Psyllid ID: psy4854

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTPPKIRKVKKKGDEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL
cccccccccccccccccccccccHHHHHHHHHccccEEEEEEEEcccccccccEEEcccccEEEEEcccccccccccEEEEEEEcccccccccEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHcccEEEcccccccccccccccHHHHHHHHHccccccccccccEEEEEcccHHHHHHHcccccccccccccEEEcccccccccEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEcccHHHHHHHHccccccccccccccEEEEEEccEEEEEEccccccccccEEEEccccHHHHHHHHHcccccEEcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHccccccccccEEcEEEEEEccEEEEEEcccccccccEEEEEccccHHHHHHHHHcccccEEccccccccc
cccHHcHHHEEcHHHHHccccccHHHHHHHHHcccccEEEEEEccccccccccEEEcccccEEEEEEcccccccccccEEEEEEcHHHHccccEEEEEEEccEEEEEEEEccccccccccccHHHHccccccccccccccccEEEEEEcccccEEHcccHHHHHHHHHHHHHHHHHccccccHHcccccccccHHHccccHHHHHHHcccEEEEccccccccccccccHHHHHHHHHHHccccEEccccEEEEEcccHHHHHHHHcHHHHHHcccccEEEEEEEccccccEccEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHccHHHHHHHHHHccccHHHcccEEEEEEEEccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccEEcccccHcHHHHHccccccccHccHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccEEEEEEEccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHccccEEccccccccc
mdiysrllifpgkrrretggfpgasIIQSQIksgvsrkrtgftstgvpirpgyeifnandqrvgaitsgcpspslkkniamgyiepayskVGVELWVRVRdkrvdvkvtkmpfvksnyytppkirkvkkkgdepayskvGVELWVRVRdkrvdvkvtkmpflksnyhtppkYFLKFLSFFsgltfvfspgsspsaeqrtplydlhlshggkmvpfagfsmpvqyGAVSITashlhtrskvsvfDVSHMLQTVVTGKHREEWLESICVadvheldpgkgtlslftneqggiqddlIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLiavqgplsstilqrhtdldlsslyfmtsrpctiagipctltragytgedgveisvpgeQCTHIVEALLSdedvklaglgardslsgditlntpvphgslklsNDRFKSlgkdihlqflspeergliavqgplsstilqrhtdldlsslyfmtsrpctiagipctltragytgedgveisvpgeQCTHIVEALLSdedvklaglgardsl
mdiysrllifpgkrrretggfpgasiiqsqiksgvsrkrtgftstgvpirpgyEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRdkrvdvkvtkmpfvksnyytppkirkvkkkgdepayskvgvelwvrvrdkrvdvkvtkmpflksnyhtpPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVsnasrrkvdMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGArdslsgditlntpvphgslKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEallsdedvklaglgardsl
MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWvrvrdkrvdvkvTKMPFVKSNYYTPPKIRKVKKKGDEPAYSKVGVELWvrvrdkrvdvkvTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL
****SRLLIFP*****************************GFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTPPKIRKVK****EPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFS************LYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPV*********DRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVK**********
MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKS***********************************************************************************PLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL
MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTPPKIRKVKKKGDEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFS********QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL
*DIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTPPKIRKVKKKGDEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGAR***
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MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTPPKIRKVKKKGDEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
P48728403 Aminomethyltransferase, m yes N/A 0.409 0.563 0.542 3e-60
Q8CFA2403 Aminomethyltransferase, m yes N/A 0.486 0.669 0.473 3e-60
P28337392 Aminomethyltransferase, m yes N/A 0.425 0.602 0.510 1e-57
P25285397 Aminomethyltransferase, m yes N/A 0.409 0.571 0.533 7e-57
Q9TSZ7403 Aminomethyltransferase, m yes N/A 0.414 0.570 0.523 8e-57
P49364408 Aminomethyltransferase, m N/A N/A 0.427 0.580 0.483 2e-53
O49849407 Aminomethyltransferase, m N/A N/A 0.427 0.582 0.475 4e-53
P54260406 Aminomethyltransferase, m N/A N/A 0.427 0.583 0.479 5e-53
O23936407 Aminomethyltransferase, m N/A N/A 0.427 0.582 0.471 2e-52
O65396408 Aminomethyltransferase, m yes N/A 0.427 0.580 0.471 2e-52
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (595), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 162/238 (68%), Gaps = 11/238 (4%)

Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
           +RTPLYD HL+HGGKMV FAG+S+PVQY   S T SHLHTR   S+FDVSHMLQT + G 
Sbjct: 34  RRTPLYDFHLAHGGKMVAFAGWSLPVQYRD-SHTDSHLHTRQHCSLFDVSHMLQTKILGS 92

Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
            R + +ES+ V D+ EL P +GTLSLFTNE GGI DDLIVT T E  L++VSNA   + D
Sbjct: 93  DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 152

