Psyllid ID: psy4880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MREDRSFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHYCASRE
Secondary Structure (PSIPRED)
cccccEEEEEHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEEccccccccccccHHHHHHHHccccccEEEEEccccccEEcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEcccHcccccccEEEEEEHHcccccEEEEEEcccccccccccccHHHccccccccccEEEEEccccccEEEccccHHHHHHHcccc
Coil and Loop (DISEMBL)
MREDRSFLICLWTALVggaygefrgdpnyhtetpsppffmtmagpthvlvhvnpdihknhadkivdyfdkpnltdftafcrcwrsrdfpycngfhhdynkllgdnvgpilirrsklkpftlatprpraLEHYCASRE
Flexible Loop (DISEMBL)
MREDRSFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSklkpftlatprpralehycasre
Low Complexity Region (SEG)
MREDRSFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHYCASRE
Disordered region (IsUnstruct)
******FLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLAT**************
Disordered Region (DISOPRED)
****RSF*ICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAG*****VHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI**************PRALEHYC****
Disordered Region (DISEMBL)
MREDRSFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHYCASRE
Disordered Region (DISPRO)
*****SFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHYCAS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREDRSFLICLWTALVGGAYGEFRGDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHYCASRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
B3M1H7	134	CDGSH iron-sulfur domain-	N/A	N/A	0.416	0.425	0.473	1e-13
B4K5X8	131	CDGSH iron-sulfur domain-	N/A	N/A	0.445	0.465	0.5	1e-13
B4JYJ2	132	CDGSH iron-sulfur domain-	N/A	N/A	0.423	0.439	0.448	3e-13
B4MBU8	133	CDGSH iron-sulfur domain-	N/A	N/A	0.408	0.421	0.5	6e-13
B4QZI8	133	CDGSH iron-sulfur domain-	N/A	N/A	0.437	0.451	0.475	2e-12
B4HZ81	133	CDGSH iron-sulfur domain-	N/A	N/A	0.437	0.451	0.475	2e-12
B4NFN4	134	CDGSH iron-sulfur domain-	N/A	N/A	0.430	0.440	0.406	2e-12
Q9VAM6	133	CDGSH iron-sulfur domain-	yes	N/A	0.437	0.451	0.475	3e-12
B4PQ50	133	CDGSH iron-sulfur domain-	N/A	N/A	0.416	0.428	0.482	4e-12
B3P5J1	133	CDGSH iron-sulfur domain-	N/A	N/A	0.416	0.428	0.482	4e-12

>sp|B3M1H7|CISD2_DROAN CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila ananassae GN=GF16608 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query: 58  KNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRS 114
           + H  K+VD  D  ++ D  AFCRCW+S+++PYC+G H ++NKL GDNVGP+++++ 
Sbjct: 78  RKHEPKVVDTIDVEDIADKAAFCRCWKSKNWPYCDGSHGEHNKLTGDNVGPVVVKKQ 134

Drosophila ananassae (taxid: 7217)

>sp|B4K5X8|CISD2_DROMO CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila mojavensis GN=GI10402 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 53  NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
           N +I K H  K+VD  D  N+ D  AFCRCW+++++PYC+G H ++NK  GDNVGP++I+
Sbjct: 71  NDNIRK-HEAKVVDMIDIENIADKAAFCRCWKTKNWPYCDGSHGEHNKNTGDNVGPVVIK 129

Query: 113 RS 114
           R+
Sbjct: 130 RN 131

Drosophila mojavensis (taxid: 7230)

>sp|B4JYJ2|CISD2_DROGR CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila grimshawi GN=GH14305 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 43/58 (74%)

Query: 58  KNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115
           + H  K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NKL GDNVGP+++ + K
Sbjct: 75  RKHEAKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKLTGDNVGPVVVSKKK 132

Drosophila grimshawi (taxid: 7222)

>sp|B4MBU8|CISD2_DROVI CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila virilis GN=GJ14516 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 58  KNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR 113
           + H  K+VD  D  N+ D  AFCRCW+++++PYC+G H  +NK  GDNVGPI+I++
Sbjct: 77  RKHEAKVVDMIDIENIADKAAFCRCWKTKNWPYCDGSHAAHNKDTGDNVGPIVIKK 132

Drosophila virilis (taxid: 7244)

>sp|B4QZI8|CISD2_DROSI CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila simulans GN=GD17906 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 53  NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
           N  I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I+
Sbjct: 74  NNQIRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132

Query: 113 R 113
           +
Sbjct: 133 K 133

Drosophila simulans (taxid: 7240)

>sp|B4HZ81|CISD2_DROSE CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila sechellia GN=GM12252 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 53  NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
           N  I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I+
Sbjct: 74  NNQIRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132

Query: 113 R 113
           +
Sbjct: 133 K 133

Drosophila sechellia (taxid: 7238)

