999999999 79999988764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=88.59  E-value=0.21  Score=27.70  Aligned_cols=33  Identities=9%  Similarity=0.041  Sum_probs=28.1

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.|   ..+++.+.++. ++++.+.+++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~   99 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRN   99 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSC
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCC
Confidence            56789999976   78999999998 79999988764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=88.47  E-value=0.3  Score=28.08  Aligned_cols=35  Identities=23%  Similarity=0.124  Sum_probs=29.9

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+.+|+++|.|  .+.+++.+.++. ++++.+.+++.
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~  109 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKI  109 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTC
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCC
Confidence            457899999996  789999999999 79999988774

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=87.82  E-value=0.29  Score=27.68  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      +...+|+++|.|  .+.+++.+.++. ++++.+.+++
T Consensus        80 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~  113 (157)
T 2emq_A           80 LETMKVEEVMNR--NIPRLRLDDSLM-KAVGLIVNHP  113 (157)
T ss_dssp             GGTCBGGGTCBC--CCCEEETTSBHH-HHHHHHHHSS
T ss_pred             hcCCcHHHHhCC--CCceecCCCcHH-HHHHHHhhCC
Confidence            467899999997  678999999999 7999988765

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=87.67  E-value=0.11  Score=28.90  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             cccCeeecceeeecc----cEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          25 ELRRKIVGDVMTKLE----DVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~----~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ...+.+|+++|++..    ++.+++.+.++. ++++.+.++++
T Consensus        73 ~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~  114 (144)
T 2nyc_A           73 NDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARV  114 (144)
T ss_dssp             --CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTC
T ss_pred             ccCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCC
Confidence            345789999999864    789999999999 79999988765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=87.13  E-value=0.28  Score=28.26  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...+.+|+++|.+  ++.+++.+.++. ++++.+.+++++
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~  125 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFR  125 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCC
Confidence            5678999999994  678899999999 799999988763

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=87.11  E-value=0.27  Score=33.92  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=11.8

Q ss_pred             HHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          14 KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        14 ~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +++++++.+++++.+     +|+  .++++++.+.++. ++++.+.+++||
T Consensus        83 e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~-ea~~~~~~~~~~  125 (486)
T 2cu0_A           83 EEQVEQVKRVKRAER-----LIV--EDVITIAPDETVD-FALFLMEKHGID  125 (486)
T ss_dssp             HHHHHHHHHHHTCC-------------------------------------
T ss_pred             HHHHHHHHhhcchhh-----ccc--cCceEECCCCCHH-HHHHHHHHcCCc
Confidence            577899999998855     687  5899999999999 799999888764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=87.02  E-value=0.15  Score=28.24  Aligned_cols=37  Identities=5%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             cccCeeecc---eeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGD---VMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~d---vM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ++-++++++   +|+  .++++++.+.++. ++++.+.+++++
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~   43 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVS   43 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcc
Confidence            456788999   665  6799999999999 799999888764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=86.88  E-value=0.11  Score=36.03  Aligned_cols=36  Identities=8%  Similarity=0.073  Sum_probs=31.0

Q ss_pred             ccCeeecceeeecccEEEEeCC-CCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYD-AILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~-~~~~~e~l~~i~~~g~S   64 (64)
                      |.+.+|+++|++  ++++++.+ .++. ++++.+.+++++
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~  417 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVD  417 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCS
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCC
Confidence            557899999985  68889999 9999 799999998875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=86.88  E-value=0.21  Score=27.47  Aligned_cols=34  Identities=9%  Similarity=0.101  Sum_probs=29.1

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.|  .+..++.+.++. ++++.+.++++
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~   98 (133)
T 2ef7_A           65 LETKAEEFMTA--SLITIREDSPIT-GALALMRQFNI   98 (133)
T ss_dssp             TTCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTC
T ss_pred             cccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            36789999987  678899999999 79999988775

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=86.85  E-value=0.12  Score=35.88  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+|+++|+|..++++++.+.++. ++++.+.+++.
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i  194 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKL  194 (503)
T ss_dssp             -------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCC
Confidence            3567999999999999999999999 79998887653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=86.79  E-value=0.12  Score=32.01  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=17.3