Query: 317 MDLMVAAQDRFKSL---GKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMT 373
           + LM   QD+ + L   G+D+ L+ L   +  L+A+QGP ++ +LQ     DL  L FMT
Sbjct: 153 LALM---QDKVRELQNQGRDVGLEVL---DNALLALQGPTAAQVLQAGVADDLRKLPFMT 206

Query: 374 SRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
           S    + G+  C +TR GYTGEDGVEISVP     H+  A+L + +VKLAGL ARDSL
Sbjct: 207 SAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSL 264
The glycine cleavage system catalyzes the degradation of glycine.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Back     alignment and function description
>sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2 Back     alignment and function description
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1 Back     alignment and function description
>sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1 Back     alignment and function description
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Back     alignment and function description
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Back     alignment and function description
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Back     alignment and function description
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Back     alignment and function description
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
328700383406 PREDICTED: aminomethyltransferase, mitoc 0.419 0.573 0.542 1e-65
357604471410 aminomethyltransferase [Danaus plexippus 0.464 0.629 0.505 3e-65
289739909420 mitochondrial aminomethyltransferase pre 0.464 0.614 0.488 1e-64
395516319411 PREDICTED: aminomethyltransferase, mitoc 0.428 0.579 0.551 2e-64
157125617412 aminomethyltransferase [Aedes aegypti] g 0.437 0.589 0.522 6e-64
270008909403 hypothetical protein TcasGA2_TC015522 [T 0.432 0.595 0.502 3e-63
118795262415 AGAP001124-PA [Anopheles gambiae str. PE 0.432 0.578 0.530 4e-63
189238264 1612 PREDICTED: similar to chloride channel p 0.432 0.148 0.502 8e-63
307189253453 Aminomethyltransferase, mitochondrial [C 0.430 0.527 0.529 9e-63
147906134404 aminomethyltransferase [Xenopus laevis] 0.425 0.584 0.556 2e-62
>gi|328700383|ref|XP_003241237.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 173/238 (72%), Gaps = 5/238 (2%)

Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
           ++T L++ H+ HGGKMVPFAG+ MPV+Y A SI +SHLHTR + S+FDVSHMLQT + GK
Sbjct: 27  RKTKLHEFHIRHGGKMVPFAGYMMPVKY-ADSIASSHLHTRRQCSLFDVSHMLQTKIHGK 85

Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQ-GGIQDDLIVTKTLEDSLFLVSNASRRKV 315
           HRE+++E ICV DV  L  GK  LSLF +++ GGI DDLI+TKT  D L++V+NA  ++ 
Sbjct: 86  HREQFMEQICVTDVQNLGTGKSALSLFIDDRTGGILDDLIITKTDGDFLYMVTNAGCKEQ 145

Query: 316 DMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTD--LDLSSLYFMT 373
           DM ++      FKS G D  L+FL ++E+ L+A+QGP S+ +LQ   D   DLS+LYFM 
Sbjct: 146 DMRMLTEQLSIFKSSGHDASLEFLDSDEQSLLALQGPRSAAVLQSFVDGSTDLSALYFMD 205

Query: 374 SRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
           S   T+ G+P C +TR GYTGEDG EISVP ++   I E+ ++ +DVKLAGLGARD+L
Sbjct: 206 STTATVCGVPDCRVTRCGYTGEDGFEISVPSDRVEAIAESFVAQDDVKLAGLGARDTL 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357604471|gb|EHJ64204.1| aminomethyltransferase [Danaus plexippus] Back     alignment and taxonomy information
>gi|289739909|gb|ADD18702.1| mitochondrial aminomethyltransferase precursor [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|395516319|ref|XP_003762338.1| PREDICTED: aminomethyltransferase, mitochondrial [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|157125617|ref|XP_001660716.1| aminomethyltransferase [Aedes aegypti] gi|108873536|gb|EAT37761.1| AAEL010276-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|270008909|gb|EFA05357.1| hypothetical protein TcasGA2_TC015522 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|118795262|ref|XP_322034.3| AGAP001124-PA [Anopheles gambiae str. PEST] gi|116116686|gb|EAA01036.3| AGAP001124-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|189238264|ref|XP_974499.2| PREDICTED: similar to chloride channel protein 2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307189253|gb|EFN73696.1| Aminomethyltransferase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|147906134|ref|NP_001090416.1| aminomethyltransferase [Xenopus laevis] gi|114108200|gb|AAI23374.1| MGC154901 protein [Xenopus laevis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
ZFIN|ZDB-GENE-041010-114409 amt "aminomethyltransferase" [ 0.414 0.562 0.565 9e-61
FB|FBgn0032287409 CG6415 [Drosophila melanogaste 0.432 0.586 0.524 9.3e-59
WB|WBGene00017765402 gcst-1 [Caenorhabditis elegans 0.434 0.599 0.514 1.1e-58
UNIPROTKB|I3LIR4403 AMT "Aminomethyltransferase" [ 0.409 0.563 0.542 8.4e-58
UNIPROTKB|P25285397 AMT "Aminomethyltransferase, m 0.407 0.569 0.535 2.2e-57
UNIPROTKB|P48728403 AMT "Aminomethyltransferase, m 0.409 0.563 0.542 2.8e-57
UNIPROTKB|H0Y695384 AMT "Aminomethyltransferase" [ 0.409 0.591 0.542 2.8e-57
MGI|MGI:3646700403 Amt "aminomethyltransferase" [ 0.486 0.669 0.473 3.6e-57
RGD|1359408403 Amt "aminomethyltransferase" [ 0.414 0.570 0.531 5.9e-57
UNIPROTKB|Q9TSZ7403 AMT "Aminomethyltransferase, m 0.414 0.570 0.523 2.5e-56
ZFIN|ZDB-GENE-041010-114 amt "aminomethyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 133/235 (56%), Positives = 162/235 (68%)