>sp|B4NFN4|CISD2_DROWI CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila willistoni GN=GK22673 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 44/59 (74%)

Query: 55  DIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR 113
           ++ + H  K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGP+++++
Sbjct: 76  NLIRKHEAKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPVVVKK 134

Drosophila willistoni (taxid: 7260)

>sp|Q9VAM6|CISD2_DROME CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG1458 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 53  NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
           N  I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I+
Sbjct: 74  NNHIRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132

Query: 113 R 113
           +
Sbjct: 133 K 133

Drosophila melanogaster (taxid: 7227)

>sp|B4PQ50|CISD2_DROYA CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila yakuba GN=GE10465 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 56  IHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR 113
           I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I++
Sbjct: 77  IRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIKK 133

Drosophila yakuba (taxid: 7245)

>sp|B3P5J1|CISD2_DROER CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila erecta GN=GG12028 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 56  IHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR 113
           I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I++
Sbjct: 77  IRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIKK 133

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
168063771	112	predicted protein [Physcomitrella patens	0.489	0.598	0.492	1e-12
194744449	134	GF16608 [Drosophila ananassae] gi|290463	0.416	0.425	0.473	9e-12
195112386	131	GI10402 [Drosophila mojavensis] gi|29046	0.445	0.465	0.5	9e-12
52345526	103	CDGSH iron sulfur domain 1 [Xenopus (Sil	0.459	0.611	0.484	1e-11
221102302	103	PREDICTED: CDGSH iron-sulfur domain-cont	0.518	0.689	0.458	1e-11
224134565	168	predicted protein [Populus trichocarpa]	0.459	0.375	0.492	1e-11
340726148	132	PREDICTED: CDGSH iron-sulfur domain-cont	0.459	0.477	0.5	2e-11
168055836	86	predicted protein [Physcomitrella patens	0.445	0.709	0.507	2e-11
195061915	132	GH14305 [Drosophila grimshawi] gi|290463	0.423	0.439	0.448	2e-11
350405222	132	PREDICTED: CDGSH iron-sulfur domain-cont	0.459	0.477	0.5	4e-11

>gi|168063771|ref|XP_001783842.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664620|gb|EDQ51332.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 46  THVLVHVNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGD 104
           T    H+NP I K+ +DK+VD      L+   TA+CRCWRS  FP CNG H  +NK  GD
Sbjct: 45  TASAAHINPSIRKD-SDKVVDTVQANELSKPLTAYCRCWRSETFPLCNGAHVKHNKETGD 103

Query: 105 NVGPILIRR 113
           NVGP+L+++
Sbjct: 104 NVGPLLLKK 112

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194744449|ref|XP_001954707.1| GF16608 [Drosophila ananassae] gi|290463167|sp|B3M1H7.1|CISD2_DROAN RecName: Full=CDGSH iron-sulfur domain-containing protein 2 homolog gi|190627744|gb|EDV43268.1| GF16608 [Drosophila ananassae]

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query: 58  KNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRS 114
           + H  K+VD  D  ++ D  AFCRCW+S+++PYC+G H ++NKL GDNVGP+++++ 
Sbjct: 78  RKHEPKVVDTIDVEDIADKAAFCRCWKSKNWPYCDGSHGEHNKLTGDNVGPVVVKKQ 134

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112386|ref|XP_002000754.1| GI10402 [Drosophila mojavensis] gi|290463170|sp|B4K5X8.1|CISD2_DROMO RecName: Full=CDGSH iron-sulfur domain-containing protein 2 homolog gi|193917348|gb|EDW16215.1| GI10402 [Drosophila mojavensis]

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 53  NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
           N +I K H  K+VD  D  N+ D  AFCRCW+++++PYC+G H ++NK  GDNVGP++I+
Sbjct: 71  NDNIRK-HEAKVVDMIDIENIADKAAFCRCWKTKNWPYCDGSHGEHNKNTGDNVGPVVIK 129

Query: 113 RS 114
           R+
Sbjct: 130 RN 131

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|52345526|ref|NP_001004811.1| CDGSH iron sulfur domain 1 [Xenopus (Silurana) tropicalis] gi|49250505|gb|AAH74579.1| MGC69453 protein [Xenopus (Silurana) tropicalis]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           VNPD+ K++  K+V  FD  +L D   +CRCWRS+ FPYC+G H  +N+  GDNVGP++I
Sbjct: 40  VNPDLQKDNP-KVVHAFDMEDLGDKAVYCRCWRSKKFPYCDGAHTKHNEETGDNVGPLII 98

Query: 112 RRSK 115
           ++ +
Sbjct: 99  KKKE 102

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221102302|ref|XP_002154650.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 1-like [Hydra magnipapillata]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 42  MAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKL 101
           + G T     +N  I K+ A K+V  +D  ++ + TAFCRCW+S  FPYC+G H+ +NKL
Sbjct: 32  LQGKTQPKDVINDSIEKDKA-KVVHSYDIEDINESTAFCRCWKSSKFPYCDGTHNAHNKL 90