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+  .++++++.+.++. ++++.+.+++++
T Consensus         1 m~v~~im~--~~~~~v~~~~~~~-~a~~~~~~~~~~   33 (282)
T 2yzq_A            1 MRVKTIMT--QNPVTITLPATRN-YALELFKKYKVR   33 (282)
T ss_dssp             CBHHHHSE--ESCCCEESSCC-------------CC
T ss_pred             CchHHhcc--CCCeEECCCCcHH-HHHHHHHHcCCC
Confidence            36889999  4788899999999 799999888764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=86.77  E-value=0.13  Score=35.86  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      .+.+|+++|+|+.++++++.+.++. ++++.+.+++
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~  179 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENR  179 (490)
T ss_dssp             ------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcC
Confidence            4567999999998999999999999 7998887765

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=86.57  E-value=0.49  Score=26.06  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=28.0

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.|   +.+++.+.++. ++++.+.+++.
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~  102 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRL  102 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTC
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCC
Confidence            47889999965   67999999999 79999988764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=86.52  E-value=0.3  Score=33.98  Aligned_cols=42  Identities=2%  Similarity=0.107  Sum_probs=9.6

Q ss_pred             HHHHHHHHhhhcccCeeecce-eeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          14 KDEVNIISGALELRRKIVGDV-MTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        14 ~~e~~ml~~~l~~~~~~v~dv-M~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +++.+++.++..+      ++ |+|  ++++++.+.++. ++++.+.+++||
T Consensus        87 e~~~~~v~~V~~~------e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s  129 (503)
T 1me8_A           87 ESQAAMVHAVKNF------KAGFVV--SDSNVKPDQTFA-DVLAISQRTTHN  129 (503)
T ss_dssp             HHHHHHHHHHHTT------TC-------------------------------
T ss_pred             HHHHHHHhhhhhc------ccCccc--CCeEECCCCcHH-HHHHHHHHcCce
Confidence            5667777776653      55 998  899999999999 799999988875

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=86.42  E-value=0.14  Score=29.26  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      ....+|+++|.|  .+.+++.+.++. ++++.+.+.+
T Consensus        83 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~  116 (159)
T 1yav_A           83 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG  116 (159)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS
T ss_pred             hccCCHHHhcCC--CCceEcCCCCHH-HHHHHHHhCC
Confidence            568899999998  678899999998 7888877654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=86.33  E-value=0.1  Score=28.78  Aligned_cols=35  Identities=11%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+.+++++|.|  .+.+++.+.++. ++++.+.++++
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~  105 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQV  105 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            457899999987  778899999999 79999988775

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=86.29  E-value=0.4  Score=27.71  Aligned_cols=35  Identities=6%  Similarity=-0.013  Sum_probs=30.0

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ....+|+++|.+  .+.+++.+.++. ++++.+.++++
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~  139 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGL  139 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTC
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCC
Confidence            467899999986  578999999999 79999988775

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=86.21  E-value=0.73  Score=26.12  Aligned_cols=33  Identities=9%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+|+++|   ..+.+++.+.++. ++++.+.+++.
T Consensus        84 ~~~~v~~~m---~~~~~v~~~~~l~-~~~~~m~~~~~  116 (153)
T 3oco_A           84 DKAKISTIM---RDIVSVPENMKVP-DVMEEMSAHRV  116 (153)
T ss_dssp             TTSBGGGTC---BCCEEEETTSBHH-HHHHHHHHTTC
T ss_pred             CCCcHHHHh---CCCeEECCCCCHH-HHHHHHHHcCC
Confidence            488999999   3678999999999 79999988764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=86.18  E-value=0.64  Score=26.08  Aligned_cols=32  Identities=16%  Similarity=0.356  Sum_probs=27.4