Query:   197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
             ++TPLYD H +HGGKMV FAG+SMPVQY    IT SH+HTR   S+FDVSHMLQT V GK
Sbjct:    41 RKTPLYDFHRAHGGKMVEFAGWSMPVQYKDSHIT-SHMHTRQHCSIFDVSHMLQTKVYGK 99

Query:   257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
              R +++ES+ V D+ EL   +GTLSLFTN +GGI DDLIVTKT +D L++VSNA     D
Sbjct:   100 DRVKFIESLIVGDIAELKDNQGTLSLFTNSKGGIMDDLIVTKTDQDYLYVVSNAGCADKD 159

Query:   317 MDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRP 376
                M A    FKS G D+ L+F+   E  LIA+QGP  + +LQ+    DL  L FMTS  
Sbjct:   160 SAHMQARLQEFKSAGHDVDLEFM---EESLIALQGPSMARVLQKGVGDDLKKLTFMTSVL 216

Query:   377 CTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
               + GI  C +TR GYTGEDGVEISVP +    + E LL+D +VKLAGLGARDSL
Sbjct:   217 TPVFGIQGCRVTRCGYTGEDGVEISVPSKDVVLLTEKLLADSEVKLAGLGARDSL 271
GO:0004047 "aminomethyltransferase activity" evidence=IEA
GO:0006546 "glycine catabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0008483 "transaminase activity" evidence=IEA
GO:0032259 "methylation" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
FB|FBgn0032287 CG6415 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00017765 gcst-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIR4 AMT "Aminomethyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P25285 AMT "Aminomethyltransferase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P48728 AMT "Aminomethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y695 AMT "Aminomethyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:3646700 Amt "aminomethyltransferase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359408 Amt "aminomethyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TSZ7 AMT "Aminomethyltransferase, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25285GCST_BOVIN2, ., 1, ., 2, ., 1, 00.53360.40900.5717yesN/A
Q9TSZ7GCST_CANFA2, ., 1, ., 2, ., 1, 00.52340.41440.5707yesN/A
P28337GCST_CHICK2, ., 1, ., 2, ., 1, 00.51030.42520.6020yesN/A
P48728GCST_HUMAN2, ., 1, ., 2, ., 1, 00.54200.40900.5632yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!
4th Layer2.1.2.10LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
PLN02319404 PLN02319, PLN02319, aminomethyltransferase 3e-84
PRK13579370 PRK13579, gcvT, glycine cleavage system aminomethy 3e-80
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 6e-73
COG0404379 COG0404, GcvT, Glycine cleavage system T protein ( 3e-69
TIGR00528362 TIGR00528, gcvT, glycine cleavage system T protein 3e-56
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 1e-52
PLN02319404 PLN02319, PLN02319, aminomethyltransferase 4e-39
PLN02319 404 PLN02319, PLN02319, aminomethyltransferase 2e-30
PRK13579370 PRK13579, gcvT, glycine cleavage system aminomethy 2e-28
PRK13579 370 PRK13579, gcvT, glycine cleavage system aminomethy 1e-27
pfam0866995 pfam08669, GCV_T_C, Glycine cleavage T-protein C-t 2e-27
COG0404379 COG0404, GcvT, Glycine cleavage system T protein ( 4e-24
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 4e-23
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 5e-23
PRK00389 359 PRK00389, gcvT, glycine cleavage system aminomethy 7e-22
TIGR00528362 TIGR00528, gcvT, glycine cleavage system T protein 1e-19
COG0404 379 COG0404, GcvT, Glycine cleavage system T protein ( 4e-19
TIGR01372985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 5e-17
TIGR00528 362 TIGR00528, gcvT, glycine cleavage system T protein 5e-14
TIGR01372 985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 3e-07
PRK12486368 PRK12486, dmdA, putative dimethyl sulfoniopropiona 3e-05
PRK12486368 PRK12486, dmdA, putative dimethyl sulfoniopropiona 2e-04
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information 
 Score =  267 bits (684), Expect = 3e-84
 Identities = 115/235 (48%), Positives = 150/235 (63%), Gaps = 5/235 (2%)