Query: 102 LGDNVGPILIRR 113
            GDNVGP+L+ +
Sbjct: 91  SGDNVGPVLLNK 102

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|224134565|ref|XP_002321854.1| predicted protein [Populus trichocarpa] gi|222868850|gb|EEF05981.1| predicted protein [Populus trichocarpa]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 52  VNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +NP+I KN  +K+VD      L+   TA+CRCWRS  FP C+G H  +NK  GDNVGP+L
Sbjct: 104 INPEIRKNE-EKVVDSVVVAELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLL 162

Query: 111 IRRSK 115
           +++ K
Sbjct: 163 LKKQK 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|340726148|ref|XP_003401424.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 2 homolog [Bombus terrestris]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           VNP+I K+  +K+VD  D  ++T+  AFCRCWRS+++PYC+G H  +N+   DNVGP++I
Sbjct: 69  VNPNIKKD-VNKVVDTVDIEDITEKAAFCRCWRSKNWPYCDGTHGSHNQETNDNVGPLVI 127

Query: 112 RRSK 115
            R+K
Sbjct: 128 TRNK 131

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168055836|ref|XP_001779929.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668643|gb|EDQ55246.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 52  VNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +NP I K+ +DK+VD      L+   TA+CRCWRS  FP CNG H  +NK  GDNVGP+L
Sbjct: 25  INPSIRKD-SDKVVDTVQADELSKPLTAYCRCWRSETFPLCNGAHVKHNKETGDNVGPLL 83

Query: 111 IRR 113
           +++
Sbjct: 84  LKK 86

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195061915|ref|XP_001996096.1| GH14305 [Drosophila grimshawi] gi|290463169|sp|B4JYJ2.1|CISD2_DROGR RecName: Full=CDGSH iron-sulfur domain-containing protein 2 homolog gi|193891888|gb|EDV90754.1| GH14305 [Drosophila grimshawi]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 43/58 (74%)

Query: 58  KNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115
           + H  K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NKL GDNVGP+++ + K
Sbjct: 75  RKHEAKVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKLTGDNVGPVVVSKKK 132

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405222|ref|XP_003487364.1| PREDICTED: CDGSH iron-sulfur domain-containing protein 2 homolog [Bombus impatiens]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           VNP+I K+  +K+VD  D  ++T+  AFCRCWRS+++PYC+G H  +N+   DNVGP++I
Sbjct: 69  VNPNIKKD-VNKVVDTVDIEDITEKAAFCRCWRSKNWPYCDGAHGRHNQETNDNVGPLVI 127

Query: 112 RRSK 115
            R+K
Sbjct: 128 TRNK 131

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0062442	133	CG1458 [Drosophila melanogaste	0.437	0.451	0.475	2.1e-13
ZFIN|ZDB-GENE-040426-1162	107	cisd1 "CDGSH iron sulfur domai	0.459	0.588	0.468	3.4e-13
UNIPROTKB|Q3ZBU2	106	CISD1 "CDGSH iron-sulfur domai	0.445	0.575	0.483	4.4e-13
UNIPROTKB|F1PNJ5	103	CISD1 "Uncharacterized protein	0.459	0.611	0.468	7.1e-13
UNIPROTKB|Q29BX8	132	GA13095 "CDGSH iron-sulfur dom	0.437	0.454	0.442	9.1e-13
TAIR|locus:2165336	108	NEET "NEET group protein" [Ara	0.445	0.564	0.492	9.1e-13
UNIPROTKB|Q9NZ45	108	CISD1 "CDGSH iron-sulfur domai	0.459	0.583	0.453	1.5e-12
MGI|MGI:1261855	108	Cisd1 "CDGSH iron sulfur domai	0.459	0.583	0.453	1.5e-12
RGD|1309529	108	Cisd1 "CDGSH iron sulfur domai	0.459	0.583	0.453	1.5e-12
UNIPROTKB|F1NG44	106	CISD1 "Uncharacterized protein	0.459	0.594	0.468	2.4e-12

FB|FBgn0062442 CG1458 [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query:    53 NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
             N  I KN   K+VD  D  ++ +  AFCRCW+++++PYC+G H ++NK  GDNVGPI+I+
Sbjct:    74 NNHIRKNEP-KVVDMIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132

Query:   113 R 113
             +
Sbjct:   133 K 133

GO:0008150 "biological_process" evidence=ND

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

ZFIN|ZDB-GENE-040426-1162 cisd1 "CDGSH iron sulfur domain 1" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VN D+ K++  K+V  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct:    44 VNLDLQKDNP-KVVHAFDIEDLGDKAVYCRCWRSKKFPFCDGAHAKHNQETGDNVGPLII 102