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +.+++++|   ....+++.+.++. ++++.+.+++.
T Consensus        87 ~~~v~~~m---~~~~~v~~~~~l~-~~~~~m~~~~~  118 (148)
T 3lv9_A           87 KIELEEIL---RDIIYISENLTID-KALERIRKEKL  118 (148)
T ss_dssp             CCCGGGTC---BCCEEEETTSBHH-HHHHHHHHHTC
T ss_pred             CccHHHhc---CCCeEECCCCCHH-HHHHHHHhcCC
Confidence            78999999   3478999999999 79999988764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=85.94  E-value=0.2  Score=30.74  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=29.2

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..+|+|+|++  ++.+++.+.++. ++++.+.+++++
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~   39 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLK   39 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCS
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCC
Confidence            4689999975  578999999998 799999998864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=85.87  E-value=0.47  Score=26.60  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      ....+|+++|.+  .+..++.+.++. ++++.+.+++
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~  117 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHP  117 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCS
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCC
Confidence            467899999994  578999999998 7999988765

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=85.62  E-value=0.3  Score=30.88  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             cccCeeecceeeecc----cEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          25 ELRRKIVGDVMTKLE----DVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~----~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ...+.+|+++|+++.    .+++++.+.++. ++++.+.+++.
T Consensus       252 ~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~  293 (323)
T 3t4n_C          252 NDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARV  293 (323)
T ss_dssp             HHTTSBHHHHGGGSCTTCCCCEEECTTCBHH-HHHHHHHHSCC
T ss_pred             hhccCCHHHHHhhccccCCCCEEECCCCCHH-HHHHHHHHhCC
Confidence            445779999999987    899999999999 79999998875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=85.15  E-value=0.77  Score=25.48  Aligned_cols=33  Identities=6%  Similarity=0.046  Sum_probs=28.2

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.+  .+.+++.+ ++. ++++.+.+++.
T Consensus        69 ~~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~  101 (141)
T 2rih_A           69 LDGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNI  101 (141)
T ss_dssp             TTSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTC
T ss_pred             CCCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCC
Confidence            36899999987  68899999 998 79999988765

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=85.04  E-value=0.24  Score=28.46  Aligned_cols=33  Identities=6%  Similarity=0.112  Sum_probs=28.4

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.|   .++++.+.++. ++++.+.+++.
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~  133 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRN  133 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCC
Confidence            56789999976   78999999998 79999988764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=84.66  E-value=0.29  Score=26.93  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=27.8

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+++++|.|   ..+++.+.++. ++++.+.+++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~   99 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRY   99 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCC
Confidence            56789999976   47899999998 79999988765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=83.69  E-value=0.16  Score=29.60  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ....+|+++|++  .+++++.+.++. ++++.+.++|+
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~~  136 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHGI  136 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTTC
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcCC
Confidence            456789999986  678899999999 79999998875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=82.12  E-value=0.15  Score=35.63  Aligned_cols=35  Identities=26%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      .+..++++|+|+.++++++.+.++. ++++.+.+++
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~  181 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKAR  181 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcC
Confidence            5678999999999999999999998 6887776654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=82.00  E-value=0.073  Score=37.29  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=26.1

Q ss_pred             ecceeee----cccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          31 VGDVMTK----LEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        31 v~dvM~P----r~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |++||++    +.+.++++.+.++. ++++.+.+++||
T Consensus       109 V~~V~~~~~~m~~d~v~l~~~~tv~-ea~~~m~~~~~s  145 (511)
T 3usb_A          109 VDKVKRSESGVISDPFFLTPEHQVY-DAEHLMGKYRIS  145 (511)
T ss_dssp             HHHHHTSSSCSSSSCCCBCTTSBHH-HHHHHHHHHCCS
T ss_pred             HHHhhccccccccCCEEECCCCCHH-HHHHHHHHcCCc
Confidence            4444444    44789999999999 799999999986

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=80.74  E-value=0.32  Score=33.40  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +.+|+++|+|+.++.+++.+.++. ++++.+.+++.
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~  188 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRI  188 (494)
T ss_dssp             ------------------------------------
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCC
Confidence            467999999988999999999999 79988887663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.12
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.96
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.52
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	96.45
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	96.22
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	96.09
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	95.91
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	95.57
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	95.46
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	95.33
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	95.16
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	95.09
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	94.85
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	93.9
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	92.7
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	92.57
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	92.41
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	92.31
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	92.14
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	90.57
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	89.86
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	89.72
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	88.37
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	88.04
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	88.02
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	87.09
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	86.27
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	85.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	85.29
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	85.04
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	84.59
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	81.52