Query: 198 RTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKH 257
           +T LYD H+++GGKMVPFAG+SMP+QY   SI  S L+ R   S+FDVSHM    + GK 
Sbjct: 34  KTALYDFHVANGGKMVPFAGWSMPIQYKD-SIMDSTLNCRQNGSLFDVSHMCGLSLKGKD 92

Query: 258 REEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDM 317
              +LE++ VAD+  L  G GTLS+FTNE+GGI DD ++TK  +D ++LV NA  R  D+
Sbjct: 93  AIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDL 152

Query: 318 DLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPC 377
             +      FK+ G D+   +   +ER L+A+QGPL++ +LQ  T  DLS +YF   R  
Sbjct: 153 AHIEEHMKAFKAKGGDV--SWHVHDERSLLALQGPLAAPVLQHLTKEDLSKMYFGDFRIT 210

Query: 378 TIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDE--DVKLAGLGARDSL 430
            I G  C LTR GYTGEDG EISVP E    + +ALL      V+L GLGARDSL
Sbjct: 211 DINGADCFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKSEGKVRLTGLGARDSL 265

Length = 404
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
KOG2844|consensus856 100.0
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PLN02319404 aminomethyltransferase 100.0
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR01372985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
KOG2770|consensus401 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
PRK09559327 putative global regulator; Reviewed 100.0
KOG2770|consensus401 99.92
COG0354305 Predicted aminomethyltransferase related to GcvT [ 99.9
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 99.89
PLN02319404 aminomethyltransferase 99.88
PF0866995 GCV_T_C: Glycine cleavage T-protein C-terminal bar 99.88
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 99.88
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 99.83
KOG2844|consensus 856 99.79
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 99.78
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.78
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 99.73
TIGR01372985 soxA sarcosine oxidase, alpha subunit family, hete 99.71
KOG2929|consensus348 99.66
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 99.38
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 99.16
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 99.02
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 98.78
PRK09559327 putative global regulator; Reviewed 98.71
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 98.34
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 97.86
COG0354305 Predicted aminomethyltransferase related to GcvT [ 97.42
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 97.34
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 96.81
PF0866995 GCV_T_C: Glycine cleavage T-protein C-terminal bar 96.23
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.04
KOG2929|consensus348 94.52
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 92.69
COG0486 454 ThdF Predicted GTPase [General function prediction 89.58
>KOG2844|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.8e-80  Score=648.42  Aligned_cols=392  Identities=19%  Similarity=0.251  Sum_probs=364.9

Q ss_pred             hhHHHHHHHHcCCCCCcccccccCC-CCCCCCchhhhhhccccccc----cccCCCCCCCCCCCCCcChHHHHHCCCEEE
Q psy4854         139 VGVELWVRVRDKRVDVKVTKMPFLK-SNYHTPPKYFLKFLSFFSGL----TFVFSPGSSPSAEQRTPLYDLHLSHGGKMV  213 (555)
Q Consensus       139 ~g~~~a~~~~~g~~~~~~~~~d~~r-~~~~~~~~~~~~~~~e~~~~----~~p~~~~~~~r~~r~spl~~~~~~~gA~f~  213 (555)
                      .|++||+||++|+|+.||+.+|++| +++|+|+.|+++|++|+|+.    .||++|+.+||++|+||||+++.++||+|+
T Consensus       390 ~Gk~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sply~~L~~aGav~~  469 (856)
T KOG2844|consen  390 CGKYLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSPLYDRLESAGAVFG  469 (856)
T ss_pred             hhHHHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCccHHHHHhcccchh
Confidence            6799999999999999999999999 99999999999999998555    499999999999999999999999999999


Q ss_pred             eeCCcccccccCC----------------------CChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCC
Q psy4854         214 PFAGFSMPVQYGA----------------------VSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVH  271 (555)
Q Consensus       214 ~~~g~e~p~~f~~----------------------~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~  271 (555)
                      +.+|||||.||.+                      +.+..||+|||+.|+++|||+|+|+.|+|+||.++||+||++||+
T Consensus       470 e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSanv~  549 (856)
T KOG2844|consen  470 EKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSANVD  549 (856)
T ss_pred             hhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhcCCC
Confidence            9999999999964                      469999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcC
Q psy4854         272 ELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQG  351 (555)
Q Consensus       272 ~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~G  351 (555)
                      . ++|+++||+|||++|++++||+|.|+++++|+|++++.++.+++.||+++++.   .+++|.+.|+| ++++.|+|+|
T Consensus       550 ~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~---~~~~v~l~DvT-~~~~~l~i~G  624 (856)
T KOG2844|consen  550 V-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPK---GGSNVELKDVT-DELGALSIIG  624 (856)
T ss_pred             C-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhc---cCCceeeeech-hhhceeeecC
Confidence            6 99999999999999999999999999999999999999999999999999975   37899999999 6789999999