Query:   112 RRSK 115
             +R +
Sbjct:   103 KRKE 106

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZBU2 CISD1 "CDGSH iron-sulfur domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VNP I K++  K+V  FD  +L D   +CRCWRS+ FP C+G H  +N+  GDNVGP++I
Sbjct:    43 VNPHIQKDNP-KVVHAFDMEDLGDKAVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLII 101

Query:   112 RR 113
             ++
Sbjct:   102 KK 103

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0043457 "regulation of cellular respiration" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PNJ5 CISD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VN  I K++  KIV  +D  +L D T +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct:    40 VNLHIQKDNP-KIVHAYDMEDLGDKTVYCRCWRSKKFPFCDGSHTKHNEETGDNVGPLII 98

Query:   112 RRSK 115
             ++ +
Sbjct:    99 KKKE 102

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q29BX8 GA13095 "CDGSH iron-sulfur domain-containing protein 2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query:    53 NPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIR 112
             N  I KN A K+V   D  ++    AFCRCW+++++PYC+G H ++NK  GDNVGP++++
Sbjct:    72 NSSIRKNEA-KVVTMVDVEDIAGQAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPVVVK 130

Query:   113 R 113
             +
Sbjct:   131 K 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165336 NEET "NEET group protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
             +NP+I KN  DK+VD      L+ + T +CRCWRS  FP C+G H  +NK  GDNVGP+L
Sbjct:    46 INPEIRKNE-DKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLL 104

Query:   111 IRR 113
             +++
Sbjct:   105 LKK 107

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IPI

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB|Q9NZ45 CISD1 "CDGSH iron-sulfur domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct:    45 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 103

Query:   112 RRSK 115
             ++ +
Sbjct:   104 KKKE 107

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0043457 "regulation of cellular respiration" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:1261855 Cisd1 "CDGSH iron sulfur domain 1" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VN  I K++  K+V  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct:    45 VNLQIQKDNP-KVVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHIKHNEETGDNVGPLII 103

Query:   112 RRSK 115
             ++ +
Sbjct:   104 KKKE 107

GO:0005506 "iron ion binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043457 "regulation of cellular respiration" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

RGD|1309529 Cisd1 "CDGSH iron sulfur domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VN  I K++  K+V  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct:    45 VNLQIQKDNP-KVVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHIKHNEETGDNVGPLII 103

Query:   112 RRSK 115
             ++ +
Sbjct:   104 KKKE 107

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0043457 "regulation of cellular respiration" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|F1NG44 CISD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query:    52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
             VN  I K++  K+V  FD  +L D   +CRCWRS+ FP C+G H  +N   GDNVGP++I
Sbjct:    43 VNLHIQKDNP-KVVHAFDMEDLGDKAVYCRCWRSKKFPLCDGSHTQHNDETGDNVGPLII 101

Query:   112 RRSK 115
             +R +
Sbjct:   102 KRKE 105

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0043457 "regulation of cellular respiration" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
smart00704	38	smart00704, ZnF_CDGSH, CDGSH-type zinc finger	3e-05
pfam09360	34	pfam09360, zf-CDGSH, Iron-binding zinc finger CDGS	3e-04

>gnl|CDD|197836 smart00704, ZnF_CDGSH, CDGSH-type zinc finger

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 63 KIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFH 95
          K  D  +        A CRC RS++FPYC+G H
Sbjct: 1  KRPDEVEVEKRKK-YALCRCGRSKNFPYCDGSH 32

Function unknown. Length = 38

>gnl|CDD|220203 pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 78 AFCRCWRSRDFPYCNGFH 95
          A CRC RS++ P+C+G H
Sbjct: 16 ALCRCGRSKNQPFCDGSH 33

The CDGSH-type zinc finger domain binds iron rather than zinc as a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family. The domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, MitoNEET_N, pfam10660. The domain forms a uniquely folded homo-dimer and spans the outer mitochondrial membrane, orienting the iron-binding residues towards the cytoplasm. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG3461|consensus	132		99.82
COG3369	78	Zinc finger domain containing protein (CDGSH-type)	99.74
PF09360	38	zf-CDGSH: Iron-binding zinc finger CDGSH type; Int	99.64
smart00704	38	ZnF_CDGSH CDGSH-type zinc finger. Function unknown	99.53
KOG4605|consensus	129		99.01
KOG4605|consensus	129		97.96

>KOG3461|consensus

Probab=99.82  E-value=5.5e-21  Score=145.89  Aligned_cols=66  Identities=48%  Similarity=0.957  Sum_probs=62.5