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=1.9e-07  Score=52.86  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=34.3

Q ss_pred             CeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |++|+++|+|..++++++.+.++. ++++.+.++|||
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s   36 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYT   36 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCS
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCC
Confidence            679999999999999999999999 799999999997

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.96  E-value=6.9e-07  Score=52.27  Aligned_cols=52  Identities=8%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHhhhcc-cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          12 LEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        12 l~~~e~~ml~~~l~~-~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+.++..++.+.+| ..+++.|+|+|..++++++.+.++. +++..+.++|+|
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~   54 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIV   54 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCC
Confidence            346788999999997 9999999999999999999999999 799999999886

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=9.6e-06  Score=46.38  Aligned_cols=38  Identities=3%  Similarity=0.136  Sum_probs=35.2

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |..++|.|+|+|..++++++.+.++. ++++.+.++|++
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~   47 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVR   47 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCS
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCC
Confidence            56889999999999999999999999 799999999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=96.45  E-value=0.00029  Score=39.54  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             cccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          25 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        25 ~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +-.+.+|+|||++  ++.+++.+.++. ++++.+.+++|+
T Consensus         7 ~~~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~   43 (160)
T d2d4za3           7 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLK   43 (160)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCS
T ss_pred             CccceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCC
Confidence            3447799999995  899999999999 799999999885

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.22  E-value=0.00072  Score=37.24  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |.+..|+++|++  ++++++.+.++. ++++.+.+++++
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~   36 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIG   36 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCS
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCc
Confidence            568899999986  799999999999 799999998875

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.09  E-value=0.00037  Score=38.67  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=29.6

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+|  ++++++.+.++. ++++.+.++||+
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~   34 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFR   34 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCC
Confidence            368999999  489999999999 799999999885

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.00054  Score=39.34  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=29.7

Q ss_pred             CeeecceeeecccE----EEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          28 RKIVGDVMTKLEDV----YMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        28 ~~~v~dvM~Pr~~v----~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ...|+|||+|+...    +.++.+.++. ++++.+.+++||
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~   41 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYS   41 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCS
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCC
Confidence            45789999998655    5667788998 799999999986

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.57  E-value=0.00061  Score=37.61  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             eeecceeeec-ccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr-~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +||+|||+.+ .++++++.+.++. ++++.+.++++|
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~   37 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIG   37 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCS
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCC
Confidence            5899999986 4899999999999 799999998875

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.46  E-value=0.0011  Score=36.18  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +||+|+|++  ++++++.+.++. ++++.+.++|++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~   33 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIG   33 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCS
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCC
Confidence            589999986  689999999999 799999998875

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=95.33  E-value=0.0017  Score=36.18  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=29.5

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+|+|+|  +..+++.+.++. ++++.+.+++++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~   34 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIR   34 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCC
Confidence            479999997  789999999999 799999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.16  E-value=0.0017  Score=35.67  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+|  +..+++.++++. ++++.+.+.|++
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~   33 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIG   33 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCC
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCe
Confidence            368999998  678899999999 799999998875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.09  E-value=0.0021  Score=34.94  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             eecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          30 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        30 ~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .|+|+|++  ++++++.++++. ++++.+.++|++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~   32 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKG   32 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCC
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCce
Confidence            47899997  889999999999 799999998875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.85  E-value=0.0023  Score=34.94  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=18.0

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|+|  +.++++.+.++. ++++.+.+++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~   33 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVR   33 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CC
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCc
Confidence            368999998  688999999999 799999988775

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.90  E-value=0.014  Score=31.64  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=28.4

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+|+|++  +.++++.++++. ++++.+.++++|
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~   33 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVG   33 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCS
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCC
Confidence            378999964  789999999999 799999998775

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=92.70  E-value=0.0069  Score=33.93  Aligned_cols=30  Identities=13%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             eecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          30 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        30 ~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      ||..||+|  ++++++.+.++. ++++.+.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~   31 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA   31 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhc
Confidence            68999998  799999999999 7999987765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.57  E-value=0.017  Score=31.57  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=29.1