Q ss_pred             CCHHHHHhhccccCCCC--CcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---eeecCchh
Q psy4854         352 PLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---VKLAGLGA  426 (555)
Q Consensus       352 P~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a  426 (555)
                      |.|+.+|++|++.|+++  ||++++++..++++.++++|++|+||+|||||+|.+++.+||++||+||+   +.++|++|
T Consensus       625 P~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya  704 (856)
T KOG2844|consen  625 PQSRKVLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYA  704 (856)
T ss_pred             chHHHHHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHH
Confidence            99999999999999985  99999999999999999999999999999999999999999999999998   99999999


Q ss_pred             hHhhh---------ccCCCC-CCcccccccccccccc--cCCceeEEecc-C---CcEEEEEEeec-C-cc--ceEeecc
Q psy4854         427 RDSLS---------GDITLN-TPVPHGSLKLSNDRFK--SLGKDIHLQFL-S---PEERGLIAVQG-P-LS--STILQRH  486 (555)
Q Consensus       427 ~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~--~iG~eal~~~~-~---~~lv~l~~~~g-p-~a--~~v~~~~  486 (555)
                      +++||         +||+++ ||+|||+.|.|+|+|+  |||++|+.+|+ +   ||+|.|++++. | ++  ++|++++
T Consensus       705 ~~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p~dFiGk~ALeqqra~GlkkrlV~l~l~d~d~~~~G~E~I~rnG  784 (856)
T KOG2844|consen  705 LRALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKPADFIGKQALEQQKAEGLKKRLVCLTLDDHDPDPWGGEPIYRNG  784 (856)
T ss_pred             HHHHHHHHHHHhhccccCCCCChhhccceeEEecCCCccchhHHHHHHHHHhhhhheEEEEEecCCCCCccCCcceeeCC
Confidence            99999         999999 9999999999999986  59999999887 3   99999999655 5 34  9999988


Q ss_pred             ccc-ceee--EEEEeeeeecccCee---EEEEeccccCCceEEEEeCCcchHHHH
Q psy4854         487 TDL-DLSS--LYFMTSRPCTIAGIP---CTLTRAGYTGEDGVEISVPGEQCTHIV  535 (555)
Q Consensus       487 ~~~-~~t~--~~~~~~~~~~~~~i~---~~~~r~~y~ge~g~EI~i~~~~~~~v~  535 (555)
                      ..+ .+++  .+|+..+++|+|+|+   -..+..+|++...|||++.+.++++..
T Consensus       785 ~~VG~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg~yEvdi~Gkry~a~~  839 (856)
T KOG2844|consen  785 QVVGNTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSGEYEVDIAGKRYPAKA  839 (856)
T ss_pred             EEEeeeeeccceeeecceEEEEEecccccCccCHHHhcCCcEEEEecccccceeE
Confidence            765 3444  578888999999987   456788999999999999999888643