Q ss_pred             ecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880          49 LVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK  115 (137)
Q Consensus        49 ~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~  115 (137)
                      .|.+|+.|+++ +.|+||.+++|++.++.++||||+|+++|||||||.+++.++|||++|+++++++
T Consensus        66 ~a~iN~hIqkd-~pKIVd~~d~eDl~~ka~yCrCWrs~kfP~CDGsh~KhNk~tgdNvgpliikk~~  131 (132)
T KOG3461|consen   66 KARINLHIQKD-NPKIVDAFDMEDLGDKAAYCRCWRSKKFPLCDGSHGKHNKETGDNVGPLIIKKKE  131 (132)
T ss_pred             CccccceeecC-CCceeEEEehhhhcccceEEEeeccCCcccccCcccccccccccccccceeeecc
Confidence            57889999999 8999999999999999999999999999999999999999999999999988765

>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]

Probab=99.74  E-value=1.5e-18  Score=122.89  Aligned_cols=56  Identities=25%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             cCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccC
Q psy4880          42 MAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL  102 (137)
Q Consensus        42 ~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~  102 (137)
                      +||||+|+|  .+.|..+..+......   +...+++|||||+|.|||||||||++++|+.
T Consensus         1 ~nGPy~v~~--~~riv~~~~gh~~~~~---~g~~~~~LCrCG~S~NKPfCDGtH~k~gf~g   56 (78)
T COG3369           1 KNGPYLVRG--RLRIVTHTAGHPEEVK---DGDEQAALCRCGHSENKPFCDGTHKKTGFDG   56 (78)
T ss_pred             CCCceeccc--eEEEeecCCCCcEEEe---ecceEEEEEeccCcCCCCccCCccccccccC
Confidence            599999999  5566666444322211   2246899999999999999999999999953

>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi

Probab=99.64  E-value=6e-17  Score=100.49  Aligned_cols=38  Identities=34%  Similarity=0.668  Sum_probs=25.5

Q ss_pred             ecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCc
Q psy4880          41 TMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHH   96 (137)
Q Consensus        41 ~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~   96 (137)
                      +.||||.|+|  +..                ..+.+++|||||+|+|+|||||||+
T Consensus         1 t~~~P~~v~g--~~~----------------~~~~~~~lC~Cg~S~~~PfCDGsH~   38 (38)
T PF09360_consen    1 TDNGPYKVEG--DTE----------------LEKGTYALCRCGKSKNKPFCDGSHK   38 (38)
T ss_dssp             -TTSSEEEEE--CGG----------------CSTSEEEE-SSS--TTTTB--SHHH
T ss_pred             CCCcCEEEEe--eEE----------------ecCCEEEEecCCCCCCCCccCCcCC
Confidence            4799999999  111                1136899999999999999999995

The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....

>smart00704 ZnF_CDGSH CDGSH-type zinc finger

Probab=99.53  E-value=8.7e-15  Score=91.07  Aligned_cols=27  Identities=48%  Similarity=1.073  Sum_probs=24.5

Q ss_pred             CCceEEEeecCCCCCcccCCCCccCcc
Q psy4880          74 TDFTAFCRCWRSRDFPYCNGFHHDYNK  100 (137)
Q Consensus        74 ~~~~alCrCg~S~~~PfCDGSH~~~~~  100 (137)
                      ...++||+||+|+|+|||||||+..++
T Consensus        11 ~~~~~lC~C~~S~~~PfCDGsH~~~~~   37 (38)
T smart00704       11 REKYALCRCGRSKNFPYCDGSHKKHNE   37 (38)
T ss_pred             CCEEEEeeCCCCCCCCccCCcccCcCc
Confidence            457999999999999999999998776

Function unknown.

>KOG4605|consensus

Probab=99.01  E-value=3.8e-10  Score=86.30  Aligned_cols=45  Identities=24%  Similarity=0.487  Sum_probs=38.3

Q ss_pred             CCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccccCCccc
Q psy4880          74 TDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTL  121 (137)
Q Consensus        74 ~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~~~P~~~  121 (137)
                      +.++.||-||+|+.+|||||||+..+   --++.|+.+.++++--+++
T Consensus        55 ~KtY~WCsCG~S~sQPfCDGsHk~~~---~tklrPvrFkvektg~~wl   99 (129)
T KOG4605|consen   55 GKTYRWCSCGRSKSQPFCDGSHKFQG---RTKLRPVRFKVEKTGMVWL   99 (129)
T ss_pred             CCEEEEEeccccCCCccccccccccc---cccccceEeEecccceEEe
Confidence            35899999999999999999998755   4469999999998766664

>KOG4605|consensus

Probab=97.96  E-value=5.5e-06  Score=63.65  Aligned_cols=27  Identities=30%  Similarity=0.740  Sum_probs=23.6