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      ..|+++|+.  ++.+++.++++. ++++.+.++|++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~   37 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVG   37 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCS
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCc
Confidence            479999974  799999999999 799999998875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.41  E-value=0.018  Score=31.97  Aligned_cols=33  Identities=9%  Similarity=0.163  Sum_probs=28.8

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+|+|+|  ++.+++.+.++. ++++.+.+++++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~   35 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLY   35 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCC
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCc
Confidence            478999985  688999999999 799999988864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.31  E-value=0.01  Score=32.71  Aligned_cols=38  Identities=5%  Similarity=0.090  Sum_probs=32.3

Q ss_pred             ccCeeecceeee-cccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTK-LEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~P-r~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |-.+++++++.+ ..++++++.++++. ++++.+.+++||
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~   44 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVS   44 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCS
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCC
Confidence            456788888876 46799999999999 799999999886

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.14  E-value=0.017  Score=31.98  Aligned_cols=36  Identities=11%  Similarity=0.072  Sum_probs=31.3

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+.+|.++|.  .++++++.++++. ++++.+.+++++
T Consensus         1 ~~~~~v~~~m~--r~v~~v~~~~~l~-~a~~~m~~~~~~   36 (156)
T d2yzqa1           1 YKGVEIEPYYQ--RYVSIVWEGTPLK-AALKALLLSNSM   36 (156)
T ss_dssp             GGGCBSTTTSB--SCCCCEETTSBHH-HHHHHHHTCSSS
T ss_pred             CCCCCHHHHhc--CCCeEECCcCcHH-HHHHHHHHcCCC
Confidence            46788999994  4599999999999 799999999875

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.57  E-value=0.027  Score=31.34  Aligned_cols=34  Identities=3%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             eecceeee-cccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          30 IVGDVMTK-LEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        30 ~v~dvM~P-r~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+++++.+ +.++++++.+.++. ++++.+.+++||
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~   36 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNIS   36 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcc
Confidence            46788887 78999999999999 799999999986

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.86  E-value=0.037  Score=30.24  Aligned_cols=38  Identities=5%  Similarity=0.173  Sum_probs=32.5

Q ss_pred             ccCeeecce-eeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          26 LRRKIVGDV-MTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        26 ~~~~~v~dv-M~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      |-.++++|+ +.+..++++++.++++. ++++.+.++++|
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~   41 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVS   41 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCS
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCc
Confidence            345778887 67789999999999999 799999999886

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=89.72  E-value=0.056  Score=28.93  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=28.3

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      .+|+++|++  ++.+++.+.++. ++++.+.+.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~   33 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTN   33 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSS
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcE
Confidence            368899995  778999999999 799999998875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.37  E-value=0.053  Score=29.00  Aligned_cols=51  Identities=20%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             CCCCHHH-HHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          10 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        10 g~l~~~e-~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      |.++... .+.+..-..+.+..|.++|.+  ++.+++.+.++. ++++.+.+++.
T Consensus        44 Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~   95 (120)
T d1pbja3          44 GIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVV   95 (120)
T ss_dssp             EEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTC
T ss_pred             EEEEeeeccccccccccccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCC
Confidence            4454433 444555557888999999976  678899999999 79999988774

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.04  E-value=0.017  Score=31.15  Aligned_cols=42  Identities=12%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             HHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          20 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        20 l~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.+-.......++++|+|  .+++++.+.++. ++++.+.+++++
T Consensus        58 ~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~   99 (123)
T d1y5ha3          58 LAAGLDPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVR   99 (123)
T ss_dssp             GGGTCCTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCS
T ss_pred             hhcCCCcccceEEEEeec--cceeeeecchHH-HHHHHHHHcCce
Confidence            344455667889999975  778899999999 799999988753

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.02  E-value=0.17  Score=27.24  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      .+.+|+++|.|  ++.+++.++++. ++++.+.+++.
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~  101 (132)
T d2yzia1          68 YDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRI  101 (132)
T ss_dssp             TTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTC
T ss_pred             cceeEeecccc--cccccCcchHHH-HHHHHHHHcCC
Confidence            45789999986  678899999999 79999988775