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2770|consensus Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>KOG2770|consensus Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>KOG2844|consensus Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2929|consensus Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>KOG2929|consensus Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1wsr_A375 Crystal Structure Of Human T-Protein Of Glycine Cle 2e-61
1wsr_A 375 Crystal Structure Of Human T-Protein Of Glycine Cle 6e-19
1woo_A364 Crystal Structure Of T-Protein Of The Glycine Cleav 8e-33
1woo_A 364 Crystal Structure Of T-Protein Of The Glycine Cleav 6e-09
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 2e-30
1yx2_A 365 Crystal Structure Of The Probable Aminomethyltransf 4e-09
3gir_A393 Crystal Structure Of Glycine Cleavage System Aminom 4e-30
3gir_A 393 Crystal Structure Of Glycine Cleavage System Aminom 5e-08
1v5v_A401 Crystal Structure Of A Component Of Glycine Cleavag 2e-26
1v5v_A 401 Crystal Structure Of A Component Of Glycine Cleavag 1e-08
3a8i_A364 Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len 6e-24
3a8k_A364 Crystal Structure Of Etd97n-Ehred Complex Length = 2e-23
1vlo_A381 Crystal Structure Of Aminomethyltransferase (T Prot 5e-21
1pj5_A830 Crystal Structure Of Dimethylglycine Oxidase Of Art 6e-10
3gsi_A827 Crystal Structure Of D552a Dimethylglycine Oxidase 5e-09
2gag_A965 Heteroteterameric Sarcosine: Structure Of A Diflavi 7e-07
1vrq_A964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 3e-06
3tfh_A369 Dmsp-Dependent Demethylase From P. Ubique - Apo Len 4e-06
2gah_A965 Heterotetrameric Sarcosine: Structure Of A Diflavin 1e-05
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 162/238 (68%), Gaps = 11/238 (4%)
Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
           +RTPLYD HL+HGGKMV FAG+S+PVQY   S T SHLHTR   S+FDVSHMLQT + G 
Sbjct: 6   RRTPLYDFHLAHGGKMVAFAGWSLPVQYRD-SHTDSHLHTRQHCSLFDVSHMLQTKILGS 64
Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
            R + +ES+ V D+ EL P +GTLSLFTNE GGI DDLIVT T E  L++VSNA   + D
Sbjct: 65  DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 124
Query: 317 MDLMVAAQDRFKSL---GKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMT 373
           + LM   QD+ + L   G+D+ L+ L   +  L+A+QGP ++ +LQ     DL  L FMT
Sbjct: 125 LALM---QDKVRELQNQGRDVGLEVL---DNALLALQGPTAAQVLQAGVADDLRKLPFMT 178
Query: 374 SRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
           S    + G+  C +TR GYTGEDGVEISVP     H+  A+L + +VKLAGL ARDSL
Sbjct: 179 SAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSL 236
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393 Back     alignment and structure
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 364 Back     alignment and structure
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex Length = 364 Back     alignment and structure
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein; Tetrahydrofolate-Dependent) Of Glycine Cleavage System (Np417381) From Escherichia Coli K12 At 1.70 A Resolution Length = 381 Back     alignment and structure
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo Length = 369 Back     alignment and structure
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 1e-113
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 1e-50
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 4e-37
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 1e-105
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 4e-47
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 4e-32
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 2e-91
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 1e-34
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 3e-27
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 1e-89
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 8e-32
1yx2_A 365 Aminomethyltransferase; glycine cleavage system T 5e-28
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 3e-89
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 1e-28
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 9e-26
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 6e-84
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 4e-27
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 1e-24
3ttg_A355 Putative aminomethyltransferase; structural genomi 6e-81
3ttg_A355 Putative aminomethyltransferase; structural genomi 2e-27
3ttg_A 355 Putative aminomethyltransferase; structural genomi 4e-24
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 4e-54
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 2e-26
3tfi_A 369 GCVT-like aminomethyltransferase protein; demethyl 2e-13
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 2e-37
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 4e-16
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 2e-10
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 3e-19
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 1e-08
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 4e-06
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
 Score =  341 bits (877), Expect = e-113
 Identities = 126/240 (52%), Positives = 160/240 (66%), Gaps = 5/240 (2%)

Query: 192 SPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQT 251
           +    +RTPLYD HL+HGGKMV FAG+S+PVQY   S T SHLHTR   S+FDVSHMLQT
Sbjct: 1   AQEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRD-SHTDSHLHTRQHCSLFDVSHMLQT 59

Query: 252 VVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNAS 311
            + G  R + +ES+ V D+ EL P +GTLSLFTNE GGI DDLIVT T E  L++VSNA 
Sbjct: 60  KILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAG 119

Query: 312 RRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYF 371
             + D+ LM       ++ G+D+ L+ L   +  L+A+QGP ++ +LQ     DL  L F
Sbjct: 120 CWEKDLALMQDKVRELQNQGRDVGLEVL---DNALLALQGPTAAQVLQAGVADDLRKLPF 176

Query: 372 MTSRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
           MTS    + G+  C +TR GYTGEDGVEISVP     H+  A+L + +VKLAGL ARDSL
Sbjct: 177 MTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSL 236
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 100.0
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.95
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.95
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 99.92
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 99.89
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 99.87
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 99.85
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 99.82
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 99.82
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 99.8
3ttg_A355 Putative aminomethyltransferase; structural genomi 99.8
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 99.78
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 99.68
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 99.64
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.41
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.3
2bry_A497 NEDD9 interacting protein with calponin homology a 96.48
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 82.23
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-62  Score=566.14  Aligned_cols=387  Identities=21%  Similarity=0.295  Sum_probs=334.9