Q ss_pred             CCceEEEeecCCCCCcccCCCCccCcc
Q psy4880          74 TDFTAFCRCWRSRDFPYCNGFHHDYNK  100 (137)
Q Consensus        74 ~~~~alCrCg~S~~~PfCDGSH~~~~~  100 (137)
                      ...++||.|+++.+.|||||+|+....
T Consensus        94 tg~~wlCnCKqT~~rP~CDGtH~~~~~  120 (129)
T KOG4605|consen   94 TGMVWLCNCKQTQRRPYCDGTHRSERV  120 (129)
T ss_pred             cceEEeecccccCCCCccCCccccccc
Confidence            357999999999999999999986544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
3s2q_A	83	The Crystal Structure Of At5g51720 (At-Neet) Length		2e-12
2qd0_A	81	Crystal Structure Of Mitoneet Length = 81		4e-12
3ree_A	84	Crystal Structure Of Mitoneet Length = 84		4e-12
3ew0_A	80	The Novel 2fe-2s Outer Mitochondrial Protein Mitone		4e-12
2r13_A	79	Crystal Structure Of Human Mitoneet Reveals A Novel		5e-12
2qh7_A	76	Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochon		6e-12
4f28_A	76	The Crystal Structure Of A Human Mitoneet Mutant Wi		6e-12
4f2c_A	76	The Crystal Structure Of A Human Mitoneet Double Mu		2e-11
3s2r_A	83	Atchloroneet (H87c Mutant) Length = 83		3e-11
4f1e_A	76	The Crystal Structure Of A Human Mitoneet Mutant Wi		3e-11
4ezf_A	77	The Crystal Structure Of A Human Mitoneet Mutant Wi		4e-11
3lpq_A	79	Human Mitoneet With 2fe-2s Coordinating Ligand His		8e-11
3fnv_A	83	Crystal Structure Of Miner1: The Redox-Active 2fe-2		2e-10

>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet) Length = 83

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +NP+I KN  DK+VD      L+ + T +CRCWRS  FP C+G H  +NK  GDNVGP+L
Sbjct: 21  INPEIRKNE-DKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLL 79
Query: 111 IRRS 114
           +++ 
Sbjct: 80  LKKQ 83

>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet Length = 81

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 16  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 112 RRSK 115
           ++ +
Sbjct: 75  KKKE 78

>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet Length = 84

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 14  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
Query: 112 RRSK 115
           ++ +
Sbjct: 73  KKKE 76

>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet Displays Conformational Flexibility In Its N-Terminal Cytoplasmic Tethering Domain Length = 80

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 17  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 75
Query: 112 RRSK 115
           ++ +
Sbjct: 76  KKKE 79

>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe- 2s] Cluster Coordination Length = 79

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 16  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 112 RRSK 115
           ++ +
Sbjct: 75  KKKE 78

>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone Length = 76

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 13  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
           ++ +
Sbjct: 72  KKKE 75

>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met 62 Replaced By A Gly Length = 76

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 13  INLHIQKDNP-KIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
           ++ +
Sbjct: 72  KKKE 75

>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In Which Gly 66 Are Asp 67 Are Both Replaced With Ala Residues Length = 76

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L     +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 13  INLHIQKDNP-KIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
           ++ +
Sbjct: 72  KKKE 75

>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant) Length = 83

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +NP+I KN  DK+VD      L+ + T +CRCWRS  FP C+G    +NK  GDNVGP+L
Sbjct: 21  INPEIRKNE-DKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLL 79
Query: 111 IRRS 114
           +++ 
Sbjct: 80  LKKQ 83

>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp 67 Replaced By A Gly Length = 76

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L     +CRCWRS+ FP+C+G H  +N+  GDNVGP++I
Sbjct: 13  INLHIQKDNP-KIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
           ++ +
Sbjct: 72  KKKE 75

>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An Ala Inserted Between Asp 67 And Lys 68 Length = 77

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTA-FCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +N  I K++  KIV  FD  +L D  A +CRCWRS+ FP+C+G H  +N+  GDNVGP++
Sbjct: 13  INLHIQKDNP-KIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLI 71
Query: 111 IRRSK 115
           I++ +
Sbjct: 72  IKKKE 76

>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87 Replaced With Cys Length = 79

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
           +N  I K++  KIV  FD  +L D   +CRCWRS+ FP+C+G    +N+  GDNVGP++I
Sbjct: 17  INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPLII 75
Query: 112 RRSK 115
           ++ +
Sbjct: 76  KKKE 79

>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s Protein Causative In Wolfram Syndrome 2 Length = 83

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 52  VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
           +N  I K +  K+V+  +  +L+    A+CRCWRS+ FP C+G H+ +N+L GDNVGP++
Sbjct: 19  INLKIQKENP-KVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLI 77
Query: 111 IRRSKL 116
           +++ ++
Sbjct: 78  LKKKEV 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
3ew0_A	80	Mitoneet, CDGSH iron sulfur domain-containing prot	1e-20
3s2r_A	83	AT5G51720/MIO24_14; redox, Fe-S cluster, metal bin	2e-19
3fnv_A	83	CDGSH iron sulfur domain-containing protein 2; dia	3e-19

>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A Length = 80

 Score = 79.0 bits (194), Expect = 1e-20
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 51  HVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
            +N  I K    KIV  FD  +L D   +CRCWRS+ FP+C+G H  +N+  GDNVGP++
Sbjct: 16  MINLHIQK-DNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLI 74

Query: 111 IRRSK 115
           I++ +
Sbjct: 75  IKKKE 79

>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A Length = 83

 Score = 76.3 bits (187), Expect = 2e-19
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 51  HVNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPI 109
            +NP+I K + DK+VD      L+   T +CRCWRS  FP C+G    +NK  GDNVGP+
Sbjct: 20  GINPEIRK-NEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPL 78

Query: 110 LIRR 113
           L+++
Sbjct: 79  LLKK 82

>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens} Length = 83

 Score = 75.6 bits (185), Expect = 3e-19
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 51  HVNPDIHKNHADKIVDYFDKPNL-TDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPI 109
            +N  I K    K+V+  +  +L     A+CRCWRS+ FP C+G H+ +N+L GDNVGP+
Sbjct: 18  LINLKIQK-ENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPL 76

Query: 110 LIRRSKL 116
           ++++ ++
Sbjct: 77  ILKKKEV 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
4ezf_A	77	Mitoneet, CDGSH iron-sulfur domain-containing prot	99.83
3fnv_A	83	CDGSH iron sulfur domain-containing protein 2; dia	99.83
3s2r_A	83	AT5G51720/MIO24_14; redox, Fe-S cluster, metal bin	99.82
3tbm_A	69	Putative uncharacterized protein; iron-sulfur, CDG	99.81
3ew0_A	80	Mitoneet, CDGSH iron sulfur domain-containing prot	99.77
3tbo_A	60	Zinc finger, CDGSH-type domain protein; iron-sulfu	99.63
3tbn_A	87	Putative uncharacterized protein; CDGSH, iron-sulf	99.42
3tbn_A	87	Putative uncharacterized protein; CDGSH, iron-sulf	98.87

>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A

Probab=99.83  E-value=5.2e-22  Score=139.26  Aligned_cols=66  Identities=44%  Similarity=0.938  Sum_probs=61.8

Q ss_pred             ecCCCcccccCCCceeeeccCCCCCCC-ceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880          49 LVHVNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK  115 (137)
Q Consensus        49 ~G~V~l~I~~~~~gkvVd~~~~e~l~~-~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~  115 (137)
                      .+.||+.|+.+ +.++|+.+++|++++ +++|||||+|+++|||||||.+++.++|+|++|++++.++
T Consensus        10 ~~~vN~~i~kd-~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~   76 (77)
T 4ezf_A           10 KAMINLHIQKD-NPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE   76 (77)
T ss_dssp             TTCSCSSSCTT-SSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred             ccccccceecC-CCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence            57889999998 789999999999987 9999999999999999999999999999999999999854

>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}

Probab=99.83  E-value=6.9e-22  Score=140.28  Aligned_cols=66  Identities=39%  Similarity=0.864  Sum_probs=61.3

Q ss_pred             ecCCCcccccCCCceeeeccCCCCCC-CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880          49 LVHVNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK  115 (137)
Q Consensus        49 ~G~V~l~I~~~~~gkvVd~~~~e~l~-~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~  115 (137)
                      .+.||+.|+.+ +.++|+.++++++. ++++|||||+|+++|||||||++++.++|+|++|++++..+
T Consensus        16 ~~~vN~~I~k~-~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k~   82 (83)
T 3fnv_A           16 DSLINLKIQKE-NPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKKE   82 (83)
T ss_dssp             CCCSCSSSCTT-SSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECCC
T ss_pred             ccccCcceecC-CCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEecc
Confidence            47789999998 78999999999998 89999999999999999999999999999999999998743

>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A

Probab=99.82  E-value=6.3e-22  Score=140.38  Aligned_cols=63  Identities=48%  Similarity=0.951  Sum_probs=59.0

Q ss_pred             cCCCcccccCCCceeeeccCCCCCC-CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEc
Q psy4880          50 VHVNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR  113 (137)
Q Consensus        50 G~V~l~I~~~~~gkvVd~~~~e~l~-~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~  113 (137)
                      +.||+.|+++ +.|+||.++++++. ++++|||||+|+++|||||||.+++.++|+|++|++++.
T Consensus        19 ~~vN~~I~K~-~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk   82 (83)
T 3s2r_A           19 GGINPEIRKN-EDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKK   82 (83)
T ss_dssp             -CCCSSTTTT-SSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEEC
T ss_pred             CccCchhhcC-CCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEec
Confidence            6889999999 89999999999998 699999999999999999999999999999999999875

>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}

Probab=99.81  E-value=7.2e-21  Score=130.94  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             CCeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccC
Q psy4880          36 PPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL  102 (137)
Q Consensus        36 ~~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~  102 (137)
                      ..|++++||||+|+|+  ++|... +|+.+.     ..+..++|||||+|+|+|||||||+..+|..
T Consensus         8 ~~I~v~~nGPl~V~G~--v~i~~~-dG~~~~-----~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~~   66 (69)
T 3tbm_A            8 VVITARNNGPYHIKGS--FRIVTQ-GGRELP-----VEQGQAWLCRCGHSLNKPFCDGSHKRVEFDS   66 (69)
T ss_dssp             CEEEECTTSCEEEESS--CEEEES-SCCEEC-----CBTTEEEECCSSCCSSTTBCCSHHHHTTCCC
T ss_pred             eEEEEeCCCCEEEECC--CeEECC-CCCEEe-----eCCCEEEEeeCCCCCCCCccCCCcCCCCccc
Confidence            3579999999999994  566655 344331     1246899999999999999999999999964

>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A

Probab=99.77  E-value=4.7e-20  Score=130.13  Aligned_cols=63  Identities=37%  Similarity=0.862  Sum_probs=53.5

Q ss_pred             CCeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880          36 PPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK  115 (137)
Q Consensus        36 ~~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~  115 (137)
                      ..+.|.+|||++|+. ++                .+++...++|||||+|+|+|||||||+++++++|+|++|++++.++
T Consensus        17 vni~I~k~gP~~V~~-~~----------------led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~   79 (80)
T 3ew0_A           17 INLHIQKDNPKIVHA-FD----------------MEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE   79 (80)
T ss_dssp             SCSSSCTTSSSEEEE-EC----------------GGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC
T ss_pred             cCeEEeCCCCEEEEe-ec----------------cccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEecc
Confidence            566889999999994 22                2233468999999999999999999999999999999999999864

>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}

Probab=99.63  E-value=6.9e-17  Score=108.74  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=37.2

Q ss_pred             CeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCC
Q psy4880          37 PFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLG  103 (137)
Q Consensus        37 ~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g  103 (137)
                      .+++.+||||.|+-                  +    ...++|||||+|+|+|||||||+..+|...
T Consensus         4 ~I~v~~ngP~~v~~------------------e----~~~~~lC~CG~S~n~PFCDGSHk~~~f~~~   48 (60)
T 3tbo_A            4 EIRAIENGPYEVKI------------------G----GRAIYLCRCGHSGSKPHCDGTHAKVGFKAP   48 (60)
T ss_dssp             EEEECTTSCEEEEC-------------------------CEEECCSSCCTTTTBCCSHHHHHTCCCC
T ss_pred             EEEEeCCCCEEEEE------------------C----CcEEEEEECCCCCCCCccCCcCCCCccccC
Confidence            47899999999982                  1    135699999999999999999999988654

>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}

Probab=99.42  E-value=8.3e-14  Score=99.59  Aligned_cols=39  Identities=26%  Similarity=0.589  Sum_probs=32.5

Q ss_pred             CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccccCCc
Q psy4880          75 DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPF  119 (137)
Q Consensus        75 ~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~~~P~  119 (137)
                      ..++||+||+|+|+|||||||+..+      +.|+.++.+++..+
T Consensus        28 ~~~~~C~CG~S~~~PfCDGSH~~~~------f~P~~f~~e~~~~~   66 (87)
T 3tbn_A           28 KTYHWCACGRSKAQPFCDGSHKGTG------LAPVAYTPDKAGTA   66 (87)
T ss_dssp             CCEEECSSSCCSSTTBCCSTTTTTT------CCCEEECCSSCEEE
T ss_pred             CEEEEeeCCCCCCCCCcCCccccCC------ccceEEEECCCcEE
Confidence            4789999999999999999998743      67888888775444

>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}

Probab=98.87  E-value=5.4e-10  Score=79.85  Aligned_cols=25  Identities=32%  Similarity=0.732  Sum_probs=22.5

Q ss_pred             CCceEEEeecCCCCCcccCCCCccC
Q psy4880          74 TDFTAFCRCWRSRDFPYCNGFHHDY   98 (137)
Q Consensus        74 ~~~~alCrCg~S~~~PfCDGSH~~~   98 (137)
                      .+.++||+|++|+|.|||||||+++
T Consensus        63 ~~~~~lC~CK~T~n~PfCDGsH~~L   87 (87)
T 3tbn_A           63 AGTAYFCGCKASKAPPLCDGTHKTL   87 (87)
T ss_dssp             CEEEEECSSSCCSSTTBCCSGGGTC
T ss_pred             CcEEEEecCCCCCCCCccCCcCCcC
Confidence            4679999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00