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.09  E-value=0.05  Score=29.55  Aligned_cols=30  Identities=10%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             eecceeeecccEEEEeCCCCCCHHHHHHHHhcC
Q psy4850          30 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSE   62 (64)
Q Consensus        30 ~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g   62 (64)
                      ||..+|++  ++++++.+.++. ++++.+.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~   31 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQA   31 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhc
Confidence            67889987  889999999999 7999998764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.27  E-value=0.073  Score=29.25  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=29.9

Q ss_pred             hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          24 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        24 l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ..+...+|.++|+|  ++.+++.+.++. ++++.+.++|+
T Consensus        94 ~~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~  130 (156)
T d2yzqa1          94 LQLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSI  130 (156)
T ss_dssp             ---CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             hcccCCEeehhccc--CceEECcccccH-HHHHHHHHcCe
Confidence            34678899999987  578899999999 79999998875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.21  Score=27.81  Aligned_cols=34  Identities=6%  Similarity=0.009  Sum_probs=28.8

Q ss_pred             cCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          27 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        27 ~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ....|+++|+|  .+++++.+.++. ++++.+.+.|.
T Consensus        98 ~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~  131 (169)
T d2j9la1          98 PTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGL  131 (169)
T ss_dssp             CCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTC
T ss_pred             cccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCc
Confidence            46779999997  478999999999 79998888765

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.29  E-value=0.047  Score=29.40  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             CCCCHHHHHHHHhhhcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          10 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        10 g~l~~~e~~ml~~~l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      |.++..  ++....-.-.+..+.++|+++.++++++.+.++. ++++.+.+++.
T Consensus        44 GivT~~--Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i   94 (120)
T d1jr1a4          44 GIISSR--DIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKK   94 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHH-HHHHHTCSCC-
T ss_pred             eeeeee--eeeehhccccCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCc
Confidence            556543  3332223334678999999999999999999998 78888877764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.04  E-value=0.31  Score=26.53  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=31.0

Q ss_pred             hcccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          24 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        24 l~~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      ....+..|+++|.+  ++++++.+.++. ++++.+.++++
T Consensus        64 ~~~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~  100 (142)
T d1pvma4          64 KKPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGL  100 (142)
T ss_dssp             CCGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             cccccccccccccc--ccccccchhhHH-HHHHHHHHcCC
Confidence            34667789999984  678999999999 79999988875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=84.59  E-value=0.14  Score=27.61  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=27.3

Q ss_pred             eeecceeeecccEEEEeCCCCCCHHHHHHHHhcCCC
Q psy4850          29 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSESK   64 (64)
Q Consensus        29 ~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~S   64 (64)
                      +.|.++|...  .++++.+.++. ++++.+.++|||
T Consensus         4 ~~v~~~m~~~--p~~v~~~~~v~-~a~~~m~~~~~~   36 (145)
T d1o50a3           4 KDVCKLISLK--PTVVEEDTPIE-EIVDRILEDPVT   36 (145)
T ss_dssp             HHHTTSSCCC--CEEECTTCBHH-HHHHHHHHSTTC
T ss_pred             eEhHHhCCCC--CEEECCcCcHH-HHHHHHHHcCCc
Confidence            4566778754  48999999999 799999999986

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=81.52  E-value=0.26  Score=26.67  Aligned_cols=35  Identities=23%  Similarity=0.124  Sum_probs=29.3

Q ss_pred             ccCeeecceeeecccEEEEeCCCCCCHHHHHHHHhcCC
Q psy4850          26 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSES   63 (64)
Q Consensus        26 ~~~~~v~dvM~Pr~~v~~l~~~~~~~~e~l~~i~~~g~   63 (64)
                      +.++.|+++|++  ++.+++.+.++. ++++.+.+++.
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~  106 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKI  106 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTC
T ss_pred             ccccchhHhhcc--ccccccccchHH-HHHHHHHHcCc
Confidence            556789999974  789999999999 79999988864