Q ss_pred             hhHHHHHHHHcCCCCCcccccccCC-CCCCCCchhhhhhcccc----ccccccCCCCCCCCCCCCCcChHHHHHCCCEEE
Q psy4854         139 VGVELWVRVRDKRVDVKVTKMPFLK-SNYHTPPKYFLKFLSFF----SGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMV  213 (555)
Q Consensus       139 ~g~~~a~~~~~g~~~~~~~~~d~~r-~~~~~~~~~~~~~~~e~----~~~~~p~~~~~~~r~~r~spl~~~~~~~gA~f~  213 (555)
                      .|+.||+||.++.|+.|+..++++| ...+.+++|+++++.|+    |.++||++|+.++|++|+||||++|.++||+|.
T Consensus       368 ~g~~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tpl~~~~~~~ga~~~  447 (830)
T 1pj5_A          368 VAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSPFHARHKELGAFFL  447 (830)
T ss_dssp             HHHHHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCTTHHHHHHTTEEEE
T ss_pred             HHHHHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCcCHHHHHHcCCEEE
Confidence            4699999999999999999999999 77788899999999875    777899999999999999999999999999999


Q ss_pred             eeCCcccccccCCC--------------------------ChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccc
Q psy4854         214 PFAGFSMPVQYGAV--------------------------SITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICV  267 (555)
Q Consensus       214 ~~~g~e~p~~f~~~--------------------------~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t  267 (555)
                      +++||+||.||+.+                          .+.+||+|+|++|+|||+|||++|.|+|+||.+|||+++|
T Consensus       448 ~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~~~t  527 (830)
T 1pj5_A          448 EAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTT  527 (830)
T ss_dssp             EETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBS
T ss_pred             EECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHHhcc
Confidence            99999999999731                          0679999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhc--cCCCC-EEEEEccCCCe
Q psy4854         268 ADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFK--SLGKD-IHLQFLSAEER  344 (555)
Q Consensus       268 ~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~-V~i~dvs~~~~  344 (555)
                      ||| .+++|+++||+|||++|+|++|++|+|+++++|+|   +++.+.+++||++++..+.  ..+.+ |+|+|+| +++
T Consensus       528 ~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s-~~~  602 (830)
T 1pj5_A          528 ADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTT-GGT  602 (830)
T ss_dssp             SCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECG-GGE
T ss_pred             ccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEcc-CCE
Confidence            999 78999999999999999999999999999988888   3456679999999986320  01126 9999998 568


Q ss_pred             EEEEEcCCCHHHHHhhccccCCCC--CcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---e
Q psy4854         345 GLIAVQGPLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---V  419 (555)
Q Consensus       345 ~~i~v~GP~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~  419 (555)
                      +.|.|+||+|+++|++++..|++.  ++++++....+++.+++++|++|+||+||||++|.+++.++|++|+++|+   +
T Consensus       603 ~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~ag~~~~~  682 (830)
T 1pj5_A          603 CCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPFGV  682 (830)
T ss_dssp             EEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHHHGGGTC
T ss_pred             EEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhhhhhcCC
Confidence            999999999999999998877754  99999999999999999999999999999999999999999999998763   8


Q ss_pred             eecCchhhHhhh---------ccCCCC-CCccccccccccccccc-CCceeEEecc-C---CcEEEEEEeec-C-c-c-c
Q psy4854         420 KLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFKS-LGKDIHLQFL-S---PEERGLIAVQG-P-L-S-S  480 (555)
Q Consensus       420 ~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~-iG~eal~~~~-~---~~lv~l~~~~g-p-~-a-~  480 (555)
                      .++|+.|+++||         +|++++ +|+|+||+|+|+|+|+| +|||++++++ .   |++++|.+..+ + + . .
T Consensus       683 ~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~kg~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~~~~g~  762 (830)
T 1pj5_A          683 IAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKE  762 (830)
T ss_dssp             EEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCC
T ss_pred             EEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCCCCCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCC
Confidence            999999999999         899999 99999999999999988 9999999887 2   78999998431 2 2 2 6


Q ss_pred             eEeeccccc-ceeeEEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHH
Q psy4854         481 TILQRHTDL-DLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTH  533 (555)
Q Consensus       481 ~v~~~~~~~-~~t~~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~  533 (555)
                      +|+.++..+ .+|+..|   ++.....|.+++++.++..+..++|.+.++..++
T Consensus       763 ~v~~~g~~vG~vts~~~---sp~~~~~iala~v~~~~~~g~~~~v~~~~~~~~a  813 (830)
T 1pj5_A          763 PVFYKEQAVGYVTSAAY---GYTVAKPIAYSYLPGTVSVGDSVDIEYFGRRITA  813 (830)
T ss_dssp             EEEETTEEEEECCSEEE---ETTTTEEEEEEEEETTCCTTCEEEEEETTEEEEE
T ss_pred             EEeeCCeEEEEEeccee---ccccCceEEEEEechhhcCCCEEEEEECCEEEEE
Confidence            777644321 3444333   4444446888899988865556888888875544
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 8e-41
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 1e-06
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 3e-39
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 4e-06
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 2e-34
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 8e-13
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 3e-32
d1v5va189 b.44.2.1 (A:313-401) Glycine cleavage system T pro 2e-23
d1wosa183 b.44.2.1 (A:279-361) Glycine cleavage system T pro 2e-20
d1vloa190 b.44.2.1 (A:278-367) Glycine cleavage system T pro 7e-19
d1pj5a188 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, 6e-17
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 8e-10
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  147 bits (372), Expect = 8e-41
 Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 19/251 (7%)

Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
           +R  ++D H  H  K+  FAG+ MP+ Y   SI   HL  R+ V +FDVSHM + V  GK
Sbjct: 4   KRVHIFDWHKEHARKIEEFAGWEMPIWYS--SIKEEHLAVRNAVGIFDVSHMGEIVFRGK 61

Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
              ++L+ +   D+ +     GT +L  NE+G I+D+ +V     +   ++ ++   +  
Sbjct: 62  DALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKL 121

Query: 317 MDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRP 376
                  +   +   K      L   +  + AVQGP +  + +    +D++ +++  +R 
Sbjct: 122 YAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARW 181

Query: 377 CTIAGIPCTLTRAGYTGEDGVEISVPG--------------EQCTHIVEALLS---DEDV 419
             + GI   L+R+GYTGE+G E+ +                E+  H+ E +L       +
Sbjct: 182 VELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILEEGKKYGI 241

Query: 420 KLAGLGARDSL 430
           K  GLGARD+L
Sbjct: 242 KPCGLGARDTL 252
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 89 Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 83 Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Length = 88 Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcu 99.88
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotog 99.85
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Ar 99.82
d1vloa190 Glycine cleavage system T protein, GcvT {Escherich 99.81
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 99.73
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 99.72
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 99.72
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 99.57
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 98.12
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Ar 96.49
d1vloa190 Glycine cleavage system T protein, GcvT {Escherich 92.63
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcu 90.41
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 88.92
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotog 88.62
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 84.99
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=5.2e-59  Score=475.68  Aligned_cols=269  Identities=23%  Similarity=0.328  Sum_probs=250.2

Q ss_pred             CCCCCCcChHHHHHCCCEEEeeCCcccccccCCC--------------------------ChHHHHHHHhcCcEEEecCC
Q psy4854         194 SAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAV--------------------------SITASHLHTRSKVSVFDVSH  247 (555)
Q Consensus       194 r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~--------------------------~~~~E~~a~r~~v~l~DlS~  247 (555)
                      ||+|+||||++|+++||+|++++|||||.||.++                          .+.+||+|||++|+|||+||
T Consensus         1 R~lr~spl~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vglfD~S~   80 (315)
T d1pj5a4           1 RNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTP   80 (315)
T ss_dssp             CCSBCCTTHHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTT
T ss_pred             CCCccCccHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcceecccc
Confidence            8999999999999999999999999999999631                          27999999999999999999


Q ss_pred             ceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhh
Q psy4854         248 MLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRF  327 (555)
Q Consensus       248 ~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~  327 (555)
                      |++|+|+|+||.+|||+++|||++. ++|+++||+|||++|+|++|++|+|+++|+|+|+++++....+..|+.++....
T Consensus        81 ~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~~~~~~~  159 (315)
T d1pj5a4          81 LKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQS  159 (315)
T ss_dssp             SCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhhhhhhhc
Confidence            9999999999999999999999985 889999999999999999999999999999999999888888888888776544


Q ss_pred             ccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCC--CCcccceEeeeecCccEEEEecCccCCCeEEEEecCCc
Q psy4854         328 KSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLS--SLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQ  405 (555)
Q Consensus       328 ~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~--~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~  405 (555)
                      .....+|++.|+| ++++.|.||||+|+++|++++..+++  .+|+++++...+++.+++++|++|+||+||||++|.++
T Consensus       160 ~~~~~~v~i~d~t-~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~~~~~~  238 (315)
T d1pj5a4         160 GSATDWVQVRDTT-GGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADN  238 (315)
T ss_dssp             SCTTCCCEEEECG-GGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHH
T ss_pred             ccccccceeEecC-cceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEEEEEEecCccCCCeEEecccHHH
Confidence            3345779999999 57899999999999999999987765  58999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC---eeecCchhhHhhh---------ccCCCC-CCccccccccccccccc-CCceeEEecc
Q psy4854         406 CTHIVEALLSDED---VKLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFKS-LGKDIHLQFL  464 (555)
Q Consensus       406 a~~l~~~L~~ag~---~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~-iG~eal~~~~  464 (555)
                      +.++|+.|+++|+   ++|+|+.|+++||         +|++++ +|+|+||+|+|+++|+| +||||+.+++
T Consensus       239 a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~K~~FiGkeAl~~~~  311 (315)
T d1pj5a4         239 GQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRT  311 (315)
T ss_dssp             HHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCC
T ss_pred             HHHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCCCCCccCHHHHHHHH
Confidence            9999999999886   8999999999999         899999 99999999999999997 9999987665
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure